Query 045166
Match_columns 305
No_of_seqs 422 out of 3799
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7E-33 2.4E-37 269.6 18.3 235 2-240 446-755 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-31 2E-35 230.1 14.5 227 2-233 54-312 (313)
3 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-27 7E-32 233.4 12.4 222 1-229 269-565 (844)
4 3rgz_A Protein brassinosteroid 99.9 6.1E-27 2.1E-31 227.8 15.3 221 1-224 421-717 (768)
5 3zyi_A Leucine-rich repeat-con 99.9 7.7E-26 2.6E-30 207.3 17.2 220 1-229 78-308 (452)
6 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-26 8E-31 200.9 12.8 191 22-223 50-256 (313)
7 3zyj_A Leucine-rich repeat-con 99.9 1.3E-25 4.5E-30 205.1 16.9 220 1-229 67-297 (440)
8 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-25 8.5E-30 191.7 13.4 198 2-229 36-243 (285)
9 3v47_A TOLL-like receptor 5B a 99.9 3.6E-24 1.2E-28 196.1 16.5 82 147-228 322-412 (455)
10 4fcg_A Uncharacterized protein 99.9 5.5E-25 1.9E-29 193.4 10.5 193 1-206 84-295 (328)
11 4fcg_A Uncharacterized protein 99.9 1.3E-24 4.4E-29 191.0 11.1 199 20-225 79-291 (328)
12 2o6q_A Variable lymphocyte rec 99.9 1.5E-23 5E-28 179.2 16.4 195 1-228 19-222 (270)
13 2z62_A TOLL-like receptor 4, v 99.9 7.7E-24 2.6E-28 181.5 14.0 199 1-228 31-241 (276)
14 2id5_A Lingo-1, leucine rich r 99.9 7.4E-24 2.5E-28 195.3 13.8 225 1-228 59-337 (477)
15 3vq2_A TLR4, TOLL-like recepto 99.9 8.2E-24 2.8E-28 200.5 13.7 216 2-229 332-563 (606)
16 2z66_A Variable lymphocyte rec 99.9 1.6E-23 5.3E-28 182.2 14.2 218 1-228 31-265 (306)
17 2z80_A TOLL-like receptor 2, v 99.9 2.2E-24 7.7E-29 191.3 8.1 217 1-228 55-318 (353)
18 3t6q_A CD180 antigen; protein- 99.9 1.4E-23 4.9E-28 198.9 13.2 224 1-228 304-564 (606)
19 4g8a_A TOLL-like receptor 4; l 99.9 2.4E-23 8.3E-28 197.7 14.4 106 1-109 55-160 (635)
20 1p9a_G Platelet glycoprotein I 99.9 9.4E-23 3.2E-27 176.1 16.0 191 1-228 13-212 (290)
21 1ozn_A Reticulon 4 receptor; N 99.9 9.1E-24 3.1E-28 181.8 9.2 196 1-226 59-263 (285)
22 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-22 3.8E-27 178.9 15.4 211 1-223 57-276 (332)
23 4eco_A Uncharacterized protein 99.9 8.9E-24 3E-28 201.4 8.4 209 2-222 85-413 (636)
24 4eco_A Uncharacterized protein 99.9 7.5E-23 2.6E-27 195.0 14.8 209 2-226 357-602 (636)
25 1xku_A Decorin; proteoglycan, 99.9 3.7E-22 1.3E-26 175.4 17.6 211 1-223 55-275 (330)
26 1wwl_A Monocyte differentiatio 99.9 9E-24 3.1E-28 184.3 7.1 192 2-223 99-308 (312)
27 3m19_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 172.9 12.3 170 1-203 17-194 (251)
28 1ziw_A TOLL-like receptor 3; i 99.9 2E-22 6.8E-27 193.5 14.9 219 1-229 384-627 (680)
29 3oja_B Anopheles plasmodium-re 99.9 7.7E-22 2.6E-26 186.8 16.8 106 1-109 78-183 (597)
30 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.7E-27 177.3 10.0 195 1-224 94-307 (310)
31 3v47_A TOLL-like receptor 5B a 99.9 1E-21 3.4E-26 179.8 16.6 105 1-107 33-139 (455)
32 3rfs_A Internalin B, repeat mo 99.9 2E-21 6.8E-26 166.2 16.4 178 1-228 44-222 (272)
33 3o6n_A APL1; leucine-rich repe 99.9 1.7E-21 5.9E-26 174.9 16.7 105 1-108 72-176 (390)
34 2o6q_A Variable lymphocyte rec 99.9 1.7E-21 5.6E-26 166.5 15.7 175 1-205 40-222 (270)
35 1xku_A Decorin; proteoglycan, 99.9 1.5E-21 5.2E-26 171.4 15.5 210 1-225 79-307 (330)
36 4ecn_A Leucine-rich repeat pro 99.9 1.5E-22 5E-27 197.7 9.0 211 2-222 327-655 (876)
37 2ft3_A Biglycan; proteoglycan, 99.9 2.8E-21 9.6E-26 169.9 16.4 209 1-225 81-308 (332)
38 3oja_B Anopheles plasmodium-re 99.9 1.3E-21 4.4E-26 185.3 13.9 218 1-227 102-361 (597)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-21 3.4E-26 184.7 12.0 197 1-229 279-515 (562)
40 3oja_A Leucine-rich immune mol 99.9 7.5E-22 2.6E-26 182.3 10.9 195 1-227 37-253 (487)
41 2id5_A Lingo-1, leucine rich r 99.9 2.5E-21 8.5E-26 178.4 13.6 212 1-222 35-259 (477)
42 2xwt_C Thyrotropin receptor; s 99.9 1.8E-21 6.2E-26 163.2 11.1 188 1-222 34-237 (239)
43 2v9t_B SLIT homolog 2 protein 99.9 4.8E-21 1.7E-25 158.7 13.3 101 1-107 14-114 (220)
44 2z63_A TOLL-like receptor 4, v 99.9 2.7E-21 9.4E-26 181.7 13.4 181 19-229 344-536 (570)
45 3zyi_A Leucine-rich repeat-con 99.9 1.3E-20 4.4E-25 172.6 16.7 194 1-204 102-306 (452)
46 3zyj_A Leucine-rich repeat-con 99.9 1.3E-20 4.3E-25 172.1 16.5 193 1-203 91-294 (440)
47 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-21 7.3E-26 180.7 11.4 197 1-229 250-486 (520)
48 4ecn_A Leucine-rich repeat pro 99.9 9E-21 3.1E-25 185.1 16.3 207 2-224 577-840 (876)
49 3rfs_A Internalin B, repeat mo 99.8 2.8E-21 9.5E-26 165.3 11.1 157 1-205 66-222 (272)
50 3o6n_A APL1; leucine-rich repe 99.8 6.2E-21 2.1E-25 171.3 13.5 101 1-107 96-196 (390)
51 3o53_A Protein LRIM1, AGAP0063 99.8 2.3E-21 7.7E-26 169.5 10.2 197 1-227 37-253 (317)
52 2z66_A Variable lymphocyte rec 99.8 8.9E-21 3E-25 164.7 13.6 195 1-205 55-265 (306)
53 3j0a_A TOLL-like receptor 5; m 99.8 7.2E-21 2.5E-25 186.9 14.6 108 1-108 51-159 (844)
54 3t6q_A CD180 antigen; protein- 99.8 1.1E-20 3.7E-25 179.0 14.5 214 1-223 257-488 (606)
55 2z62_A TOLL-like receptor 4, v 99.8 1.5E-20 5E-25 161.0 13.9 176 1-207 55-243 (276)
56 3e6j_A Variable lymphocyte rec 99.8 2.3E-20 7.8E-25 155.5 14.5 154 2-205 23-176 (229)
57 1p9a_G Platelet glycoprotein I 99.8 1.8E-20 6.2E-25 161.7 14.1 170 1-203 34-210 (290)
58 1ziw_A TOLL-like receptor 3; i 99.8 1.6E-20 5.6E-25 180.2 14.8 106 1-109 28-133 (680)
59 2z7x_B TOLL-like receptor 1, v 99.8 2.5E-20 8.6E-25 173.4 15.0 103 1-109 24-127 (520)
60 2z81_A CD282 antigen, TOLL-lik 99.8 3.1E-21 1.1E-25 180.6 8.8 191 1-228 313-514 (549)
61 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-20 9.5E-25 154.1 13.5 156 1-205 14-170 (220)
62 2z81_A CD282 antigen, TOLL-lik 99.8 2.2E-21 7.4E-26 181.7 7.2 189 3-203 10-211 (549)
63 1wwl_A Monocyte differentiatio 99.8 1.2E-21 4.1E-26 170.9 4.9 193 2-223 67-286 (312)
64 2xot_A Amphoterin-induced prot 99.8 7.1E-21 2.4E-25 169.3 9.9 182 1-228 21-206 (361)
65 2o6s_A Variable lymphocyte rec 99.8 8E-21 2.7E-25 155.8 9.2 135 2-169 11-145 (208)
66 2z63_A TOLL-like receptor 4, v 99.8 4.6E-20 1.6E-24 173.3 13.7 106 1-109 31-136 (570)
67 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-19 3.6E-24 170.9 16.0 103 1-109 55-158 (562)
68 2z80_A TOLL-like receptor 2, v 99.8 1.7E-20 5.7E-25 166.3 9.6 196 1-206 79-319 (353)
69 3vq2_A TLR4, TOLL-like recepto 99.8 7E-20 2.4E-24 173.5 13.8 196 1-206 353-563 (606)
70 3m19_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 151.7 13.0 145 1-175 38-182 (251)
71 4ezg_A Putative uncharacterize 99.8 2.5E-19 8.6E-24 145.7 12.6 149 1-202 47-195 (197)
72 1w8a_A SLIT protein; signaling 99.8 7.9E-20 2.7E-24 148.1 8.5 132 1-205 11-143 (192)
73 1h6u_A Internalin H; cell adhe 99.8 2.8E-19 9.4E-24 155.6 12.4 179 1-223 44-229 (308)
74 3bz5_A Internalin-J, INLJ; leu 99.8 1.8E-18 6E-23 158.5 16.6 96 1-110 45-140 (457)
75 2o6s_A Variable lymphocyte rec 99.8 1.7E-18 5.7E-23 141.9 14.8 154 1-207 31-184 (208)
76 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 145.0 13.4 134 1-165 43-176 (229)
77 2v70_A SLIT-2, SLIT homolog 2 99.8 6.6E-19 2.3E-23 145.8 11.6 135 1-165 35-170 (220)
78 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.3E-23 144.1 13.0 133 1-203 35-167 (220)
79 2xot_A Amphoterin-induced prot 99.8 4.6E-19 1.6E-23 157.6 10.6 159 1-202 42-203 (361)
80 4fmz_A Internalin; leucine ric 99.8 1E-18 3.4E-23 154.3 12.1 202 1-223 135-345 (347)
81 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.7E-23 165.7 13.0 101 3-109 36-136 (635)
82 4glp_A Monocyte differentiatio 99.8 5.2E-19 1.8E-23 154.0 9.8 175 1-202 120-308 (310)
83 3bz5_A Internalin-J, INLJ; leu 99.8 4.1E-18 1.4E-22 156.1 15.8 95 1-110 67-161 (457)
84 3o53_A Protein LRIM1, AGAP0063 99.8 4.7E-19 1.6E-23 154.7 8.9 202 2-223 14-226 (317)
85 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.8E-23 154.5 11.0 191 2-206 13-219 (350)
86 1h6u_A Internalin H; cell adhe 99.8 4.3E-18 1.5E-22 148.1 13.0 159 1-202 66-231 (308)
87 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.9E-23 161.1 9.7 190 13-223 21-226 (487)
88 1o6v_A Internalin A; bacterial 99.8 4.6E-18 1.6E-22 156.2 13.5 202 1-225 180-389 (466)
89 1h6t_A Internalin B; cell adhe 99.8 4.6E-18 1.6E-22 146.7 11.8 159 1-202 49-214 (291)
90 2xwt_C Thyrotropin receptor; s 99.7 9E-18 3.1E-22 140.6 10.7 163 1-198 58-236 (239)
91 1jl5_A Outer protein YOPM; leu 99.7 3.4E-17 1.2E-21 149.8 14.8 74 2-85 135-208 (454)
92 1xeu_A Internalin C; cellular 99.7 3.8E-18 1.3E-22 145.1 7.9 92 4-107 25-116 (263)
93 3cvr_A Invasion plasmid antige 99.7 1.8E-17 6E-22 155.1 12.5 175 1-206 62-248 (571)
94 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6.2E-22 156.4 12.0 160 1-203 46-212 (605)
95 2wfh_A SLIT homolog 2 protein 99.7 5.5E-17 1.9E-21 131.4 13.1 130 1-204 13-142 (193)
