Query 045166
Match_columns 305
No_of_seqs 422 out of 3799
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 3.1E-27 6.8E-32 236.6 17.4 217 1-228 383-611 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.8E-24 3.9E-29 216.7 18.6 217 2-228 336-588 (968)
3 KOG4194 Membrane glycoprotein 99.8 3.7E-20 8.1E-25 165.5 2.1 209 2-240 249-484 (873)
4 KOG0617 Ras suppressor protein 99.8 7.7E-21 1.7E-25 145.7 -3.2 173 19-224 30-212 (264)
5 KOG0444 Cytoskeletal regulator 99.7 1.8E-19 3.9E-24 162.5 -0.7 81 147-229 267-380 (1255)
6 PLN03150 hypothetical protein; 99.7 3.5E-17 7.6E-22 155.6 11.8 118 47-234 419-538 (623)
7 KOG4194 Membrane glycoprotein 99.7 1.6E-18 3.4E-23 155.2 1.4 211 1-221 176-402 (873)
8 KOG4237 Extracellular matrix p 99.7 1.1E-18 2.3E-23 149.7 0.2 226 2-230 71-365 (498)
9 KOG0472 Leucine-rich repeat pr 99.7 4.4E-19 9.5E-24 152.3 -3.8 212 2-223 72-309 (565)
10 KOG0472 Leucine-rich repeat pr 99.7 1.3E-18 2.8E-23 149.5 -2.4 212 3-224 211-541 (565)
11 KOG0444 Cytoskeletal regulator 99.7 2.2E-18 4.9E-23 155.5 -1.5 44 179-222 236-279 (1255)
12 KOG0618 Serine/threonine phosp 99.6 5E-17 1.1E-21 152.4 0.5 215 1-224 244-489 (1081)
13 KOG0617 Ras suppressor protein 99.6 7.4E-17 1.6E-21 123.9 -4.2 168 3-205 38-216 (264)
14 PLN03210 Resistant to P. syrin 99.5 6E-14 1.3E-18 142.4 13.9 101 2-109 593-693 (1153)
15 PRK15387 E3 ubiquitin-protein 99.5 2.4E-14 5.2E-19 136.9 9.3 181 1-206 245-463 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 4.4E-14 9.6E-19 135.6 8.8 93 1-108 202-294 (754)
17 PRK15370 E3 ubiquitin-protein 99.5 5.6E-14 1.2E-18 134.9 8.2 92 2-108 182-273 (754)
18 PRK15387 E3 ubiquitin-protein 99.5 9.6E-14 2.1E-18 132.9 9.0 193 1-225 225-459 (788)
19 PLN03210 Resistant to P. syrin 99.4 7.7E-13 1.7E-17 134.5 13.3 63 1-64 637-699 (1153)
20 PLN03150 hypothetical protein; 99.4 1.3E-13 2.8E-18 131.3 7.2 103 2-107 422-525 (623)
21 KOG0532 Leucine-rich repeat (L 99.4 6.3E-14 1.4E-18 125.7 -0.2 165 3-202 80-248 (722)
22 KOG0532 Leucine-rich repeat (L 99.3 2.7E-14 5.7E-19 128.0 -4.7 183 3-224 55-247 (722)
23 cd00116 LRR_RI Leucine-rich re 99.3 2.3E-13 5E-18 119.7 -1.4 105 2-108 55-176 (319)
24 KOG4237 Extracellular matrix p 99.3 6.6E-13 1.4E-17 114.4 0.7 98 4-107 52-150 (498)
25 KOG0618 Serine/threonine phosp 99.3 2E-13 4.2E-18 128.6 -2.8 213 1-222 48-321 (1081)
26 COG4886 Leucine-rich repeat (L 99.2 8.8E-12 1.9E-16 113.1 5.1 99 2-107 120-219 (394)
27 cd00116 LRR_RI Leucine-rich re 99.1 7.1E-12 1.5E-16 110.2 0.6 107 1-110 26-150 (319)
28 PF14580 LRR_9: Leucine-rich r 99.1 7.5E-11 1.6E-15 93.6 4.6 95 5-108 4-99 (175)
29 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.5E-15 76.4 4.4 61 22-84 1-61 (61)
30 PF14580 LRR_9: Leucine-rich r 99.1 2.8E-11 6E-16 96.1 1.2 102 1-109 22-125 (175)
31 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.5E-16 102.7 -0.7 135 18-203 280-414 (490)
32 COG4886 Leucine-rich repeat (L 99.0 1.5E-10 3.3E-15 105.1 4.5 154 1-207 143-296 (394)
33 KOG3207 Beta-tubulin folding c 99.0 1.4E-10 3.1E-15 101.4 2.5 176 17-222 141-337 (505)
34 PF13855 LRR_8: Leucine rich r 99.0 3.5E-10 7.6E-15 74.0 3.5 58 1-58 4-61 (61)
35 KOG1259 Nischarin, modulator o 98.8 7E-10 1.5E-14 93.0 0.1 126 2-162 288-413 (490)
36 KOG3207 Beta-tubulin folding c 98.6 8.4E-09 1.8E-13 90.5 -0.2 179 1-202 149-340 (505)
37 KOG0531 Protein phosphatase 1, 98.5 3.4E-08 7.4E-13 90.2 2.5 82 18-107 91-172 (414)
38 KOG0531 Protein phosphatase 1, 98.4 2.9E-08 6.3E-13 90.6 -0.9 82 20-108 70-151 (414)
39 KOG1859 Leucine-rich repeat pr 98.4 9.7E-09 2.1E-13 95.4 -4.6 97 2-107 168-264 (1096)
40 PF12799 LRR_4: Leucine Rich r 98.4 5E-07 1.1E-11 54.5 3.5 38 22-60 1-38 (44)
41 KOG1859 Leucine-rich repeat pr 98.2 1.2E-07 2.6E-12 88.3 -2.6 99 1-107 190-289 (1096)
42 PF12799 LRR_4: Leucine Rich r 98.2 2.2E-06 4.8E-11 51.6 3.2 35 1-36 4-38 (44)
43 KOG4658 Apoptotic ATPase [Sign 98.1 3.1E-06 6.7E-11 83.5 5.7 80 23-106 546-627 (889)
44 KOG4579 Leucine-rich repeat (L 98.1 2.9E-07 6.4E-12 68.8 -1.5 99 2-107 31-133 (177)
45 KOG4579 Leucine-rich repeat (L 98.1 3E-07 6.6E-12 68.7 -1.5 86 2-93 57-143 (177)
46 KOG1909 Ran GTPase-activating 97.9 6.9E-07 1.5E-11 76.6 -2.7 106 1-108 95-224 (382)
47 KOG2982 Uncharacterized conser 97.9 5.3E-06 1.1E-10 70.0 2.0 88 20-109 69-158 (418)
48 KOG4658 Apoptotic ATPase [Sign 97.9 5.5E-06 1.2E-10 81.7 1.8 85 17-105 566-650 (889)
49 KOG2120 SCF ubiquitin ligase, 97.7 6.9E-07 1.5E-11 75.2 -5.6 15 145-159 310-324 (419)
50 KOG1644 U2-associated snRNP A' 97.7 3.4E-05 7.4E-10 61.6 3.7 101 2-106 46-149 (233)
51 KOG1644 U2-associated snRNP A' 97.7 5.6E-05 1.2E-09 60.4 4.8 82 21-107 41-123 (233)
52 KOG2982 Uncharacterized conser 97.7 2.2E-05 4.9E-10 66.3 2.4 83 2-85 75-159 (418)
53 KOG1909 Ran GTPase-activating 97.6 1.7E-05 3.7E-10 68.3 1.0 83 2-85 34-133 (382)
54 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.7E-10 75.1 1.8 142 22-204 122-266 (699)
55 PRK15386 type III secretion pr 97.3 0.00081 1.8E-08 60.4 7.5 64 18-90 48-112 (426)
56 PRK15386 type III secretion pr 97.3 0.0019 4.2E-08 58.1 9.2 68 1-84 55-124 (426)
57 KOG3665 ZYG-1-like serine/thre 97.0 0.00024 5.1E-09 68.6 1.1 140 1-167 125-269 (699)
58 PF00560 LRR_1: Leucine Rich R 97.0 0.00038 8.3E-09 35.0 1.2 22 149-171 1-22 (22)
59 KOG2739 Leucine-rich acidic nu 96.9 0.00061 1.3E-08 56.7 2.4 88 14-107 35-126 (260)
60 KOG2739 Leucine-rich acidic nu 96.8 0.00055 1.2E-08 56.9 1.3 64 20-85 63-129 (260)
61 COG5238 RNA1 Ran GTPase-activa 96.7 0.0011 2.4E-08 55.7 2.6 167 17-201 25-227 (388)
62 PF00560 LRR_1: Leucine Rich R 96.6 0.00084 1.8E-08 33.7 0.8 12 48-59 2-13 (22)
63 PF13306 LRR_5: Leucine rich r 96.5 0.0088 1.9E-07 44.8 6.4 86 15-106 5-90 (129)
64 COG5238 RNA1 Ran GTPase-activa 96.5 0.0033 7.1E-08 52.9 3.9 157 2-162 34-228 (388)
65 KOG2123 Uncharacterized conser 96.3 0.00017 3.7E-09 60.6 -4.6 96 3-103 24-123 (388)
66 KOG2120 SCF ubiquitin ligase, 96.1 0.00013 2.7E-09 61.9 -6.2 81 24-106 187-269 (419)
67 smart00369 LRR_TYP Leucine-ric 95.6 0.011 2.4E-07 30.8 2.2 23 71-94 1-23 (26)
68 smart00370 LRR Leucine-rich re 95.6 0.011 2.4E-07 30.8 2.2 23 71-94 1-23 (26)
69 PF13306 LRR_5: Leucine rich r 95.6 0.038 8.2E-07 41.3 6.0 96 3-106 17-112 (129)
70 PF13504 LRR_7: Leucine rich r 95.4 0.0081 1.7E-07 28.0 1.0 13 73-85 2-14 (17)
71 PF13504 LRR_7: Leucine rich r 95.3 0.011 2.4E-07 27.5 1.2 13 149-161 2-14 (17)
72 KOG0473 Leucine-rich repeat pr 94.9 0.00064 1.4E-08 55.8 -6.1 84 17-106 37-120 (326)
73 KOG2123 Uncharacterized conser 94.4 0.0019 4E-08 54.5 -4.6 81 20-107 17-98 (388)
74 KOG0473 Leucine-rich repeat pr 93.4 0.0013 2.8E-08 54.0 -7.0 79 2-85 46-124 (326)
75 smart00370 LRR Leucine-rich re 92.2 0.14 3E-06 26.5 2.1 19 21-40 1-19 (26)
76 smart00369 LRR_TYP Leucine-ric 92.2 0.14 3E-06 26.5 2.1 19 21-40 1-19 (26)
77 PF13516 LRR_6: Leucine Rich r 91.5 0.059 1.3E-06 27.4 0.1 19 148-166 2-20 (24)
78 smart00364 LRR_BAC Leucine-ric 87.8 0.36 7.8E-06 25.1 1.3 18 72-90 2-19 (26)
79 smart00365 LRR_SD22 Leucine-ri 86.7 0.57 1.2E-05 24.4 1.7 13 22-34 2-14 (26)
80 smart00368 LRR_RI Leucine rich 81.1 1.2 2.5E-05 23.6 1.5 14 188-201 2-15 (28)
81 PF02439 Adeno_E3_CR2: Adenovi 78.2 3 6.5E-05 23.8 2.6 15 265-279 7-21 (38)
82 PF04478 Mid2: Mid2 like cell 76.3 1.6 3.4E-05 33.5 1.5 9 260-268 52-60 (154)
83 PF08114 PMP1_2: ATPase proteo 75.9 5.4 0.00012 23.0 3.2 9 284-292 30-38 (43)
84 KOG3864 Uncharacterized conser 75.7 0.69 1.5E-05 37.5 -0.6 83 22-106 101-185 (221)
85 TIGR00864 PCC polycystin catio 75.3 1.3 2.8E-05 49.0 1.1 33 154-202 1-33 (2740)
86 PF15069 FAM163: FAM163 family 70.2 9.1 0.0002 29.1 4.2 27 262-288 7-33 (143)
87 PF04478 Mid2: Mid2 like cell 70.0 2.7 5.8E-05 32.3 1.4 19 261-279 49-67 (154)
88 PTZ00382 Variant-specific surf 67.0 4.1 8.8E-05 28.9 1.8 10 271-280 78-87 (96)
89 PF15102 TMEM154: TMEM154 prot 63.6 5.3 0.00011 30.5 1.9 6 260-265 59-64 (146)
90 PF03302 VSP: Giardia variant- 61.3 5.7 0.00012 36.2 2.1 24 259-282 367-390 (397)
91 PF13908 Shisa: Wnt and FGF in 56.6 19 0.0004 28.7 4.1 7 262-268 80-86 (179)
92 PF01102 Glycophorin_A: Glycop 56.2 3.7 8E-05 30.5 -0.0 14 264-277 67-80 (122)
93 KOG3864 Uncharacterized conser 52.8 4.7 0.0001 32.9 0.1 63 73-161 102-165 (221)
94 PF01102 Glycophorin_A: Glycop 49.9 7.1 0.00015 29.0 0.6 13 260-272 67-79 (122)
95 KOG1947 Leucine rich repeat pr 48.4 6.7 0.00015 36.2 0.4 89 18-107 210-305 (482)
96 TIGR00864 PCC polycystin catio 48.3 11 0.00023 42.4 1.8 32 4-35 1-32 (2740)
97 PF15050 SCIMP: SCIMP protein 47.7 2.9 6.2E-05 30.5 -1.7 9 286-294 32-40 (133)
98 KOG1947 Leucine rich repeat pr 46.1 7.8 0.00017 35.7 0.5 86 17-104 238-328 (482)
99 PF06697 DUF1191: Protein of u 42.8 44 0.00095 28.7 4.3 11 262-272 215-225 (278)
100 smart00459 Sorb Sorbin homolog 42.0 15 0.00033 22.3 1.0 18 285-302 29-46 (50)
101 PF15050 SCIMP: SCIMP protein 41.3 22 0.00047 26.1 1.9 11 258-268 8-18 (133)
102 KOG3763 mRNA export factor TAP 39.8 17 0.00036 34.3 1.5 82 20-103 216-307 (585)
103 PF15102 TMEM154: TMEM154 prot 38.9 38 0.00083 26.0 3.1 14 258-271 54-67 (146)
104 PF02208 Sorb: Sorbin homologo 37.9 19 0.0004 21.4 1.0 22 283-304 24-45 (47)
105 smart00367 LRR_CC Leucine-rich 36.0 27 0.00058 17.7 1.4 11 22-32 2-12 (26)
106 PF10762 DUF2583: Protein of u 35.5 46 0.001 22.7 2.7 15 284-298 71-85 (89)
107 PF06305 DUF1049: Protein of u 35.5 13 0.00029 24.1 0.2 13 268-280 26-38 (68)
108 PF04971 Lysis_S: Lysis protei 35.3 30 0.00064 22.7 1.7 18 262-279 34-51 (68)
109 KOG3763 mRNA export factor TAP 34.1 21 0.00046 33.6 1.2 58 2-61 222-285 (585)
110 PRK10692 hypothetical protein; 33.8 52 0.0011 22.7 2.8 15 284-298 71-85 (92)
111 PF06040 Adeno_E3: Adenovirus 32.5 44 0.00095 24.3 2.3 30 268-297 92-122 (127)
112 PHA03099 epidermal growth fact 32.2 38 0.00082 25.3 2.0 23 259-281 98-120 (139)
113 PRK11677 hypothetical protein; 31.5 9 0.00019 29.0 -1.3 16 268-283 8-23 (134)
114 PF11980 DUF3481: Domain of un 31.3 22 0.00047 24.3 0.6 23 258-280 15-37 (87)
115 PF07204 Orthoreo_P10: Orthore 31.3 22 0.00048 24.8 0.7 28 258-287 41-68 (98)
116 PF13120 DUF3974: Domain of un 30.7 6.4 0.00014 27.4 -2.0 21 266-286 11-31 (126)
117 PF04995 CcmD: Heme exporter p 30.4 18 0.00039 21.6 0.1 9 266-274 11-19 (46)
118 TIGR00985 3a0801s04tom mitocho 29.8 16 0.00034 28.2 -0.3 10 288-297 37-46 (148)
119 PF14991 MLANA: Protein melan- 29.2 15 0.00033 26.7 -0.4 11 275-285 39-49 (118)
120 PF03672 UPF0154: Uncharacteri 28.2 60 0.0013 21.1 2.2 15 266-280 3-17 (64)
121 PF05795 Plasmodium_Vir: Plasm 27.8 82 0.0018 27.8 4.0 27 269-295 289-315 (354)
122 PF14610 DUF4448: Protein of u 27.5 51 0.0011 26.5 2.3 18 259-276 157-174 (189)
123 PF12768 Rax2: Cortical protei 26.4 61 0.0013 28.0 2.7 14 72-85 64-77 (281)
124 PF15179 Myc_target_1: Myc tar 25.9 42 0.00091 26.7 1.4 17 263-279 22-38 (197)
125 COG3105 Uncharacterized protei 25.8 12 0.00027 27.8 -1.4 17 267-283 12-28 (138)
126 PF10808 DUF2542: Protein of u 24.6 56 0.0012 21.8 1.6 9 280-288 17-25 (79)
127 PF04689 S1FA: DNA binding pro 24.1 27 0.00059 22.4 0.1 9 268-276 21-29 (69)
128 PF08374 Protocadherin: Protoc 23.4 1.4E+02 0.003 24.6 4.0 7 259-265 39-45 (221)
129 PF02404 SCF: Stem cell factor 23.1 27 0.0006 29.4 0.0 23 258-280 214-236 (273)
130 PF06295 DUF1043: Protein of u 23.0 31 0.00067 25.9 0.2 14 264-277 4-17 (128)
131 PF14004 DUF4227: Protein of u 22.9 1.3E+02 0.0029 20.0 3.2 29 275-303 14-42 (71)
132 KOG3637 Vitronectin receptor, 22.9 49 0.0011 34.3 1.7 30 259-290 978-1007(1030)
133 COG3216 Uncharacterized protei 22.7 26 0.00056 27.7 -0.2 31 258-288 134-164 (184)
134 PF15179 Myc_target_1: Myc tar 22.2 46 0.00099 26.5 1.0 24 258-281 21-44 (197)
135 PF02544 Steroid_dh: 3-oxo-5-a 21.3 96 0.0021 23.9 2.7 18 283-300 126-143 (150)
136 PF02009 Rifin_STEVOR: Rifin/s 21.0 75 0.0016 27.8 2.2 8 276-283 269-276 (299)
137 PRK01821 hypothetical protein; 20.7 1.3E+02 0.0028 22.8 3.2 7 286-292 116-122 (133)
138 PF06365 CD34_antigen: CD34/Po 20.3 75 0.0016 26.0 1.9 7 260-266 101-107 (202)
139 PF15122 TMEM206: TMEM206 prot 20.3 46 0.00099 27.8 0.7 17 285-301 276-292 (298)
140 PF12216 m04gp34like: Immune e 20.2 1E+02 0.0022 26.5 2.8 10 263-272 235-244 (272)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.1e-27 Score=236.60 Aligned_cols=217 Identities=26% Similarity=0.382 Sum_probs=178.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+ ..+++|+.|+++
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~ 460 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLA 460 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECc
Confidence 368999999999999999999999999999999999899999999999999999999999888777 788999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCccc---ccccccccccEEEcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVM---TYNKIPNILAGIILS 156 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~L~~LdLs 156 (305)
+|++.|.+|.. + ..++|+.|++++|...+..+ ..+... .+..+++..+.+.. .....+++|+.|||+
T Consensus 461 ~n~~~~~~p~~-~-~~~~L~~L~ls~n~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 531 (968)
T PLN00113 461 RNKFFGGLPDS-F-GSKRLENLDLSRNQFSGAVP-------RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531 (968)
T ss_pred CceeeeecCcc-c-ccccceEEECcCCccCCccC-------hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence 99999888853 3 56889999998875543222 111111 12233344443332 233447889999999
Q ss_pred CCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcC
Q 045166 157 NNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 157 ~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~ 228 (305)
+|.++|.+|..+.++++|+ ++|.+|..+..+++|++|++++|+++|.+|...++.++....+.|||.+||.+
T Consensus 532 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred CCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999888876 78899999999999999999999999999999999999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.8e-24 Score=216.75 Aligned_cols=217 Identities=21% Similarity=0.314 Sum_probs=135.7
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhh------------------------cCCCCCCEEEccccc
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWL------------------------GTLPKLNVLILRSNI 57 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~------------------------~~l~~L~~L~L~~N~ 57 (305)
+|++++|.+++.+|..++.+++|+.|++++|++++.+|..+ +.+++|+.|++++|+
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 45555555555555555555555555555555555445444 445555555555555
Q ss_pred ceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccccccccccccc
Q 045166 58 FYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSK 137 (305)
Q Consensus 58 l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (305)
+++.+|..+ ..+++|+.||+++|.+++.+|.. +..+++|+.|++++|...+. +|.......+..+++..+
T Consensus 416 l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~-------~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 416 FSGELPSEF--TKLPLVYFLDISNNNLQGRINSR-KWDMPSLQMLSLARNKFFGG-------LPDSFGSKRLENLDLSRN 485 (968)
T ss_pred eeeECChhH--hcCCCCCEEECcCCcccCccChh-hccCCCCcEEECcCceeeee-------cCcccccccceEEECcCC
Confidence 555555444 45555555555555555444433 44455555555555433321 121111112233444444
Q ss_pred Cccc---ccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166 138 GRVM---TYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 138 ~~~~---~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 206 (305)
.+.. .....+++|+.|+|++|++++.+|..+.++++|+ ++|.+|..+..+++|+.|||++|+++|.+|.
