BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045164
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/302 (36%), Positives = 173/302 (57%), Gaps = 10/302 (3%)
Query: 31 LQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGGI 90
L F++Y ++CP+AE I+++ V K A +R FHDC V+ CDAS+LL +
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 91 VSEQASERSFGMR--NFRYVDTIKEALEEEC-PVTVSCADIVALSAREGIVMLGGPRIEM 147
EQ + + +R F+ V+ I++ LE EC VSC+DI+AL+AR+ +V+ GGP +
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 148 KTGRRDSKESYFTEVDKL--IPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCV 205
GRRDS+ S+ + D L +P + ++ ++L+ G+D V + G H++G HC
Sbjct: 129 PLGRRDSR-SFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 206 NLVHRLYPTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQ 265
+ RL+P DP+++P + LKR CP D + VL R TP + DN YY +L+N+
Sbjct: 188 SFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVR----TPNVFDNKYYIDLVNR 243
Query: 266 KGLLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEIRKDCRY 325
+GL + DQ L ++ T P VE+ A F +QF ++G + + T DQGE+R++C
Sbjct: 244 EGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSV 303
Query: 326 AN 327
N
Sbjct: 304 RN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 154/298 (51%), Gaps = 6/298 (2%)
Query: 31 LQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGGI 90
L N+YA CP A IK V + K S +R FHDC V+ CDAS+LL
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 91 VSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKT 149
E+ A + +R F +DTIK +E CP VSCADI+A++AR+ +V LGG +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 150 GRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVH 209
GRRDS + + + +P +LS ++SAF + G + V L GAH++G+ C
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 210 RLYPTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLL 269
R+Y + +++P Y + L+ CP+ D + D TP DN YY NL N+KGLL
Sbjct: 182 RIYN--ESNIDPTYAKSLQANCPSVGGDTNLSPF---DVTTPNKFDNAYYINLRNKKGLL 236
Query: 270 IVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEIRKDCRYAN 327
DQQL + T V + + F+ F A+ + +PLT G+IR +CR N
Sbjct: 237 HSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 152/306 (49%), Gaps = 11/306 (3%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y+ +CP A I++ + S +R FHDC V CDAS+LL G
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
I SE+ A R F VD IK ALE CP VSC+D++AL++ + + GGP +
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLV 208
GRRDS + + IP+ +SLS + F + G++ VAL GAH+ GR C
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 209 HRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLL 263
+RL+ DP+LN L++ CP + A D TP DNNY+ NL
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCP---QNGSASTITNLDLSTPDAFDNNYFANLQ 238
Query: 264 NQKGLLIVDQQLAS--DPRTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEIRK 321
+ GLL DQ+L S T V A++ F Q F++++ + +PLT GEIR
Sbjct: 239 SNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 322 DCRYAN 327
DC+ N
Sbjct: 299 DCKKVN 304
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 162/311 (52%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C ++
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP N + A++ D TP I DN YY NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 299 RLNCRVVNSNS 309
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 158/311 (50%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G HS G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 237
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 298 RLNCRVVNSNS 308
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 161/311 (51%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP N + A++ D TP I DN YY NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 299 RLNCRVVNSNS 309
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 161/311 (51%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP N + A++ D TP I DN YY NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDF--DLRTPTIFDNKYYVNL 238
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 299 RLNCRVVNSNS 309
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 161/311 (51%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP N + A++ D TP I DN YY NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDM--DLRTPTIFDNKYYVNL 238
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 299 RLNCRVVNSNS 309
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 158/311 (50%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 237
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 298 RLNCRVVNSNS 308
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 158/311 (50%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 237
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 298 RLNCRVVNSNS 308
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 157/310 (50%), Gaps = 13/310 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 238
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RKDCRYANSN 329
R +CR NSN