96 4fmz_A Internalin; leucine ric 99.7 2.9E-17 9.8E-22 144.9 12.4 180 1-201 158-346 (347)
97 1xeu_A Internalin C; cellular 99.7 4.9E-17 1.7E-21 138.1 12.9 144 1-203 44-187 (263)
98 2ell_A Acidic leucine-rich nuc 99.7 9.1E-18 3.1E-22 132.8 7.4 142 20-206 22-164 (168)
99 1w8a_A SLIT protein; signaling 99.7 2.1E-17 7.1E-22 133.8 9.7 88 1-90 32-120 (192)
100 1o6v_A Internalin A; bacterial 99.7 6.2E-17 2.1E-21 148.6 14.0 207 1-223 49-277 (466)
101 1jl5_A Outer protein YOPM; leu 99.7 3.9E-18 1.3E-22 156.1 5.4 179 1-202 14-209 (454)
102 1h6t_A Internalin B; cell adhe 99.7 4.6E-17 1.6E-21 140.4 11.5 133 1-175 71-203 (291)
103 2o6r_A Variable lymphocyte rec 99.7 9.3E-17 3.2E-21 128.1 12.3 131 2-205 11-141 (177)
104 2ast_B S-phase kinase-associat 99.7 2.6E-18 8.9E-23 150.9 3.1 189 1-198 73-282 (336)
105 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-16 5.2E-21 150.4 13.9 52 1-60 64-115 (622)
106 2ca6_A RAN GTPase-activating p 99.7 9.5E-19 3.3E-23 156.9 -1.2 221 1-226 35-318 (386)
107 4b8c_D Glucose-repressible alc 99.7 1.1E-17 3.8E-22 161.4 4.8 124 13-170 215-338 (727)
108 2je0_A Acidic leucine-rich nuc 99.7 5.5E-17 1.9E-21 125.7 6.4 133 21-197 16-149 (149)
109 2ca6_A RAN GTPase-activating p 99.7 3.9E-18 1.3E-22 152.9 -0.5 206 13-222 23-285 (386)
110 4ezg_A Putative uncharacterize 99.7 7.4E-17 2.5E-21 131.0 7.1 153 18-223 40-193 (197)
111 3goz_A Leucine-rich repeat-con 99.7 3.1E-18 1.1E-22 152.3 -1.4 105 2-108 2-120 (362)
112 3g06_A SSPH2 (leucine-rich rep 99.7 7.8E-16 2.7E-20 145.6 14.5 89 1-107 43-131 (622)
113 4b8c_D Glucose-repressible alc 99.7 2E-17 7E-22 159.5 3.7 172 1-205 227-408 (727)
114 1m9s_A Internalin B; cell inva 99.7 4.8E-16 1.6E-20 146.7 12.8 133 1-175 68-200 (605)
115 2ast_B S-phase kinase-associat 99.7 2.3E-17 7.9E-22 144.8 3.5 199 1-207 96-312 (336)
116 2wfh_A SLIT homolog 2 protein 99.7 4.8E-16 1.6E-20 125.9 10.2 105 1-109 34-138 (193)
117 1dce_A Protein (RAB geranylger 99.6 3.3E-18 1.1E-22 160.5 -6.1 154 2-207 353-552 (567)
118 3goz_A Leucine-rich repeat-con 99.6 6.7E-17 2.3E-21 143.7 2.1 217 1-223 25-296 (362)
119 2ell_A Acidic leucine-rich nuc 99.6 9E-16 3.1E-20 121.2 8.4 133 44-223 22-159 (168)
120 1a9n_A U2A', U2A'; complex (nu 99.6 1E-15 3.5E-20 121.9 8.7 142 16-202 13-154 (176)
121 3g39_A Variable lymphocyte rec 99.6 2E-15 7E-20 119.6 9.4 103 1-109 12-114 (170)
122 2o6r_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 119.7 10.0 107 1-110 31-137 (177)
123 2r9u_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 119.1 9.3 103 1-109 15-117 (174)
124 1dce_A Protein (RAB geranylger 99.6 4.5E-15 1.5E-19 139.2 11.3 125 24-195 443-567 (567)
125 4ay9_X Follicle-stimulating ho 99.6 4.1E-15 1.4E-19 131.5 10.3 194 1-199 33-257 (350)
126 2je0_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 117.5 6.5 115 44-205 15-130 (149)
127 3cvr_A Invasion plasmid antige 99.6 8.1E-15 2.8E-19 137.1 10.2 157 1-188 83-254 (571)
128 1z7x_W Ribonuclease inhibitor; 99.5 1.8E-16 6.2E-21 145.0 -2.8 105 1-107 145-266 (461)
129 1a9n_A U2A', U2A'; complex (nu 99.5 6.5E-15 2.2E-19 117.3 5.1 130 1-161 22-153 (176)
130 1z7x_W Ribonuclease inhibitor; 99.5 6.9E-16 2.4E-20 141.1 -1.5 106 1-109 173-296 (461)
131 1ds9_A Outer arm dynein; leuci 99.5 1.3E-16 4.3E-21 129.8 -6.4 97 3-107 23-125 (198)
132 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.7E-21 130.2 -7.7 140 17-206 13-158 (198)
133 2ifg_A High affinity nerve gro 99.5 8.9E-14 3E-18 122.6 8.3 102 2-109 12-115 (347)
134 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 108.4 9.0 86 1-88 33-118 (170)
135 2r9u_A Variable lymphocyte rec 99.4 3.2E-13 1.1E-17 107.3 9.0 87 1-90 36-122 (174)
136 3sb4_A Hypothetical leucine ri 99.3 8.6E-12 3E-16 109.1 10.6 78 1-81 52-157 (329)
137 3un9_A NLR family member X1; l 99.2 1.6E-13 5.6E-18 122.1 -3.8 166 1-202 75-253 (372)
138 2ifg_A High affinity nerve gro 99.2 1.6E-11 5.4E-16 108.1 8.2 83 1-86 34-117 (347)
139 2p1m_B Transport inhibitor res 99.2 9.7E-13 3.3E-17 123.9 -2.7 64 20-85 103-169 (594)
140 3ogk_B Coronatine-insensitive 99.2 5.9E-12 2E-16 118.6 2.5 32 144-175 289-321 (592)
141 3sb4_A Hypothetical leucine ri 99.1 3.5E-10 1.2E-14 98.9 9.9 103 2-106 105-259 (329)
142 3ogk_B Coronatine-insensitive 99.1 2.9E-11 1E-15 113.8 2.2 60 1-60 167-234 (592)
143 2p1m_B Transport inhibitor res 98.9 1.2E-11 4.1E-16 116.4 -7.3 42 15-56 282-324 (594)
144 3un9_A NLR family member X1; l 98.9 5.9E-11 2E-15 105.5 -3.2 142 1-168 104-259 (372)
145 4fdw_A Leucine rich hypothetic 98.9 3.8E-08 1.3E-12 88.2 14.7 179 3-198 140-333 (401)
146 4fdw_A Leucine rich hypothetic 98.9 3.4E-08 1.2E-12 88.5 13.9 182 2-201 161-358 (401)
147 3rw6_A Nuclear RNA export fact 98.9 8E-10 2.7E-14 93.1 2.8 98 3-104 148-258 (267)
148 1io0_A Tropomodulin; LRR prote 98.5 1.3E-08 4.4E-13 81.3 1.1 69 15-85 29-106 (185)
149 3rw6_A Nuclear RNA export fact 98.5 8.6E-08 2.9E-12 80.7 3.8 75 1-79 173-258 (267)
150 1io0_A Tropomodulin; LRR prote 98.4 5.2E-08 1.8E-12 77.8 1.4 83 1-85 39-136 (185)
151 2ra8_A Uncharacterized protein 98.4 7.4E-08 2.5E-12 85.0 2.1 84 16-105 133-227 (362)
152 2ra8_A Uncharacterized protein 98.4 2.4E-07 8.2E-12 81.8 5.1 150 13-202 163-321 (362)
153 3e4g_A ATP synthase subunit S, 97.6 8.5E-06 2.9E-10 63.8 0.5 95 14-111 53-153 (176)
154 4gt6_A Cell surface protein; l 97.6 0.00023 7.9E-09 63.3 9.6 82 17-104 260-341 (394)
155 3e4g_A ATP synthase subunit S, 97.5 1.3E-05 4.4E-10 62.8 -0.1 80 2-83 65-150 (176)
156 4fs7_A Uncharacterized protein 97.4 0.00069 2.4E-08 60.2 9.7 60 17-80 66-125 (394)
157 4fs7_A Uncharacterized protein 97.3 0.0013 4.5E-08 58.4 10.4 84 15-106 246-329 (394)
158 3rfe_A Platelet glycoprotein I 97.3 0.00038 1.3E-08 51.7 5.6 57 25-85 11-68 (130)
159 4h09_A Hypothetical leucine ri 97.3 0.0012 4E-08 58.2 9.7 84 16-105 211-294 (379)
160 3rfe_A Platelet glycoprotein I 97.3 0.00033 1.1E-08 52.1 5.1 34 73-107 32-65 (130)
161 4gt6_A Cell surface protein; l 97.2 0.0011 3.8E-08 58.8 9.0 88 13-106 279-366 (394)
162 4h09_A Hypothetical leucine ri 97.0 0.0024 8.1E-08 56.3 8.9 86 15-105 233-318 (379)
163 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00061 2.1E-08 54.3 3.2 68 18-85 37-111 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0032 1.1E-07 50.1 2.9 82 1-84 44-138 (197)
165 2ks1_B Epidermal growth factor 88.1 0.54 1.8E-05 27.1 3.2 7 263-269 14-20 (44)
166 2ks1_B Epidermal growth factor 77.7 0.68 2.3E-05 26.7 0.7 16 265-280 12-27 (44)
167 2lz0_A Uncharacterized protein 56.5 12 0.0004 25.7 3.7 47 9-56 7-53 (100)
168 2knc_A Integrin alpha-IIB; tra 48.7 27 0.00093 20.9 3.8 12 263-274 16-27 (54)
169 2l8s_A Integrin alpha-1; trans 46.9 26 0.00088 21.0 3.5 9 264-272 14-22 (54)
170 2k9y_A Ephrin type-A receptor 40.6 5.2 0.00018 22.4 -0.2 6 265-270 18-23 (41)
171 2lz0_A Uncharacterized protein 26.3 82 0.0028 21.3 4.0 45 34-81 8-52 (100)
172 2yiu_B Cytochrome C1, heme pro 20.4 60 0.002 26.5 2.6 14 288-301 248-261 (263)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-33 Score=269.63 Aligned_cols=235 Identities=29% Similarity=0.389 Sum_probs=162.0
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
+|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+ +.+++|++|++++
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSN 523 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCS
T ss_pred EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCC
Confidence 45666666666666666666666666666666666666666666667777777777666666666 6677777777777
Q ss_pred CcccccCChhhhhCcccchhccCcccccccccccCCCC------------------------------------------
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQ------------------------------------------ 119 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------------------------ 119 (305)
|+++|.+|.. +..+++|+.|++++|.+.+..+.....
T Consensus 524 N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 524 NSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 7777677754 667777777777765443221110000
Q ss_pred ---------------------cCCCccc-cccccccccccCcc---cccccccccccEEEccCCccccccchhhcCCCCc
Q 045166 120 ---------------------VSSNVLG-TYDYSRTMNSKGRV---MTYNKIPNILAGIILSNNRFDGAIPASIANLKGL 174 (305)
Q Consensus 120 ---------------------~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L 174 (305)
+|..+.. ..+..++++.+.+. +.....++.|+.|||++|+++|.+|..+++++.|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 0000000 01122333333333 2233447788899999999999999999888888
Q ss_pred e--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcCCCCCCCCCCCCC
Q 045166 175 Q--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCDSGEAPT 240 (305)
Q Consensus 175 ~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~~~~~c~~~~~~~ 240 (305)
+ ++|.+|..+.++++|++||+++|+++|.||+..+|.++....|.|||.+||.|+. .|.......