T Consensus 486 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 486 QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 4332 2234477899999999999999999998888776 7788999999999999999999999999997
Q ss_pred C-CCCCccCCCccCCCCCCCCcC
Q 045166 207 G-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 207 ~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
. ..+..+..+++++|+..+..|
T Consensus 566 ~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 566 NLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hHhcCcccCEEeccCCcceeeCC
Confidence 5 456678888899998776544
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=3.7e-20 Score=165.49 Aligned_cols=209 Identities=22% Similarity=0.251 Sum_probs=153.6
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.|.|..|.+...-..+|-.|.++++|+|..|+++..-.+++.+++.|+.|+||+|.+....+..+ .-.++|+.|||++
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~ 326 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSS 326 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh--hhcccceeEeccc
Confidence 35566677765556677788888888888888887666778888888888888888888777777 5567888888888
Q ss_pred CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD 161 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~ 161 (305)
|+++ .++++.|..+..|++|++++|.... +....+..+++|+.|||++|.++
T Consensus 327 N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~---------------------------l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 327 NRIT-RLDEGSFRVLSQLEELNLSHNSIDH---------------------------LAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred cccc-cCChhHHHHHHHhhhhcccccchHH---------------------------HHhhHHHHhhhhhhhcCcCCeEE
Confidence 8888 7887778888888888888753211 11112234778888888888888
Q ss_pred cccchh---hc---CCCCceeee----cCC-ccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcCCC
Q 045166 162 GAIPAS---IA---NLKGLQFSG----RIP-QQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS 230 (305)
Q Consensus 162 g~~p~~---~~---~L~~L~l~g----~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~~~ 230 (305)
+.|-+. |. .|+.|.+.| .|| ..|..+..|++|||.+|.+...-|....-..++.+.+..-.++|+|.+.
T Consensus 379 ~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 379 WCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred EEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHH
Confidence 766542 33 344444555 344 3788999999999999999877776543336777778888899998655
Q ss_pred ----------------CCCCCCCCCC
Q 045166 231 ----------------KGCDSGEAPT 240 (305)
Q Consensus 231 ----------------~~c~~~~~~~ 240 (305)
..|..|+...
T Consensus 459 Wl~qWl~~~~lq~sv~a~CayPe~La 484 (873)
T KOG4194|consen 459 WLAQWLYRRKLQSSVIAKCAYPEPLA 484 (873)
T ss_pred HHHHHHHhcccccceeeeccCCcccc
Confidence 4688887654
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=7.7e-21 Score=145.69 Aligned_cols=173 Identities=23% Similarity=0.372 Sum_probs=107.0
Q ss_pred hcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166 19 INCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA 98 (305)
Q Consensus 19 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~ 98 (305)
.++++.+.|.|++|+++. +|+.+..+.+|+.|++++|++.. +|..+ ..++.|+.|+++-|++. .+|.+ |+.++.
T Consensus 30 f~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie~-lp~~i--ssl~klr~lnvgmnrl~-~lprg-fgs~p~ 103 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIEE-LPTSI--SSLPKLRILNVGMNRLN-ILPRG-FGSFPA 103 (264)
T ss_pred cchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhhh-cChhh--hhchhhhheecchhhhh-cCccc-cCCCch
Confidence 345555566666666654 55556666666666666666653 55555 55666666666666665 56655 666666
Q ss_pred chhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee
Q 045166 99 MKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG 178 (305)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g 178 (305)
|+.|+++.|+.-. ..+|++++. +..|+.|.|++|.|. .+|+.+++|++|++.+
T Consensus 104 levldltynnl~e------~~lpgnff~--------------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 104 LEVLDLTYNNLNE------NSLPGNFFY--------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILS 156 (264)
T ss_pred hhhhhcccccccc------ccCCcchhH--------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEe
Confidence 6666665543221 112222211 455666777777777 7777777777777433
Q ss_pred -------cCCccccCCCCCCEEeccCCcceecCCCCCCCCcc---CCCccCCCCCC
Q 045166 179 -------RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATF---DNTSFDGNSGL 224 (305)
Q Consensus 179 -------~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l---~~~~~~gNp~l 224 (305)
.+|.+++.++.|+.|.+.+|+++-..|+..++... ....++.|||.
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 57888999999999999999999666654443322 22345667765
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.8e-19 Score=162.50 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=55.8
Q ss_pred cccccEEEccCCccccccchhhcCCCCce--------------------------------eeecCCccccCCCCCCEEe
Q 045166 147 PNILAGIILSNNRFDGAIPASIANLKGLQ--------------------------------FSGRIPQQLAELTFLAFFN 194 (305)
Q Consensus 147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------------------------------l~g~ip~~l~~l~~L~~L~ 194 (305)
..+|++|+||.|+++ .+|..+..|+.|+ ....+|+.++.|..|+.|.
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc
Confidence 445666666666666 5666555555544 2235778888888888888
Q ss_pred ccCCcceecCCCCC-CCCccCCCccCCCCCCCCcCC
Q 045166 195 VSDNYLTGPIPQGK-QFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 195 Ls~N~l~g~ip~~~-~~~~l~~~~~~gNp~lc~~~~ 229 (305)
|++|++- ..|+.. -+..+..+++..||.+.-+|-
T Consensus 346 L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 346 LDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 8888887 566654 456788888999998876554
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.72 E-value=3.5e-17 Score=155.59 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=92.3
Q ss_pred CCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccc
Q 045166 47 KLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126 (305)
Q Consensus 47 ~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 126 (305)
.++.|+|++|.+.|.+|..+ +.+++|+.|+|++|.++|.+|.. ++.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N~l~g~iP~~-~~~------------------------------- 464 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGNSIRGNIPPS-LGS------------------------------- 464 (623)
T ss_pred EEEEEECCCCCccccCCHHH--hCCCCCCEEECCCCcccCcCChH-HhC-------------------------------
Confidence 37788999999999888888 88999999999999999888864 332
Q ss_pred cccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166 127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 206 (305)
+++|+.|||++|+++|.+|.. ++++++|++|+|++|+++|.+|.
T Consensus 465 --------------------l~~L~~LdLs~N~lsg~iP~~----------------l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 465 --------------------ITSLEVLDLSYNSFNGSIPES----------------LGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred --------------------CCCCCEEECCCCCCCCCCchH----------------HhcCCCCCEEECcCCcccccCCh
Confidence 456777888889888766544 56778899999999999999987
Q ss_pred CC--CCCccCCCccCCCCCCCCcCCCCCCC
Q 045166 207 GK--QFATFDNTSFDGNSGLCGKPLSKGCD 234 (305)
Q Consensus 207 ~~--~~~~l~~~~~~gNp~lc~~~~~~~c~ 234 (305)
.. .+..+...++.+|+.+|+.|....|.
T Consensus 509 ~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 509 ALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred HHhhccccCceEEecCCccccCCCCCCCCc
Confidence 52 22344566789999999977656664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.6e-18 Score=155.19 Aligned_cols=211 Identities=20% Similarity=0.152 Sum_probs=125.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|+|+..--..|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-. ++..+.++++|+.|.|.
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv--e~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV--EGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee--hhhhhcCchhhhhhhhh
Confidence 3567777777765566777777777777777777764444566677777777777777532 23333677777777777
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCc---ccccccccccccEEEcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGR---VMTYNKIPNILAGIILS 156 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~L~~LdLs 156 (305)
.|.++ .+-++.|..+.++++|+++.|+...-.. +.++.+ .+..++++.+.+ ..+.-...++|+.||||
T Consensus 254 rN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~-------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 254 RNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNE-------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hcCcc-cccCcceeeecccceeecccchhhhhhc-------ccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 77777 6776777777777777777654322110 111111 122233333332 22223346789999999
Q ss_pred CCccccccchhhcCCCCce---eeec-----CCccccCCCCCCEEeccCCcceecCCCC----CCCCccCCCccCCC
Q 045166 157 NNRFDGAIPASIANLKGLQ---FSGR-----IPQQLAELTFLAFFNVSDNYLTGPIPQG----KQFATFDNTSFDGN 221 (305)
Q Consensus 157 ~N~l~g~~p~~~~~L~~L~---l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~----~~~~~l~~~~~~gN 221 (305)
+|+++..-+..|.-|..|+ ++.. --..|..+.+|++|||++|.+++.|.+. ..+..+..+.+.||
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 9999955555665444443 3321 1224555667777777777777766553 22444555556665
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-18 Score=149.65 Aligned_cols=226 Identities=18% Similarity=0.161 Sum_probs=148.5
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccc-ccceeeeCCCCCCCCCCCccEEeCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRS-NIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
.++|..|+|+...|.+|..+++|++|||++|+|+.+-|++|.++++|..|-+.+ |+++...-..| .++.+|+.|.+.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F--~gL~slqrLllN 148 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF--GGLSSLQRLLLN 148 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh--hhHHHHHHHhcC
Confidence 578999999988888999999999999999999999999999999988776655 88886333334 666666666666
Q ss_pred CCcccccCChhhhhCcccchhccCccc------------------------ccccccccC-----CCCcCCCccc-----
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSAL------------------------RYLQDVLFP-----YGQVSSNVLG----- 126 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~------------------------~~~~~~~~~-----~~~~~~~~~~----- 126 (305)
-|++. -++.+.|..++++..|.+-.| .+...-..+ ....+.....
T Consensus 149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 66666 555555666666655554432 110000000 0000000000
Q ss_pred ------------------cccccc--cccccCc-----ccccccccccccEEEccCCccccccchhhcCCCCce---eee
Q 045166 127 ------------------TYDYSR--TMNSKGR-----VMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ---FSG 178 (305)
Q Consensus 127 ------------------~~~~~~--~~~~~~~-----~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l~g 178 (305)
.+.... ....... +..-+..+++|+.|+|++|++++.-+.+|..+..++ +.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 000000 0000111 111234589999999999999988888998877776 333
Q ss_pred c-----CCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCCC
Q 045166 179 R-----IPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPLS 230 (305)
Q Consensus 179 ~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~~ 230 (305)
. --..|..+..|++|+|.+|+|+...|.. .....+..+.+-+||+.|+|.+.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 1 2235778899999999999999887764 24455677788999999988543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=4.4e-19 Score=152.34 Aligned_cols=212 Identities=15% Similarity=0.198 Sum_probs=145.1
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
+|++++|+++ .+|++++.+..++.|+.++|+++. +|+.++.+.+|..|+.++|.+.. +|+.+ +.+..+..+|..+
T Consensus 72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~e-l~~~i--~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKE-LPDSI--GRLLDLEDLDATN 146 (565)
T ss_pred EEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceee-cCchH--HHHhhhhhhhccc
Confidence 5788888887 778888888888888888888886 88888888888888888888875 56666 6777888888888
Q ss_pred CcccccCChhhhhCcccchhccCccccccccc---------------ccCCCCcCCCcccc-ccccccccccCc--cccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDV---------------LFPYGQVSSNVLGT-YDYSRTMNSKGR--VMTY 143 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~ 143 (305)
|+++ ++|.+ +..+.++..+++.+|+..... .-..+.+|..+... .+..+.+..+.+ .+++
T Consensus 147 N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef 224 (565)
T KOG0472|consen 147 NQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEF 224 (565)
T ss_pred cccc-cCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCC
Confidence 8888 77866 667777777777664332211 01123344444332 111112222221 1122
Q ss_pred ccccccccEEEccCCccccccchhhc-CCCCce-------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCC
Q 045166 144 NKIPNILAGIILSNNRFDGAIPASIA-NLKGLQ-------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDN 215 (305)
Q Consensus 144 ~~~~~~L~~LdLs~N~l~g~~p~~~~-~L~~L~-------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~ 215 (305)
..+..|+++.++.|+++ .+|.+.. +|.++. -..+.|+++..+.+|++||+|+|.+++..++...+ ++..
T Consensus 225 -~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 225 -PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF 301 (565)
T ss_pred -CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence 22555666666666666 5565554 455544 12368899999999999999999999887776666 8888
Q ss_pred CccCCCCC
Q 045166 216 TSFDGNSG 223 (305)
Q Consensus 216 ~~~~gNp~ 223 (305)
..++|||.
T Consensus 302 L~leGNPl 309 (565)
T KOG0472|consen 302 LALEGNPL 309 (565)
T ss_pred hhhcCCch
Confidence 88999984
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.3e-18 Score=149.46 Aligned_cols=212 Identities=24% Similarity=0.255 Sum_probs=136.7
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
|+|..|++. .+| +|.+|+.|.+|+++.|+|.- +|++.+ +++++.+|||+.|+++. .|..+ +.+++|.+||+|+
T Consensus 211 LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklke-~Pde~--clLrsL~rLDlSN 284 (565)
T KOG0472|consen 211 LYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLKE-VPDEI--CLLRSLERLDLSN 284 (565)
T ss_pred HHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeecccccccc-CchHH--HHhhhhhhhcccC
Confidence 344555554 444 45555555555555555554 666655 78899999999999974 78888 8899999999999
Q ss_pred CcccccCChhhhhCcccchhccCccccc------------------ccc------ccc------CCCCcCCC--------
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRY------------------LQD------VLF------PYGQVSSN-------- 123 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~------------------~~~------~~~------~~~~~~~~-------- 123 (305)
|.++ .+|.. ++++ .|+.|.+.+|.. +.+ ... ..+..+..
