Query 045165
Match_columns 203
No_of_seqs 49 out of 51
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 18:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045165.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045165hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pk8a1 d.274.1.1 (A:2-95) Hyp 18.0 33 0.0024 23.8 2.3 18 135-152 11-28 (94)
2 d1rwta_ f.43.1.1 (A:) Chloroph 17.8 33 0.0024 26.2 2.6 33 152-195 37-69 (218)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 16.3 1.2E+02 0.0088 19.3 5.0 32 33-64 54-85 (88)
4 d1u9pa1 a.43.1.1 (A:72-107) Ar 10.0 1.5E+02 0.011 16.6 3.3 21 44-66 7-27 (36)
5 d2f23a1 a.2.1.1 (A:3-77) GreA 10.0 1.7E+02 0.013 18.7 4.1 41 119-159 9-54 (75)
6 d1h2vc3 a.118.1.14 (C:481-790) 9.9 1.2E+02 0.009 24.4 4.1 61 44-106 209-269 (310)
7 d2riga_ a.26.1.3 (A:) Interfer 9.4 1.4E+02 0.01 21.2 3.7 22 125-146 94-115 (119)
8 d1v54d_ f.23.1.1 (D:) Mitochon 8.9 1.4E+02 0.01 21.8 3.6 27 173-199 72-98 (144)
9 d2elba1 a.238.1.1 (A:6-273) DC 8.6 3.5E+02 0.025 19.6 7.8 45 24-68 9-53 (268)
10 d1elka_ a.118.9.2 (A:) Tom1 pr 8.2 1.6E+02 0.012 20.7 3.8 39 113-151 113-151 (153)
No 1
>d2pk8a1 d.274.1.1 (A:2-95) Hypothetical protein PF0899 {Pyrococcus furiosus [TaxId: 2261]}
Probab=18.04 E-value=33 Score=23.82 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhccCCC
Q 045165 135 KLLAKCVEELKKKGVEFD 152 (203)
Q Consensus 135 ~~l~~~I~eLk~kG~~F~ 152 (203)
..+.+.++|||+.|-+.|
T Consensus 11 ~~ie~~inELk~dG~ePD 28 (94)
T d2pk8a1 11 GEIEEKMNELKMDGFNPD 28 (94)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 356788999999999987
No 2
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=17.85 E-value=33 Score=26.22 Aligned_cols=33 Identities=9% Similarity=0.196 Sum_probs=22.0
Q ss_pred CchhhhhHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHh
Q 045165 152 DLLKEVDALRRAKSLRVEAKAVKKWSARDFVTLFFFSVSCLVLA 195 (203)
Q Consensus 152 ~lsKe~~~~~r~k~~~vE~k~~~~w~~~~lv~~~l~~~s~~~l~ 195 (203)
+|+++|+..+|.. ..|+||-+ ++|+|+.|.+.+
T Consensus 37 gls~d~~~~~~~R--eaELKHGR---------~AMLA~vG~~~~ 69 (218)
T d1rwta_ 37 GLSADPETFAKNR--ELEVIHCR---------WAMLGALGCVFP 69 (218)
T ss_dssp CTTCSHHHHHHHH--HHHHHHHH---------HHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHH--HHHHhhce---------ehHhhhcceeeh
Confidence 4678888776654 57787543 557777777654
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.33 E-value=1.2e+02 Score=19.33 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 045165 33 LKQWLKEEELILNRIALKETQIDSVRKEITQL 64 (203)
Q Consensus 33 Lk~W~kee~l~~~Ri~~ke~r~~s~~~Ei~qL 64 (203)
++..+++...+....+.++.+.+.+++++-||
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777788888888888899888776
No 4
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=10.04 E-value=1.5e+02 Score=16.64 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 045165 44 LNRIALKETQIDSVRKEITQLYM 66 (203)
Q Consensus 44 ~~Ri~~ke~r~~s~~~Ei~qL~~ 66 (203)
.++++. .-=.++..||||++.