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~ 755 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADG 755 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC---
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCC
Confidence 7 8899999999999999999999999999999999999999999999999999987 897665433
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=5.8e-31 Score=230.08 Aligned_cols=227 Identities=26% Similarity=0.338 Sum_probs=161.2
Q ss_pred EEEcccCcccc--ccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEe
Q 045166 2 FYLRNENTFLQ--RIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIID 78 (305)
Q Consensus 2 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~ 78 (305)
.|+|++|.+++ .+|..|.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+ .++++|++|+
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~ 131 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTLD 131 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEEE
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCCEEe
Confidence 57777777777 7777777777788888774 77777777777777777777777777777777766 6777777777
Q ss_pred CCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcC------------------CCccccccccccccccCc-
Q 045166 79 LSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVS------------------SNVLGTYDYSRTMNSKGR- 139 (305)
Q Consensus 79 Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~- 139 (305)
+++|.+++.+|.. +..+++|++|++++|...+..+...+..+ ..+....+..+++..+.+
T Consensus 132 Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred CCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence 7777777777754 77777777777777544322211111111 111111122222332322
Q ss_pred --ccccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCC
Q 045166 140 --VMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQ 209 (305)
Q Consensus 140 --~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 209 (305)
....+..+++|+.|+|++|++++.+|. +..+++|+ +++.+|..+..+++|++|++++|+++|.+|....
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 223344577888888888888866655 66555555 7778999999999999999999999999999988
Q ss_pred CCccCCCccCCCCCCCCcCCCCCC
Q 045166 210 FATFDNTSFDGNSGLCGKPLSKGC 233 (305)
Q Consensus 210 ~~~l~~~~~~gNp~lc~~~~~~~c 233 (305)
+.++...++.|||.+||.|.. .|
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ccccChHHhcCCCCccCCCCC-CC
Confidence 999999999999999998775 46
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.1e-27 Score=233.39 Aligned_cols=222 Identities=17% Similarity=0.178 Sum_probs=146.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|.+.+..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..|..+ .++++|++|+++
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~ 346 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQ 346 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECC
Confidence 468999999998888889999999999999999998778888999999999999999988778777 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccccccccc-----------CCCCcCCCc----------------------cc-
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-----------PYGQVSSNV----------------------LG- 126 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~----------------------~~- 126 (305)
+|++. .++...|..+++|+.|++++|........ ....+|... ..
T Consensus 347 ~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 347 KNHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp SCCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred CCCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence 99998 55555688889999998887643221000 000011000 00
Q ss_pred cccccccccccCcc---------------------------------cccccccccccEEEccCCccccccchhhcCCCC
Q 045166 127 TYDYSRTMNSKGRV---------------------------------MTYNKIPNILAGIILSNNRFDGAIPASIANLKG 173 (305)
Q Consensus 127 ~~~~~~~~~~~~~~---------------------------------~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~ 173 (305)
..+..+++..+.+. ...+..+++|+.|||++|++++..|..+..+++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 01112222222221 111233455666666666666555555555555
Q ss_pred ce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCCcCC
Q 045166 174 LQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 174 L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~~~~ 229 (305)
|+ +++..|..+. ++|++|||++|++++.+|. .+..+..++++|||+.|+|+.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCccccccc
Confidence 44 2332333332 5666666666666666664 355777888999999997754
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=6.1e-27 Score=227.84 Aligned_cols=221 Identities=24% Similarity=0.287 Sum_probs=155.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++||+++|++++.+|..++++++|++|++++|.+++.+|..++.+++|++|++++|++++.+|..+ ..+++|++|+++
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~ 498 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLS 498 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECC
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEcc
Confidence 356777777777777777777777777777777777777777777777777777777777777766 677788888888
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCC-----------------CCcCCCccccccc-ccc---------
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPY-----------------GQVSSNVLGTYDY-SRT--------- 133 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-~~~--------- 133 (305)
+|++++.+|.. ++.+++|+.|++++|...+..+... +.+|..+...... ...
T Consensus 499 ~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 499 NNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp SSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred CCccCCcCChH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 88888777755 7778888888887765443221111 1223222111000 000
Q ss_pred ----------------------------------------ccccCcccccccccccccEEEccCCccccccchhhcCCCC
Q 045166 134 ----------------------------------------MNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKG 173 (305)
Q Consensus 134 ----------------------------------------~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~ 173 (305)
....+........+++|+.|||++|+++|.+|.++++++.
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 0000111112334678999999999999999999999988
Q ss_pred ce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCC
Q 045166 174 LQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGL 224 (305)
Q Consensus 174 L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~l 224 (305)
|+ ++|.+|..++++++|++|||++|+++|.+|.. ..+..+..+++++|+..
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 87 88999999999999999999999999999975 45667788888888643
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.7e-26 Score=207.31 Aligned_cols=220 Identities=20% Similarity=0.116 Sum_probs=176.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+ ..+++|++|+++
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 155 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELWLR 155 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCEEECC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCEEECC
Confidence 579999999998889999999999999999999999777899999999999999999998666667 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccC-CCCcCCCccccccccccccccCccc-ccccccccccEEEccCC
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP-YGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNN 158 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N 158 (305)
+|+++ .+|...|..+++|+.|++++|+.+...... ...++ .+..+++..+.+.. .....+++|+.|||++|
T Consensus 156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF------NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN 228 (452)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT------TCCEEECTTSCCSSCCCCTTCTTCCEEECTTS
T ss_pred CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC------CCCEEECCCCcccccccccccccccEEECcCC
Confidence 99999 777777999999999999986554432210 11110 12223333333221 12344789999999999
Q ss_pred ccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166 159 RFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 159 ~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~ 229 (305)
++++..|..|.++++|+ +.+..|..|..+++|++|+|++|++++..+.. ..+..+..+++++||+.|+|..
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99988899999888887 56677888999999999999999999665543 4567788889999999998864
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.3e-26 Score=200.87 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=139.1
Q ss_pred CCCCEEeccCccccc--CcchhhcCCCCCCEEEccc-ccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166 22 SKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRS-NIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA 98 (305)
Q Consensus 22 ~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~ 98 (305)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+ +.+++|++|++++|++++.+|.. +..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPDF-LSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCGG-GGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCHH-HhCCCC
Confidence 689999999999998 8999999999999999995 99999999888 89999999999999999899966 899999
Q ss_pred chhccCcccccccccccCCCCcCCCcccc-ccccccccccCcccc---cccccc-cccEEEccCCccccccchhhcCCCC
Q 045166 99 MKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVMT---YNKIPN-ILAGIILSNNRFDGAIPASIANLKG 173 (305)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-~L~~LdLs~N~l~g~~p~~~~~L~~ 173 (305)
|++|++++|...+.. |..+... .+..+++..+.+... ....+. .|+.|++++|++++.+|..+..+.
T Consensus 127 L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 127 LVTLDFSYNALSGTL-------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp CCEEECCSSEEESCC-------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred CCEEeCCCCccCCcC-------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 999999997654322 2111111 223333333433311 122243 777888888888777777777654
Q ss_pred ce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166 174 LQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 174 L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~ 223 (305)
|+ +.+.+|..+..+++|++|++++|++++.+|....+.++..+++++|..
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc
Confidence 43 555667777777777777777777776666655555666666666643
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=205.09 Aligned_cols=220 Identities=20% Similarity=0.129 Sum_probs=174.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..+ ..+++|++|+++
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 144 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELWLR 144 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCCEEECC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCceeeCC
Confidence 479999999998888999999999999999999999777889999999999999999997666667 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccccccccc-CCCCcCCCccccccccccccccCccc-ccccccccccEEEccCC
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-PYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNN 158 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N 158 (305)
+|.++ .+|...|..+++|+.|++++|+.+..... ....++ .+..+++..+.+.. .....+++|+.|||++|
T Consensus 145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS------NLRYLNLAMCNLREIPNLTPLIKLDELDLSGN 217 (440)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS------SCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc------ccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence 99999 67766799999999999998654443211 011111 12223333332221 12344789999999999
Q ss_pred ccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166 159 RFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 159 ~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~ 229 (305)
++++..|..|.++++|+ +.+..|..|..+++|++|+|++|++++..+.. ..+..+..+++++||+.|+|..
T Consensus 218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99988899999888887 56677888999999999999999999665543 4567788889999999998843
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.5e-25 Score=191.65 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=134.7
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccc-ceeeeCCCCCCCCCCCccEEeCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNI-FYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+|++++|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|. ++...|..+ ..+++|++|+++
T Consensus 36 ~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l~ 113 (285)
T 1ozn_A 36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHLD 113 (285)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEECT
T ss_pred EEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEECC
Confidence 56666666665555566666666666666666666556666666666666666665 554445555 566666666666
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|.+++ ++...+..+++|++|++++|.... .....+..+++|+.|+|++|++
T Consensus 114 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 114 RCGLQE-LGPGLFRGLAALQYLYLQDNALQA---------------------------LPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TSCCCC-CCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCE-ECHhHhhCCcCCCEEECCCCcccc---------------------------cCHhHhccCCCccEEECCCCcc
Confidence 666663 332336666666666666543211 1122233477899999999999
Q ss_pred ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCC-CCCCCccCCCccCCCCCCCCcCC
Q 045166 161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~~~l~~~~~~gNp~lc~~~~ 229 (305)
++..+..+..+++|+ +.+..|..+..+++|++|++++|++++..+. ...+..+..+++++||+.|+++.
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 865555677777766 5566788899999999999999999975554 35677888889999999998764
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=3.6e-24 Score=196.11 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=49.1
Q ss_pred cccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCc
Q 045166 147 PNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTS 217 (305)
Q Consensus 147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~ 217 (305)
+++|+.|+|++|++++..|..+.++++|+ +.+..|..+..+++|++|++++|++++..+.. ..+..+..++
T Consensus 322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence 34444444444444444444444444443 44455666777777777777777777544433 3556677777
Q ss_pred cCCCCCCCCcC
Q 045166 218 FDGNSGLCGKP 228 (305)
Q Consensus 218 ~~gNp~lc~~~ 228 (305)
+++||..|++|
T Consensus 402 l~~N~l~~~~~ 412 (455)
T 3v47_A 402 LHTNPWDCSCP 412 (455)
T ss_dssp CCSSCBCCCTT
T ss_pred ccCCCcccCCC
Confidence 88888888776
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=5.5e-25 Score=193.36 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=126.8
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|+++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+|..+ +.+++|++|+++
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L~L~ 158 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRELSIR 158 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEEECC
Confidence 46899999998 78888889999999999999998 58988999999999999999998 678777 889999999999
Q ss_pred CCcccccCChhh--------hhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCccc--cccccccc
Q 045166 81 DNRFTGKLPSNS--------FLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVM--TYNKIPNI 149 (305)
Q Consensus 81 ~N~l~g~lp~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~ 149 (305)
+|++.+.+|..+ +.++++|++|++++|... .+|..+... .+..+++..+.+.. .....+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~ 230 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--------SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--------CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--------cchHhhcCCCCCCEEEccCCCCCcCchhhccCCC
Confidence 988888888652 224889999998886432 122211111 11112222221111 01223455
Q ss_pred ccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166 150 LAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 150 L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 206 (305)
|+.|+|++|++.+.+|..++.+++|+ +.+.+|..+.++++|++|++++|++.|.+|+
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 55555555555555555555544444 3344555555555555555555555555554
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.3e-24 Score=191.02 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=147.4
Q ss_pred cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccc
Q 045166 20 NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAM 99 (305)
Q Consensus 20 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L 99 (305)
...+++.|++++|.++. +|..++.+++|++|+|++|.++ .+|..+ +.+++|++|++++|.++ .+|.. +..+++|
T Consensus 79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~--~~l~~L~~L~Ls~n~l~-~lp~~-l~~l~~L 152 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTM--QQFAGLETLTLARNPLR-ALPAS-IASLNRL 152 (328)
T ss_dssp TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCG--GGGTTCSEEEEESCCCC-CCCGG-GGGCTTC
T ss_pred cccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHH--hccCCCCEEECCCCccc-cCcHH-HhcCcCC
Confidence 35899999999999995 8999999999999999999998 788888 89999999999999999 89976 8999999
Q ss_pred hhccCcccccccccccCCCC--cCCCcc-ccccccccccccCcc--cccccccccccEEEccCCccccccchhhcCCCCc
Q 045166 100 KIVNTSALRYLQDVLFPYGQ--VSSNVL-GTYDYSRTMNSKGRV--MTYNKIPNILAGIILSNNRFDGAIPASIANLKGL 174 (305)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L 174 (305)
++|++++|+..+..+...+. ++..+. -..+..+++..+.+. +.....+++|+.|+|++|+++ .+|..+..+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence 99999997665433211110 000000 012223333333322 122344778888888888888 577778777777
Q ss_pred e--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCC
Q 045166 175 Q--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLC 225 (305)
Q Consensus 175 ~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc 225 (305)
+ +.+.+|..+..+++|++|++++|++.+.+|.. ..+..+..+++++|+..-
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 6 55678888888888888888888888888864 355667777788877654
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.5e-23 Score=179.25 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=144.8
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+++++++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++...+..+ .++++|++|+++
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~ 93 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWVT 93 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEECC
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEEECC
Confidence 36888888888 5676554 678899999999888555678888999999999998886555555 678889999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|+.|++++|..... ....+..+++|+.|+|++|++
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL---------------------------PPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCC-cCCHhHcccccCCCEEECCCCccCee---------------------------CHHHhCcCcCCCEEECCCCcC
Confidence 99988 66666678888899888887543221 111223367788888888888
Q ss_pred ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166 161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
++..+..+..+++|+ +.+..+..|..+++|++|++++|++++..+.. ..+..+..+++++||+.|+|.