Sbjct: 299 RLNCRVVNSN 308
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 156/309 (50%), Gaps = 13/309 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 237
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RKDCRYANS 328
R +CR NS
Sbjct: 298 RLNCRVVNS 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 156/309 (50%), Gaps = 13/309 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R FHDC V CDAS+LL
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 237
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RKDCRYANS 328
R +CR NS
Sbjct: 298 RLNCRVVNS 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 157/311 (50%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S +R F DC V CDAS+LL
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 238
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 299 RLNCRVVNSNS 309
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 153/305 (50%), Gaps = 11/305 (3%)
Query: 31 LQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGGI 90
L +YA +CP A +++ V + S +R FHDC V CDAS+LL +G I
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 91 VSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKT 149
+SE+ A + R F VD IK ALE CP VSC D++AL+++ + + GGP +
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 150 GRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVH 209
GRRD+ + + IP+ LS + S F + G++ VAL GAH+ GR C +
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 210 RLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN 264
RL+ DP+LN L+ CP + D TP DNNY+ NL +
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNL---DLSTPDAFDNNYFTNLQS 240
Query: 265 QKGLLIVDQQLASDPRTA--PFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEIRKD 322
GLL DQ+L S +A V A++ F Q F++++ + +PLT GEIR D
Sbjct: 241 NNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLD 300
Query: 323 CRYAN 327
C+ N
Sbjct: 301 CKKTN 305
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 156/311 (50%), Gaps = 13/311 (4%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y SCP +I++ ++N A S + F DC V CDAS+LL
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 90 IVSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
+E+ A + R F +D +K A+E CP TVSCAD++ ++A++ + + GGP +
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEG-TVALLGAHSVGRVHCVNL 207
GRRDS +++ + +P +L + +F++ G++ VAL G H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 208 VHRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+ RLY DP+LN Y + L+ CP V + D TP I DN YY NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDF---DLRTPTIFDNKYYVNL 237
Query: 263 LNQKGLLIVDQQLASDPR---TAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEI 319
QKGL+ DQ+L S P T P V A F F A+ + PLT QG+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 320 RKDCRYANSNT 330
R +CR NSN+
Sbjct: 298 RLNCRVVNSNS 308
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 158/304 (51%), Gaps = 7/304 (2%)
Query: 31 LQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGGI 90
LQ +Y SCP AE +++Q V + + A +R FHDC V+ CDAS+LL
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 91 VSEQ-ASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKT 149
+E+ A + +R F + K A+E CP TVSCADI+A +AR+ + G ++ +
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 150 GRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVH 209
GRRD S +E + IP+ + + ++++F + + + V L GAHS+G HC + +
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 210 RLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN 264
RLY +DP+L+P Y L+ CP N + D TP ++DN YY +
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPA-NSTRFTPITVSLDIITPSVLDNMYYTGVQL 240
Query: 265 QKGLLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEIRKDCR 324
GLL DQ L ++ + V+ A + + +F++A+ + + LT QGEIR +C
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 325 YANS 328
NS
Sbjct: 301 VVNS 304
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 151/309 (48%), Gaps = 21/309 (6%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL + YA+SCP I+++QV A S +R FHDC V CDASLLL A
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGAD- 59
Query: 90 IVSEQASERSF-GMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
SE+ + + R F +DTIK A+E CP VSCADI+ L+AR+ +V+ GGP +
Sbjct: 60 --SEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLV 208
GR+D + + L P+ + L +++ F + +++ VAL GAH+ G+ C
Sbjct: 118 LGRKDGLVANQNSANNL-PSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFS 176
Query: 209 HRLYPTV-----DPSLNPEYGEYLKRRCPT-PNPDPKAVLYARNDPETPMIIDNNYYKNL 262
+RL+ D +L L+ CP N + A L D T DNNY+KNL
Sbjct: 177 NRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPL----DRSTTDTFDNNYFKNL 232
Query: 263 LNQKGLLIVDQQLASDP----RTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGE 318
L KGLL DQ L S T VE + F + F+ A ++ N GE
Sbjct: 233 LEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCA--MIRMGNISNGASGE 290
Query: 319 IRKDCRYAN 327
+R +CR N
