BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045166
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 128/305 (41%), Gaps = 61/305 (20%)
Query: 8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
N IP L NC+ L ++ L N+++ P W+G L L +L L +N F G I
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 68 SCGFSKLRIIDLSDNRFTGKLPSNSFL--------------------------CWNAMKI 101
C L +DL+ N F G +P+ F C A +
Sbjct: 533 DC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 102 VNTSALRYLQ----DVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII--- 154
+ +R Q P ++S V G + S T ++ G +M + N+L+G I
Sbjct: 591 LEFQGIRSEQLNRLSTRNPC-NITSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 155 -----------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNV 195
L +N G+IP + +L+GL + GRIPQ ++ LT L ++
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 196 SDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCD----SGEAPTNEDHTEGSEES 251
S+N L+GPIP+ QF TF F N GLCG PL + CD G A H E
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENL 767
Query: 252 LFSGA 256
F GA
Sbjct: 768 YFQGA 772
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 81/212 (38%), Gaps = 63/212 (29%)
Query: 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
YL+N N F +IP +L NCS+L L L N +S T PS LG+L KL L L N+ G
Sbjct: 396 LYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG- 453
Query: 62 IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
E P+ L + L N TG++PS C N
Sbjct: 454 -EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN------------------------ 488
Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL------- 174
L I LSNNR G IP I L+ L
Sbjct: 489 ----------------------------LNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 175 -QFSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205
FSG IP +L + L + +++ N G IP
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 89/211 (42%), Gaps = 13/211 (6%)
Query: 7 ENTFLQRIPRSLIN-CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
EN F IP L C L L L N P + G+ L L L SN F G E P
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELP 332
Query: 66 R-TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNV 124
T L+++DLS N F+G+LP + ++ ++ S+ + +L Q N
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 392
Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------F 176
L Y + G++ + L + LS N G IP+S+ +L L+
Sbjct: 393 LQEL-YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 177 SGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
G IPQ+L + L + N LTG IP G
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
MF + N IP+ + + L L LG N IS + P +G L LN+L L SN G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 61 IIEEPRTSCGFSKLRIIDLSDNRFTGKLP 89
I P+ + L IDLS+N +G +P
Sbjct: 692 RI--PQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 38/232 (16%)
Query: 8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
N F IP L +CS L+ L + N++S F + T +L +L + SN F G P
Sbjct: 207 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG----PIP 261
Query: 68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYG--------- 118
L+ + L++N+FTG++P + + ++ S + V +G
Sbjct: 262 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 119 QVSSNVLGTYDYSRTMNSKG-RV--MTYNK--------IPNILAGII---LSNNRFDGAI 164
S+N G + +G +V +++N+ + N+ A ++ LS+N F G I
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Query: 165 PASIAN----------LKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
++ L+ F+G+IP L+ + L ++S NYL+G IP
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 84/225 (37%), Gaps = 68/225 (30%)
Query: 17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI 76
SL +CS L+FL + N + FP + KLN L +
Sbjct: 118 SLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLN-----------------------SLEV 152
Query: 77 IDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNS 136
+DLS N +G N + V + L+ + ++S +V D SR +N
Sbjct: 153 LDLSANSISGA---------NVVGWVLSDGCGELKHLAISGNKISGDV----DVSRCVN- 198
Query: 137 KGRVMTYNKIPNILAGIILSNNRFDGAIP-----ASIANL--KGLQFSGRIPQQLAELTF 189
L + +S+N F IP +++ +L G + SG + ++ T
Sbjct: 199 -------------LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 190 LAFFNVSDNYLTGPIP----QGKQFATFDNTSFDGN-----SGLC 225
L N+S N GPIP + Q+ + F G SG C
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 290
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 125/288 (43%), Gaps = 61/288 (21%)
Query: 8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
N IP L NC+ L ++ L N+++ P W+G L L +L L +N F G I
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 68 SCGFSKLRIIDLSDNRFTGKLPSNSFL--------------------------CWNAMKI 101
C L +DL+ N F G +P+ F C A +
Sbjct: 536 DC--RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 102 VNTSALRYLQ----DVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII--- 154
+ +R Q P ++S V G + S T ++ G +M + N+L+G I
Sbjct: 594 LEFQGIRSEQLNRLSTRNPC-NITSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 155 -----------LSNNRFDGAIPASIANLKGL--------QFSGRIPQQLAELTFLAFFNV 195
L +N G+IP + +L+GL + GRIPQ ++ LT L ++
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 196 SDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPTNED 243
S+N L+GPIP+ QF TF F N GLCG PL + CD P+N D
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 81/214 (37%), Gaps = 63/214 (29%)
Query: 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI 61
YL+N N F +IP +L NCS+L L L N +S T PS LG+L KL L L N+ G
Sbjct: 399 LYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG- 456
Query: 62 IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS 121
E P+ L + L N TG++PS C N
Sbjct: 457 -EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN------------------------ 491
Query: 122 SNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGL------- 174
L I LSNNR G IP I L+ L
Sbjct: 492 ----------------------------LNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 175 -QFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