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 854444566666665 33334456888999999999999999655542 456778888999999999875
No 13
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=7.7e-24 Score=181.46 Aligned_cols=199 Identities=16% Similarity=0.095 Sum_probs=149.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ .++++|++|+++
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~ 108 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV 108 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECT
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEEECC
Confidence 478899999887777788889999999999999888666678888999999999999888776777 788899999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|.+. .++...+..+++|++|++++|...... + ......+++|+.|++++|++
T Consensus 109 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------l--------------------~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK------L--------------------PEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCC------C--------------------CGGGGGCTTCCEEECCSSCC
T ss_pred CCCcc-ccCchhcccCCCCCEEECcCCccceec------C--------------------chhhccCCCCCEEECCCCCC
Confidence 99888 455444788888998888875432200 0 11223378899999999999
Q ss_pred ccccchhhcCCCCce-------eee----cCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166 161 DGAIPASIANLKGLQ-------FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~-------l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
++..+..+..+..|+ +++ .+|.......+|++|++++|++++..+.. ..+.++..+++++||+.|+|+
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 976666666544332 221 23333344558999999999999665543 457788889999999999875
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=7.4e-24 Score=195.31 Aligned_cols=225 Identities=18% Similarity=0.124 Sum_probs=150.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..+ .++++|++|+++
T Consensus 59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l~ 136 (477)
T 2id5_A 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVG 136 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEEEC
T ss_pred CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHc--cccccCCEEECC
Confidence 468888888887778888888888888888888887444457778888888888888877766666 677777777777
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccc------------------------cCCCCc----------------
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVL------------------------FPYGQV---------------- 120 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~------------------------~~~~~~---------------- 120 (305)
+|.+++..| ..|..+++|+.|++++|....... .....+
T Consensus 137 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 137 DNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp CTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE
T ss_pred CCccceeCh-hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc
Confidence 777774333 336666666666666543221100 000000
Q ss_pred -CCCccc-cccccccccccCc---ccccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCC
Q 045166 121 -SSNVLG-TYDYSRTMNSKGR---VMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAEL 187 (305)
Q Consensus 121 -~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l 187 (305)
+..... ..+..+++..+.+ +......+++|+.|||++|++++..+..+.++.+|+ +.+..|..|..+
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 000000 0111122222222 112234477889999999999877677777777766 556678889999
Q ss_pred CCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166 188 TFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 188 ~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
++|++|++++|++++..+.. ..+..+..+++++||+.|+|+
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99999999999999655543 456778888999999999874
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=8.2e-24 Score=200.49 Aligned_cols=216 Identities=15% Similarity=0.019 Sum_probs=137.5
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccC--cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDT--FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
+|++++|...+.+ .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..+ ..+++|++|++
T Consensus 332 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~--~~l~~L~~L~l 406 (606)
T 3vq2_A 332 SLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANF--MGLEELQHLDF 406 (606)
T ss_dssp EEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCC--TTCTTCCEEEC
T ss_pred eeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhc--cCCCCCCeeEC
Confidence 5666666444333 455666666666666666653 25566666666666666666654 44455 56666666666
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc----cccccccccccEEEc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV----MTYNKIPNILAGIIL 155 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~LdL 155 (305)
++|++.+..|...+..+++|+.|++++|..........+..+ .+..+++..+.+. ......+++|+.|||
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT------TCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC------CCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 666666444423356666666666666543321111111100 1122222222222 223445789999999
Q ss_pred cCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCC-ccCCCccCCCCCCC
Q 045166 156 SNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFA-TFDNTSFDGNSGLC 225 (305)
Q Consensus 156 s~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~-~l~~~~~~gNp~lc 225 (305)
++|++++..|..+.++++|+ +++.+|..+..+++|++||+++|+++ .+|.. ..+. .+..++++|||+.|
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 99999988888898888877 56677899999999999999999999 56654 3343 47788899999999
Q ss_pred CcCC
Q 045166 226 GKPL 229 (305)
Q Consensus 226 ~~~~ 229 (305)
+|+.
T Consensus 560 ~c~~ 563 (606)
T 3vq2_A 560 ICEH 563 (606)
T ss_dssp SSTT
T ss_pred CCcc
Confidence 8865
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-23 Score=182.17 Aligned_cols=218 Identities=16% Similarity=0.069 Sum_probs=163.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCccccc--CcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEe
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~ 78 (305)
++|+|++|+++...+..|.++++|++|++++|.++. ..|..+..+++|++|++++|.++. +|..+ ..+++|++|+
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~--~~l~~L~~L~ 107 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF--LGLEQLEHLD 107 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEE--ETCTTCCEEE
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-Chhhc--CCCCCCCEEE
Confidence 479999999985555568999999999999999984 236778889999999999999985 56666 7899999999
Q ss_pred CCCCcccccCCh-hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc----cccccccccccEE
Q 045166 79 LSDNRFTGKLPS-NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV----MTYNKIPNILAGI 153 (305)
Q Consensus 79 Ls~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~~L 153 (305)
+++|+++ .++. ..+..+++|+.|++++|.............+ .+..+.+..+.+. ......+++|+.|
T Consensus 108 l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS------SLEVLKMAGNSFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT------TCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCc------CCCEEECCCCccccccchhHHhhCcCCCEE
Confidence 9999998 4543 4588899999999998654332111111111 1223333333332 2334557899999
Q ss_pred EccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCC-CccCCCccCCCCC
Q 045166 154 ILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQF-ATFDNTSFDGNSG 223 (305)
Q Consensus 154 dLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~l~~~~~~gNp~ 223 (305)
|+++|++++..|..+.++++|+ +.+..+..+..+++|++|++++|++++..|.. ..+ ..+..++++||+.
T Consensus 181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 9999999987788888877776 44455567889999999999999999988865 334 4788888999999
Q ss_pred CCCcC
Q 045166 224 LCGKP 228 (305)
Q Consensus 224 lc~~~ 228 (305)
.|+|+
T Consensus 261 ~~~c~ 265 (306)
T 2z66_A 261 ACTCE 265 (306)
T ss_dssp ECSGG
T ss_pred ecccC
Confidence 99764
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=191.30 Aligned_cols=217 Identities=16% Similarity=0.176 Sum_probs=138.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..+ .++++|++|+++
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~ 132 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLSSLTFLNLL 132 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH--TTCTTCSEEECT
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh--CCCccCCEEECC
Confidence 467788888776555577778888888888888877666677778888888888887775433335 677788888888
Q ss_pred CCcccccCCh-hhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCcc---cccccccccccEEEc
Q 045166 81 DNRFTGKLPS-NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRV---MTYNKIPNILAGIIL 155 (305)
Q Consensus 81 ~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~L~~LdL 155 (305)
+|+++ .+|. ..+..+++|+.|++++|+.+.... +..+... .+..+++..+.+. ......+++|+.|++
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCccccccC------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 88877 6665 447777788888777754332211 0001000 1222223322222 222233455666666
Q ss_pred cCCccccccchhh-cCCCCce---ee--------------------------------e----cCCccccCCCCCCEEec
Q 045166 156 SNNRFDGAIPASI-ANLKGLQ---FS--------------------------------G----RIPQQLAELTFLAFFNV 195 (305)
Q Consensus 156 s~N~l~g~~p~~~-~~L~~L~---l~--------------------------------g----~ip~~l~~l~~L~~L~L 195 (305)
++|+++ .+|..+ ..+++|+ ++ + .+|..+..+++|++|++
T Consensus 206 ~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp ECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 666654 333322 2233332 11 1 35667888999999999
Q ss_pred cCCcceecCCCC--CCCCccCCCccCCCCCCCCcC
Q 045166 196 SDNYLTGPIPQG--KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 196 s~N~l~g~ip~~--~~~~~l~~~~~~gNp~lc~~~ 228 (305)
++|+++ .+|.. ..+.++..+++++||..|.++
T Consensus 285 s~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 285 SRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 999999 56654 467888889999999999875
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.4e-23 Score=198.85 Aligned_cols=224 Identities=14% Similarity=0.071 Sum_probs=142.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcch-hhcCCCCCCEEEcccccceeee--CCCCCCCCCCCccEE
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPS-WLGTLPKLNVLILRSNIFYGII--EEPRTSCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~~~l~~L~~L 77 (305)
++|++++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. |..+ ..+++|++|
T Consensus 304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L 381 (606)
T 3t6q_A 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL--RNLSHLQSL 381 (606)
T ss_dssp CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT--TTCTTCCEE
T ss_pred CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc--ccCCCCCEE
Confidence 4677777777766677777777777777777777655544 3666777777777777776654 4445 666667777
Q ss_pred eCCCCcccccCChhhhhCcccchhccCcccccccccccC-CCC-----------------cCCCcccc-ccccccccccC
Q 045166 78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP-YGQ-----------------VSSNVLGT-YDYSRTMNSKG 138 (305)
Q Consensus 78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~-----------------~~~~~~~~-~~~~~~~~~~~ 138 (305)
++++|.+.+..| ..+..+++|+.|++++|......... ... .+..+... .+..+++..+.
T Consensus 382 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 382 NLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp ECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred ECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 777776664444 33666666666666664332211000 000 01111110 12223333333
Q ss_pred ccc------ccccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecC
Q 045166 139 RVM------TYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPI 204 (305)
Q Consensus 139 ~~~------~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 204 (305)
+.. .....+++|+.|++++|++++..|..+.++++|+ +++..|..+.++++| +|++++|++++.+
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence 322 2234477888888888888877788888777776 566778888888888 8899999888776
Q ss_pred CCC-CCCCccCCCccCCCCCCCCcC
Q 045166 205 PQG-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 205 p~~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
|.. ..+..+..++++|||+.|+|+
T Consensus 540 ~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 540 PSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGHHHHHTSSEEECTTCCEECSGG
T ss_pred HhhcccCCCCCEEeCCCCCccccCC
Confidence 653 345667788899999999875
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=2.4e-23 Score=197.67 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=95.2
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|||++|+|++..|.+|.++++|++|+|++|+|++..|++|.++++|++|+|++|++++..+..| .++++|++|+++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f--~~L~~L~~L~Ls 132 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV 132 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG--TTCTTCCEEECT
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh--cCCCCCCEEECC
Confidence 579999999998778899999999999999999999667789999999999999999998666677 899999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|+++ .+|...|+++++|++|++++|..