Sbjct: 291 VRTNCRVIN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 150/306 (49%), Gaps = 11/306 (3%)
Query: 30 QLQFNYYAESCPKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGG 89
QL +Y E+CP I+ + + S +R FHDC V+ CD S+LL
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 90 IVSEQASERSF-GMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK 148
I SEQ + + +R V+ IK A+E CP TVSCADI+A++A V+ GGP +
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLV 208
GRRDS + T ++ +P +L+ + ++F G++ V L G H+ GR C +
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180
Query: 209 HRLY-----PTVDPSLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLL 263
+RLY DP+LN Y E L+ RCP + D TP DN YY NLL
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQ---NATGDNLTNLDLSTPDQFDNRYYSNLL 237
Query: 264 NQKGLLIVDQQLASDP--RTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTEDQGEIRK 321
GLL DQ+L S P T P V +++ F F ++ + LT D+GEIR
Sbjct: 238 QLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRL 297
Query: 322 DCRYAN 327
C + N
Sbjct: 298 QCNFVN 303
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + T +P+
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANPN- 196
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ DN++Y NLLN+
Sbjct: 197 ---------------------------------VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + DN++Y NLLN+
Sbjct: 188 -------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + DN++Y NLLN+
Sbjct: 188 -------------------EGPWDATNN-----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 81 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 136
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 172
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 173 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 93 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 148
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 184
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 185 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 81 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 136
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 172
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 173 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 93 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 148
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 184
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 185 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 81 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 136
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 172
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 173 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 81 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 136
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 137 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 172
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 173 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 222
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 223 YAADEDAFFADYAEAHQKLSE 243
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+++ P +S AD+ L+A I +GGP I GR D+K+ D +P+ + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 173 LSTVLSAFQSTGIDVEGTVALLGAHSVGRVHC-VNLVHRLYPTVDPSLNPEYGEYLKRRC 231
S V F+ G + + TVAL+GAH+ G H + H + + + L
Sbjct: 136 QSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQLLDED 195
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASDPRTAPFVEKMAAD 291
NP E ++D K + +L D L DP +VE A D
Sbjct: 196 WVLNP----------KVEQMQLMDRATTKLM-----MLPSDVCLLLDPSYRKYVELYAKD 240
Query: 292 NGYFHQQFSRAVGLLSE 308
N F++ F+ A L+E
Sbjct: 241 NDRFNKDFANAFKKLTE 257
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 93 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 148
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 184
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 185 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 93 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 148
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 184
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 185 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 93 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 148
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 184
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 185 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+++ P +S AD+ L+A I +GGP I GR D+K+ D +P+ + +
Sbjct: 77 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 135
Query: 173 LSTVLSAFQSTGIDVEGTVALLGAHSVGRVHC-VNLVHRLYPTVDPSLNPEYGEYLKRRC 231
S V F+ G + + TVAL+GAH+ G H + H + + + L
Sbjct: 136 QSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDED 195
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASDPRTAPFVEKMAAD 291
NP E ++D K + +L D L DP +VE A D
Sbjct: 196 WVLNP----------KVEQMQLMDRATTKLM-----MLPSDVCLLLDPSYRKYVELYAKD 240
Query: 292 NGYFHQQFSRAVGLLSE 308
N F++ F+ A L+E
Sbjct: 241 NDRFNKDFANAFKKLTE 257