T Consensus 7 vrkvae--eng~s~ns~iy~~vm 27 (36)
T d1u9pa1 7 VRKVAE--ENGRSVNSEIYQRVM 27 (36)
T ss_dssp HHHHHH--HHTCCHHHHHHHHHH
T ss_pred HHHHHH--HcCcchhHHHHHHHH
Confidence 345553 333478899999874
No 5
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.95 E-value=1.7e+02 Score=18.73 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=29.2
Q ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHhhccC-----CCchhhhhH
Q 045165 119 VESHLEKLLEREKEDGKLLAKCVEELKKKGVE-----FDLLKEVDA 159 (203)
Q Consensus 119 ~~~~~~~~l~~Ek~d~~~l~~~I~eLk~kG~~-----F~lsKe~~~ 159 (203)
.|-+++..|+..+.....+...|.+.|..|=- ++-+|+-++
T Consensus 9 g~~kL~~EL~~l~~~r~ei~~~I~eAr~~GDl~ENaeY~aAke~q~ 54 (75)
T d2f23a1 9 GYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKA 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccccchHHHHHHHHHH
Confidence 46677777877666677889999999999732 444555554
No 6
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.87 E-value=1.2e+02 Score=24.43 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccchHHHhHHHHH
Q 045165 44 LNRIALKETQIDSVRKEITQLYMFFFVFHSIALILLFNASSNDPVEKSCRRSWIPSLCTLLCS 106 (203)
Q Consensus 44 ~~Ri~~ke~r~~s~~~Ei~qL~~ff~VFqGviLtav~~ss~~~~~~~~C~~wWiP~~LSLlaS 106 (203)
...++.+++.+++++.| |=--|..+||+++..+--+...+......=..||+=.++..+.+
T Consensus 209 ~~~~e~~~~~Le~a~~e--qk~Lfl~i~q~Fv~iLse~l~~~e~~~~~~~~~W~~~~~grlk~ 269 (310)
T d1h2vc3 209 EEQIERLQEKVESAQSE--QKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQ 269 (310)
T ss_dssp ---CHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhccccccCCCccccHHHHHHHHHHHH
Confidence 34567777888888888 44456778898886654433211111223456888777777655
No 7
>d2riga_ a.26.1.3 (A:) Interferon-gamma {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=9.38 E-value=1.4e+02 Score=21.20 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=15.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 045165 125 KLLEREKEDGKLLAKCVEELKK 146 (203)
Q Consensus 125 ~~l~~Ek~d~~~l~~~I~eLk~ 146 (203)
+..+-+-+|-++=.+.|.||.+
T Consensus 94 ~L~ki~vnDl~VQrKAi~EL~~ 115 (119)
T d2riga_ 94 NLTRISVDDRLVQRKAVSELSN 115 (119)
T ss_pred HHHhccCCcHHHHHHHHHHHHH
Confidence 3455666777777788888764
No 8
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.87 E-value=1.4e+02 Score=21.79 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=23.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhh
Q 045165 173 VKKWSARDFVTLFFFSVSCLVLALTRI 199 (203)
Q Consensus 173 ~~~w~~~~lv~~~l~~~s~~~l~~~~~ 199 (203)
+--|-.....+++++|++++++...|.
T Consensus 72 ~gewK~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 72 TNEWKTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888899999999999888775
No 9
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.64 E-value=3.5e+02 Score=19.60 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=32.9
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 045165 24 AETPTHKLLLKQWLKEEELILNRIALKETQIDSVRKEITQLYMFF 68 (203)
Q Consensus 24 a~s~~h~llLk~W~kee~l~~~Ri~~ke~r~~s~~~Ei~qL~~ff 68 (203)
-.||..|..+...+.+-+.+..+++..-+.+..+..-.-.++...
T Consensus 9 ~DSP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~ 53 (268)
T d2elba1 9 EDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAAT 53 (268)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999998888877776655554433343333
No 10
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.23 E-value=1.6e+02 Score=20.72 Aligned_cols=39 Identities=26% Similarity=0.140 Sum_probs=23.6
Q ss_pred HHHhhhHhHHHHHHHHHHHHhhHHHHHHHHHHHhhccCC
Q 045165 113 VRYKSDVESHLEKLLEREKEDGKLLAKCVEELKKKGVEF 151 (203)
Q Consensus 113 v~~K~~~~~~~~~~l~~Ek~d~~~l~~~I~eLk~kG~~F 151 (203)
|+.|.......+.+-=+...+-..+...-++||.+|..|
T Consensus 113 Vk~kil~li~~W~~~f~~~p~~~~i~~~y~~Lk~~G~~F 151 (153)
T d1elka_ 113 VHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEF 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHCCCCC
Confidence 555555554444432222334466777778899999887
Done!