T Consensus 285 N~is-~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 285 NDIS-SLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred Cccc-cCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 9999 77866 8888 888888776411 111 000 00000100
Q ss_pred -------------------cccc----cccccccccc--------------------------CcccccccccccccEEE
Q 045166 124 -------------------VLGT----YDYSRTMNSK--------------------------GRVMTYNKIPNILAGII 154 (305)
Q Consensus 124 -------------------~~~~----~~~~~~~~~~--------------------------~~~~~~~~~~~~L~~Ld 154 (305)
.+.. ....++++-+ ++.+.+...+++|+.|+
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence 0000 0000011100 11122233467788888
Q ss_pred ccCCccccccchhhcCCCCce------------------------------eeecCCcc-ccCCCCCCEEeccCCcceec
Q 045166 155 LSNNRFDGAIPASIANLKGLQ------------------------------FSGRIPQQ-LAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 155 Ls~N~l~g~~p~~~~~L~~L~------------------------------l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ 203 (305)
|++|-+. .+|.+++.+..|+ -.+.++.. +.++.+|.+|||.+|.+...
T Consensus 442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I 520 (565)
T KOG0472|consen 442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI 520 (565)
T ss_pred cccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC
Confidence 8888888 8888888777776 12345444 88999999999999999955
Q ss_pred CCCCCCCCccCCCccCCCCCC
Q 045166 204 IPQGKQFATFDNTSFDGNSGL 224 (305)
Q Consensus 204 ip~~~~~~~l~~~~~~gNp~l 224 (305)
.|..+...++..+.+.|||+-
T Consensus 521 Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 521 PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ChhhccccceeEEEecCCccC
Confidence 555577888899999999985
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=2.2e-18 Score=155.53 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=30.3
Q ss_pred cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166 179 RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS 222 (305)
Q Consensus 179 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp 222 (305)
.+|+.+.++++|+.|+||+|+++..--...+...+..+.++.|.
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence 45667777888888888888887544444556666666677773
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=5e-17 Score=152.36 Aligned_cols=215 Identities=21% Similarity=0.256 Sum_probs=148.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+++|+++|+++ .+|++++.+.+|+.+++.+|+++. +|..+...++|+.|.+.+|.+.. +|... .++++|++|||.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~y-ip~~l--e~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELEY-IPPFL--EGLKSLRTLDLQ 318 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhh-CCCcc--cccceeeeeeeh
Confidence 47899999998 677999999999999999999976 89899999999999999999986 55555 678999999999
Q ss_pred CCcccccCChhhhhCccc-chhccCcccccccccccCCCCcCCCcc-------------------cccccccccccc---
Q 045166 81 DNRFTGKLPSNSFLCWNA-MKIVNTSALRYLQDVLFPYGQVSSNVL-------------------GTYDYSRTMNSK--- 137 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~--- 137 (305)
.|++. .+|+..+.-+.. |..++.+.|..-. .+...+..-..+. ...+..++++.+
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 99998 888765554443 5555555432111 0000000000000 011222233333
Q ss_pred CcccccccccccccEEEccCCccccccchhhcCCCCce-------eeecCCccccCCCCCCEEeccCCccee-cCCCCCC
Q 045166 138 GRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ-------FSGRIPQQLAELTFLAFFNVSDNYLTG-PIPQGKQ 209 (305)
Q Consensus 138 ~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~-------l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~ 209 (305)
.++......+..|+.|+||+|+++ .+|..+.++..|+ ..-..| .+..++.|+.+|+|.|+|+- .+|....
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 233444445666777777777777 7777777766665 223466 78999999999999999975 4455444
Q ss_pred CCccCCCccCCCCCC
Q 045166 210 FATFDNTSFDGNSGL 224 (305)
Q Consensus 210 ~~~l~~~~~~gNp~l 224 (305)
.++++.++++||+.+
T Consensus 475 ~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRL 489 (1081)
T ss_pred CcccceeeccCCccc
Confidence 578999999999863
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.4e-17 Score=123.92 Aligned_cols=168 Identities=25% Similarity=0.420 Sum_probs=128.7
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 82 (305)
|-||+|+++ .+|+.++.+.+|+.|++.+|++.. +|..++.+++|+.|+++-|++. ..|..| +.++.|+.|||++|
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~levldltyn 112 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALEVLDLTYN 112 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCcccc--CCCchhhhhhcccc
Confidence 678999999 888899999999999999999987 9999999999999999999997 589999 99999999999999
Q ss_pred ccc-ccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166 83 RFT-GKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD 161 (305)
Q Consensus 83 ~l~-g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~ 161 (305)
++. ..+|.. |-.++.|+.|+++.|.+ ..+|..+. .+++|+.|.+..|.+-
T Consensus 113 nl~e~~lpgn-ff~m~tlralyl~dndf--------e~lp~dvg--------------------~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 113 NLNENSLPGN-FFYMTTLRALYLGDNDF--------EILPPDVG--------------------KLTNLQILSLRDNDLL 163 (264)
T ss_pred ccccccCCcc-hhHHHHHHHHHhcCCCc--------ccCChhhh--------------------hhcceeEEeeccCchh
Confidence 986 357766 66788899998887532 22333222 2677788888888777
Q ss_pred cccchhhcCCCCce---eee----cCCccccCCC---CCCEEeccCCcceecCC
Q 045166 162 GAIPASIANLKGLQ---FSG----RIPQQLAELT---FLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 162 g~~p~~~~~L~~L~---l~g----~ip~~l~~l~---~L~~L~Ls~N~l~g~ip 205 (305)
.+|.+++.|..|+ +.| .+|++++++. +=+.+.+.+|.+-.+|.
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence 7787777766655 333 4666666543 22345566676654443
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=6e-14 Score=142.44 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=56.3
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.|++.+|.+. .+|..| .+.+|+.|++++|++.. +|..+..+++|++|+|+++.....+|. + +.+++|+.|++++
T Consensus 593 ~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--s~l~~Le~L~L~~ 666 (1153)
T PLN03210 593 LLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-L--SMATNLETLKLSD 666 (1153)
T ss_pred EEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-c--ccCCcccEEEecC
Confidence 3444455443 445444 34566666666666654 555555666666666665544344443 3 4556666666666
Q ss_pred CcccccCChhhhhCcccchhccCccccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
|.....+|.. +..+++|+.|++++|..
T Consensus 667 c~~L~~lp~s-i~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 667 CSSLVELPSS-IQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred CCCccccchh-hhccCCCCEEeCCCCCC
Confidence 5444456644 56666666666665433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=2.4e-14 Score=136.95 Aligned_cols=181 Identities=20% Similarity=0.196 Sum_probs=96.1
Q ss_pred CEEEcccCccccccChhhhc-----------------CCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeC
Q 045166 1 MFYLRNENTFLQRIPRSLIN-----------------CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE 63 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~-----------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 63 (305)
++|+|++|+|+ .+|....+ .++|+.|++++|+++. +|. ..++|+.|++++|++++ +|
T Consensus 245 k~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp 318 (788)
T PRK15387 245 RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LP 318 (788)
T ss_pred cEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CC
Confidence 46777777777 34432211 1345556666666654 443 23678888888888875 44
Q ss_pred CCCCCCC-----------------CCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccc
Q 045166 64 EPRTSCG-----------------FSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG 126 (305)
Q Consensus 64 ~~~~~~~-----------------l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 126 (305)
... .. ..+|++|++++|+|+ .+|.. ..+|+.|++++|.... .+ ..+..
T Consensus 319 ~lp--~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP----~l~~~--- 383 (788)
T PRK15387 319 ALP--SELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LP----ALPSG--- 383 (788)
T ss_pred CCc--ccccccccccCccccccccccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cc----ccccc---
Confidence 321 11 013455555555555 34421 1234444444432111 00 01111
Q ss_pred cccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceee----ecCCccccCCCCCCEEeccCCccee
Q 045166 127 TYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFS----GRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
+..+++..+.+. .+....++|+.||+++|+|+ .+|....+|..|.++ ..+|..+.++++|+.|+|++|+|+|
T Consensus 384 --L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~Ls-sIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 384 --LKELIVSGNRLT-SLPVLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred --cceEEecCCccc-CCCCcccCCCEEEccCCcCC-CCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 122222333222 12223456778888888887 567655555555432 2578778888888888888888887
Q ss_pred cCCC
Q 045166 203 PIPQ 206 (305)
Q Consensus 203 ~ip~ 206 (305)
.+|.
T Consensus 460 ~~~~ 463 (788)
T PRK15387 460 RTLQ 463 (788)
T ss_pred hHHH
Confidence 7664
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=4.4e-14 Score=135.64 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=63.2
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.|+|++|+++ .+|..+. ++|++|++++|+++. +|..+. .+|+.|+|++|.+. .+|..+ . .+|+.|+++
T Consensus 202 ~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l--~--s~L~~L~Ls 270 (754)
T PRK15370 202 TTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERL--P--SALQSLDLF 270 (754)
T ss_pred cEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhH--h--CCCCEEECc
Confidence 36888889888 5666554 578888888888875 676543 46777777777776 456544 2 467777777
Q ss_pred CCcccccCChhhhhCcccchhccCcccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALR 108 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~ 108 (305)
+|+++ .+|.. +. ++|+.|++++|+
T Consensus 271 ~N~L~-~LP~~-l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 271 HNKIS-CLPEN-LP--EELRYLSVYDNS 294 (754)
T ss_pred CCccC-ccccc-cC--CCCcEEECCCCc
Confidence 77777 56654 21 466777776653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=5.6e-14 Score=134.95 Aligned_cols=92 Identities=21% Similarity=0.239 Sum_probs=57.3
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.|+++++.++ .+|..+. ++|+.|+|++|.++. +|..+. ++|++|++++|+++. +|..+ ..+|+.|++++
T Consensus 182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l----~~~L~~L~Ls~ 250 (754)
T PRK15370 182 ELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL----PDTIQEMELSI 250 (754)
T ss_pred EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh----hccccEEECcC
Confidence 4667777766 4555442 467777777777775 565543 467777777777763 45443 23577777777
Q ss_pred CcccccCChhhhhCcccchhccCcccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALR 108 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~ 108 (305)
|++. .+|.. +. .+|+.|++++|+
T Consensus 251 N~L~-~LP~~-l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 251 NRIT-ELPER-LP--SALQSLDLFHNK 273 (754)
T ss_pred CccC-cCChh-Hh--CCCCEEECcCCc
Confidence 7776 66654 22 356667776643
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=9.6e-14 Score=132.87 Aligned_cols=193 Identities=21% Similarity=0.255 Sum_probs=115.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEE--------------------ccccccee
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLI--------------------LRSNIFYG 60 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~--------------------L~~N~l~~ 60 (305)
+.|++++|+++ .+|. .+++|++|++++|+++. +|... ++|+.|+ +++|+++.
T Consensus 225 ~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~lp---~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~ 296 (788)
T PRK15387 225 TTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVLP---PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 296 (788)
T ss_pred CEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCcc---cccceeeccCCchhhhhhchhhcCEEECcCCcccc
Confidence 36899999999 5775 36899999999999986 66432 3444554 44444442
Q ss_pred eeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc-----------------ccchhccCcccccccccccCCCCcCCC
Q 045166 61 IIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW-----------------NAMKIVNTSALRYLQDVLFPYGQVSSN 123 (305)
Q Consensus 61 ~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l-----------------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 123 (305)
+|. ..++|+.|++++|+++ .+|.. ...+ .+|+.|++++|++.. . ..++.+
T Consensus 297 -LP~-----~p~~L~~LdLS~N~L~-~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-L----P~lp~~ 363 (788)
T PRK15387 297 -LPV-----LPPGLQELSVSDNQLA-SLPAL-PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-L----PTLPSE 363 (788)
T ss_pred -ccc-----cccccceeECCCCccc-cCCCC-cccccccccccCccccccccccccceEecCCCccCC-C----CCCCcc
Confidence 232 2367999999999998 56641 1111 134444444432221 0 011111
Q ss_pred ccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee----cCCccccCCCCCCEEeccCCc
Q 045166 124 VLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNY 199 (305)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~ 199 (305)
+.. +.+..+.+. .+...+.+|+.|++++|+|+ .+|....+|..|.+++ .+|.. ..+|+.|++++|+
T Consensus 364 L~~-----L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 364 LYK-----LWAYNNRLT-SLPALPSGLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred cce-----ehhhccccc-cCcccccccceEEecCCccc-CCCCcccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc
Confidence 111 112222221 12223456888888888888 5776666666666444 34542 2457788899999
Q ss_pred ceecCCCC-CCCCccCCCccCCCCCCC
Q 045166 200 LTGPIPQG-KQFATFDNTSFDGNSGLC 225 (305)
Q Consensus 200 l~g~ip~~-~~~~~l~~~~~~gNp~lc 225 (305)
|+ .+|.. ..+..+..+++++|+.-.
T Consensus 434 Lt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 434 LT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cc-ccChHHhhccCCCeEECCCCCCCc
Confidence 88 56754 456677788899998643
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=7.7e-13 Score=134.45 Aligned_cols=63 Identities=24% Similarity=0.125 Sum_probs=36.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE 64 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 64 (305)
++|+|+++...+.+|. ++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|.
T Consensus 637 k~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 3566666554445553 56666666666666654445666666666666666666543334444
No 20
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=1.3e-13 Score=131.32 Aligned_cols=103 Identities=25% Similarity=0.325 Sum_probs=90.0
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+ +.+++|++|+|++
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l--~~L~~L~~L~Ls~ 499 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL--GQLTSLRILNLNG 499 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH--hcCCCCCEEECcC
Confidence 58999999999999999999999999999999999999999999999999999999999999988 8999999999999
Q ss_pred CcccccCChhhhhC-cccchhccCccc
Q 045166 82 NRFTGKLPSNSFLC-WNAMKIVNTSAL 107 (305)
Q Consensus 82 N~l~g~lp~~~~~~-l~~L~~L~l~~~ 107 (305)
|+++|.+|.. +.. ..++..+++.+|
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCC
Confidence 9999999976 443 234455555543
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=6.3e-14 Score=125.67 Aligned_cols=165 Identities=19% Similarity=0.208 Sum_probs=85.9
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 82 (305)
.||+.|++. ++|..++.+..|+.+.|.+|.+.- +|..++++..|++|||+.|+++ .+|..+ |.|+ |+.|-+++|
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~l--C~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGL--CDLP-LKVLIVSNN 153 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhh--hcCc-ceeEEEecC
Confidence 466666665 566655555555555555555543 5555555555555555555554 244444 4444 555555555
Q ss_pred cccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccc-ccccccc---ccCcccccccccccccEEEccCC
Q 045166 83 RFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTY-DYSRTMN---SKGRVMTYNKIPNILAGIILSNN 158 (305)
Q Consensus 83 ~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~L~~LdLs~N 158 (305)
+++ .+|.+ ++.+..|..|+.+.|+... +|+.+..+. +..+.+. ...++.+.. .-.|..||+|+|
T Consensus 154 kl~-~lp~~-ig~~~tl~~ld~s~nei~s--------lpsql~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScN 221 (722)
T KOG0532|consen 154 KLT-SLPEE-IGLLPTLAHLDVSKNEIQS--------LPSQLGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCN 221 (722)
T ss_pred ccc-cCCcc-cccchhHHHhhhhhhhhhh--------chHHhhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccC
Confidence 555 55554 4455555555555432221 111111100 0000000 001111111 123778888888
Q ss_pred ccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 159 RFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 159 ~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
+++ .||-.|.+|..|++|-|.+|.|+.
T Consensus 222 kis-----------------~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 222 KIS-----------------YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred cee-----------------ecchhhhhhhhheeeeeccCCCCC
Confidence 888 455666777888888888888874
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=2.7e-14 Score=128.05 Aligned_cols=183 Identities=22% Similarity=0.344 Sum_probs=140.0
Q ss_pred EEcccCccccccChhh--hcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 3 YLRNENTFLQRIPRSL--INCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
|.|++-++. .+|..= -.++--...||+.|++.. +|..++.+..|+.+.|..|.+. .+|..+ +.+..|.+||++
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i--~~L~~lt~l~ls 129 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAI--CNLEALTFLDLS 129 (722)
T ss_pred cccccchhh-cCCCccccccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhh--hhhhHHHHhhhc
Confidence 556666666 444321 345556778999999987 9999999999999999999996 588888 999999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
.|+++ .+|.. +. .--|+.|.+++|+... . |. .+ +.+..|..||.|.|.+
T Consensus 130 ~NqlS-~lp~~-lC-~lpLkvli~sNNkl~~-l-------p~-------------------~i-g~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 130 SNQLS-HLPDG-LC-DLPLKVLIVSNNKLTS-L-------PE-------------------EI-GLLPTLAHLDVSKNEI 178 (722)
T ss_pred cchhh-cCChh-hh-cCcceeEEEecCcccc-C-------Cc-------------------cc-ccchhHHHhhhhhhhh
Confidence 99999 89976 33 3457777777754322 1 11 11 1367788999999999
Q ss_pred ccccchhhcCCCCce-------eeecCCccccCCCCCCEEeccCCcceecCCC-CCCCCccCCCccCCCCCC
Q 045166 161 DGAIPASIANLKGLQ-------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGL 224 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~-------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~~~l~~~~~~gNp~l 224 (305)
. .+|..++.+.+|. -.-.+|+++..|+ |..||+|+|+++ .||. ...+..+..+.++.||..
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 9 8999999888887 1225788888665 999999999999 5664 356777888889999854
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=2.3e-13 Score=119.73 Aligned_cols=105 Identities=19% Similarity=0.115 Sum_probs=67.1
Q ss_pred EEEcccCccc------cccChhhhcCCCCCEEeccCcccccCcchhhcCCCC---CCEEEccccccee----eeCCCCCC
Q 045166 2 FYLRNENTFL------QRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPK---LNVLILRSNIFYG----IIEEPRTS 68 (305)
Q Consensus 2 ~L~Ls~N~l~------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~----~~p~~~~~ 68 (305)
+|+++++.+. ..++..+..+++|+.|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+
T Consensus 55 ~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-- 132 (319)
T cd00116 55 ELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-- 132 (319)
T ss_pred EEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH--
Confidence 5677777665 234456677788888888888887655555555544 8888888887762 111222
Q ss_pred CCC-CCccEEeCCCCcccccCCh---hhhhCcccchhccCcccc
Q 045166 69 CGF-SKLRIIDLSDNRFTGKLPS---NSFLCWNAMKIVNTSALR 108 (305)
Q Consensus 69 ~~l-~~L~~L~Ls~N~l~g~lp~---~~~~~l~~L~~L~l~~~~ 108 (305)
..+ ++|+.|++++|.+++.... ..+..+..|++|++++|.