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+++ P +S AD+ L+A I +GGP I GR D+K+ D +P+ + +
Sbjct: 76 ETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKT 134
Query: 173 LSTVLSAFQSTGIDVEGTVALLGAHSVGRVHC-VNLVHRLYPTVDPSLNPEYGEYLKRRC 231
S V F+ G + + TVAL+GAH+ G H + H + + + L
Sbjct: 135 QSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDED 194
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASDPRTAPFVEKMAAD 291
NP E ++D K + +L D L DP +VE A D
Sbjct: 195 WVLNP----------KVEQMQLMDRATTKLM-----MLPSDVCLLLDPSYRKYVELYAKD 239
Query: 292 NGYFHQQFSRAVGLLSE 308
N F++ F+ A L+E
Sbjct: 240 NDRFNKDFANAFKKLTE 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 93 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 148
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KERS 184
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 185 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + DN++Y NLLN+
Sbjct: 188 -------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+++ V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N YY NLLN+
Sbjct: 185 -------------------EGPWGAANN-----VFTNEYYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + DN++Y NLLN+
Sbjct: 188 -------------------EGPWTANNN-----VFDNSFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E ++E+ P+ VS AD L+ + + GGP + GR D E + +P+
Sbjct: 81 EPIKEQFPI-VSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEP---PPEGRLPDATKG 136
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K R
Sbjct: 137 SDHLRDVFGKAMGLSDQDIVALSGGHTIGAAH------------------------KERS 172
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL + GLL + D+ L +D P VEK
Sbjct: 173 GFEGP------WTSN----PLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEK 222
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 223 YAADEDVFFADYAEAHLKLSE 243
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 82 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 135
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + +
Sbjct: 136 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT 195
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASDP 279
N Y L N D K +ND + Y +L D L DP
Sbjct: 196 NEFYLNLL-------NEDWKL---EKNDANNEQWDSKSGYM-------MLPTDYSLIQDP 238
Query: 280 RTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+ V++ A D F + FS+A L EN
Sbjct: 239 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 268
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 83/201 (41%), Gaps = 43/201 (21%)
Query: 113 EALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDS 172
E L+ E P+ +S AD L+ + + GGP + GR D E + +P+
Sbjct: 93 EPLKAEFPI-LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEP---PPEGRLPDATKG 148
Query: 173 LSTVLSAF-QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRC 231
+ F ++ G+ + VAL G H++G H K
Sbjct: 149 SDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH------------------------KEAS 184
Query: 232 PTPNPDPKAVLYARNDPETPMIIDNNYYKNLLN--QKGLLIV--DQQLASDPRTAPFVEK 287
P + N P+I DN+Y+ LL+ ++GLL + D+ L SDP P V+K
Sbjct: 185 GFEGP------WTSN----PLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK 234
Query: 288 MAADNGYFHQQFSRAVGLLSE 308
AAD F ++ A LSE
Sbjct: 235 YAADEDAFFADYAEAHQKLSE 255
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT 194
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASDP 279
N Y L N D K +ND + Y +L D L DP
Sbjct: 195 NEFYLNLL-------NEDWKL---EKNDANNEQWDSKSGYM-------MLPTDYSLIQDP 237
Query: 280 RTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+ V++ A D F + FS+A L EN
Sbjct: 238 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 267
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPFGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 87 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 140
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + +
Sbjct: 141 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFT 200
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASDP 279
N Y L N D K +ND + Y +L D L DP
Sbjct: 201 NEFYLNLL-------NEDWKL---EKNDANNEQWDSKSGYM-------MLPTDYSLIQDP 243
Query: 280 RTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+ V++ A D F + FS+A L EN
Sbjct: 244 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 273
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 190
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P+ A N + N +Y NLLN+
Sbjct: 191 -----------------GPQGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 190
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
G + C A N + N +Y NLLN+
Sbjct: 191 ----GPW---GC------------ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 87 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 140
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 141 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 190
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 191 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 227 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 83 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 136