T Consensus 133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 133 ETNLA-SLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCcCC-CCChhhhhcCcccCeeccccCcc
Confidence 99999 67766689999999999998654
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=9.4e-23 Score=176.07 Aligned_cols=191 Identities=19% Similarity=0.155 Sum_probs=134.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+++++++|+++ .+|..+. ++++.|++++|.+++..|..+..+++|++|+|++|.+++..+ . ..+++|++|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--D--GTLPVLGTLDLS 85 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--C--SCCTTCCEEECC
T ss_pred cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--C--CCCCcCCEEECC
Confidence 35788888887 5665543 678888888888887667778888888888888888876433 2 567888888888
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|.. +..+++|+.|++++|..... ....+..+++|+.|+|++|++
T Consensus 86 ~N~l~-~l~~~-~~~l~~L~~L~l~~N~l~~l---------------------------~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 86 HNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSL---------------------------PLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp SSCCS-SCCCC-TTTCTTCCEEECCSSCCCCC---------------------------CSSTTTTCTTCCEEECTTSCC
T ss_pred CCcCC-cCchh-hccCCCCCEEECCCCcCccc---------------------------CHHHHcCCCCCCEEECCCCCC
Confidence 88887 77754 77788888888877533211 111122356677777777777
Q ss_pred ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166 161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
++..+..+..+++|+ +++..+..+..+++|++|+|++|+++ .+|.. .....+..+.+.|||+.|+|.
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 755444555555554 33333345678999999999999999 45543 455677888899999999874
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=9.1e-24 Score=181.85 Aligned_cols=196 Identities=18% Similarity=0.169 Sum_probs=154.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcc-cccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-ISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|++++|.+++..|..|.++++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+ ..+++|++|++
T Consensus 59 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l 136 (285)
T 1ozn_A 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYL 136 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEEC
T ss_pred CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEEC
Confidence 579999999998889999999999999999997 887668889999999999999999998778777 88999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
++|.++ .+|...+..+++|+.|++++|..... ....+..+++|+.|++++|+
T Consensus 137 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV---------------------------PERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSC
T ss_pred CCCccc-ccCHhHhccCCCccEEECCCCccccc---------------------------CHHHhcCccccCEEECCCCc
Confidence 999999 66666689999999999998643221 11112236788999999999
Q ss_pred cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCCC
Q 045166 160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCG 226 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc~ 226 (305)
+++..|..+.++++|+ +.+..+..+..+++|++|++++|++++..+.......+.......+...|.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~ 263 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccC
Confidence 9888788888777776 444444568999999999999999997665432222333334445555454
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1.1e-22 Score=178.87 Aligned_cols=211 Identities=17% Similarity=0.130 Sum_probs=138.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..|..|.++++|++|++++|++++..|..+..+++|++|++++|.++ .+|..+ . ++|++|+++
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~--~--~~L~~L~l~ 131 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--P--SSLVELRIH 131 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSC--C--TTCCEEECC
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccc--c--ccCCEEECC
Confidence 47999999999877889999999999999999999977889999999999999999998 466655 3 789999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|+.|++++|...... ..+..+....+..+.+..+.+..-.....++|+.|++++|++
T Consensus 132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG-----FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG-----SCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred CCccC-ccCHhHhCCCccCCEEECCCCccccCC-----CCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence 99998 677677899999999999986543210 011111111122222222222221111234566666666666
Q ss_pred ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCC
Q 045166 161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG 223 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~ 223 (305)
++..|..+.++++|+ +.+..|..+..+++|++|++++|+++ .+|.. ..+..+..+++++|+.
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 655555555544444 33334445666666666666666666 44442 3344455555555543
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=8.9e-24 Score=201.42 Aligned_cols=209 Identities=17% Similarity=0.159 Sum_probs=151.0
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCc-------------------------------------------------
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGIN------------------------------------------------- 32 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N------------------------------------------------- 32 (305)
.|+|++|.+.|.+|++++++++|++|+|++|
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 5899999999999999999999999999888
Q ss_pred -----------------------------ccccCcchhhcCCCCCCEEEcccccceee-----------------eCCCC
Q 045166 33 -----------------------------QISDTFPSWLGTLPKLNVLILRSNIFYGI-----------------IEEPR 66 (305)
Q Consensus 33 -----------------------------~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~ 66 (305)
++++ +|..++++++|++|+|++|.+++. +|..+
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence 4456 888899999999999999999985 88888
Q ss_pred CCC--CCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccc-------ccccccccccc
Q 045166 67 TSC--GFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG-------TYDYSRTMNSK 137 (305)
Q Consensus 67 ~~~--~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 137 (305)
+ ++++|++|++++|++.|.+|.. ++++++|++|++++|..+... .+|..+.. ..+..+.+..+
T Consensus 244 --~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~-----~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 244 --KWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGE-----QLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp --CGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHH-----HHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred --hhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccc-----cchHHHHhhhccccCCCCCEEECCCC
Confidence 6 8999999999999999999965 889999999999987622210 11221111 12223333333
Q ss_pred Ccc--cc--cccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCC-CCEEeccCCcceecC
Q 045166 138 GRV--MT--YNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTF-LAFFNVSDNYLTGPI 204 (305)
Q Consensus 138 ~~~--~~--~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~i 204 (305)
.+. +. ....+++|+.|++++|+++|.+| .++++++|+ +. .+|..+..+++ |++|++++|+++ .+
T Consensus 316 ~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SC
T ss_pred cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-cc
Confidence 332 11 23346778888888888888888 776655555 33 67777888887 888888888887 66
Q ss_pred CCCCC---CCccCCCccCCCC
Q 045166 205 PQGKQ---FATFDNTSFDGNS 222 (305)
Q Consensus 205 p~~~~---~~~l~~~~~~gNp 222 (305)
|.... +..+..+++++|.
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSC
T ss_pred chhhhhcccCccCEEECcCCc
Confidence 65422 2245555666664
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=7.5e-23 Score=195.02 Aligned_cols=209 Identities=16% Similarity=0.169 Sum_probs=133.4
Q ss_pred EEEcccCccccccChhhhcCCC-CCEEeccCcccccCcchhhcCCC--CCCEEEcccccceeeeCCCCCCC-------CC
Q 045166 2 FYLRNENTFLQRIPRSLINCSK-LEFLGLGINQISDTFPSWLGTLP--KLNVLILRSNIFYGIIEEPRTSC-------GF 71 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~~-------~l 71 (305)
+|++++|+++ .+|..+.++++ |++|++++|.++ .+|..+..++ +|++|++++|.+++.+|..+ . .+
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~~~~~~~~~ 432 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--DPLDPTPFKG 432 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS--CTTCSSCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh--cccccccccC
Confidence 4555555555 55555555555 666666666655 3555554433 56666666666655555544 3 45
Q ss_pred CCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc---------ccccccccccCcc--
Q 045166 72 SKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT---------YDYSRTMNSKGRV-- 140 (305)
Q Consensus 72 ~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-- 140 (305)
++|++|++++|+++ .+|...+..+++|+.|++++|... .+|...... .+..+++..+.+.
T Consensus 433 ~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~--------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 503 (636)
T 4eco_A 433 INVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT--------EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503 (636)
T ss_dssp CCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS--------BCCSSSSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred CCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC--------CcCHHHhccccccccccCCccEEECcCCcCCcc
Confidence 56677777777776 666665666677777777765432 122222111 2233334333332
Q ss_pred -cccc-cccccccEEEccCCccccccchhhcCCCCce---e-----------eecCCccccCCCCCCEEeccCCcceecC
Q 045166 141 -MTYN-KIPNILAGIILSNNRFDGAIPASIANLKGLQ---F-----------SGRIPQQLAELTFLAFFNVSDNYLTGPI 204 (305)
Q Consensus 141 -~~~~-~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l-----------~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 204 (305)
..+. ..+++|+.|||++|++++ +|..+.++++|+ + .+.+|..+.++++|++|+|++|++ +.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 2222 257889999999999996 888888777776 3 567888999999999999999999 688
Q ss_pred CCCCCCCccCCCccCCCCCCCC
Q 045166 205 PQGKQFATFDNTSFDGNSGLCG 226 (305)
Q Consensus 205 p~~~~~~~l~~~~~~gNp~lc~ 226 (305)
|.... ..+..+++++|+..|-
T Consensus 582 p~~~~-~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 582 NEKIT-PNISVLDIKDNPNISI 602 (636)
T ss_dssp CSCCC-TTCCEEECCSCTTCEE
T ss_pred CHhHh-CcCCEEECcCCCCccc
Confidence 87633 7788888999988773
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=3.7e-22 Score=175.36 Aligned_cols=211 Identities=20% Similarity=0.174 Sum_probs=151.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.++. +|..+ .++|++|+++
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~----~~~L~~L~l~ 129 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM----PKTLQELRVH 129 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC----CTTCCEEECC
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhh----cccccEEECC
Confidence 479999999997777789999999999999999998778899999999999999999984 66655 2789999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccCcccccccccccccEEEccCCc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
+|.++ .++...+..+++|+.|++++|...... ..+..+... .+..+.+..+.+........++|+.|++++|+
T Consensus 130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG-----IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203 (330)
T ss_dssp SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG-----BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSC
T ss_pred CCccc-ccCHhHhcCCccccEEECCCCcCCccC-----cChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCc
Confidence 99999 666666899999999999886542210 011111111 12222333333322222224678888888888
Q ss_pred cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCC
Q 045166 160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG 223 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~ 223 (305)
+++..|..+..+++|+ +.+..+..+..+++|++|++++|+++ .+|.. ..+..+..+++++|+.
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 8877777777776666 44455567778888888888888887 55543 4556677777777754
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=9e-24 Score=184.33 Aligned_cols=192 Identities=23% Similarity=0.240 Sum_probs=104.0
Q ss_pred EEEcccCccccccChhh--hcCCCCCEEeccCcccccCcchhhcCC-----CCCCEEEcccccceeeeCCCCCCCCCCCc
Q 045166 2 FYLRNENTFLQRIPRSL--INCSKLEFLGLGINQISDTFPSWLGTL-----PKLNVLILRSNIFYGIIEEPRTSCGFSKL 74 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~~~l~~L 74 (305)
+|+|++|++++.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..+ +.+++|
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~L 175 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPAL 175 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSSC
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCCC
Confidence 45555555555555544 5555555555555555553 5444444 555555555555555444444 555555
Q ss_pred cEEeCCCCcccccC--Chh-hhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc
Q 045166 75 RIIDLSDNRFTGKL--PSN-SFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA 151 (305)
Q Consensus 75 ~~L~Ls~N~l~g~l--p~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 151 (305)
++||+++|++.+.+ |.. ++..+++|++|++++|...... .........+++|+
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------------~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------------------------GVCSALAAARVQLQ 231 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------------------------HHHHHHHHTTCCCS
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------------------------HHHHHHHhcCCCCC
Confidence 55555555554331 211 1245555555555553221000 00011112356778
Q ss_pred EEEccCCccccccc-hhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166 152 GIILSNNRFDGAIP-ASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 152 ~LdLs~N~l~g~~p-~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~ 223 (305)
.|||++|++++.+| ..+..+++|+ +++ .+|..+. ++|++||+++|++++. |....+..+..+++++|+.
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 88888888876554 3333333333 221 5666555 6788888888888765 5556667777777788764
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=7.7e-23 Score=172.89 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=114.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+++|++++.++ .+|..+. ++++.|++++|.+++..|..+..+++|++|+|++|.+++..|..+ ..+++|++|+++
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 91 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLA 91 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECT
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEECC
Confidence 35788888887 6666554 688889999998888777778888889999999988888776667 788889999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|++|++++|.... +....+..+++|+.|+|++|++
T Consensus 92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS---------------------------LPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccc-ccChhHhcccCCCCEEEcCCCcCCC---------------------------cChhHhccCCcccEEECcCCcC
Confidence 98888 5665667888888888888753321 1111222367788888888888
Q ss_pred ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceec
Q 045166 161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 203 (305)
++..|..+..+++|+ +.+..+..+..+++|++|++++|++++.