T Consensus 133 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 344 6788888888887743221 124555677888877753
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=6.6e-13 Score=114.43 Aligned_cols=98 Identities=24% Similarity=0.239 Sum_probs=79.4
Q ss_pred EcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC-CCC
Q 045166 4 LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL-SDN 82 (305)
Q Consensus 4 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L-s~N 82 (305)
|-++-.++ ++|..+- ..-..++|..|+|+...|.+|+.+++|+.||||+|.++.+-|..| .++++|..|-+ ++|
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF--~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF--KGLASLLSLVLYGNN 126 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh--hhhHhhhHHHhhcCC
Confidence 33444455 5565432 345789999999999777789999999999999999999999988 89998766655 459
Q ss_pred cccccCChhhhhCcccchhccCccc
Q 045166 83 RFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 83 ~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
+|+ .+|.+.|+++.+++.|.+.-|
T Consensus 127 kI~-~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 127 KIT-DLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred chh-hhhhhHhhhHHHHHHHhcChh
Confidence 999 999999999999999887654
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=2e-13 Score=128.62 Aligned_cols=213 Identities=18% Similarity=0.179 Sum_probs=149.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.||+++|++. ..|..+..+.+|+.|+++.|.|.. +|.+...+.+|++|.|..|.+. ..|..+ ..+.+|++||+|
T Consensus 48 ~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~--~~lknl~~LdlS 122 (1081)
T KOG0618|consen 48 KSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASI--SELKNLQYLDLS 122 (1081)
T ss_pred EEeeccccccc-cCCchhhhHHHHhhcccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhH--Hhhhcccccccc
Confidence 46999999987 899999999999999999999986 8999999999999999999997 488888 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccC------------CCCcCCCccccccccccccccCcc--------
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP------------YGQVSSNVLGTYDYSRTMNSKGRV-------- 140 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-------- 140 (305)
+|++. .+|. ++..+..+..+++++|..+....-. .+.++..+..+ ....++..+...
T Consensus 123 ~N~f~-~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l-~~~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 123 FNHFG-PIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL-THQLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred hhccC-CCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh-heeeecccchhhhhhhhhcc
Confidence 99998 8995 4778888888888876222111000 00000000000 001111111100
Q ss_pred --------------------------c--------ccccccccccEEEccCCccccccchhhcCCCCce-------eeec
Q 045166 141 --------------------------M--------TYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ-------FSGR 179 (305)
Q Consensus 141 --------------------------~--------~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~-------l~g~ 179 (305)
. .......+|+++|+|.|+++ .+|++++.+.+|+ ..-.
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~ 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh
Confidence 0 00011456788888888888 7778888877777 1135
Q ss_pred CCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166 180 IPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS 222 (305)
Q Consensus 180 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp 222 (305)
+|..+...++|+.|++.+|.+.-..|...++..+..+++..|.
T Consensus 279 lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 6777777888888888888888555555567777777776663
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=8.8e-12 Score=113.14 Aligned_cols=99 Identities=27% Similarity=0.298 Sum_probs=55.8
Q ss_pred EEEcccCccccccChhhhcCC-CCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 2 FYLRNENTFLQRIPRSLINCS-KLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
.|++.+|.++ .+|.....+. +|+.|++++|++.. +|..+..+++|+.|++++|++.. +|... +..++|+.|+++
T Consensus 120 ~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~-l~~~~--~~~~~L~~L~ls 194 (394)
T COG4886 120 SLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSD-LPKLL--SNLSNLNNLDLS 194 (394)
T ss_pred EEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhh-hhhhh--hhhhhhhheecc
Confidence 3556666665 4555555553 66666666666654 54555666666666666666653 33332 245566666666
Q ss_pred CCcccccCChhhhhCcccchhccCccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
+|+++ .+|.. ......|+++.+++|
T Consensus 195 ~N~i~-~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 195 GNKIS-DLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred CCccc-cCchh-hhhhhhhhhhhhcCC
Confidence 66666 56643 234444666665554
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=7.1e-12 Score=110.25 Aligned_cols=107 Identities=17% Similarity=0.046 Sum_probs=79.5
Q ss_pred CEEEcccCcccc----ccChhhhcCCCCCEEeccCccccc------CcchhhcCCCCCCEEEcccccceeeeCCCCCCCC
Q 045166 1 MFYLRNENTFLQ----RIPRSLINCSKLEFLGLGINQISD------TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCG 70 (305)
Q Consensus 1 ~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 70 (305)
++|+++++.++. .++..+...++|+.|+++++.+.+ .++..+..+++|+.|++++|.+.+..+..+ ..
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~ 103 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL--ES 103 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH--HH
Confidence 468999999853 366677788899999999998873 244567788999999999999976554444 33
Q ss_pred CC---CccEEeCCCCcccc----cCChhhhhCc-ccchhccCcccccc
Q 045166 71 FS---KLRIIDLSDNRFTG----KLPSNSFLCW-NAMKIVNTSALRYL 110 (305)
Q Consensus 71 l~---~L~~L~Ls~N~l~g----~lp~~~~~~l-~~L~~L~l~~~~~~ 110 (305)
+. +|++|++++|++++ .+.. .+..+ ++|+.|++++|...
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCC
Confidence 44 49999999999973 1222 24556 88999999986543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=7.5e-11 Score=93.61 Aligned_cols=95 Identities=32% Similarity=0.318 Sum_probs=27.4
Q ss_pred cccCccccccChhhhcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCc
Q 045166 5 RNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNR 83 (305)
Q Consensus 5 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~ 83 (305)
|..+.+. ..| .+.+..++++|+|++|.|+. + +.++ .+.+|+.|+|++|.++. ++ .+ ..++.|+.|++++|+
T Consensus 4 lt~~~i~-~~~-~~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l--~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 4 LTANMIE-QIA-QYNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GL--PGLPRLKTLDLSNNR 75 (175)
T ss_dssp ------------------------------------S--TT-TT--EEE-TTS--S---T-T------TT--EEE--SS-
T ss_pred ccccccc-ccc-cccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-Cc--cChhhhhhcccCCCC
Confidence 3444444 333 35566788999999999986 4 3566 58899999999999986 33 45 678999999999999
Q ss_pred ccccCChhhhhCcccchhccCcccc
Q 045166 84 FTGKLPSNSFLCWNAMKIVNTSALR 108 (305)
Q Consensus 84 l~g~lp~~~~~~l~~L~~L~l~~~~ 108 (305)
++ .++..+...+++|+.|++++|+
T Consensus 76 I~-~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 76 IS-SISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp ---S-CHHHHHH-TT--EEE-TTS-
T ss_pred CC-ccccchHHhCCcCCEEECcCCc
Confidence 99 7765533467788888877754
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.10 E-value=1.1e-10 Score=76.39 Aligned_cols=61 Identities=31% Similarity=0.468 Sum_probs=46.7
Q ss_pred CCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcc
Q 045166 22 SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRF 84 (305)
Q Consensus 22 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l 84 (305)
++|++|++++|+++...+..|..+++|++|++++|.++...|..| .++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f--~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAF--SNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTT--TTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHH--cCCCCCCEEeCcCCcC
Confidence 467788888888877444577778888888888888877766677 7788888888888765
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=2.8e-11 Score=96.08 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=39.7
Q ss_pred CEEEcccCccccccChhhh-cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
+.|+|++|.|+ .+ +.++ .+.+|+.||+++|.|+. ++ .+..+++|++|++++|+++. +.+.+. ..+++|+.|++
T Consensus 22 ~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~-~~lp~L~~L~L 95 (175)
T PF14580_consen 22 RELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLD-KNLPNLQELYL 95 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHH-HH-TT--EEE-
T ss_pred ccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchH-HhCCcCCEEEC
Confidence 46999999998 44 3565 58999999999999987 54 57889999999999999986 332220 25799999999
Q ss_pred CCCcccccCCh-hhhhCcccchhccCccccc
Q 045166 80 SDNRFTGKLPS-NSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 80 s~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~ 109 (305)
++|++. .+.. ..+..+++|+.|++.+|..
T Consensus 96 ~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKIS-DLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCC-ChHHhHHHHcCCCcceeeccCCcc
Confidence 999998 4432 3367788999999888644
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=1.6e-11 Score=102.66 Aligned_cols=135 Identities=21% Similarity=0.248 Sum_probs=94.9
Q ss_pred hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166 18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN 97 (305)
Q Consensus 18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~ 97 (305)
+.....|+++||++|.|+. +.++..-++.++.|++|+|.+... . .+ ..+++|+.||||+|.++ ++- ++-..+.
T Consensus 280 ~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v-~-nL--a~L~~L~~LDLS~N~Ls-~~~-Gwh~KLG 352 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV-Q-NL--AELPQLQLLDLSGNLLA-ECV-GWHLKLG 352 (490)
T ss_pred cchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeee-h-hh--hhcccceEeecccchhH-hhh-hhHhhhc
Confidence 3445678889999999886 777777888999999999988753 2 35 67889999999999888 555 4456677
Q ss_pred cchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceee
Q 045166 98 AMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFS 177 (305)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~ 177 (305)
++++|.++.|..-+ . +-...+-+|+.||+++|++. .+..
T Consensus 353 NIKtL~La~N~iE~-L----------------------------SGL~KLYSLvnLDl~~N~Ie-~lde----------- 391 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET-L----------------------------SGLRKLYSLVNLDLSSNQIE-ELDE----------- 391 (490)
T ss_pred CEeeeehhhhhHhh-h----------------------------hhhHhhhhheeccccccchh-hHHH-----------
Confidence 78888877742211 0 00112556888888888876 2211
Q ss_pred ecCCccccCCCCCCEEeccCCcceec
Q 045166 178 GRIPQQLAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 178 g~ip~~l~~l~~L~~L~Ls~N~l~g~ 203 (305)
-..++++|-|+++.|.+|.+.+.
T Consensus 392 ---V~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 392 ---VNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ---hcccccccHHHHHhhcCCCcccc
Confidence 13467788888888888888743
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=1.5e-10 Score=105.07 Aligned_cols=154 Identities=27% Similarity=0.260 Sum_probs=120.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.|++++|++. .+|..+..+++|+.|++++|+++. +|...+.+++|+.|++++|++.. +|... .....|+.++++
T Consensus 143 ~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~--~~~~~L~~l~~~ 217 (394)
T COG4886 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEI--ELLSALEELDLS 217 (394)
T ss_pred ccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCcccc-Cchhh--hhhhhhhhhhhc
Confidence 36899999998 777889999999999999999997 77777789999999999999985 66654 345669999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|++. ..+.. +.++..+..+.+.+|..... ......++.++.|++++|.+
T Consensus 218 ~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~~----------------------------~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 218 NNSII-ELLSS-LSNLKNLSGLELSNNKLEDL----------------------------PESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred CCcce-ecchh-hhhcccccccccCCceeeec----------------------------cchhccccccceeccccccc
Confidence 99655 45544 77888888887666433210 12223367799999999999
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 207 (305)
+ .+ +. ++.+.+++.|++++|.++...|..
T Consensus 268 ~-~i----------------~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 268 S-SI----------------SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred c-cc----------------cc-ccccCccCEEeccCccccccchhh
Confidence 8 33 33 678889999999999998776654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.4e-10 Score=101.38 Aligned_cols=176 Identities=20% Similarity=0.194 Sum_probs=114.6
Q ss_pred hhhcCCCCCEEeccCcccccC--cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166 17 SLINCSKLEFLGLGINQISDT--FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL 94 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~ 94 (305)
....|++++.|||++|-+..- +-.....+++|+.|+|+.|++.....+... ..++.|+.|.|+.+.++..--..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-LLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-hhhhhhheEEeccCCCCHHHHHHHHH
Confidence 456788999999999988752 223345789999999999998754433322 35678899999999888554445567
Q ss_pred CcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccc--hhhcCCC
Q 045166 95 CWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIP--ASIANLK 172 (305)
Q Consensus 95 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p--~~~~~L~ 172 (305)
.+++|..|++..|+..... .....++..|+.|||++|++. ..+ ...+.++
T Consensus 220 ~fPsl~~L~L~~N~~~~~~---------------------------~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIK---------------------------ATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP 271 (505)
T ss_pred hCCcHHHhhhhccccccee---------------------------cchhhhhhHHhhccccCCccc-cccccccccccc
Confidence 7889999988876322111 111233677999999999887 444 3445555
Q ss_pred Cce---e--ee----cCCcc-----ccCCCCCCEEeccCCcceecCCCCCC---CCccCCCccCCCC
Q 045166 173 GLQ---F--SG----RIPQQ-----LAELTFLAFFNVSDNYLTGPIPQGKQ---FATFDNTSFDGNS 222 (305)
Q Consensus 173 ~L~---l--~g----~ip~~-----l~~l~~L~~L~Ls~N~l~g~ip~~~~---~~~l~~~~~~gNp 222 (305)
.|+ + +| .+|+. ...+++|++|+++.|++. .++...+ ..++..+.+.+|+
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccc
Confidence 554 1 11 23333 456789999999999996 4444332 2333444444554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=3.5e-10 Score=74.04 Aligned_cols=58 Identities=28% Similarity=0.301 Sum_probs=53.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccc
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIF 58 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 58 (305)
++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999977678999999999999999999987777999999999999999975
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=7e-10 Score=93.00 Aligned_cols=126 Identities=19% Similarity=0.158 Sum_probs=100.6
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.||||+|.|+ .+.+++.-++.++.|++++|.+.. + +.+..+++|+.||||+|.++. +..+- .++.+++.|.|+.
T Consensus 288 elDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh--~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 288 ELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAE-CVGWH--LKLGNIKTLKLAQ 361 (490)
T ss_pred hccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHh-hhhhH--hhhcCEeeeehhh
Confidence 5899999998 888888889999999999999985 3 358899999999999999985 44444 6788999999999
Q ss_pred CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD 161 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~ 161 (305)
|.+. .+. + ++.+-+|..|++++|+.-.... ...++.++.|+.+.|.+|.+.
T Consensus 362 N~iE-~LS-G-L~KLYSLvnLDl~~N~Ie~lde--------------------------V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NKIE-TLS-G-LRKLYSLVNLDLSSNQIEELDE--------------------------VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHh-hhh-h-hHhhhhheeccccccchhhHHH--------------------------hcccccccHHHHHhhcCCCcc
Confidence 9998 665 4 7888999999998864322110 011233778999999999998
Q ss_pred c
Q 045166 162 G 162 (305)
Q Consensus 162 g 162 (305)
+
T Consensus 413 ~ 413 (490)
T KOG1259|consen 413 G 413 (490)
T ss_pred c
Confidence 4
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=8.4e-09 Score=90.52 Aligned_cols=179 Identities=18% Similarity=0.086 Sum_probs=110.3
Q ss_pred CEEEcccCccccc--cChhhhcCCCCCEEeccCcccccCcchhh-cCCCCCCEEEcccccceeeeCCCCCCCCCCCccEE
Q 045166 1 MFYLRNENTFLQR--IPRSLINCSKLEFLGLGINQISDTFPSWL-GTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L 77 (305)
+.||||.|-|... +-.....+++|+.|+|+.|.+.-...... ..++.|+.|.|+.|.++..--.... ..+|+|+.|
T Consensus 149 ~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~-~~fPsl~~L 227 (505)
T KOG3207|consen 149 RDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL-LTFPSLEVL 227 (505)
T ss_pred eeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHH-HhCCcHHHh
Confidence 4689999998843 33445679999999999999875332222 2578899999999988742211111 467899999
Q ss_pred eCCCCcccccCChhhhhCcccchhccCcccccccccccCC-CCcCCCccccccccccccccCccc---------cccccc
Q 045166 78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPY-GQVSSNVLGTYDYSRTMNSKGRVM---------TYNKIP 147 (305)
Q Consensus 78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 147 (305)
+|..|...+.-. .....+..|+.|++++|+.+....++. +.+|. +..+.++.+++.. .....+
T Consensus 228 ~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~------L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 228 YLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG------LNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred hhhcccccceec-chhhhhhHHhhccccCCcccccccccccccccc------hhhhhccccCcchhcCCCccchhhhccc
Confidence 999885332222 225567789999999987766543222 22211 1122222233221 112347
Q ss_pred ccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 148 NILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 148 ~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
++|++|+++.|++. ..+. + ..+..+++|+.|....|.|+.