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 137 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 186
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 187 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 222
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 223 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 271
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 77 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 130
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H
Sbjct: 131 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 175
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+R P A N+ + N +Y NLLN+
Sbjct: 176 ---------KRSGYEGP-----FGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 216
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 217 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 265
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNENWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 83 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 136
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H
Sbjct: 137 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 181
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+R P A N+ + N +Y NLLN+
Sbjct: 182 ---------KRSGYEGP-----FGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 222
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 223 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKLLEN 271
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 185 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H
Sbjct: 140 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+R P A N+ + N +Y NLLN+
Sbjct: 185 ---------KRSGYEGP-----WGAANN-----VFTNEFYLNLLNENWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H
Sbjct: 135 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 179
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+R P A N+ + N +Y NLLN+
Sbjct: 180 ---------KRSGYEGP-----WGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 24/211 (11%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHR-LYPTVDPS 218
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + + +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNC 197
Query: 219 LNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASD 278
E+ YL N D K +ND + Y +L D L D
Sbjct: 198 FTNEF--YLNLL----NEDWKL---EKNDANNEQWDSKSGYM-------MLPTDYSLIQD 241
Query: 279 PRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
P+ V++ A D F + FS+A L EN
Sbjct: 242 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+R P A N+ + N +Y NLLN+
Sbjct: 183 ---------KRSGYEGP-----WGAANN-----VFTNEFYLNLLNENWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H
Sbjct: 140 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+R P A N+ + N +Y NLLN+
Sbjct: 185 ---------KRSGYEGP-----WGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P A N + N +Y NLLN+
Sbjct: 189 -----------------GPGGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 190
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P A N + N +Y NLLN+
Sbjct: 191 -----------------GPGGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN----------SGY 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
YG A N+ + N +Y NLLN+
Sbjct: 185 EGPYG-------------------AANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P+ A N + N +Y NLLN+
Sbjct: 186 -----------------GPQGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 26/212 (12%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHR--LYPTVDP 217
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV 194
Query: 218 SLNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLAS 277
N +Y L N D K +ND + Y +L D L
Sbjct: 195 FTNEKYLNLL-------NEDWKL---EKNDANNEQWDSKSGYM-------MLPTDYSLIQ 237
Query: 278 DPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
DP+ V++ A D F + FS+A L EN
Sbjct: 238 DPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 187
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 188 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 24/211 (11%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHR-LYPTVDPS 218
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + + +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV 194
Query: 219 LNPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASD 278
E+ YL N D K +ND + Y + L D L D
Sbjct: 195 FTNEF--YLNLL----NEDWKL---EKNDANNEQWDSKSGYMH-------LPTDYSLIQD 238
Query: 279 PRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
P+ V++ A D F + FS+A L EN
Sbjct: 239 PKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL GAH++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHLKNSGY---------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 185 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 87 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 140