T Consensus 144 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 844333443333332 2222223444455555555555555443
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2e-22 Score=193.50 Aligned_cols=219 Identities=16% Similarity=0.103 Sum_probs=158.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcc-hhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|++++|++++..|.+|..+++|++|++++|.+++.+| ..+.++++|++|++++|++++..+..+ ..+++|+.|++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L~l 461 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRLML 461 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEEEC
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccchh
Confidence 367888889988888899999999999999999987666 578889999999999999888777777 67788888888
Q ss_pred CCCccc--ccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-----------ccccc
Q 045166 80 SDNRFT--GKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-----------TYNKI 146 (305)
Q Consensus 80 s~N~l~--g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 146 (305)
++|.+. +.+|.. +..+++|+.|++++|............++ .+..+++..+.+.. .....
T Consensus 462 ~~n~l~~~~~~p~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~ 534 (680)
T 1ziw_A 462 RRVALKNVDSSPSP-FQPLRNLTILDLSNNNIANINDDMLEGLE------KLEILDLQHNNLARLWKHANPGGPIYFLKG 534 (680)
T ss_dssp TTSCCBCTTCSSCT-TTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCGGGGSTTSTTSCCCTTTT
T ss_pred ccccccccccCCcc-cccCCCCCEEECCCCCCCcCChhhhcccc------ccCEEeCCCCCccccchhhccCCcchhhcC
Confidence 888775 456644 77788888888877543321110011000 12222333332221 12455
Q ss_pred cccccEEEccCCccccccch-hhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCC--CCCccCC
Q 045166 147 PNILAGIILSNNRFDGAIPA-SIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGK--QFATFDN 215 (305)
Q Consensus 147 ~~~L~~LdLs~N~l~g~~p~-~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~--~~~~l~~ 215 (305)
+++|+.|||++|+++ .+|. .|.++++|+ +++..+..|..+++|++|++++|++++..|... .+..+..
T Consensus 535 l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 535 LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE
T ss_pred CCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE
Confidence 789999999999999 5665 577777776 444445567899999999999999998766532 4677888
Q ss_pred CccCCCCCCCCcCC
Q 045166 216 TSFDGNSGLCGKPL 229 (305)
Q Consensus 216 ~~~~gNp~lc~~~~ 229 (305)
++++|||+.|+|+.
T Consensus 614 l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 614 LDMRFNPFDCTCES 627 (680)
T ss_dssp EECTTCCCCBCCCC
T ss_pred EEccCCCcccCCcc
Confidence 89999999999874
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7.7e-22 Score=186.79 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=80.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..+ +.+++|++|+++
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~Ls 155 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS 155 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh--ccCCCCCEEEee
Confidence 467888888887777788888888888888888887666677888888888888888876544445 678888888888
Q ss_pred CCcccccCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|.+++..| ..+..+++|+.|++++|..
T Consensus 156 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 156 NNNLERIED-DTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp SSCCCBCCT-TTTTTCTTCCEEECTTSCC
T ss_pred CCcCCCCCh-hhhhcCCcCcEEECcCCCC
Confidence 888885444 4477888888888877543
No 30
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-22 Score=177.29 Aligned_cols=195 Identities=20% Similarity=0.137 Sum_probs=143.6
Q ss_pred CEEEcccCccccccChhh--hcCCCCCEEeccCcccccCcc----hhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCc
Q 045166 1 MFYLRNENTFLQRIPRSL--INCSKLEFLGLGINQISDTFP----SWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKL 74 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L 74 (305)
++|++++|++++..|..+ ..+++|++|++++|.+++..| ..+..+++|++|++++|.+++..|..+ ..+++|
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L 171 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAFPAL 171 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCCTTC
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccCCCC
Confidence 578999999999999888 889999999999999987655 345578999999999999988777777 889999
Q ss_pred cEEeCCCCccccc--CC-hhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc
Q 045166 75 RIIDLSDNRFTGK--LP-SNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA 151 (305)
Q Consensus 75 ~~L~Ls~N~l~g~--lp-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 151 (305)
++||+++|++.+. ++ ..++..+++|++|++++|....... ........+++|+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~------------------------~~~~l~~~l~~L~ 227 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG------------------------VCAALAAAGVQPH 227 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH------------------------HHHHHHHHTCCCS
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH------------------------HHHHHHhcCCCCC
Confidence 9999999998642 22 2334688899999998864321000 0001122367899
Q ss_pred EEEccCCccccccchhhcCC---CCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCC
Q 045166 152 GIILSNNRFDGAIPASIANL---KGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGN 221 (305)
Q Consensus 152 ~LdLs~N~l~g~~p~~~~~L---~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gN 221 (305)
+|||++|++++.+|..+..+ ++|+ +++ .+|..+. ++|++|||++|++++. |....+..+..+++++|
T Consensus 228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGN 304 (310)
T ss_dssp SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSST
T ss_pred EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCC
Confidence 99999999997777766554 2443 222 5666654 7899999999999863 43456677888888888
Q ss_pred CCC
Q 045166 222 SGL 224 (305)
Q Consensus 222 p~l 224 (305)
+..
T Consensus 305 ~l~ 307 (310)
T 4glp_A 305 PFL 307 (310)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=1e-21 Score=179.81 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=59.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCc-chhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTF-PSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|||++|++++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|+|++|.+++..|..+ +++++|++|++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L 110 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLEVLTL 110 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT--TTCTTCCEEEC
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc--cCcccCCEEeC
Confidence 35667777766666666666666666666666665433 3455666666666666666665555555 55555555555
Q ss_pred CCCcccccCCh-hhhhCcccchhccCccc
Q 045166 80 SDNRFTGKLPS-NSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 80 s~N~l~g~lp~-~~~~~l~~L~~L~l~~~ 107 (305)
++|++++.+|. ..+..+++|++|++++|
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred CCCCCCccccCcccccCcccCCEEECCCC
Confidence 55555532221 12444445555544443
No 32
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2e-21 Score=166.18 Aligned_cols=178 Identities=18% Similarity=0.194 Sum_probs=125.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.|++++|.++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 44 ~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 117 (272)
T 3rfs_A 44 DQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLV 117 (272)
T ss_dssp CEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECT
T ss_pred eeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHh--cCCcCCCEEECC
Confidence 46888888887 343 57888999999999999887 43 68888999999999999887666666 788899999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|++|++++|.... ........+++|+.|++++|++
T Consensus 118 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS---------------------------LPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCC-ccCHHHhccCCCCCEEECCCCccCc---------------------------cCHHHhccCccCCEEECCCCCc
Confidence 99998 5555657888889998888753321 1111223367888888888888
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
++..|.. +..+++|++|++++|++++..|.. ..+..+..+++++|++.|.++
T Consensus 170 ~~~~~~~----------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 170 QSLPEGV----------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCCTTT----------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CccCHHH----------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 8444333 455566666666666666555432 345555666666666666543
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.7e-21 Score=174.94 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=63.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.++...+..+ ..+++|++|+++
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~ 149 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS 149 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh--cCCCCCcEEECC
Confidence 356666666665555566666666666666666666555556666666666666666664333334 556666666666
Q ss_pred CCcccccCChhhhhCcccchhccCcccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALR 108 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~ 108 (305)
+|.++ .++...+..+++|+.|++++|.
T Consensus 150 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 150 NNNLE-RIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp SSCCC-BCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccC-ccChhhccCCCCCCEEECCCCc
Confidence 66666 3333346666666666666643
No 34
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.7e-21 Score=166.48 Aligned_cols=175 Identities=14% Similarity=0.100 Sum_probs=139.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 117 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLD 117 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECC
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECC
Confidence 479999999997777799999999999999999998555567899999999999999998666666 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|+.|++++|..... ....+..+++|+.|+|++|++
T Consensus 118 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 118 RNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL---------------------------PKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred CCccC-eeCHHHhCcCcCCCEEECCCCcCCcc---------------------------CHhHccCCcccceeEecCCcC
Confidence 99999 56656689999999999998643221 111223367788888888888
Q ss_pred ccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCC
Q 045166 161 DGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 205 (305)
++..+..+.++++|+ +.+..+..+..+++|+.|++++|++.+..+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 865555666666665 333344568889999999999999987654
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.5e-21 Score=171.41 Aligned_cols=210 Identities=17% Similarity=0.177 Sum_probs=160.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|++++|+++. +|..+. ++|++|++++|.+++..+..+ .++++|++|+++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 153 (330)
T 1xku_A 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF--NGLNQMIVVELG 153 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECC
T ss_pred CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHh--cCCccccEEECC
Confidence 579999999998889999999999999999999986 776654 799999999999998666667 789999999999
Q ss_pred CCcccc--cCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc---cccccccccccEEEc
Q 045166 81 DNRFTG--KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGIIL 155 (305)
Q Consensus 81 ~N~l~g--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~LdL 155 (305)
+|.+.. ..+ ..+..+++|+.|++++|.... +|.... ..+..+++..+.+. ......+++|+.|+|
T Consensus 154 ~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~--------l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 154 TNPLKSSGIEN-GAFQGMKKLSYIRIADTNITT--------IPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp SSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCS--------CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred CCcCCccCcCh-hhccCCCCcCEEECCCCcccc--------CCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 999962 444 448999999999999865432 222111 12233333333332 334455889999999
Q ss_pred cCCccccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCC-------CCCccCCCccCCC
Q 045166 156 SNNRFDGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGK-------QFATFDNTSFDGN 221 (305)
Q Consensus 156 s~N~l~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~-------~~~~l~~~~~~gN 221 (305)
++|++++..+..+..+++|+ +++ .+|..+..+++|++|++++|++++..+... ....+..+++.||
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence 99999987777888777776 332 688899999999999999999996554432 2345666778899
Q ss_pred CCCC
Q 045166 222 SGLC 225 (305)
Q Consensus 222 p~lc 225 (305)
|..+
T Consensus 304 ~~~~ 307 (330)
T 1xku_A 304 PVQY 307 (330)
T ss_dssp SSCG
T ss_pred cccc
Confidence 8765
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.5e-22 Score=197.68 Aligned_cols=211 Identities=14% Similarity=0.092 Sum_probs=146.2
Q ss_pred EEEcccCccccccChhhhcCCCCCEEec-cCcccccC-------------------------------------------
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGL-GINQISDT------------------------------------------- 37 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~~N~l~~~------------------------------------------- 37 (305)
.|+|++|.+.|.+|++|+++++|++|+| ++|.++|.
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 5899999999999999999999999999 77765544
Q ss_pred ---------------------------------cchhhcCCCCCCEEEccccccee-----------------eeCCCCC
Q 045166 38 ---------------------------------FPSWLGTLPKLNVLILRSNIFYG-----------------IIEEPRT 67 (305)
Q Consensus 38 ---------------------------------~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~ 67 (305)
+|..++++++|++|+|++|.+++ .+|..+.
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 88889999999999999999998 3888872
Q ss_pred CCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc--------ccccccccccCc
Q 045166 68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT--------YDYSRTMNSKGR 139 (305)
Q Consensus 68 ~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 139 (305)
+.++++|++|+|++|++.|.+|.. +.++++|+.|++++|..+... .+|..+... .+..+.+..+.+
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~-----~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAA-----QLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHH-----HHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred hccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccc-----cchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 128999999999999999999965 899999999999987623210 111111110 122333333333
Q ss_pred c--cc--cccccccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCC-CCEEeccCCcceecCCC
Q 045166 140 V--MT--YNKIPNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTF-LAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 140 ~--~~--~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~ip~ 206 (305)
. +. ....+++|+.|+|++|+++ .+| .++++++|+ +. .+|..+..+++ |++|++++|+++ .+|.