FSG IP +L + L + +++ N G IP
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 89/211 (42%), Gaps = 13/211 (6%)
Query: 7 ENTFLQRIPRSLIN-CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEP 65
EN F IP L C L L L N P + G+ L L L SN F G E P
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELP 335
Query: 66 R-TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNV 124
T L+++DLS N F+G+LP + ++ ++ S+ + +L Q N
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 125 LGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------F 176
L Y + G++ + L + LS N G IP+S+ +L L+
Sbjct: 396 LQEL-YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 177 SGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207
G IPQ+L + L + N LTG IP G
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60
MF + N IP+ + + L L LG N IS + P +G L LN+L L SN G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 61 IIEEPRTSCGFSKLRIIDLSDNRFTGKLP 89
I P+ + L IDLS+N +G +P
Sbjct: 695 RI--PQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 38/232 (16%)
Query: 8 NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRT 67
N F IP L +CS L+ L + N++S F + T +L +L + SN F G P
Sbjct: 210 NNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG----PIP 264
Query: 68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYG--------- 118
L+ + L++N+FTG++P + + ++ S + V +G
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 119 QVSSNVLGTYDYSRTMNSKG-RV--MTYNK--------IPNILAGII---LSNNRFDGAI 164
S+N G + +G +V +++N+ + N+ A ++ LS+N F G I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 165 PASIAN----------LKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206
++ L+ F+G+IP L+ + L ++S NYL+G IP
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 43/171 (25%)
Query: 71 FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDY 130
+ L ++DLS N +G N + V + L+ + ++S +V D
Sbjct: 150 LNSLEVLDLSANSISGA---------NVVGWVLSDGCGELKHLAISGNKISGDV----DV 196
Query: 131 SRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIP-----ASIANL--KGLQFSGRIPQQ 183
SR +N L + +S+N F IP +++ +L G + SG +
Sbjct: 197 SRCVN--------------LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242
Query: 184 LAELTFLAFFNVSDNYLTGPIP----QGKQFATFDNTSFDGN-----SGLC 225
++ T L N+S N GPIP + Q+ + F G SG C
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGAC 293
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 14 IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
IP L L L N +S T P + +LP L + N G I P + FSK
Sbjct: 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSK 174
Query: 74 L-RIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVL---GTYD 129
L + +S NR TGK+P ++ + +S N+L +
Sbjct: 175 LFTSMTISRNRLTGKIPPT------------------FANLNLAFVDLSRNMLEGDASVL 216
Query: 130 YSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTF 189
+ N++ + N + L + LS N +G +L+ + G +PQ L +L F
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKN-LNGL------DLRNNRIYGTLPQGLTQLKF 269
Query: 190 LAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL 229
L NVS N L G IPQG FD +++ N LCG PL
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 22 SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
+KL+ L L NQISD P L L KL L L N I + R CG L +++L
Sbjct: 151 TKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN----HISDLRALCGLKNLDVLEL 202
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 22 SKLEFLGLGINQISDT--FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
S++++L L +N+I DT F + L L L+ N Y + + F+KL+ +DL
Sbjct: 144 SRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYNFIYDV----KGQVVFAKLKTLDL 198
Query: 80 SDNR--FTG-KLPSNSFLCWNAMK----IVNTSALRYLQDV 113
S N+ F G + S + + W +++ ++ ALR+ Q++
Sbjct: 199 SSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 22 SKLEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80
S++++L L +N+I F + L L L+ N Y + + F+KL+ +DLS
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV----KGQVVFAKLKTLDLS 199
Query: 81 DNR--FTG-KLPSNSFLCWNAMK----IVNTSALRYLQDV 113
N+ F G + S + + W +++ ++ ALR+ Q++
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77
L +KL+ L L NQISD P L L KL L L N I + R G L ++
Sbjct: 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVL 202
Query: 78 DL 79
+L
Sbjct: 203 EL 204
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77
L +KL+ L L NQISD P L L KL L L N I + R G L ++
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVL 205
Query: 78 DL 79
+L
Sbjct: 206 EL 207
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 14 IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSK 73
+P+ L N L + L N+IS + +L LIL N I PRT G
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI--PPRTFDGLKS 103
Query: 74 LRIIDLSDNRFTGKLPSNSF 93
LR++ L N + +P +F
Sbjct: 104 LRLLSLHGNDIS-VVPEGAF 122
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
+KL+ L L NQISD P L L KL L L N I + R G L +++L
Sbjct: 153 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLEL 205
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
+KL+ L L NQISD P L L KL L L N I + R G L +++L
Sbjct: 175 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLEL 227
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
+KL+ L L NQISD P L L KL L L N I + R G L +++L
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLEL 207
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
+KL+ L L NQISD P L L KL L L N I + R G L +++L
Sbjct: 173 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLEL 225
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
+KL+ L L NQISD P L L KL L L N I + R G L +++L
Sbjct: 173 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79
+KL+ L L NQISD P L L KL L L N I + R G L +++L
Sbjct: 173 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLEL 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,235,768
Number of Sequences: 62578
Number of extensions: 384672
Number of successful extensions: 775
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 38
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)