Query 045165
Match_columns 203
No_of_seqs 49 out of 51
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pnv_A Small conductance calci 55.1 24 0.00082 22.7 4.7 30 32-61 10-39 (43)
2 1ci6_A Transcription factor AT 20.7 1.5E+02 0.005 19.9 4.3 34 34-67 26-59 (63)
3 3nmd_A CGMP dependent protein 19.8 2.4E+02 0.0083 19.9 5.6 39 28-66 23-61 (72)
4 2zqm_A Prefoldin beta subunit 19.5 2.5E+02 0.0085 19.9 5.8 37 29-65 75-111 (117)
5 3e98_A GAF domain of unknown f 16.9 2.7E+02 0.0091 23.3 6.1 76 7-83 32-117 (252)
6 2l8s_A Integrin alpha-1; trans 16.7 35 0.0012 23.0 0.4 32 94-126 8-39 (54)
7 2pk8_A Uncharacterized protein 16.4 79 0.0027 23.9 2.3 18 135-152 20-37 (103)
8 2lw1_A ABC transporter ATP-bin 15.1 1.7E+02 0.0059 20.5 3.8 31 30-61 15-45 (89)
9 3dra_A Protein farnesyltransfe 14.4 1.4E+02 0.0046 25.4 3.6 32 6-37 9-40 (306)
10 1wlq_A Geminin; coiled-coil; 2 13.0 3.6E+02 0.012 19.5 5.0 39 28-66 28-66 (83)
No 1
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=55.05 E-value=24 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 045165 32 LLKQWLKEEELILNRIALKETQIDSVRKEI 61 (203)
Q Consensus 32 lLk~W~kee~l~~~Ri~~ke~r~~s~~~Ei 61 (203)
+.-+++...+-+.+||...|+++|++...+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888889999999999999988764
No 2
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.67 E-value=1.5e+02 Score=19.88 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 045165 34 KQWLKEEELILNRIALKETQIDSVRKEITQLYMF 67 (203)
Q Consensus 34 k~W~kee~l~~~Ri~~ke~r~~s~~~Ei~qL~~f 67 (203)
+.=+.+.+-+..+...++.+++.+++|+-+|=..
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677778888888999999998887554
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=19.75 E-value=2.4e+02 Score=19.89 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 045165 28 THKLLLKQWLKEEELILNRIALKETQIDSVRKEITQLYM 66 (203)
Q Consensus 28 ~h~llLk~W~kee~l~~~Ri~~ke~r~~s~~~Ei~qL~~ 66 (203)
.++.+|+.=.+|-..-..||+.+|++++.-..||-.|=+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444444455677777777776666666543
No 4
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=19.46 E-value=2.5e+02 Score=19.89 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 045165 29 HKLLLKQWLKEEELILNRIALKETQIDSVRKEITQLY 65 (203)
Q Consensus 29 h~llLk~W~kee~l~~~Ri~~ke~r~~s~~~Ei~qL~ 65 (203)
+....+.-+.+-+-+...++.+++++..++.++|++.
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666677777777777777776654
No 5
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=16.89 E-value=2.7e+02 Score=23.27 Aligned_cols=76 Identities=20% Similarity=0.150 Sum_probs=31.1
Q ss_pred CCCCcCCCCCCccccccccCchHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHHHHH
Q 045165 7 TKPSIMEPKPPHPLHQIAETPTHKLLLK---QWLKEEELILNRIALKETQIDSVRKEITQLY-------MFFFVFHSIAL 76 (203)
Q Consensus 7 ~~~~~~~~~~~~pL~eIa~s~~h~llLk---~W~kee~l~~~Ri~~ke~r~~s~~~Ei~qL~-------~ff~VFqGviL 76 (203)
|.+.|.+.-..|| .=+..+|.+...|. .-.+--+|..+.++.+++|++.++.++.+|+ ..|--||.+.+
T Consensus 32 ~~~~V~~yL~~~P-dFf~~~~~Ll~~L~lph~~~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l 110 (252)
T 3e98_A 32 DAEQVAAYLSQHP-EFFVEHDELIPELRIPHQPGDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVL 110 (252)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC-HHHhhCHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666 22333444443332 1123344666666666677777776676666 67888999988
Q ss_pred HHHHhhc
Q 045165 77 ILLFNAS 83 (203)
Q Consensus 77 tav~~ss 83 (203)
.++...+
T Consensus 111 ~LL~a~s 117 (252)
T 3e98_A 111 DLLDATS 117 (252)
T ss_dssp HHHHCCS
T ss_pred HHhcCCC
Confidence 8885543
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=16.71 E-value=35 Score=23.03 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=18.8
Q ss_pred ccchHHHhHHHHHHHHHHHHHHhhhHhHHHHHH
Q 045165 94 RSWIPSLCTLLCSLGLIWAVRYKSDVESHLEKL 126 (203)
Q Consensus 94 ~wWiP~~LSLlaSl~~~~av~~K~~~~~~~~~~ 126 (203)
-||+. ++|.++.+..+..+.+-..++=..+|+
T Consensus 8 p~WiI-i~svl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 8 PLWVI-LLSAFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp CTHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred chHHH-HHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 46775 467777777766555555444444443
No 7
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=16.41 E-value=79 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhccCCC
Q 045165 135 KLLAKCVEELKKKGVEFD 152 (203)
Q Consensus 135 ~~l~~~I~eLk~kG~~F~ 152 (203)
..+...++|||+.|-+.|
T Consensus 20 ~~ieekinELk~dG~ePD 37 (103)
T 2pk8_A 20 GEIEEKMNELKMDGFNPD 37 (103)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 467789999999999987
No 8
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=15.14 E-value=1.7e+02 Score=20.51 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 045165 30 KLLLKQWLKEEELILNRIALKETQIDSVRKEI 61 (203)
Q Consensus 30 ~llLk~W~kee~l~~~Ri~~ke~r~~s~~~Ei 61 (203)
||..|+ |||-+-+..+|+.+|+++..+..++
T Consensus 15 KLSyke-qrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 15 KLSYKL-QRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp SCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 6788888899999999988887764
No 9
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=14.43 E-value=1.4e+02 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=26.6
Q ss_pred CCCCCcCCCCCCccccccccCchHHHHHHHHH
Q 045165 6 GTKPSIMEPKPPHPLHQIAETPTHKLLLKQWL 37 (203)
Q Consensus 6 ~~~~~~~~~~~~~pL~eIa~s~~h~llLk~W~ 37 (203)
+|-+||....+.+|+.+|+=++..+.+.+.-.
T Consensus 9 ~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~ 40 (306)
T 3dra_A 9 SDITPVDINTEEPQICQILYDEDYKQIMGLLL 40 (306)
T ss_dssp TTCCCCCCCCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred CCCeecCCCCCCCCceeeeeCHHHHHHHHHHH
Confidence 67788888888999999999999987765443
No 10
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=13.03 E-value=3.6e+02 Score=19.53 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 045165 28 THKLLLKQWLKEEELILNRIALKETQIDSVRKEITQLYM 66 (203)
Q Consensus 28 ~h~llLk~W~kee~l~~~Ri~~ke~r~~s~~~Ei~qL~~ 66 (203)
..+.+|..=.+|-+.+..+|+.++..+..++.|.-+|-.
T Consensus 28 ~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 28 QRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888899999999999999998877654
Done!