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 2 11 2234667777777777777 677 666665555 33 56766777777 777777777777 5664
Q ss_pred CCCC---CccCCCccCCCC
Q 045166 207 GKQF---ATFDNTSFDGNS 222 (305)
Q Consensus 207 ~~~~---~~l~~~~~~gNp 222 (305)
.... ..+..+++++|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CCCTTCSSCEEEEECCSSC
T ss_pred hhhccccCCCCEEECcCCc
Confidence 3221 124445555553
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.8e-21 Score=169.90 Aligned_cols=209 Identities=15% Similarity=0.145 Sum_probs=159.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..|..|.++++|++|++++|+++. +|..+. ++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 81 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~ 155 (332)
T 2ft3_A 81 YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMG 155 (332)
T ss_dssp CEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG--SSCSSCCEEECC
T ss_pred cEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh--CCCccCCEEECC
Confidence 579999999998889999999999999999999986 777665 899999999999987655556 889999999999
Q ss_pred CCcccc--cCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCc---ccccccccccccEEEc
Q 045166 81 DNRFTG--KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGIIL 155 (305)
Q Consensus 81 ~N~l~g--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~LdL 155 (305)
+|.++. ..| ..+..+ +|+.|++++|.... +|..+. ..+..+++..+.+ .......+++|+.|+|
T Consensus 156 ~n~l~~~~~~~-~~~~~l-~L~~L~l~~n~l~~--------l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 156 GNPLENSGFEP-GAFDGL-KLNYLRISEAKLTG--------IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp SCCCBGGGSCT-TSSCSC-CCSCCBCCSSBCSS--------CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CCccccCCCCc-ccccCC-ccCEEECcCCCCCc--------cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 999962 344 447777 99999999865432 122111 1222333333333 2334455889999999
Q ss_pred cCCccccccchhhcCCCCce---ee----ecCCccccCCCCCCEEeccCCcceecCCCCC-------CCCccCCCccCCC
Q 045166 156 SNNRFDGAIPASIANLKGLQ---FS----GRIPQQLAELTFLAFFNVSDNYLTGPIPQGK-------QFATFDNTSFDGN 221 (305)
Q Consensus 156 s~N~l~g~~p~~~~~L~~L~---l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~-------~~~~l~~~~~~gN 221 (305)
++|++++..|..+..+++|+ ++ ..+|..+..+++|++|++++|++++..+... .+..+..+++.||
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence 99999987777888877776 22 2788899999999999999999996554421 1345667788999
Q ss_pred CCCC
Q 045166 222 SGLC 225 (305)
Q Consensus 222 p~lc 225 (305)
|..+
T Consensus 305 ~~~~ 308 (332)
T 2ft3_A 305 PVPY 308 (332)
T ss_dssp SSCG
T ss_pred cccc
Confidence 8764
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-21 Score=185.31 Aligned_cols=218 Identities=16% Similarity=0.099 Sum_probs=140.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..+ +.+++|++|+++
T Consensus 102 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~ 179 (597)
T 3oja_B 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLS 179 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECT
T ss_pred CEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCCcCcEEECc
Confidence 579999999998888899999999999999999998555557899999999999999999888788 899999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccccccccc-----------CCCCcCCCccccccccccccccCccc-ccccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-----------PYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPN 148 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 148 (305)
+|.++ .++ +..+++|+.|++++|........ ....++.... ..+..+.+..+.+.. .....++
T Consensus 180 ~N~l~-~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~~l~~l~ 254 (597)
T 3oja_B 180 SNRLT-HVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYP 254 (597)
T ss_dssp TSCCS-BCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCGGGGGCT
T ss_pred CCCCC-CcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC-CCCCEEECCCCCCCCChhhccCC
Confidence 99999 455 44567777777766432210000 0000000000 011111222222111 1223355
Q ss_pred cccEEEccCCccccccchhhcCCCCce--------eee----------------------cCCccccCCCCCCEEeccCC
Q 045166 149 ILAGIILSNNRFDGAIPASIANLKGLQ--------FSG----------------------RIPQQLAELTFLAFFNVSDN 198 (305)
Q Consensus 149 ~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g----------------------~ip~~l~~l~~L~~L~Ls~N 198 (305)
+|+.|||++|.+++.+|..++.+++|+ +++ .+|..+..+++|++|+|++|
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC
Confidence 666666666666666566665555544 111 34445555556666666666
Q ss_pred cceecCCCCCCCCccCCCccCCCCCCCCc
Q 045166 199 YLTGPIPQGKQFATFDNTSFDGNSGLCGK 227 (305)
Q Consensus 199 ~l~g~ip~~~~~~~l~~~~~~gNp~lc~~ 227 (305)
++++.. ...+..+..++++|||+.|.+
T Consensus 335 ~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 335 SIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 665432 234566777788888888754
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1e-21 Score=184.70 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=129.5
Q ss_pred CEEEcccCccccccChhh-----hcCCC--------------------------CCEEeccCcccccCcchhhcCCCCCC
Q 045166 1 MFYLRNENTFLQRIPRSL-----INCSK--------------------------LEFLGLGINQISDTFPSWLGTLPKLN 49 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~-----~~l~~--------------------------L~~L~L~~N~l~~~~p~~~~~l~~L~ 49 (305)
++|++++|+++|.+|..+ ..++. |++|++++|.+.. .+ ....+++|+
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~l~~L~ 356 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MV-CPPSPSSFT 356 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-cc-CccCCCCce
Confidence 368899999988888766 33333 4445555554432 11 115677788
Q ss_pred EEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh--hhhhCcccchhccCcccccccccccCCCCcCCCcccc
Q 045166 50 VLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS--NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127 (305)
Q Consensus 50 ~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (305)
+|++++|.+++.+|..+ .++++|++|++++|+++ .++. ..+..+++|+.|++++|...... |.
T Consensus 357 ~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~-------~~----- 421 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHA-------YD----- 421 (562)
T ss_dssp EEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCC-------SS-----
T ss_pred EEECCCCccccchhhhh--cccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCcc-------Ch-----
Confidence 88888888877677777 77788888888888887 3432 23677778888887775432211 10
Q ss_pred ccccccccccCcccccccccccccEEEccCCccccccchhhc-CCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166 128 YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA-NLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~-~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
.....+++|+.|++++|++++.+|..+. +|..|.+++ .+|..+..+++|++|++++|+++
T Consensus 422 --------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 422 --------------RTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK- 486 (562)
T ss_dssp --------------CCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-
T ss_pred --------------hhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-
Confidence 1112245666666666666666665552 444444322 56777778999999999999999
Q ss_pred cCCCC--CCCCccCCCccCCCCCCCCcCC
Q 045166 203 PIPQG--KQFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 203 ~ip~~--~~~~~l~~~~~~gNp~lc~~~~ 229 (305)
.+|.. ..+..+..+++++||+.|+|+.
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 56653 5667788888999999998753
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7.5e-22 Score=182.34 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=138.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCC--------------
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR-------------- 66 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-------------- 66 (305)
++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+..-
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC
Confidence 479999999998888999999999999999999998555 8899999999999999887443210
Q ss_pred CCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166 67 TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI 146 (305)
Q Consensus 67 ~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
....+++|+.|++++|.+++..|.. ++.+++|+.|++++|...+..+ . .+...
T Consensus 115 ~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-------~-------------------~l~~~ 167 (487)
T 3oja_A 115 SCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF-------A-------------------ELAAS 167 (487)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEG-------G-------------------GGGGG
T ss_pred CccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcCh-------H-------------------HHhhh
Confidence 0124678999999999999655644 8899999999999865433111 0 11112
Q ss_pred cccccEEEccCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCcc
Q 045166 147 PNILAGIILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSF 218 (305)
Q Consensus 147 ~~~L~~LdLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~ 218 (305)
+++|+.|||++|.|++. |.. ..+++|+ +++ +|+.+..+++|+.|+|++|++++..+....+..+..+++
T Consensus 168 l~~L~~L~Ls~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCcccEEecCCCccccc-ccc-ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 45566666666666533 221 1233332 222 344577888899999999998874444455677778888
Q ss_pred CCCCCCCCc
Q 045166 219 DGNSGLCGK 227 (305)
Q Consensus 219 ~gNp~lc~~ 227 (305)
+||+..|++
T Consensus 245 ~~N~l~c~~ 253 (487)
T 3oja_A 245 RGNGFHCGT 253 (487)
T ss_dssp TTCCBCHHH
T ss_pred CCCCCcCcc
Confidence 889888764
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=178.38 Aligned_cols=212 Identities=17% Similarity=0.076 Sum_probs=151.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|||++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..+ .++++|++|+++
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls 112 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF--TGLSNLTKLDIS 112 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS--TTCTTCCEEECT
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc--cCCCCCCEEECC
Confidence 479999999998888899999999999999999999778899999999999999999987555556 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccC---cccccccccccccEEEccC
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG---RVMTYNKIPNILAGIILSN 157 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~LdLs~ 157 (305)
+|++++..| ..+..+++|+.|++++|............++ .+..+.+..+. ........+++|+.|+|++
T Consensus 113 ~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 113 ENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLN------SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp TSCCCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCT------TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCccccCCh-hHccccccCCEEECCCCccceeChhhccCCC------CCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 999995555 4589999999999988654322111111111 12222222222 2223344577788888888
Q ss_pred CccccccchhhcCCCCce---e-----eecCCccccCCCCCCEEeccCCcceecCCC--CCCCCccCCCccCCCC
Q 045166 158 NRFDGAIPASIANLKGLQ---F-----SGRIPQQLAELTFLAFFNVSDNYLTGPIPQ--GKQFATFDNTSFDGNS 222 (305)
Q Consensus 158 N~l~g~~p~~~~~L~~L~---l-----~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~~~l~~~~~~gNp 222 (305)
|.+++..+..+..+++|+ + .+.+|.......+|++|++++|++++ +|. ...+..+..+++++|.
T Consensus 186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSC
T ss_pred CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCc
Confidence 888866666777666665 3 23455555556688888888888873 442 2455667777777775
No 42
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.8e-21 Score=163.17 Aligned_cols=188 Identities=11% Similarity=0.094 Sum_probs=132.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcc-cccCcchhhcCCCCCCEEEccc-ccceeeeCCCCCCCCCCCccEEe
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-ISDTFPSWLGTLPKLNVLILRS-NIFYGIIEEPRTSCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~l~~L~~L~ 78 (305)
++|++++|++++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..+ .++++|++|+
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~ 111 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLG 111 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEe
Confidence 468899999987777788899999999999996 8775555788899999999998 88887665666 7888999999
Q ss_pred CCCCcccccCChhhhhCcccch---hccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc-EEE
Q 045166 79 LSDNRFTGKLPSNSFLCWNAMK---IVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA-GII 154 (305)
Q Consensus 79 Ls~N~l~g~lp~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~Ld 154 (305)
+++|+++ .+|. +..+++|+ .|++++|..+... ....+..+++|+ .|+
T Consensus 112 l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i--------------------------~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 112 IFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSI--------------------------PVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEE--------------------------CTTTTTTTBSSEEEEE
T ss_pred CCCCCCc-cccc--cccccccccccEEECCCCcchhhc--------------------------CcccccchhcceeEEE
Confidence 9999998 5774 77778777 8888775222211 111122356677 777
Q ss_pred ccCCccccccchhhcCCCCce---e------eecCCccccCC-CCCCEEeccCCcceecCCCCCCCCccCCCccCCCC
Q 045166 155 LSNNRFDGAIPASIANLKGLQ---F------SGRIPQQLAEL-TFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS 222 (305)
Q Consensus 155 Ls~N~l~g~~p~~~~~L~~L~---l------~g~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp 222 (305)
+++|+++ .+|.......+|+ + .+..+..|..+ ++|++|++++|++++ +|.. .+..++.+.+.++.