T Consensus 301 ~kL~~L~i~~N~I~-~w~s-l-------------~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 301 PKLEYLNISENNIR-DWRS-L-------------NHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccceeeecccCccc-cccc-c-------------chhhccchhhhhhcccccccc
Confidence 78999999999886 3221 1 223445667777777777763
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=3.4e-08 Score=90.20 Aligned_cols=82 Identities=24% Similarity=0.266 Sum_probs=42.5
Q ss_pred hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166 18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN 97 (305)
Q Consensus 18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~ 97 (305)
+..+++|+.|++..|+|.+ +...+..+++|++|++++|.++... .+ ..++.|+.|++++|.++ .+.. +..++
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l--~~l~~L~~L~l~~N~i~-~~~~--~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GL--STLTLLKELNLSGNLIS-DISG--LESLK 162 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--ch--hhccchhhheeccCcch-hccC--Cccch
Confidence 4555555556666665554 3222445555566666666555433 22 34445555555555555 4442 44455
Q ss_pred cchhccCccc
Q 045166 98 AMKIVNTSAL 107 (305)
Q Consensus 98 ~L~~L~l~~~ 107 (305)
.|+.+++++|
T Consensus 163 ~L~~l~l~~n 172 (414)
T KOG0531|consen 163 SLKLLDLSYN 172 (414)
T ss_pred hhhcccCCcc
Confidence 5555555553
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=2.9e-08 Score=90.64 Aligned_cols=82 Identities=28% Similarity=0.275 Sum_probs=49.7
Q ss_pred cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccc
Q 045166 20 NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAM 99 (305)
Q Consensus 20 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L 99 (305)
.+..++.+++..|.+.. +-..+..+++|+.|++..|++.... ..+ ..+++|++||+++|.|+ .+.. +..+..|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l--~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLL--SSLVNLQVLDLSFNKIT-KLEG--LSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cch--hhhhcchheeccccccc-cccc--hhhccch
Confidence 45556666667776654 2233556677777777777776533 213 45677777777777776 4442 5556667
Q ss_pred hhccCcccc
Q 045166 100 KIVNTSALR 108 (305)
Q Consensus 100 ~~L~l~~~~ 108 (305)
+.|++++|.
T Consensus 143 ~~L~l~~N~ 151 (414)
T KOG0531|consen 143 KELNLSGNL 151 (414)
T ss_pred hhheeccCc
Confidence 777766643
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=9.7e-09 Score=95.38 Aligned_cols=97 Identities=24% Similarity=0.233 Sum_probs=78.8
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
+.++++|.+. .+..++.-++.|+.|||++|+++. +. .+..+++|++|||++|.+.. +|. ++..++. |+.|.+.+
T Consensus 168 ~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~-vp~-l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 168 TASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRH-VPQ-LSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhcc-ccc-cchhhhh-heeeeecc
Confidence 3567889988 778888889999999999999986 33 78899999999999999975 443 2224444 99999999
Q ss_pred CcccccCChhhhhCcccchhccCccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
|.++ ++- + +.++.+|+.||++.|
T Consensus 242 N~l~-tL~-g-ie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 242 NALT-TLR-G-IENLKSLYGLDLSYN 264 (1096)
T ss_pred cHHH-hhh-h-HHhhhhhhccchhHh
Confidence 9998 665 4 788999999999885
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=5e-07 Score=54.49 Aligned_cols=38 Identities=42% Similarity=0.538 Sum_probs=24.3
Q ss_pred CCCCEEeccCcccccCcchhhcCCCCCCEEEccccccee
Q 045166 22 SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60 (305)
Q Consensus 22 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 60 (305)
++|++|++++|+|+. +|+.+++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 356777777777765 66666777777777777776653
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=1.2e-07 Score=88.32 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=79.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchh-hcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSW-LGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|||++|+++. .. .+..|++|+.|||++|.+.. +|.. ..++. |+.|.+++|.++... .+ .++.+|+.||+
T Consensus 190 e~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~tL~--gi--e~LksL~~LDl 261 (1096)
T KOG1859|consen 190 ESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALTTLR--GI--ENLKSLYGLDL 261 (1096)
T ss_pred hhhccchhhhhh-hH-HHHhcccccccccccchhcc-ccccchhhhh-heeeeecccHHHhhh--hH--Hhhhhhhccch
Confidence 469999999984 33 88999999999999999986 7753 22444 999999999998644 44 78999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCccc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
++|-+.+.---..++.+..|+.|.+.+|
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 9999985433344677888999999886
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.2e-06 Score=51.65 Aligned_cols=35 Identities=34% Similarity=0.327 Sum_probs=31.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCccccc
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISD 36 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 36 (305)
++|++++|+|+ .+|+.+++|++|++|++++|+++.
T Consensus 4 ~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 4 EELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred eEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 58999999999 678889999999999999999986
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.14 E-value=3.1e-06 Score=83.48 Aligned_cols=80 Identities=28% Similarity=0.318 Sum_probs=45.8
Q ss_pred CCCEEeccCcc--cccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccch
Q 045166 23 KLEFLGLGINQ--ISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMK 100 (305)
Q Consensus 23 ~L~~L~L~~N~--l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~ 100 (305)
.|++|-+..|. +....++.|..++.|++|||++|.=-+.+|..+ +++-+|++|++++..+. .+|.+ ++++..|.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I--~~Li~LryL~L~~t~I~-~LP~~-l~~Lk~L~ 621 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI--GELVHLRYLDLSDTGIS-HLPSG-LGNLKKLI 621 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH--hhhhhhhcccccCCCcc-ccchH-HHHHHhhh
Confidence 56666666654 333222334556666666666655555566655 55666666666666666 56655 66666666
Q ss_pred hccCcc
Q 045166 101 IVNTSA 106 (305)
Q Consensus 101 ~L~l~~ 106 (305)
+|++..
T Consensus 622 ~Lnl~~ 627 (889)
T KOG4658|consen 622 YLNLEV 627 (889)
T ss_pred eecccc
Confidence 666554
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=2.9e-07 Score=68.78 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=74.8
Q ss_pred EEEcccCccccccChhh---hcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEE
Q 045166 2 FYLRNENTFLQRIPRSL---INCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L 77 (305)
.+||+.+++- -+++.. .....|+..+|++|.+.. +|+.|. ..+.+++|+|++|.+.. +|..+ ..++.|+.|
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd-vPeE~--Aam~aLr~l 105 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD-VPEEL--AAMPALRSL 105 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh-chHHH--hhhHHhhhc
Confidence 3677777765 455544 445667777999999987 777776 45688999999999974 78777 889999999
Q ss_pred eCCCCcccccCChhhhhCcccchhccCccc
Q 045166 78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
++++|.+. ..|.- +..+.++-.|+..+|
T Consensus 106 Nl~~N~l~-~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred ccccCccc-cchHH-HHHHHhHHHhcCCCC
Confidence 99999998 77865 555777777776654
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=3e-07 Score=68.71 Aligned_cols=86 Identities=26% Similarity=0.347 Sum_probs=74.0
Q ss_pred EEEcccCccccccChhhh-cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 2 FYLRNENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
..+|++|.+. .+|+.|. ..+.++.|++++|+|+. +|..+..++.|+.|+++.|.+.. .|..+ ..+.++-+||..
T Consensus 57 ~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~-~p~vi--~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 57 KISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNA-EPRVI--APLIKLDMLDSP 131 (177)
T ss_pred EEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCcccc-chHHH--HHHHhHHHhcCC
Confidence 3689999998 6676665 46789999999999998 99999999999999999999975 67777 568999999999
Q ss_pred CCcccccCChhhh
Q 045166 81 DNRFTGKLPSNSF 93 (305)
Q Consensus 81 ~N~l~g~lp~~~~ 93 (305)
+|.+. ++|-+.|
T Consensus 132 ~na~~-eid~dl~ 143 (177)
T KOG4579|consen 132 ENARA-EIDVDLF 143 (177)
T ss_pred CCccc-cCcHHHh
Confidence 99998 8887643
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.94 E-value=6.9e-07 Score=76.61 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=61.6
Q ss_pred CEEEcccCccccccChh----hhcCCCCCEEeccCcccccCcc-------------hhhcCCCCCCEEEcccccceeee-
Q 045166 1 MFYLRNENTFLQRIPRS----LINCSKLEFLGLGINQISDTFP-------------SWLGTLPKLNVLILRSNIFYGII- 62 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~~L~~L~L~~N~l~~~~- 62 (305)
++||||.|.|...-+.. +..++.|+.|.|.+|.+...-- .....-+.|++++.++|++...-
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence 36788888876544443 3457778888888877652111 11233466778887777764211
Q ss_pred ---CCCCCCCCCCCccEEeCCCCccccc---CChhhhhCcccchhccCcccc
Q 045166 63 ---EEPRTSCGFSKLRIIDLSDNRFTGK---LPSNSFLCWNAMKIVNTSALR 108 (305)
Q Consensus 63 ---p~~~~~~~l~~L~~L~Ls~N~l~g~---lp~~~~~~l~~L~~L~l~~~~ 108 (305)
...+ ...+.|+.+.++.|.|.-. +-...+..++.|++|++..|.
T Consensus 175 ~~~A~~~--~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 175 TALAEAF--QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred HHHHHHH--HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch
Confidence 0112 3446677777777766411 111236677788888887753
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=5.3e-06 Score=69.99 Aligned_cols=88 Identities=22% Similarity=0.203 Sum_probs=66.3
Q ss_pred cCCCCCEEeccCccccc--CcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166 20 NCSKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN 97 (305)
Q Consensus 20 ~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~ 97 (305)
.++.++.|||..|+|+. .+-..+.++|.|++|+|+.|.+...|...- ..+.+|+.|-|.+..+.+.-....+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 46788999999999975 233334589999999999999876553321 24568999999888887766666678888
Q ss_pred cchhccCccccc
Q 045166 98 AMKIVNTSALRY 109 (305)
Q Consensus 98 ~L~~L~l~~~~~ 109 (305)
.++.|.++.|++
T Consensus 147 ~vtelHmS~N~~ 158 (418)
T KOG2982|consen 147 KVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhccchh
Confidence 899998888643
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.87 E-value=5.5e-06 Score=81.72 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=51.9
Q ss_pred hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166 17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW 96 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l 96 (305)
.|..++.|++|||++|.=-+.+|..++.|-+|++|++++..+. .+|..+ .++..|.+||+..+.....+| +....+
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l--~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L 641 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL--GNLKKLIYLNLEVTGRLESIP-GILLEL 641 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH--HHHHhhheecccccccccccc-chhhhc
Confidence 3555666666666666555556666666666666666666665 356666 666666666666655543343 334556
Q ss_pred ccchhccCc
Q 045166 97 NAMKIVNTS 105 (305)
Q Consensus 97 ~~L~~L~l~ 105 (305)
.+|++|.+.
T Consensus 642 ~~Lr~L~l~ 650 (889)
T KOG4658|consen 642 QSLRVLRLP 650 (889)
T ss_pred ccccEEEee
Confidence 666666553
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=6.9e-07 Score=75.21 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=11.9
Q ss_pred cccccccEEEccCCc
Q 045166 145 KIPNILAGIILSNNR 159 (305)
Q Consensus 145 ~~~~~L~~LdLs~N~ 159 (305)
..+++|..||||+|.
T Consensus 310 ~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSV 324 (419)
T ss_pred HhCCceeeecccccc
Confidence 347889999999864
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=3.4e-05 Score=61.62 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=57.1
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.+||++|.+. .+ +.|..++.|.+|.+++|.|+..-|.--.-+++|+.|.|.+|.+... .+--....++.|++|.+-+
T Consensus 46 ~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 46 AIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred eecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCccceeeecC
Confidence 3566666665 22 2455666777777777777764444333456677777777766531 1111114566777777777
Q ss_pred CcccccCCh---hhhhCcccchhccCcc
Q 045166 82 NRFTGKLPS---NSFLCWNAMKIVNTSA 106 (305)
Q Consensus 82 N~l~g~lp~---~~~~~l~~L~~L~l~~ 106 (305)
|..+ .-.. -.+..+++|++||.+.
T Consensus 123 Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred Cchh-cccCceeEEEEecCcceEeehhh
Confidence 7665 2221 1245566666666654
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=5.6e-05 Score=60.43 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=58.0
Q ss_pred CCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh-hhhhCcccc
Q 045166 21 CSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS-NSFLCWNAM 99 (305)
Q Consensus 21 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~-~~~~~l~~L 99 (305)
+.+...+||++|.+.. + +.|..++.|.+|.|++|+++.+-|.-- .-+++|..|.|.+|++. .+-+ +-+..++.|
T Consensus 41 ~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~--~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLD--TFLPNLKTLILTNNSIQ-ELGDLDPLASCPKL 115 (233)
T ss_pred ccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchh--hhccccceEEecCcchh-hhhhcchhccCCcc
Confidence 4567788999998864 3 356788899999999999987655443 45678999999999887 4321 114556677
Q ss_pred hhccCccc
Q 045166 100 KIVNTSAL 107 (305)
Q Consensus 100 ~~L~l~~~ 107 (305)
+.|.+-+|
T Consensus 116 ~~Ltll~N 123 (233)
T KOG1644|consen 116 EYLTLLGN 123 (233)
T ss_pred ceeeecCC
Confidence 77665443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=2.2e-05 Score=66.31 Aligned_cols=83 Identities=22% Similarity=0.159 Sum_probs=60.8
Q ss_pred EEEcccCcccc--ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 2 FYLRNENTFLQ--RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 2 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
.|||.+|.|+. ++-..+.+|+.|++|+|++|+++..+-..-..+.+|++|.|.+..+...--.++. ..+|.++.|.+
T Consensus 75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~lP~vtelHm 153 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DDLPKVTELHM 153 (418)
T ss_pred hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hcchhhhhhhh
Confidence 58999999984 4555667899999999999999864332214567899999988776543222221 57788899999
Q ss_pred CCCccc
Q 045166 80 SDNRFT 85 (305)
Q Consensus 80 s~N~l~ 85 (305)
|.|++.
T Consensus 154 S~N~~r 159 (418)
T KOG2982|consen 154 SDNSLR 159 (418)
T ss_pred ccchhh
Confidence 999554
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.63 E-value=1.7e-05 Score=68.27 Aligned_cols=83 Identities=22% Similarity=0.125 Sum_probs=41.9
Q ss_pred EEEcccCccccc----cChhhhcCCCCCEEeccCccccc----Ccchh-------hcCCCCCCEEEcccccceeeeCCCC
Q 045166 2 FYLRNENTFLQR----IPRSLINCSKLEFLGLGINQISD----TFPSW-------LGTLPKLNVLILRSNIFYGIIEEPR 66 (305)
Q Consensus 2 ~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~~-------~~~l~~L~~L~L~~N~l~~~~p~~~ 66 (305)
.++||+|.|... +.+.+.+.++|+..+++.= ++| .+|+. +-.+++|++|+||.|-|.-.-+..+
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l 112 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGL 112 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHH
Confidence 467777776532 3344455566666666542 222 23332 2244566666666666543222221
Q ss_pred C--CCCCCCccEEeCCCCccc
Q 045166 67 T--SCGFSKLRIIDLSDNRFT 85 (305)
Q Consensus 67 ~--~~~l~~L~~L~Ls~N~l~ 85 (305)
. ..++..|+.|.|.+|-+.
T Consensus 113 ~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 113 EELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HHHHHhccCHHHHhhhcCCCC
Confidence 0 023456666666666554
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.59 E-value=2.7e-05 Score=75.08 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=93.7
Q ss_pred CCCCEEeccCccc-ccCcchhhc-CCCCCCEEEcccccceee-eCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166 22 SKLEFLGLGINQI-SDTFPSWLG-TLPKLNVLILRSNIFYGI-IEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA 98 (305)
Q Consensus 22 ~~L~~L~L~~N~l-~~~~p~~~~-~l~~L~~L~L~~N~l~~~-~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~ 98 (305)
.+|+.||+++.+. +...|..++ .+|+|+.|.+++=.+... +-.-. .++++|..||+|+.+++ .+- + ++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc--~sFpNL~sLDIS~TnI~-nl~-G-IS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLC--ASFPNLRSLDISGTNIS-NLS-G-ISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHh--hccCccceeecCCCCcc-CcH-H-Hhcccc
Confidence 6789999998764 333555566 589999999988655432 11122 57899999999999998 562 4 899999
Q ss_pred chhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee
Q 045166 99 MKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG 178 (305)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g 178 (305)
|+.|.+.+..+..... ..+.+ .+++|+.||+|..+.. ..+..+..
T Consensus 197 Lq~L~mrnLe~e~~~~-------------------------l~~LF-~L~~L~vLDIS~~~~~-~~~~ii~q-------- 241 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQD-------------------------LIDLF-NLKKLRVLDISRDKNN-DDTKIIEQ-------- 241 (699)
T ss_pred HHHHhccCCCCCchhh-------------------------HHHHh-cccCCCeeeccccccc-cchHHHHH--------
Confidence 9999987733221000 00111 2889999999998766 22221110
Q ss_pred cCCccccCCCCCCEEeccCCcceecC
Q 045166 179 RIPQQLAELTFLAFFNVSDNYLTGPI 204 (305)
Q Consensus 179 ~ip~~l~~l~~L~~L~Ls~N~l~g~i 204 (305)
.-+.-..||.|+.||.|+..+...+
T Consensus 242 -Ylec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 242 -YLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred -HHHhcccCccccEEecCCcchhHHH
Confidence 0122345889999999988876543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.32 E-value=0.00081 Score=60.41 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=39.7
Q ss_pred hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC-cccccCCh
Q 045166 18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN-RFTGKLPS 90 (305)
Q Consensus 18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N-~l~g~lp~ 90 (305)
+..+.+++.|++++|.++. +|. --.+|++|.++++.-...+|..+ .++|++|++++| .+. .+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~-sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS-GLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc-cccc
Confidence 3446778888888887765 562 12358888887643333455443 246788888877 554 5664
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.25 E-value=0.0019 Score=58.06 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccc-cceeeeCCCCCCCCCCCccEEe
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSN-IFYGIIEEPRTSCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~l~~L~~L~ 78 (305)
..|++++|.++ .+|. -..+|+.|++++ +.++ .+|+.+. ++|++|++++| .+. .+|. +|+.|+
T Consensus 55 ~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~--------sLe~L~ 118 (426)
T PRK15386 55 GRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE--------SVRSLE 118 (426)
T ss_pred CEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc--------ccceEE
Confidence 36999999888 6672 245799999987 4443 4776553 68999999998 443 3443 467777
Q ss_pred CCCCcc
Q 045166 79 LSDNRF 84 (305)
Q Consensus 79 Ls~N~l 84 (305)
++.|..