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 141 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 190
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 191 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L + L DP+ V++ A D F + FS+A L EN
Sbjct: 227 DSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 185 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 185 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 86 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 139
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 140 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 189
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 190 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 225
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L + L DP+ V++ A D F + FS+A L EN
Sbjct: 226 DSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 274
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 22/210 (10%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N + ++
Sbjct: 138 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNV 197
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKGLLIVDQQLASDP 279
G YL N D K +ND + Y +L D L DP
Sbjct: 198 FTNEG-YLNLL----NEDWKL---EKNDANNEQWDSKSGYM-------MLPTDYSLIQDP 242
Query: 280 RTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+ V++ A D F + FS+A L EN
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P A N + N +Y NLLN+
Sbjct: 189 -----------------GPGGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 224 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 272
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 82 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 135
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 136 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 186
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P A N + N +Y NLLN+
Sbjct: 187 -----------------GPGGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 270
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 185
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P A N + N +Y NLLN+
Sbjct: 186 -----------------GPGGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L E+
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLED 269
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 138 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYE--------- 188
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
P A N + N +Y NLLN+
Sbjct: 189 -----------------GPGGA--ANN------VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L + L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 84 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 137
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H
Sbjct: 138 TPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------------- 182
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+R P A N+ + N +Y NLLN+
Sbjct: 183 ---------KRSGYEGP-----WGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 223
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L L DP+ V++ A D F + FS+A L EN
Sbjct: 224 DSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 272
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELKNSGY---------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 185 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 87 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 140
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GAH++G+ H N +
Sbjct: 141 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGY---------- 190
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 191 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 226
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L L DP+ V++ A D F + FS+A L EN
Sbjct: 227 DSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 275
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 41 PKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGGIVSEQASERSF 100
P A+D+ Q+ I N+ G A +R FHD I S KAGG
Sbjct: 19 PLAQDL--QETI-FQNECGQDAHEVIRLTFHDAIAISRSQG---PKAGGGADGSMLLFPT 72
Query: 101 GMRNFRYVDTIKEALEEECPV-----TVSCADIVALSAREGIVML----GGPRIEMKTGR 151
NF + I +++ P T+S AD+V + G V L G PR+E GR
Sbjct: 73 VEPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFA---GAVALSNCPGAPRLEFLAGR 129
Query: 152 RDSKESYFTEVDKLIPNHNDSLSTVLSAFQ-STGIDVEGTVALLGAHSVGRVHCVN 206
+ VD LIP DS++ +L F+ + G V+LL +HSV R + V+
Sbjct: 130 PNKT---IAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVD 182
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 82 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 135
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GA ++G+ H N +
Sbjct: 136 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGY---------- 185
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 186 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 82 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 135
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GA ++G+ H N +
