BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045165
         (203 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9HAR2|LPHN3_HUMAN Latrophilin-3 OS=Homo sapiens GN=LPHN3 PE=1 SV=2
          Length = 1447

 Score = 33.9 bits (76), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 62   TQLYMFFFVFHSIALILLFNASSNDPVEKSCR---RSWIPSLCTLLCSLGLIWA 112
            T + M   +F  IAL  +F+ ++    E  C    +SW+     LLC LGL WA
Sbjct: 1016 TLIIMLNVIFLGIALYKMFHHTAILKPESGCLDNIKSWVIGAIALLCLLGLTWA 1069


>sp|Q04053|SNX41_YEAST Sorting nexin-41 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
           S288c) GN=SNX41 PE=1 SV=1
          Length = 625

 Score = 33.5 bits (75), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 14/148 (9%)

Query: 12  MEPKPPHPLHQIAETPTHKLLLKQWLKEEELIL----NRIALKETQIDSVRKEITQLYMF 67
           + P  P PLH I   P++  L       ++ I     N I+   T+I     + T +   
Sbjct: 257 LSPTKPSPLHSILPIPSNSSLRNYNSIWQQHITVKSHNEISNLPTEILQNESQFTHIENL 316

Query: 68  FFVFHSIALILLFNASSNDPVEKSCRRSWIPSLCTLLCSLGLIW-AVRYKSDVESHLEKL 126
           F  +  I   LL N  SN        +S   SL T    LG  + A   ++D+ +    L
Sbjct: 317 FQNYKRIITHLLKNIRSN--------KSHFHSLSTYFAELGAYYNAFSLENDI-TMPNSL 367

Query: 127 LEREKEDGKLLAKCVEELKKKGVEFDLL 154
            E E      + + +  ++K G  FD++
Sbjct: 368 RESENNSNNPMMEIISHIEKTGHSFDVI 395


>sp|P54679|PMA1_DICDI Probable plasma membrane ATPase OS=Dictyostelium discoideum GN=patB
           PE=2 SV=2
          Length = 1058

 Score = 32.7 bits (73), Expect = 1.8,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 93  RRSWIPSLCTLLCSLGLIWAVRYKSDVESHLEKLLEREKEDGKLLAKCVEELKKKGVEFD 152
           R +W+P L   L     +   R      S+  K LEREKE  K L   +EELK      +
Sbjct: 126 RSTWVPKLHQELFENPEVLESRRTKQRASNYRKTLEREKEGIKPLDNILEELKANA---N 182

Query: 153 LLKEVDALRRAKSLRVEA-KAVKKWSARDFVTLFFFSVS 190
            L + +A +R + +   A   VK++   +F+   +  +S
Sbjct: 183 GLTKAEAQKRLEEVGPNAIPDVKRYPILEFLYFMWNPLS 221


>sp|A4IF90|RHG15_BOVIN Rho GTPase-activating protein 15 OS=Bos taurus GN=ARHGAP15 PE=2
           SV=1
          Length = 471

 Score = 31.6 bits (70), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 3/91 (3%)

Query: 72  HSIALILLFNASSNDPVEKSCRRSWIPSLCTLLCSLGLIWAVRYKSD--VESHLEKLLER 129
           H  +L+   + S++D  +K+  +S +    T   SL  +       D    SHL  L ER
Sbjct: 230 HRKSLMFRLHHSASDTSDKNRVKSRLKKFITRRPSLKTLQEKGLIKDQIFGSHLHTLCER 289

Query: 130 EKED-GKLLAKCVEELKKKGVEFDLLKEVDA 159
           EK    + + +C+E ++K+G++ D +  V  
Sbjct: 290 EKSTVPRFVKQCIEAVEKRGLDVDGIYRVSG 320


>sp|Q9LM60|B3GT5_ARATH Probable beta-1,3-galactosyltransferase 5 OS=Arabidopsis thaliana
           GN=B3GALT5 PE=2 SV=1
          Length = 398

 Score = 31.2 bits (69), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 85  NDPVEKSCRRSWIPSLCTLLCSLGLIWAVRYKSDVESHLEKLLEREKEDG--KLLAKCVE 142
           N+ V K    +W+P LC     LG I+  + +S       +L+ + + D   K++ +   
Sbjct: 4   NNKVSKRLTMTWVPLLCISCFFLGAIFTSKLRSASSDSGSQLILQHRRDQELKIVTQDYA 63

Query: 143 ELKKKGVEFDLLKEV 157
             KKK  + D+++EV
Sbjct: 64  HEKKKSQDNDVMEEV 78


>sp|Q642P2|DOP2_XENLA Protein dopey-2 OS=Xenopus laevis GN=dopey2 PE=2 SV=1
          Length = 2270

 Score = 30.8 bits (68), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 82   ASSNDPVE-KSCRRSWIPSLCTLLCSLGLIWAVRYKSDVESHLEKLLEREKEDGKLLAKC 140
            +SS+DP   K+ R + +  L  ++ ++ L+W++  K + E     LL   K    +  K 
Sbjct: 1575 SSSSDPANLKNARNALLEELPRIINTMSLLWSIISKQEREKRPSDLLGTIKASSSVYFKS 1634

Query: 141  VEELKKKGVEF 151
             + LK+K ++F
Sbjct: 1635 TKTLKQKILDF 1645


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,955,779
Number of Sequences: 539616
Number of extensions: 2995210
Number of successful extensions: 11420
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 11411
Number of HSP's gapped (non-prelim): 31
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)