T Consensus 119 L~~n~~ 124 (426)
T PRK15386 119 IKGSAT 124 (426)
T ss_pred eCCCCC
Confidence 877664
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.01 E-value=0.00024 Score=68.65 Aligned_cols=140 Identities=11% Similarity=0.198 Sum_probs=91.7
Q ss_pred CEEEcccCccc-cccChhhhc-CCCCCEEeccCcccccC-cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEE
Q 045166 1 MFYLRNENTFL-QRIPRSLIN-CSKLEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~N~l~-~~~p~~~~~-l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L 77 (305)
++||+++.... ..-|..++. +++|+.|.+.+-.+... +-....++++|..||+|+.+++-. ..+ +.+++|+.|
T Consensus 125 ~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GI--S~LknLq~L 200 (699)
T KOG3665|consen 125 QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGI--SRLKNLQVL 200 (699)
T ss_pred hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHH--hccccHHHH
Confidence 46788876643 234455554 79999999999877542 223345899999999999988753 345 789999999
Q ss_pred eCCCCcccccCC--hhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEc
Q 045166 78 DLSDNRFTGKLP--SNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIIL 155 (305)
Q Consensus 78 ~Ls~N~l~g~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdL 155 (305)
.+.+=.+. .-. .+ +-+|++|+.||+|.-....... +...+ .+-...+++|+.||.
T Consensus 201 ~mrnLe~e-~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~---------ii~qY------------lec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 201 SMRNLEFE-SYQDLID-LFNLKKLRVLDISRDKNNDDTK---------IIEQY------------LECGMVLPELRFLDC 257 (699)
T ss_pred hccCCCCC-chhhHHH-HhcccCCCeeeccccccccchH---------HHHHH------------HHhcccCccccEEec
Confidence 88876665 222 13 5579999999998732211100 00000 111223789999999
Q ss_pred cCCccccccchh
Q 045166 156 SNNRFDGAIPAS 167 (305)
Q Consensus 156 s~N~l~g~~p~~ 167 (305)
|+..+.+.+-+.
T Consensus 258 SgTdi~~~~le~ 269 (699)
T KOG3665|consen 258 SGTDINEEILEE 269 (699)
T ss_pred CCcchhHHHHHH
Confidence 998887654443
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.97 E-value=0.00038 Score=34.99 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=16.7
Q ss_pred cccEEEccCCccccccchhhcCC
Q 045166 149 ILAGIILSNNRFDGAIPASIANL 171 (305)
Q Consensus 149 ~L~~LdLs~N~l~g~~p~~~~~L 171 (305)
+|++|||++|+|+ .+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788899999988 788776543
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00061 Score=56.68 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=44.9
Q ss_pred cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccc--cceeeeCCCCCCCCCCCccEEeCCCCcccc--cCC
Q 045166 14 IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSN--IFYGIIEEPRTSCGFSKLRIIDLSDNRFTG--KLP 89 (305)
Q Consensus 14 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g--~lp 89 (305)
+..-...+..|+.|.+.+-.++. + ..+-.|++|+.|.++.| ...+.++... ..+++|++++++.|++.- +++
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~--e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLA--EKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehh--hhCCceeEEeecCCccccccccc
Confidence 33333344455555555544443 1 12335666777777777 4444333333 345677777777776651 121
Q ss_pred hhhhhCcccchhccCccc
Q 045166 90 SNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 90 ~~~~~~l~~L~~L~l~~~ 107 (305)
. ...+.+|..|++.+|
T Consensus 111 p--l~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 111 P--LKELENLKSLDLFNC 126 (260)
T ss_pred h--hhhhcchhhhhcccC
Confidence 1 344555666666553
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.78 E-value=0.00055 Score=56.92 Aligned_cols=64 Identities=25% Similarity=0.245 Sum_probs=32.0
Q ss_pred cCCCCCEEeccCc--ccccCcchhhcCCCCCCEEEcccccceeeeCCCC-CCCCCCCccEEeCCCCccc
Q 045166 20 NCSKLEFLGLGIN--QISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR-TSCGFSKLRIIDLSDNRFT 85 (305)
Q Consensus 20 ~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~l~~L~~L~Ls~N~l~ 85 (305)
.|++|+.|.++.| ++++.++.....+++|++|+++.|++.- +..+ ....+.+|..||+.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 4555666666666 4444444434444666666666666542 1111 0034445556666555544
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.72 E-value=0.0011 Score=55.67 Aligned_cols=167 Identities=20% Similarity=0.203 Sum_probs=92.3
Q ss_pred hhhcCCCCCEEeccCcccccCcchhhc----CCCCCCEEEcccccceeee----CC-------CCCCCCCCCccEEeCCC
Q 045166 17 SLINCSKLEFLGLGINQISDTFPSWLG----TLPKLNVLILRSNIFYGII----EE-------PRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~~----p~-------~~~~~~l~~L~~L~Ls~ 81 (305)
.+..+..++.++||+|.|...--.+++ +-.+|+..+++.- ++|.. +. .+ .+|+.|+..+||+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aL--lkcp~l~~v~LSD 101 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKAL--LKCPRLQKVDLSD 101 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHH--hcCCcceeeeccc
Confidence 344577888888888888754444443 4466777776653 22211 11 22 5778888888888
Q ss_pred CcccccCChh---hhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCC
Q 045166 82 NRFTGKLPSN---SFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNN 158 (305)
Q Consensus 82 N~l~g~lp~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N 158 (305)
|.|....|.. .++.-+.|.+|.+++|.. + ++.-+.+...++. +..+. -...-+.|+.++...|
T Consensus 102 NAfg~~~~e~L~d~is~~t~l~HL~l~NnGl-G--p~aG~rigkal~~-------la~nK----Kaa~kp~Le~vicgrN 167 (388)
T COG5238 102 NAFGSEFPEELGDLISSSTDLVHLKLNNNGL-G--PIAGGRIGKALFH-------LAYNK----KAADKPKLEVVICGRN 167 (388)
T ss_pred cccCcccchHHHHHHhcCCCceeEEeecCCC-C--ccchhHHHHHHHH-------HHHHh----hhccCCCceEEEeccc
Confidence 8887666643 355667788888777422 1 0000100000000 00000 0011355778888888
Q ss_pred ccccccchhh--------cCCCCce--eeecCCcc--------ccCCCCCCEEeccCCcce
Q 045166 159 RFDGAIPASI--------ANLKGLQ--FSGRIPQQ--------LAELTFLAFFNVSDNYLT 201 (305)
Q Consensus 159 ~l~g~~p~~~--------~~L~~L~--l~g~ip~~--------l~~l~~L~~L~Ls~N~l~ 201 (305)
++. .-|... .++..++ -.|.-|.. +.-+.+|+.||++.|-|+
T Consensus 168 Rle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 168 RLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 876 333221 1233333 34445542 334789999999999887
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.00084 Score=33.73 Aligned_cols=12 Identities=33% Similarity=0.260 Sum_probs=5.3
Q ss_pred CCEEEcccccce
Q 045166 48 LNVLILRSNIFY 59 (305)
Q Consensus 48 L~~L~L~~N~l~ 59 (305)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.0088 Score=44.82 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=51.3
Q ss_pred ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166 15 PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL 94 (305)
Q Consensus 15 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~ 94 (305)
..+|.++++|+.+.+.. .+...-...|.++++|+.+.+..+ +...-...| .++++++.+.+.+ .+. .++...|.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~-~~~-~i~~~~F~ 78 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN-NLK-SIGDNAFS 78 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS-TT--EE-TTTTT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc-ccc-cccccccc
Confidence 45788888999999875 566544456778888999998875 654444445 7777899999876 554 56666677
Q ss_pred CcccchhccCcc
Q 045166 95 CWNAMKIVNTSA 106 (305)
Q Consensus 95 ~l~~L~~L~l~~ 106 (305)
..++|+.+.+..
T Consensus 79 ~~~~l~~i~~~~ 90 (129)
T PF13306_consen 79 NCTNLKNIDIPS 90 (129)
T ss_dssp T-TTECEEEETT
T ss_pred ccccccccccCc
Confidence 778887777643
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.48 E-value=0.0033 Score=52.89 Aligned_cols=157 Identities=14% Similarity=0.010 Sum_probs=82.6
Q ss_pred EEEcccCcccccc----ChhhhcCCCCCEEeccCccccc---Ccch-------hhcCCCCCCEEEcccccceeeeCCCCC
Q 045166 2 FYLRNENTFLQRI----PRSLINCSKLEFLGLGINQISD---TFPS-------WLGTLPKLNVLILRSNIFYGIIEEPRT 67 (305)
Q Consensus 2 ~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~---~~p~-------~~~~l~~L~~L~L~~N~l~~~~p~~~~ 67 (305)
.+|||+|-|..+- ...+.+-.+|+..+++.-.... .+|+ .+-.|++|+..+||.|.|....|+.+.
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 5788999887543 3344556777777776643221 2222 334678888888888877665555430
Q ss_pred --CCCCCCccEEeCCCCcccccCChhhhh-------------CcccchhccCcccccccccccCCCCcCCCcc-cccccc
Q 045166 68 --SCGFSKLRIIDLSDNRFTGKLPSNSFL-------------CWNAMKIVNTSALRYLQDVLFPYGQVSSNVL-GTYDYS 131 (305)
Q Consensus 68 --~~~l~~L~~L~Ls~N~l~g~lp~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 131 (305)
..+-+.|.+|.+++|.+- .+...-++ .-+.|++.....|++.....-.. ...+. ...+..
T Consensus 114 d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~---a~~l~sh~~lk~ 189 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELS---AALLESHENLKE 189 (388)
T ss_pred HHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHH---HHHHHhhcCcee
Confidence 134467788888887764 43322121 12233333333332211100000 00000 012334
Q ss_pred ccccccCcccccc--------cccccccEEEccCCcccc
Q 045166 132 RTMNSKGRVMTYN--------KIPNILAGIILSNNRFDG 162 (305)
Q Consensus 132 ~~~~~~~~~~~~~--------~~~~~L~~LdLs~N~l~g 162 (305)
+.+..+++.+.-. .-+.+|+.|||..|-|+-
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 4455566554421 126789999999999873
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00017 Score=60.59 Aligned_cols=96 Identities=23% Similarity=0.202 Sum_probs=71.4
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 82 (305)
|++=++.++. + .....|+.|++|.|+-|.|+..- .+..+++|++|+|..|.|.. +.+-+...++++|+.|-|..|
T Consensus 24 LNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 24 LNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccCCCccH-H-HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccC
Confidence 4444555542 1 13457899999999999998743 47889999999999999864 333333378899999999999
Q ss_pred cccccCChh----hhhCcccchhcc
Q 045166 83 RFTGKLPSN----SFLCWNAMKIVN 103 (305)
Q Consensus 83 ~l~g~lp~~----~~~~l~~L~~L~ 103 (305)
.-.|.-+.. .+.-+++|++||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 998876643 356688888887
No 66
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.00013 Score=61.91 Aligned_cols=81 Identities=22% Similarity=0.128 Sum_probs=36.0
Q ss_pred CCEEeccCcccccC-cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC-cccccCChhhhhCcccchh
Q 045166 24 LEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN-RFTGKLPSNSFLCWNAMKI 101 (305)
Q Consensus 24 L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N-~l~g~lp~~~~~~l~~L~~ 101 (305)
|+.|||++..|+.. +-..+..+.+|+.|.|.++++...+-..+ ++-.+|+.|+++.. .|+..--.-++.+++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i--AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI--AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH--hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 55555555555421 11223345555555555555554443333 44445555555532 2221111122444555555
Q ss_pred ccCcc
Q 045166 102 VNTSA 106 (305)
Q Consensus 102 L~l~~ 106 (305)
|+++.
T Consensus 265 LNlsW 269 (419)
T KOG2120|consen 265 LNLSW 269 (419)
T ss_pred cCchH
Confidence 55444
No 67
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.63 E-value=0.011 Score=30.83 Aligned_cols=23 Identities=39% Similarity=0.767 Sum_probs=17.5
Q ss_pred CCCccEEeCCCCcccccCChhhhh
Q 045166 71 FSKLRIIDLSDNRFTGKLPSNSFL 94 (305)
Q Consensus 71 l~~L~~L~Ls~N~l~g~lp~~~~~ 94 (305)
+++|++|+|++|+++ .+|.+.|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 78876553
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.63 E-value=0.011 Score=30.83 Aligned_cols=23 Identities=39% Similarity=0.767 Sum_probs=17.5
Q ss_pred CCCccEEeCCCCcccccCChhhhh
Q 045166 71 FSKLRIIDLSDNRFTGKLPSNSFL 94 (305)
Q Consensus 71 l~~L~~L~Ls~N~l~g~lp~~~~~ 94 (305)
+++|++|+|++|+++ .+|.+.|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 78876553
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.62 E-value=0.038 Score=41.33 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=57.9
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 82 (305)
+.+.. .+...-...|.++++|+.+.+.++ +...-...|.++++++.+.+.+ .+...-...| ..+++|+.+++..+
T Consensus 17 i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F--~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 17 ITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF--SNCTNLKNIDIPSN 91 (129)
T ss_dssp EEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT--TT-TTECEEEETTT
T ss_pred EEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc--cccccccccccCcc
Confidence 44543 455455667899999999999886 6653444677888999999976 4544444455 67899999999876
Q ss_pred cccccCChhhhhCcccchhccCcc
Q 045166 83 RFTGKLPSNSFLCWNAMKIVNTSA 106 (305)
Q Consensus 83 ~l~g~lp~~~~~~l~~L~~L~l~~ 106 (305)
+. .++...|.+. .++.+.+..
T Consensus 92 -~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 92 -IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp --B-EEHTTTTTT--T--EEE-TT
T ss_pred -cc-EEchhhhcCC-CceEEEECC
Confidence 65 6666768776 787777654
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.43 E-value=0.0081 Score=27.99 Aligned_cols=13 Identities=62% Similarity=0.968 Sum_probs=5.1
Q ss_pred CccEEeCCCCccc
Q 045166 73 KLRIIDLSDNRFT 85 (305)
Q Consensus 73 ~L~~L~Ls~N~l~ 85 (305)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.28 E-value=0.011 Score=27.53 Aligned_cols=13 Identities=46% Similarity=0.488 Sum_probs=6.2
Q ss_pred cccEEEccCCccc
Q 045166 149 ILAGIILSNNRFD 161 (305)
Q Consensus 149 ~L~~LdLs~N~l~ 161 (305)
+|+.|||++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666655
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.87 E-value=0.00064 Score=55.76 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=42.5
Q ss_pred hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166 17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW 96 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l 96 (305)
++......+.||++.|++.. +-..|.-++.|..|+++.|.+. ..|..+ +....++.+++..|..+ ..|.+ ++..
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~--~q~~e~~~~~~~~n~~~-~~p~s-~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDA--KQQRETVNAASHKNNHS-QQPKS-QKKE 110 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhH--HHHHHHHHHHhhccchh-hCCcc-cccc
Confidence 34445555555555555543 3334444555555555555554 244444 44455555555555555 55544 5555
Q ss_pred ccchhccCcc
Q 045166 97 NAMKIVNTSA 106 (305)
Q Consensus 97 ~~L~~L~l~~ 106 (305)
+.++++++-.
T Consensus 111 ~~~k~~e~k~ 120 (326)
T KOG0473|consen 111 PHPKKNEQKK 120 (326)
T ss_pred CCcchhhhcc
Confidence 5555554444
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.0019 Score=54.50 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=63.1
Q ss_pred cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh-hhhhCccc
Q 045166 20 NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS-NSFLCWNA 98 (305)
Q Consensus 20 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~-~~~~~l~~ 98 (305)
.+.+.+.|+.=++.++.+ .....++.|++|.||-|+++..- ++ ..|++|+.|+|..|.|. .+.+ ..+.++++
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl--~rCtrLkElYLRkN~I~-sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PL--QRCTRLKELYLRKNCIE-SLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hH--HHHHHHHHHHHHhcccc-cHHHHHHHhcCch
Confidence 356778888888888762 23458999999999999998754 34 67899999999999998 5542 34678889
Q ss_pred chhccCccc
Q 045166 99 MKIVNTSAL 107 (305)
Q Consensus 99 L~~L~l~~~ 107 (305)
|+.|-+..|
T Consensus 90 Lr~LWL~EN 98 (388)
T KOG2123|consen 90 LRTLWLDEN 98 (388)
T ss_pred hhhHhhccC
Confidence 999888765
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.43 E-value=0.0013 Score=54.05 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=66.2
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
+||++.|++. .+-..|.-++.|..||++.|++.- .|..++.+..+..+++..|.+.. .|.++ +..+.++++++-.
T Consensus 46 vld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~-~p~s~--~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 46 VLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQ-QPKSQ--KKEPHPKKNEQKK 120 (326)
T ss_pred eehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhh-CCccc--cccCCcchhhhcc
Confidence 5888888887 566778888888999999999875 88888888888888888888864 77777 8889999999988
Q ss_pred Cccc
Q 045166 82 NRFT 85 (305)
Q Consensus 82 N~l~ 85 (305)
|.+.
T Consensus 121 ~~~~ 124 (326)
T KOG0473|consen 121 TEFF 124 (326)
T ss_pred Ccch
Confidence 8876
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.20 E-value=0.14 Score=26.53 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=11.4
Q ss_pred CCCCCEEeccCcccccCcch
Q 045166 21 CSKLEFLGLGINQISDTFPS 40 (305)
Q Consensus 21 l~~L~~L~L~~N~l~~~~p~ 40 (305)
+++|+.|+|++|+|+. +|.