Sbjct: 136 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGY---------- 185
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 186 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 221
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 222 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 270
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 60/229 (26%)
Query: 101 GMRN-FRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYF 159
G++N F+++ E + +E P +S D+ +L + + GP+I + GR D+ E
Sbjct: 81 GLQNGFKFL----EPIHKEFPW-ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDT- 134
Query: 160 TEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSL 219
T + +P+ + V + FQ ++ VAL+GA ++G+ H N +
Sbjct: 135 TPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSGY---------- 184
Query: 220 NPEYGEYLKRRCPTPNPDPKAVLYARNDPETPMIIDNNYYKNLLNQKG------------ 267
+ A N+ + N +Y NLLN+
Sbjct: 185 -------------------EGPWGAANN-----VFTNEFYLNLLNEDWKLEKNDANNEQW 220
Query: 268 -------LLIVDQQLASDPRTAPFVEKMAADNGYFHQQFSRAVGLLSEN 309
+L D L DP+ V++ A D F + FS+A L EN
Sbjct: 221 DSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLEN 269
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 42/200 (21%)
Query: 123 VSCADIVALSAREGIVMLGGPRIEMKTGRRDSKESYFTEVDKLIPNHN--DSLSTVLSAF 180
V+ AD+ L++ I GGP+I MK GR D E + +P+ + F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 181 QSTGIDVEGTVALLGAHSVGRVHCVNLVHRLYPTVDPSLNPEYGEYLKRRCPTPNPDPKA 240
G++ + VAL GAH++GR P+ + K P+ K
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSR-----------------PDRSGWGK-------PETK- 181
Query: 241 VLYARNDPETP---------MIIDNNYYKNLLNQKG----LLIVDQQLASDPRTAPFVEK 287
Y ++ P P + DN+Y+K++ ++ +L D L DP + EK
Sbjct: 182 --YTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEK 239
Query: 288 MAADNGYFHQQFSRAVGLLS 307
AAD F + ++ A LS
Sbjct: 240 YAADPEAFFKDYAEAHAKLS 259
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 41 PKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGGIVSEQASERSF 100
P A+D+ Q+ I N+ G A +R FHD I S KAGG
Sbjct: 19 PLAQDL--QETI-FQNECGEDAHEVIRLTFHDAIAISRSQG---PKAGGGADGSMLLFPT 72
Query: 101 GMRNFRYVDTIKEALEEECPV-----TVSCADIVALSAREGIVML----GGPRIEMKTGR 151
NF + I +++ P T+S AD+V + G V L G PR+E GR
Sbjct: 73 VEPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFA---GAVALSNCPGAPRLEFLAGR 129
Query: 152 RDSKESYFTEVDKLIPNHNDSLSTVLSAFQ-STGIDVEGTVALLGAHSVGRVHCVN 206
+ VD LIP DS++ +L F+ + G V+LL +HSV R + V+
Sbjct: 130 PNKT---IAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVD 182
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 41 PKAEDIIKQQVINLYNKHGNTAVSWVRNLFHDCIVKSCDASLLLKKAGGIVSEQASERSF 100
P A+D+ Q+ I N+ G A +R FHD I S KAGG
Sbjct: 19 PLAQDL--QETI-FQNECGEDAHEVIRLTFHDAIAISRSQG---PKAGGGADGSMLLFPT 72
Query: 101 GMRNFRYVDTIKEALEEECPV-----TVSCADIVALSAREGIVML----GGPRIEMKTGR 151
NF + I +++ P T+S AD+V + G V L G PR+E GR
Sbjct: 73 VEPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFA---GAVALSNCPGAPRLEFLAGR 129
Query: 152 RDSKESYFTEVDKLIPNHNDSLSTVLSAFQ-STGIDVEGTVALLGAHSVGRVHCVN 206
+ VD LIP DS++ +L F+ + G V+LL +HSV R V+
Sbjct: 130 PNKT---IAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVD 182
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 123 VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQ 181
VS D++ +A G+ G PR+E TGR +S + LIP ++++ +L F
Sbjct: 111 VSFGDLIQFAAAVGMSNCPGSPRLEFLTGRSNSSQ---PSPPSLIPGPGNTVTAILDRFG 167
Query: 182 STGIDVEGTVALLGAHSVGRVHCVN 206
G + V LL AHS+ +N
Sbjct: 168 DAGFSPDEVVDLLAAHSLASQEGLN 192
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 123 VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQ 181
VS D V + G GGPR++ GR + + D L+P+ DS +L+
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNISQP---SPDGLVPDPTDSADKILARMA 160
Query: 182 STGIDVEGTVALLGAHSV 199
G V LL +HS+
Sbjct: 161 DIGFSPTEVVHLLASHSI 178
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPQDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V+LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIAAADKVD 178
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADGVD 178
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADGVD 178
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPGPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEGFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAADKVD 178
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVWLLASHSIAAAAKVD 178
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 104 NFRYVDTIKEALEEECPVT----VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESY 158
NF I E + + P +S D + + G+ GG RI GR D+ +
Sbjct: 74 NFPANAGIDEIVSAQKPFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAA- 132
Query: 159 FTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVN 206
D L+P DS+ ++L+ G V LL +HS+ V+
Sbjct: 133 --SPDHLVPEPFDSVDSILARMGDAGFSPVEVVYLLASHSIAAADKVD 178
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 123 VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQ 181
VS D++ + G+ G PR+E TGR +S + LIP ++++ +L