T Consensus 1 L~~L~~L~L~~N~l~~-lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSS-LPP 19 (26)
T ss_pred CCCCCEEECCCCcCCc-CCH
Confidence 3556666666666665 443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.20 E-value=0.14 Score=26.53 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=11.4
Q ss_pred CCCCCEEeccCcccccCcch
Q 045166 21 CSKLEFLGLGINQISDTFPS 40 (305)
Q Consensus 21 l~~L~~L~L~~N~l~~~~p~ 40 (305)
+++|+.|+|++|+|+. +|.
T Consensus 1 L~~L~~L~L~~N~l~~-lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSS-LPP 19 (26)
T ss_pred CCCCCEEECCCCcCCc-CCH
Confidence 3556666666666665 443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.48 E-value=0.059 Score=27.40 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=10.3
Q ss_pred ccccEEEccCCccccccch
Q 045166 148 NILAGIILSNNRFDGAIPA 166 (305)
Q Consensus 148 ~~L~~LdLs~N~l~g~~p~ 166 (305)
++|+.|||++|+|++.-..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4566777777776654433
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.83 E-value=0.36 Score=25.12 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=14.7
Q ss_pred CCccEEeCCCCcccccCCh
Q 045166 72 SKLRIIDLSDNRFTGKLPS 90 (305)
Q Consensus 72 ~~L~~L~Ls~N~l~g~lp~ 90 (305)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35888999999998 8885
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.73 E-value=0.57 Score=24.42 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=6.2
Q ss_pred CCCCEEeccCccc
Q 045166 22 SKLEFLGLGINQI 34 (305)
Q Consensus 22 ~~L~~L~L~~N~l 34 (305)
++|+.|++++|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3444455555544
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.14 E-value=1.2 Score=23.58 Aligned_cols=14 Identities=29% Similarity=0.282 Sum_probs=10.5
Q ss_pred CCCCEEeccCCcce
Q 045166 188 TFLAFFNVSDNYLT 201 (305)
Q Consensus 188 ~~L~~L~Ls~N~l~ 201 (305)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888774
No 81
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=78.19 E-value=3 Score=23.75 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=6.9
Q ss_pred ehhhhhhhhhHHHHH
Q 045166 265 GYAGGLVAGLVLGFN 279 (305)
Q Consensus 265 ~~~~~~~~~~~~~~~ 279 (305)
++++++++++++.++
T Consensus 7 aIIv~V~vg~~iiii 21 (38)
T PF02439_consen 7 AIIVAVVVGMAIIII 21 (38)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444445555444433
No 82
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=76.32 E-value=1.6 Score=33.52 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=3.4
Q ss_pred eEEeeehhh
Q 045166 260 KIILTGYAG 268 (305)
Q Consensus 260 ~~~~~~~~~ 268 (305)
+.+++|+++
T Consensus 52 IGvVVGVGg 60 (154)
T PF04478_consen 52 IGVVVGVGG 60 (154)
T ss_pred EEEEecccH
Confidence 333444333
No 83
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=75.87 E-value=5.4 Score=23.01 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=5.6
Q ss_pred hhhhHHHHh
Q 045166 284 IIGWILEKL 292 (305)
Q Consensus 284 ~~~w~~~~~ 292 (305)
.|+|..|..
T Consensus 30 YRKw~aRkr 38 (43)
T PF08114_consen 30 YRKWQARKR 38 (43)
T ss_pred HHHHHHHHH
Confidence 467776654
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.69 E-value=0.69 Score=37.50 Aligned_cols=83 Identities=18% Similarity=0.084 Sum_probs=55.4
Q ss_pred CCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeC-CCCCCCCCCCccEEeCCCC-cccccCChhhhhCcccc
Q 045166 22 SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE-EPRTSCGFSKLRIIDLSDN-RFTGKLPSNSFLCWNAM 99 (305)
Q Consensus 22 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~l~~L~~L~Ls~N-~l~g~lp~~~~~~l~~L 99 (305)
..++.+|.++..|...--+.+.+++.++.|.+.++.-.+..- +.++ +-.++|+.|+++.| +|+ .---.++..+++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRIT-DGGLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeec-hhHHHHHHHhhhh
Confidence 457888999988876544567788888888888776432110 0011 23578999999976 555 3333457778888
Q ss_pred hhccCcc
Q 045166 100 KIVNTSA 106 (305)
Q Consensus 100 ~~L~l~~ 106 (305)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 8888766
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=75.27 E-value=1.3 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=20.8
Q ss_pred EccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 154 ILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 154 dLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
||++|+|+ .+|.. .|..+++|+.|+|++|.+.+
T Consensus 1 DLSnN~Ls-tLp~g---------------~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKIS-TIEEG---------------ICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCC-ccChH---------------HhccCCCceEEEeeCCcccc
Confidence 56777777 55542 35566777777776666554
No 86
>PF15069 FAM163: FAM163 family
Probab=70.16 E-value=9.1 Score=29.06 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=12.0
Q ss_pred EeeehhhhhhhhhHHHHHHhhchhhhH
Q 045166 262 ILTGYAGGLVAGLVLGFNFSTGIIGWI 288 (305)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~w~ 288 (305)
|+.|.+.+.++.+.+++++.+-|..+|
T Consensus 7 VItGgILAtVILLcIIaVLCYCRLQYY 33 (143)
T PF15069_consen 7 VITGGILATVILLCIIAVLCYCRLQYY 33 (143)
T ss_pred EEechHHHHHHHHHHHHHHHHHhhHHH
Confidence 333433444444444444444455555
No 87
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=70.03 E-value=2.7 Score=32.30 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=13.1
Q ss_pred EEeeehhhhhhhhhHHHHH
Q 045166 261 IILTGYAGGLVAGLVLGFN 279 (305)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~ 279 (305)
-++||+++|+.+.++++++
T Consensus 49 nIVIGvVVGVGg~ill~il 67 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGIL 67 (154)
T ss_pred cEEEEEEecccHHHHHHHH
Confidence 5778888887776665543
No 88
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=67.03 E-value=4.1 Score=28.93 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=3.7
Q ss_pred hhhhHHHHHH
Q 045166 271 VAGLVLGFNF 280 (305)
Q Consensus 271 ~~~~~~~~~~ 280 (305)
++++++++++
T Consensus 78 ~v~~lv~~l~ 87 (96)
T PTZ00382 78 VVGGLVGFLC 87 (96)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 89
>PF15102 TMEM154: TMEM154 protein family
Probab=63.58 E-value=5.3 Score=30.51 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.2
Q ss_pred eEEeee
Q 045166 260 KIILTG 265 (305)
Q Consensus 260 ~~~~~~ 265 (305)
++|+|.
T Consensus 59 LmIlIP 64 (146)
T PF15102_consen 59 LMILIP 64 (146)
T ss_pred EEEeHH
Confidence 333333
No 90
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=61.25 E-value=5.7 Score=36.21 Aligned_cols=24 Identities=25% Similarity=0.044 Sum_probs=15.1
Q ss_pred eeEEeeehhhhhhhhhHHHHHHhh
Q 045166 259 WKIILTGYAGGLVAGLVLGFNFST 282 (305)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~ 282 (305)
..++.|+|++++||+.+|+++.||
T Consensus 367 gaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 367 GAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred cceeeeeehhHHHHHHHHHHHhhh
Confidence 344556666666777777777754
No 91
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=56.65 E-value=19 Score=28.74 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=2.8
Q ss_pred Eeeehhh
Q 045166 262 ILTGYAG 268 (305)
Q Consensus 262 ~~~~~~~ 268 (305)
+++++++
T Consensus 80 iivgvi~ 86 (179)
T PF13908_consen 80 IIVGVIC 86 (179)
T ss_pred eeeehhh
Confidence 3444433
No 92
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=56.16 E-value=3.7 Score=30.49 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.0
Q ss_pred eehhhhhhhhhHHH
Q 045166 264 TGYAGGLVAGLVLG 277 (305)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (305)
+++++++++|++..
T Consensus 67 ~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 67 IGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHH
Confidence 33444444444433
No 93
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=4.7 Score=32.85 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=39.8
Q ss_pred CccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccE
Q 045166 73 KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAG 152 (305)
Q Consensus 73 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 152 (305)
.++.+|-++..|.+.-- +-+.+++.++.|.+.++.++++.-.. ......++|+.
T Consensus 102 ~IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~-------------------------~l~~~~~~L~~ 155 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLE-------------------------RLGGLAPSLQD 155 (221)
T ss_pred eEEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHH-------------------------Hhcccccchhe
Confidence 48899999988884322 22666777777777766555432100 01123678999
Q ss_pred EEccCC-ccc
Q 045166 153 IILSNN-RFD 161 (305)
Q Consensus 153 LdLs~N-~l~ 161 (305)
|+|++| +||
T Consensus 156 L~lsgC~rIT 165 (221)
T KOG3864|consen 156 LDLSGCPRIT 165 (221)
T ss_pred eeccCCCeec
Confidence 999977 455
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.92 E-value=7.1 Score=29.01 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=5.6
Q ss_pred eEEeeehhhhhhh
Q 045166 260 KIILTGYAGGLVA 272 (305)
Q Consensus 260 ~~~~~~~~~~~~~ 272 (305)
.+|++|+++|++.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3444444444433
No 95
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=48.38 E-value=6.7 Score=36.18 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=40.3
Q ss_pred hhcCCCCCEEeccCc-ccccCcc----hhhcCCCCCCEEEccccc-ceeeeCCCCCCCCCCCccEEeCCCCc-ccccCCh
Q 045166 18 LINCSKLEFLGLGIN-QISDTFP----SWLGTLPKLNVLILRSNI-FYGIIEEPRTSCGFSKLRIIDLSDNR-FTGKLPS 90 (305)
Q Consensus 18 ~~~l~~L~~L~L~~N-~l~~~~p----~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~l~~L~~L~Ls~N~-l~g~lp~ 90 (305)
...+++|+.|+++++ ......+ .....+++|+.|++++.. ++...-..+. ..+++|+.|.+.++. ++..--.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~-~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA-SRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH-hhCCCcceEccCCCCccchhHHH
Confidence 345666777776652 1111111 122245666666666655 2211101110 125566666655544 3321111
Q ss_pred hhhhCcccchhccCccc
Q 045166 91 NSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 91 ~~~~~l~~L~~L~l~~~ 107 (305)
.+...++.|+.|+++.+
T Consensus 289 ~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGC 305 (482)
T ss_pred HHHHhcCcccEEeeecC
Confidence 22344556666666653
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=48.32 E-value=11 Score=42.41 Aligned_cols=32 Identities=16% Similarity=-0.012 Sum_probs=27.7
Q ss_pred EcccCccccccChhhhcCCCCCEEeccCcccc
Q 045166 4 LRNENTFLQRIPRSLINCSKLEFLGLGINQIS 35 (305)
Q Consensus 4 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 35 (305)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999666778888999999999999775
No 97
>PF15050 SCIMP: SCIMP protein
Probab=47.72 E-value=2.9 Score=30.51 Aligned_cols=9 Identities=22% Similarity=0.464 Sum_probs=4.8
Q ss_pred hhHHHHhcc
Q 045166 286 GWILEKLGN 294 (305)
Q Consensus 286 ~w~~~~~~~ 294 (305)
+|..|..++
T Consensus 32 R~~lRqGkk 40 (133)
T PF15050_consen 32 RWQLRQGKK 40 (133)
T ss_pred HHHHHcccc
Confidence 566655543
No 98
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=46.14 E-value=7.8 Score=35.74 Aligned_cols=86 Identities=22% Similarity=0.120 Sum_probs=52.3
Q ss_pred hhhcCCCCCEEeccCcc-cccCcchhhc-CCCCCCEEEccccc-ceeeeCCCCCCCCCCCccEEeCCCCccccc--CChh
Q 045166 17 SLINCSKLEFLGLGINQ-ISDTFPSWLG-TLPKLNVLILRSNI-FYGIIEEPRTSCGFSKLRIIDLSDNRFTGK--LPSN 91 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~--lp~~ 91 (305)
....+.+|+.|+++... ++...-..+. .+++|++|.+.++. ++..--..+. ..+++|+.|+++.+..... +...
T Consensus 238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~-~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA-ERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH-HhcCcccEEeeecCccchHHHHHHH
Confidence 44567999999999988 6543333343 38899999977766 3321111111 4678899999997765311 2222
Q ss_pred hhhCcccchhccC
Q 045166 92 SFLCWNAMKIVNT 104 (305)
Q Consensus 92 ~~~~l~~L~~L~l 104 (305)
..+.++++.+.+
T Consensus 317 -~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 317 -LKNCPNLRELKL 328 (482)
T ss_pred -HHhCcchhhhhh
Confidence 344555555543
No 99
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=42.79 E-value=44 Score=28.70 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=5.0
Q ss_pred Eeeehhhhhhh
Q 045166 262 ILTGYAGGLVA 272 (305)
Q Consensus 262 ~~~~~~~~~~~ 272 (305)
+++|++.|+++
T Consensus 215 iv~g~~~G~~~ 225 (278)
T PF06697_consen 215 IVVGVVGGVVL 225 (278)
T ss_pred EEEEehHHHHH
Confidence 44554444443
No 100
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=41.98 E-value=15 Score=22.29 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=14.1
Q ss_pred hhhHHHHhcccccCcccc
Q 045166 285 IGWILEKLGNVAKGNKEE 302 (305)
Q Consensus 285 ~~w~~~~~~~~~~~~~~~ 302 (305)
..||.+|++...|+..+.
T Consensus 29 ~dWYk~MfkqiHk~~~d~ 46 (50)
T smart00459 29 KDWYRTMFKQIHRKGPDG 46 (50)
T ss_pred HHHHHHHHHHHHccCCCc
Confidence 459999999888877443
No 101
>PF15050 SCIMP: SCIMP protein
Probab=41.30 E-value=22 Score=26.10 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=5.5
Q ss_pred ceeEEeeehhh
Q 045166 258 DWKIILTGYAG 268 (305)
Q Consensus 258 ~~~~~~~~~~~ 268 (305)
+|+++++++++
T Consensus 8 FWiiLAVaII~ 18 (133)
T PF15050_consen 8 FWIILAVAIIL 18 (133)
T ss_pred hHHHHHHHHHH
Confidence 46555555433
No 102
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.81 E-value=17 Score=34.28 Aligned_cols=82 Identities=17% Similarity=0.098 Sum_probs=43.9
Q ss_pred cCCCCCEEeccCcccccC--cchhhcCCCCCCEEEcccc--cceeeeCCCCCCCCCCCccEEeCCCCcccccCCh--h--
Q 045166 20 NCSKLEFLGLGINQISDT--FPSWLGTLPKLNVLILRSN--IFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS--N-- 91 (305)
Q Consensus 20 ~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~--~-- 91 (305)
+.+.+..+.|++|++-.. +..--...++|++|+|++| .+.... ++.--+...|+.|-+.+|.+....-. .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~--el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES--ELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh--hhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 345677778888877541 1111124578888888888 333211 11001223477888888887643321 1
Q ss_pred --hhhCcccchhcc
Q 045166 92 --SFLCWNAMKIVN 103 (305)
Q Consensus 92 --~~~~l~~L~~L~ 103 (305)
+-..++.|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 122455666555
No 103
>PF15102 TMEM154: TMEM154 protein family
Probab=38.90 E-value=38 Score=25.95 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=7.5
Q ss_pred ceeEEeeehhhhhh
Q 045166 258 DWKIILTGYAGGLV 271 (305)
Q Consensus 258 ~~~~~~~~~~~~~~ 271 (305)
...++.++++-.++
T Consensus 54 q~efiLmIlIP~VL 67 (146)
T PF15102_consen 54 QLEFILMILIPLVL 67 (146)
T ss_pred CcceEEEEeHHHHH
Confidence 34566666655333
No 104
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=37.88 E-value=19 Score=21.40 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=16.7
Q ss_pred chhhhHHHHhcccccCccccCC
Q 045166 283 GIIGWILEKLGNVAKGNKEEGE 304 (305)
Q Consensus 283 ~~~~w~~~~~~~~~~~~~~~~~ 304 (305)
+.+.||..|+++..+-.+.+.+
T Consensus 24 ~~kDWYktMFkqIHk~~~~dd~ 45 (47)
T PF02208_consen 24 RPKDWYKTMFKQIHKLHKPDDD 45 (47)
T ss_pred chhHHHHHHHHHHHhhcccccC
Confidence 4689999999987776665543
No 105
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.00 E-value=27 Score=17.71 Aligned_cols=11 Identities=27% Similarity=0.120 Sum_probs=5.8
Q ss_pred CCCCEEeccCc
Q 045166 22 SKLEFLGLGIN 32 (305)
Q Consensus 22 ~~L~~L~L~~N 32 (305)
++|+.|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555554
No 106
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=35.50 E-value=46 Score=22.75 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=9.4
Q ss_pred hhhhHHHHhcccccC
Q 045166 284 IIGWILEKLGNVAKG 298 (305)
Q Consensus 284 ~~~w~~~~~~~~~~~ 298 (305)
.|.|+.|.+.++-++
T Consensus 71 DRYwWvkh~DkRcrr 85 (89)
T PF10762_consen 71 DRYWWVKHFDKRCRR 85 (89)
T ss_pred hhHHHHHhhhHhhcc
Confidence 477888877644333
No 107
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.48 E-value=13 Score=24.06 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=5.6
Q ss_pred hhhhhhhHHHHHH
Q 045166 268 GGLVAGLVLGFNF 280 (305)
Q Consensus 268 ~~~~~~~~~~~~~ 280 (305)
+++++|++++.++
T Consensus 26 ~~f~~G~llg~l~ 38 (68)
T PF06305_consen 26 IAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 108
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=35.31 E-value=30 Score=22.68 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=8.4
Q ss_pred EeeehhhhhhhhhHHHHH
Q 045166 262 ILTGYAGGLVAGLVLGFN 279 (305)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~ 279 (305)
.+||++.+++++++-.+.