Sbjct: 112 VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQ---PSPPSLIPGPGNTVTAILDRMG 168
Query: 182 STGIDVEGTVALLGAHSVGRVHCVN 206
G + V LL AHS+ +N
Sbjct: 169 DAGFSPDEVVDLLAAHSLASQEGLN 193
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 123 VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQ 181
VS D++ + G+ G PR+E TGR +S + LIP ++++ +L
Sbjct: 111 VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPS---PPSLIPGPGNTVTAILDRMG 167
Query: 182 STGIDVEGTVALLGAHSVGRVHCVN 206
G + V LL AHS+ +N
Sbjct: 168 DAGFSPDEVVDLLAAHSLASQEGLN 192
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 123 VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLS-AF 180
V+ D +A + G+ G P+++ GR ++ ++ D L+P ++ VL+
Sbjct: 104 VTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEATQA---APDGLVPEPFHTIDQVLARML 160
Query: 181 QSTGIDVEGTVALLGAHSVGRVHCVN 206
+ G D TV LL AHS+ + V+
Sbjct: 161 DAGGFDEIETVXLLSAHSIAAANDVD 186
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 123 VSCADIVALSAREGIV-MLGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQ 181
VS D++ + G+ G PR+E TGR S + LIP ++++ +L
Sbjct: 111 VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSSSSQ---PSPPSLIPGPGNTVTAILDRMG 167
Query: 182 STGIDVEGTVALLGAHSVGRVHCVN 206
G + V LL AHS+ +N
Sbjct: 168 DAGFSPDEVVDLLAAHSLASQEGLN 192
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 280 RTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTE--DQGEIRKDCRYANSNTNN 332
R +EK+A D+ +Q F + GL+ + P + +Q I K R+A+++T++
Sbjct: 127 RVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDS 181
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 280 RTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTE--DQGEIRKDCRYANSNTNN 332
R +EK+A D+ +Q F + GL+ + P + +Q I K R+A+++T++
Sbjct: 355 RVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDS 409
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 280 RTAPFVEKMAADNGYFHQQFSRAVGLLSENNPLTE--DQGEIRKDCRYANSNTNN 332
R +EK+A D+ +Q F + GL+ + P + +Q I K R+A+++T++
Sbjct: 355 RVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDS 409
>pdb|1H3J|A Chain A, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
pdb|1H3J|B Chain B, Structure Of Recombinant Coprinus Cinereus Peroxidase
Determined To 2.0 A
Length = 342
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 123 VSCADIVALSAREGIVML-GGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQ 181
VS D++ + G+ G PR+E TGR +S + LIP ++++ +L
Sbjct: 110 VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQ---PSPPSLIPGPGNTVTAILDRMG 166
Query: 182 STGIDVEGTVALLGAHSVGRVHCVN 206
G + V LL A S+ +N
Sbjct: 167 DAGFSPDEVVDLLAAXSLASQEGLN 191
>pdb|2R50|A Chain A, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
pdb|2R50|B Chain B, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
pdb|2R50|C Chain C, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
pdb|2R50|D Chain D, The Crystal Structure Of Nonsymbiotic Corn Hemoglobin 1
Length = 165
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 14/57 (24%)
Query: 73 CIVKSCDASLLLKKAGGIVSEQASERSFGMRNFRY--------------VDTIKEAL 115
V +C+A+ L+KAG + + + + G + RY ++TIKEAL
Sbjct: 77 VFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEAL 133
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 140 LGGPRIEMKTGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSV 199
+G IE+K GR D +D + +ND+ + +L + I+ TVA +G
Sbjct: 328 VGAQPIEIKQGRID--------IDHVSFQYNDNEAPILKDI-NLSIEKGETVAFVGMSGG 378
Query: 200 GRVHCVNLVHRLY 212
G+ +NL+ R Y
Sbjct: 379 GKSTLINLIPRFY 391
>pdb|3ASM|A Chain A, Crystal Structure Of Q54a Mutant Protein Of Bst-Rnase Hiii
Length = 310
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 58/264 (21%)
Query: 94 QASERSFGMRNFRYVDTIKEALEEECPVTVSCADIVALSAREGIVMLGGPRIEMK----- 148
QA ++ Y + + L V D+V + R G V+ G E +
Sbjct: 7 QADQQLLDALRAHYEGALSDRLPAGALFAVKRPDVVITAYRSGKVLFAGKAAEQEAAKWI 66
Query: 149 TGRRDSKESYFTEVDKLIPNHNDSLSTVLSAFQSTGIDVEGTVALLGAHSVGRVHCVNL- 207
+G S E+ + L + SLS + S TG D G + + A+ V R H +
Sbjct: 67 SGASASNETADHQPSALAAHQLGSLSAIGSDEVGTG-DYFGPIVVAAAY-VDRPHIAKIA 124
Query: 208 --------------VHRLYPTVDPSL--------NPEYGEYLKRRCPTPNPDPKAVLYAR 245
+ R+ P + ++ NP+Y + +R P KA+L+ R
Sbjct: 125 ALGVKDSKQLNDEAIKRIAPAIMETVPHAVTVLDNPQYNRW--QRSGMPQTKMKALLHNR 182
Query: 246 N-----------DPETPMIID-----NNYYKNLLNQKGLLIVDQQLASDPRTAPFVEKMA 289
+PE +IID ++Y++ L ++ I+ +++ P+ +A
Sbjct: 183 TLVKLVDAIAPAEPEA-IIIDEFLKRDSYFRYLSDEDR--IIRERVHCLPKAESVHVSVA 239
Query: 290 ADNGYFH-------QQFSRAVGLL 306
A + +Q SRAVGLL
Sbjct: 240 AASIIARYVFLEEMEQLSRAVGLL 263
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 184 GIDVEGTVALLGAHSVGRVHCVNLVHRLYP 213
G + T+ LLGAH VGR H N + +P
Sbjct: 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKHP 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,232,904
Number of Sequences: 62578
Number of extensions: 418585
Number of successful extensions: 1233
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 217
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)