T Consensus 34 ~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 34 AAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 345555555544444333
No 109
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.14 E-value=21 Score=33.65 Aligned_cols=58 Identities=24% Similarity=0.169 Sum_probs=38.3
Q ss_pred EEEcccCccccc--cChhhhcCCCCCEEeccCc--ccccCcchhhcC--CCCCCEEEcccccceee
Q 045166 2 FYLRNENTFLQR--IPRSLINCSKLEFLGLGIN--QISDTFPSWLGT--LPKLNVLILRSNIFYGI 61 (305)
Q Consensus 2 ~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~ 61 (305)
.+.|++|++-.. +..--...++|..|+|++| .+.. -.++.. ...|++|.+.+|.+...
T Consensus 222 sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 222 SLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred eeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 477899998632 1122234688999999999 4432 223332 34589999999998753
No 110
>PRK10692 hypothetical protein; Provisional
Probab=33.84 E-value=52 Score=22.66 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=9.2
Q ss_pred hhhhHHHHhcccccC
Q 045166 284 IIGWILEKLGNVAKG 298 (305)
Q Consensus 284 ~~~w~~~~~~~~~~~ 298 (305)
.|.|+.+.+..+-++
T Consensus 71 DRYwwvkh~d~rcrr 85 (92)
T PRK10692 71 DRYWWVRHYDKRCRR 85 (92)
T ss_pred hhHHHHhhccHhhcc
Confidence 477777777544433
No 111
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=32.52 E-value=44 Score=24.28 Aligned_cols=30 Identities=27% Similarity=0.139 Sum_probs=13.4
Q ss_pred hhhhhhhHHHHHHhhchhhh-HHHHhccccc
Q 045166 268 GGLVAGLVLGFNFSTGIIGW-ILEKLGNVAK 297 (305)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~ 297 (305)
.++++|-.++++++++--.| |.+.+.-|.|
T Consensus 92 LGvV~GG~i~vLcylylPC~~~l~v~~cW~k 122 (127)
T PF06040_consen 92 LGVVAGGLIAVLCYLYLPCWVELVVLICWFK 122 (127)
T ss_pred HHHHhccHHHHHHHHhccHHHhhhhheeeee
Confidence 34444444444444344444 4444444443
No 112
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=32.16 E-value=38 Score=25.26 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=12.2
Q ss_pred eeEEeeehhhhhhhhhHHHHHHh
Q 045166 259 WKIILTGYAGGLVAGLVLGFNFS 281 (305)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~ 281 (305)
..++++.+++++.+++++..+.+
T Consensus 98 t~Yia~~~il~il~~i~is~~~~ 120 (139)
T PHA03099 98 TSYIPSPGIVLVLVGIIITCCLL 120 (139)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 113
>PRK11677 hypothetical protein; Provisional
Probab=31.54 E-value=9 Score=29.00 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=9.0
Q ss_pred hhhhhhhHHHHHHhhc
Q 045166 268 GGLVAGLVLGFNFSTG 283 (305)
Q Consensus 268 ~~~~~~~~~~~~~~~~ 283 (305)
+++++|+++++++.++
T Consensus 8 i~livG~iiG~~~~R~ 23 (134)
T PRK11677 8 IGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555566666555554
No 114
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=31.27 E-value=22 Score=24.30 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=10.2
Q ss_pred ceeEEeeehhhhhhhhhHHHHHH
Q 045166 258 DWKIILTGYAGGLVAGLVLGFNF 280 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~ 280 (305)
.|.+|+.+.+.+++.+.+.+.++
T Consensus 15 ~~yyiiA~gga~llL~~v~l~vv 37 (87)
T PF11980_consen 15 YWYYIIAMGGALLLLVAVCLGVV 37 (87)
T ss_pred eeeHHHhhccHHHHHHHHHHHHH
Confidence 45554444444444444443333
No 115
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=31.25 E-value=22 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=11.7
Q ss_pred ceeEEeeehhhhhhhhhHHHHHHhhchhhh
Q 045166 258 DWKIILTGYAGGLVAGLVLGFNFSTGIIGW 287 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 287 (305)
.|-+++.|. ++++.+++++++++.+.+|
T Consensus 41 yWpyLA~GG--G~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 41 YWPYLAAGG--GLILILIIIALVCCCRAKH 68 (98)
T ss_pred hhHHhhccc--hhhhHHHHHHHHHHhhhhh
Confidence 455555553 3333333333333334444
No 116
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=30.70 E-value=6.4 Score=27.41 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=11.7
Q ss_pred hhhhhhhhhHHHHHHhhchhh
Q 045166 266 YAGGLVAGLVLGFNFSTGIIG 286 (305)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~ 286 (305)
+++.+.+++.++++++|+.|.
T Consensus 11 ~g~llligftivvl~vyfgrk 31 (126)
T PF13120_consen 11 IGTLLLIGFTIVVLLVYFGRK 31 (126)
T ss_pred HHHHHHHHHHHHhhhheecce
Confidence 344555666666666665443
No 117
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=30.39 E-value=18 Score=21.62 Aligned_cols=9 Identities=11% Similarity=-0.034 Sum_probs=3.3
Q ss_pred hhhhhhhhh
Q 045166 266 YAGGLVAGL 274 (305)
Q Consensus 266 ~~~~~~~~~ 274 (305)
+++.+++.+
T Consensus 11 Yg~t~~~l~ 19 (46)
T PF04995_consen 11 YGVTALVLA 19 (46)
T ss_pred HHHHHHHHH
Confidence 333333333
No 118
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=29.83 E-value=16 Score=28.22 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=5.0
Q ss_pred HHHHhccccc
Q 045166 288 ILEKLGNVAK 297 (305)
Q Consensus 288 ~~~~~~~~~~ 297 (305)
|.+.+.++++
T Consensus 37 FRkkLr~rr~ 46 (148)
T TIGR00985 37 FRKKLRRRRK 46 (148)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 119
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=29.19 E-value=15 Score=26.65 Aligned_cols=11 Identities=9% Similarity=-0.291 Sum_probs=0.0
Q ss_pred HHHHHHhhchh
Q 045166 275 VLGFNFSTGII 285 (305)
Q Consensus 275 ~~~~~~~~~~~ 285 (305)
++++-+|++||
T Consensus 39 LLliGCWYckR 49 (118)
T PF14991_consen 39 LLLIGCWYCKR 49 (118)
T ss_dssp -----------
T ss_pred HHHHhheeeee
Confidence 33333444333
No 120
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=28.22 E-value=60 Score=21.06 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=8.1
Q ss_pred hhhhhhhhhHHHHHH
Q 045166 266 YAGGLVAGLVLGFNF 280 (305)
Q Consensus 266 ~~~~~~~~~~~~~~~ 280 (305)
+++++++|+++++++
T Consensus 3 iilali~G~~~Gff~ 17 (64)
T PF03672_consen 3 IILALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555666665554
No 121
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=27.80 E-value=82 Score=27.76 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=12.2
Q ss_pred hhhhhhHHHHHHhhchhhhHHHHhccc
Q 045166 269 GLVAGLVLGFNFSTGIIGWILEKLGNV 295 (305)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~w~~~~~~~~ 295 (305)
+.++|+.+++++++....|..+.+.++
T Consensus 289 ~~~~G~~~~~f~LYK~g~~~~~~~~r~ 315 (354)
T PF05795_consen 289 LSVLGIPLIFFLLYKFGSWFNRRRGRR 315 (354)
T ss_pred hhhHHHHHHHHHHhccchhhccccccc
Confidence 333444444444433355655554443
No 122
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=27.54 E-value=51 Score=26.52 Aligned_cols=18 Identities=6% Similarity=-0.125 Sum_probs=8.1
Q ss_pred eeEEeeehhhhhhhhhHH
Q 045166 259 WKIILTGYAGGLVAGLVL 276 (305)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~ 276 (305)
+..++|++-+++++++++
T Consensus 157 ~~~laI~lPvvv~~~~~~ 174 (189)
T PF14610_consen 157 KYALAIALPVVVVVLALI 174 (189)
T ss_pred ceeEEEEccHHHHHHHHH
Confidence 445555544444443333
No 123
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=26.36 E-value=61 Score=28.02 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=7.4
Q ss_pred CCccEEeCCCCccc
Q 045166 72 SKLRIIDLSDNRFT 85 (305)
Q Consensus 72 ~~L~~L~Ls~N~l~ 85 (305)
..+...|+..+..+
T Consensus 64 ~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 64 SNLATYDFKNQTWS 77 (281)
T ss_pred eeEEEEecCCCeee
Confidence 34555566555543
No 124
>PF15179 Myc_target_1: Myc target protein 1
Probab=25.88 E-value=42 Score=26.70 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=7.5
Q ss_pred eeehhhhhhhhhHHHHH
Q 045166 263 LTGYAGGLVAGLVLGFN 279 (305)
Q Consensus 263 ~~~~~~~~~~~~~~~~~ 279 (305)
++++.+.+++|++++++
T Consensus 22 IlaF~vSm~iGLviG~l 38 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGAL 38 (197)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 125
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.83 E-value=12 Score=27.77 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=10.2
Q ss_pred hhhhhhhhHHHHHHhhc
Q 045166 267 AGGLVAGLVLGFNFSTG 283 (305)
Q Consensus 267 ~~~~~~~~~~~~~~~~~ 283 (305)
++++|+|++|++++.+.
T Consensus 12 ~igLvvGi~IG~li~Rl 28 (138)
T COG3105 12 LIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666553
No 126
>PF10808 DUF2542: Protein of unknown function (DUF2542) ; InterPro: IPR020155 This entry represents transmembrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=24.65 E-value=56 Score=21.79 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=4.5
Q ss_pred HhhchhhhH
Q 045166 280 FSTGIIGWI 288 (305)
Q Consensus 280 ~~~~~~~w~ 288 (305)
++.+|..|.
T Consensus 17 ~f~fREa~K 25 (79)
T PF10808_consen 17 LFCFREAWK 25 (79)
T ss_pred HHHHHHHHH
Confidence 334465664
No 127
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.05 E-value=27 Score=22.42 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=3.2
Q ss_pred hhhhhhhHH
Q 045166 268 GGLVAGLVL 276 (305)
Q Consensus 268 ~~~~~~~~~ 276 (305)
+++++.+++
T Consensus 21 ~g~ll~flv 29 (69)
T PF04689_consen 21 AGLLLVFLV 29 (69)
T ss_pred HHHHHHHHH
Confidence 333333333
No 128
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=23.36 E-value=1.4e+02 Score=24.59 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=2.7
Q ss_pred eeEEeee
Q 045166 259 WKIILTG 265 (305)
Q Consensus 259 ~~~~~~~ 265 (305)
.++.+++
T Consensus 39 I~iaiVA 45 (221)
T PF08374_consen 39 IMIAIVA 45 (221)
T ss_pred eeeeeec
Confidence 3333343
No 129
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=23.13 E-value=27 Score=29.39 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=0.0
Q ss_pred ceeEEeeehhhhhhhhhHHHHHH
Q 045166 258 DWKIILTGYAGGLVAGLVLGFNF 280 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~ 280 (305)
.|..+++...+.+++|+++++++
T Consensus 214 q~~~iAL~sl~SLVIGFvlG~l~ 236 (273)
T PF02404_consen 214 QWPAIALPSLFSLVIGFVLGALY 236 (273)
T ss_dssp -----------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556677777777664
No 130
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.97 E-value=31 Score=25.90 Aligned_cols=14 Identities=36% Similarity=0.845 Sum_probs=6.0
Q ss_pred eehhhhhhhhhHHH
Q 045166 264 TGYAGGLVAGLVLG 277 (305)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (305)
+++++|+++|++++
T Consensus 4 i~lvvG~iiG~~~~ 17 (128)
T PF06295_consen 4 IGLVVGLIIGFLIG 17 (128)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 131
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=22.90 E-value=1.3e+02 Score=19.98 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=15.3
Q ss_pred HHHHHHhhchhhhHHHHhcccccCccccC
Q 045166 275 VLGFNFSTGIIGWILEKLGNVAKGNKEEG 303 (305)
Q Consensus 275 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 303 (305)
+...+++++-..|...-.....+-+.+++
T Consensus 14 ~~~T~lfYy~~~w~~~~~~~~hrY~eP~G 42 (71)
T PF14004_consen 14 TGCTLLFYYAILWVSDEYEPYHRYDEPEG 42 (71)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 33344555566676665554445554444
No 132
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=22.88 E-value=49 Score=34.27 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=14.1
Q ss_pred eeEEeeehhhhhhhhhHHHHHHhhchhhhHHH
Q 045166 259 WKIILTGYAGGLVAGLVLGFNFSTGIIGWILE 290 (305)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 290 (305)
|.+|++++++|+++.+++++++ ||..+++|
T Consensus 978 ~wiIi~svl~GLLlL~llv~~L--wK~GFFKR 1007 (1030)
T KOG3637|consen 978 LWIIILSVLGGLLLLALLVLLL--WKCGFFKR 1007 (1030)
T ss_pred eeeehHHHHHHHHHHHHHHHHH--HhcCcccc
Confidence 4455555555555444444443 34444433
No 133
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.66 E-value=26 Score=27.72 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=15.2
Q ss_pred ceeEEeeehhhhhhhhhHHHHHHhhchhhhH
Q 045166 258 DWKIILTGYAGGLVAGLVLGFNFSTGIIGWI 288 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 288 (305)
.|.-+..++.++.++..+++.+.+|...+|.
T Consensus 134 lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~ 164 (184)
T COG3216 134 LWGPVLKPMLVGAVPAGAIGGLLFYGLTRYS 164 (184)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3545555555555555555544444333333
No 134
>PF15179 Myc_target_1: Myc target protein 1
Probab=22.17 E-value=46 Score=26.49 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=14.8
Q ss_pred ceeEEeeehhhhhhhhhHHHHHHh
Q 045166 258 DWKIILTGYAGGLVAGLVLGFNFS 281 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~ 281 (305)
..+.+.+.+++|+++|.+|-+++.
T Consensus 21 lIlaF~vSm~iGLviG~li~~Llt 44 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWALLT 44 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777766655543
No 135
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=21.31 E-value=96 Score=23.85 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=12.7
Q ss_pred chhhhHHHHhcccccCcc
Q 045166 283 GIIGWILEKLGNVAKGNK 300 (305)
Q Consensus 283 ~~~~w~~~~~~~~~~~~~ 300 (305)
.+.+||.+.++.-.++|+
T Consensus 126 ~~h~wY~~~F~~yp~~R~ 143 (150)
T PF02544_consen 126 QTHRWYKKKFKEYPKNRK 143 (150)
T ss_pred HHHHHHHHHCccccCCCe
Confidence 568999999965555443
No 136
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.98 E-value=75 Score=27.76 Aligned_cols=8 Identities=0% Similarity=-0.417 Sum_probs=3.1
Q ss_pred HHHHHhhc
Q 045166 276 LGFNFSTG 283 (305)
Q Consensus 276 ~~~~~~~~ 283 (305)
|++++..|
T Consensus 269 VLIMvIIY 276 (299)
T PF02009_consen 269 VLIMVIIY 276 (299)
T ss_pred HHHHHHHH
Confidence 33344333
No 137
>PRK01821 hypothetical protein; Provisional
Probab=20.67 E-value=1.3e+02 Score=22.78 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=3.2
Q ss_pred hhHHHHh
Q 045166 286 GWILEKL 292 (305)
Q Consensus 286 ~w~~~~~ 292 (305)
.|..+..
T Consensus 116 ~~l~~~~ 122 (133)
T PRK01821 116 HYVHGER 122 (133)
T ss_pred HHHHhhh
Confidence 4554433
No 138
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=20.34 E-value=75 Score=25.96 Aligned_cols=7 Identities=14% Similarity=-0.035 Sum_probs=2.8
Q ss_pred eEEeeeh
Q 045166 260 KIILTGY 266 (305)
Q Consensus 260 ~~~~~~~ 266 (305)
.+|++.+
T Consensus 101 ~lI~lv~ 107 (202)
T PF06365_consen 101 TLIALVT 107 (202)
T ss_pred EEEehHH
Confidence 3444433
No 139
>PF15122 TMEM206: TMEM206 protein family
Probab=20.30 E-value=46 Score=27.83 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=12.6
Q ss_pred hhhHHHHhcccccCccc
Q 045166 285 IGWILEKLGNVAKGNKE 301 (305)
Q Consensus 285 ~~w~~~~~~~~~~~~~~ 301 (305)
..|..+++++..|+|.+
T Consensus 276 ikWmikiRkr~lk~~~~ 292 (298)
T PF15122_consen 276 IKWMIKIRKRHLKRRMR 292 (298)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 56999998877776643
No 140
>PF12216 m04gp34like: Immune evasion protein; InterPro: IPR022022 The proteins in this family are related to the m04 encoded protein gp34 of pathogenic microorganisms such as Murid herpesvirus 1. m06 and m152 genes are expressed earlier in the intracellular replication phases of these microorganism' life cycles. They function to inhibit MHC-1 loading and export. gp34 is theorized to prevent immune reactions from NK cells which would ordinarily recognise and attack cells lacking MHC.
Probab=20.16 E-value=1e+02 Score=26.53 Aligned_cols=10 Identities=10% Similarity=-0.290 Sum_probs=3.6
Q ss_pred eeehhhhhhh
Q 045166 263 LTGYAGGLVA 272 (305)
Q Consensus 263 ~~~~~~~~~~ 272 (305)
++++++.+++
T Consensus 235 ai~v~vv~i~ 244 (272)
T PF12216_consen 235 AIVVIVVLIF 244 (272)
T ss_pred EEEeeehhHH
Confidence 3333333333
Done!