T Consensus 163 l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC-
T ss_pred cCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCcc
Confidence 7777777 5555433223333 2 22234567788 889999999999984 4543 56677666666554
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=4.8e-21 Score=158.67 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=83.8
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.+++++|.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..+ .++++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence 35788999988 6776654 789999999999998666688999999999999999998888888 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
+|+++ .+|...|..+++|+.|++++|
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 89 GNKIT-ELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CCcCC-ccCHhHccCCCCCCEEECCCC
Confidence 99999 788776666666666666554
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=181.67 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=113.2
Q ss_pred hcCCCCCEEeccCcccccCc--chhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166 19 INCSKLEFLGLGINQISDTF--PSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW 96 (305)
Q Consensus 19 ~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l 96 (305)
..+++|++|++++|.+++.. |..+..+++|++|++++|.+++..+. + ..+++|++|++++|.+.+..|...+..+
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F--LGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E--ETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c--cccCCCCEEEccCCccccccchhhhhcC
Confidence 34445555555555554421 34444555555555555555443222 3 4455555555555555533332334455
Q ss_pred ccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc-cccchhhcCCCCce
Q 045166 97 NAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD-GAIPASIANLKGLQ 175 (305)
Q Consensus 97 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~-g~~p~~~~~L~~L~ 175 (305)
++|+.|++++|.... ........+++|+.|++++|+++ +.+|..+..+++|+
T Consensus 421 ~~L~~L~l~~n~l~~---------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 421 RNLIYLDISHTHTRV---------------------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TTCCEEECTTSCCEE---------------------------CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCEEeCcCCcccc---------------------------cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 555555555432211 11122334778899999999987 57888888777776
Q ss_pred --------eeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcCC
Q 045166 176 --------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 176 --------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~~ 229 (305)
+++..|..+..+++|++|++++|++++.+|.. ..+..+..+++++||..|+++.
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 56677888999999999999999999877754 4677888889999999998764
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.3e-20 Score=172.56 Aligned_cols=194 Identities=15% Similarity=0.007 Sum_probs=153.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+ ..+++|++|+++
T Consensus 102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~ 179 (452)
T 3zyi_A 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLG 179 (452)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCC
Confidence 579999999998888999999999999999999998666678999999999999999997666667 899999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCc---ccccccccccccEEEccC
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGIILSN 157 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~LdLs~ 157 (305)
+|+..+.+|...|..+++|+.|++++|..... |.......+..+++..+.+ ....+..+++|+.|+|++
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred CCCCccccChhhccCCCCCCEEECCCCccccc--------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 95555588887799999999999999754321 1100011233334444433 334455688999999999
Q ss_pred CccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecC
Q 045166 158 NRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPI 204 (305)
Q Consensus 158 N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 204 (305)
|++++..|..+..+++|+ +++..+..+..+++|+.|+|++|++....
T Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 999988888888887776 45555667889999999999999987643
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=172.06 Aligned_cols=193 Identities=13% Similarity=0.033 Sum_probs=153.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+ ..+++|++|+++
T Consensus 91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~ 168 (440)
T 3zyj_A 91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLG 168 (440)
T ss_dssp CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCC
Confidence 579999999998888999999999999999999998666679999999999999999998766677 899999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcc---cccccccccccEEEccC
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGIILSN 157 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~LdLs~ 157 (305)
+|+..+.++...|.++++|+.|++++|.... +|.......+..+++..+.+. ...+..+++|+.|+|++
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCSS--------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCcc--------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 9655558887779999999999999975432 111111112333444444333 33455688999999999
Q ss_pred CccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceec
Q 045166 158 NRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 158 N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 203 (305)
|++++..|..|.++++|+ +++..+..+..+++|+.|+|++|++...
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 999988888888887776 5555666788999999999999999754
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=180.69 Aligned_cols=197 Identities=17% Similarity=0.232 Sum_probs=133.6
Q ss_pred CEEEcccCccccccChhh-----hcCCCCCEEeccCcccccCcc-hhh-------------------------cCCCCCC
Q 045166 1 MFYLRNENTFLQRIPRSL-----INCSKLEFLGLGINQISDTFP-SWL-------------------------GTLPKLN 49 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~-------------------------~~l~~L~ 49 (305)
++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+ ..+++|+
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~ 327 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCccc
Confidence 468888888888888877 7777777777777776 245 222 4556666
Q ss_pred EEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccc--cCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc
Q 045166 50 VLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTG--KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT 127 (305)
Q Consensus 50 ~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g--~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (305)
+|++++|++++.+|..+ +.+++|++|++++|++++ .+|. .+..+++|+.|++++|.....
T Consensus 328 ~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~--------------- 389 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQNSVSYD--------------- 389 (520)
T ss_dssp EEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHH-HHTTCTTCCEEECCSSCCBCC---------------
T ss_pred EEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchH-HHhhCCCCCEEECCCCcCCcc---------------
Confidence 66666666666555555 566666666666666663 3332 255666666666665432210
Q ss_pred ccccccccccCcccccccccccccEEEccCCccccccchhhc-CCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166 128 YDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIA-NLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~-~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
++......+++|+.|++++|++++.+|..+. +|..|.+++ .+|..+..+++|++|++++|+++
T Consensus 390 -----------l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~- 457 (520)
T 2z7x_B 390 -----------EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK- 457 (520)
T ss_dssp -----------GGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-
T ss_pred -----------cccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-
Confidence 1111223367788888888888888877773 566655332 68888889999999999999999
Q ss_pred cCCCC--CCCCccCCCccCCCCCCCCcCC
Q 045166 203 PIPQG--KQFATFDNTSFDGNSGLCGKPL 229 (305)
Q Consensus 203 ~ip~~--~~~~~l~~~~~~gNp~lc~~~~ 229 (305)
.+|.. ..+..+..+++++||..|+|+.
T Consensus 458 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 458 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 56653 4567788889999999998753
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=9e-21 Score=185.09 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=121.9
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCC-CCEEEcccccceeeeCCCCCCC-----------
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPK-LNVLILRSNIFYGIIEEPRTSC----------- 69 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~----------- 69 (305)
+|+|++|+++ .+| .|+.+++|+.|++++|+++ .+|..+..+++ |++|+|++|.++ .+|..+...
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 4566666655 555 5555666666666666655 35555555555 555555555555 344433111
Q ss_pred ------------------CCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc----
Q 045166 70 ------------------GFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT---- 127 (305)
Q Consensus 70 ------------------~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---- 127 (305)
.+++|+.|++++|.++ .+|..++..+++|+.|++++|... .+|......
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~--------~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT--------SIPENSLKPKDGN 723 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--------CCCTTSSSCTTSC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--------ccChHHhcccccc
Confidence 2235666666666666 566555556667777777665332 122211110
Q ss_pred -----ccccccccccCc---ccccc-cccccccEEEccCCccccccchhhcCCCCce---e-----------eecCCccc
Q 045166 128 -----YDYSRTMNSKGR---VMTYN-KIPNILAGIILSNNRFDGAIPASIANLKGLQ---F-----------SGRIPQQL 184 (305)
Q Consensus 128 -----~~~~~~~~~~~~---~~~~~-~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l-----------~g~ip~~l 184 (305)
.+..+++..+.+ +..+. ..+++|+.|||++|++++ +|..+.++++|+ + .+.+|..+
T Consensus 724 l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l 802 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI 802 (876)
T ss_dssp CTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred ccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHH
Confidence 222333333322 22222 246778888888888885 787777776665 3 45678888
Q ss_pred cCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCC
Q 045166 185 AELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 224 (305)
Q Consensus 185 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~l 224 (305)
.++++|++|+|++|++ +.+|... ...+..+++++|+..
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNI 840 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTC
T ss_pred hcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCC
Confidence 8888888888888888 6777753 356777778888754
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.8e-21 Score=165.27 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=126.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|+++
T Consensus 66 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 141 (272)
T 3rfs_A 66 RYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF--DKLTNLTYLNLA 141 (272)
T ss_dssp CEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHh--ccCCCCCEEECC
Confidence 579999999986 3 489999999999999999999777778999999999999999998777667 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|+.|++++|..... .......+++|+.|++++|++
T Consensus 142 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 142 HNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL---------------------------PEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred CCccC-ccCHHHhccCccCCEEECCCCCcCcc---------------------------CHHHhcCCccCCEEECCCCcC
Confidence 99999 66666689999999999998643321 112223478899999999999
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 205 (305)
++..|.. +..+++|++|++++|+++|..|
T Consensus 194 ~~~~~~~----------------~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 194 KSVPDGV----------------FDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp SCCCTTT----------------TTTCTTCCEEECCSSCBCCCTT
T ss_pred CccCHHH----------------HhCCcCCCEEEccCCCccccCc
Confidence 9654433 4556667777777777766655
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=6.2e-21 Score=171.33 Aligned_cols=101 Identities=22% Similarity=0.163 Sum_probs=86.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|++++|.++...+..+..+++|++|++++|.+++..|..+ ..+++|++|+++
T Consensus 96 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~ 173 (390)
T 3o6n_A 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATTSLQNLQLS 173 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCTTCCEEECC
T ss_pred CEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhc--cCCCCCCEEECC
Confidence 579999999998888899999999999999999997433446899999999999999998777777 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
+|+++ .++ +..+++|+.+++++|
T Consensus 174 ~n~l~-~~~---~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 174 SNRLT-HVD---LSLIPSLFHANVSYN 196 (390)
T ss_dssp SSCCS-BCC---GGGCTTCSEEECCSS
T ss_pred CCcCC-ccc---cccccccceeecccc
Confidence 99998 555 456677777777764
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=2.3e-21 Score=169.49 Aligned_cols=197 Identities=19% Similarity=0.178 Sum_probs=133.8
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCC--------------
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPR-------------- 66 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-------------- 66 (305)
++|||++|++++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+..-
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~ 114 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc
Confidence 479999999998888899999999999999999988444 8899999999999999886432100
Q ss_pred CCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166 67 TSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI 146 (305)
Q Consensus 67 ~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
....+++|++|++++|++++ ++...+..+++|+.|++++|....... ..+...
T Consensus 115 ~~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------------~~~~~~ 167 (317)
T 3o53_A 115 SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNF--------------------------AELAAS 167 (317)
T ss_dssp EECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEG--------------------------GGGGGG
T ss_pred CccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccH--------------------------HHHhhc
Confidence 01245778999999999984 544458889999999999864432111 001112
Q ss_pred cccccEEEccCCccccccchh--hcCCCCceeee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCC
Q 045166 147 PNILAGIILSNNRFDGAIPAS--IANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDG 220 (305)
Q Consensus 147 ~~~L~~LdLs~N~l~g~~p~~--~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~g 220 (305)
+++|+.|+|++|++++. |.. +.+|..|.+++ .+|..+..+++|++|++++|++++..+....+..+..+++++
T Consensus 168 l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp TTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred cCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 34555556665555522 222 11222222221 244557778888888888888885433334566777888888
Q ss_pred CCCCCCc
Q 045166 221 NSGLCGK 227 (305)
Q Consensus 221 Np~lc~~ 227 (305)
|+..|++
T Consensus 247 N~~~~~~ 253 (317)
T 3o53_A 247 NGFHCGT 253 (317)
T ss_dssp CCCBHHH
T ss_pred CCccCcC
Confidence 8888753
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=8.9e-21 Score=164.72 Aligned_cols=195 Identities=15% Similarity=0.115 Sum_probs=146.3
Q ss_pred CEEEcccCcccc--ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeC-CCCCCCCCCCccEE
Q 045166 1 MFYLRNENTFLQ--RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE-EPRTSCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~l~~L~~L 77 (305)
++|+|++|+++. ..|..+..+++|++|++++|.++. +|..+..+++|++|++++|.+++..+ ..+ ..+++|++|
T Consensus 55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L 131 (306)
T 2z66_A 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYL 131 (306)
T ss_dssp SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCCEE
T ss_pred CEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCCEE
Confidence 478999999883 347788889999999999999987 77788899999999999999987544 355 788999999
Q ss_pred eCCCCcccccCChhhhhCcccchhccCcccccccc-cccCCCCcCCCccccccccccccccCcc---cccccccccccEE
Q 045166 78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQD-VLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGI 153 (305)
Q Consensus 78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L 153 (305)
++++|.+.+..| ..+..+++|++|++++|..... .+.....++ .+..+++..+.+. ......+++|+.|
T Consensus 132 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 132 DISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------NLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp ECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCT------TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ECCCCcCCccch-hhcccCcCCCEEECCCCccccccchhHHhhCc------CCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 999999986555 4488899999999988654331 111111111 2233334433332 3344557899999
Q ss_pred EccCCccccccchhhcCCCCce--------eeecCCccccCCC-CCCEEeccCCcceecCC
Q 045166 154 ILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELT-FLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 154 dLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip 205 (305)
+|++|++++..+..+..+++|+ +.+..|..+..++ +|++|++++|++++..+
T Consensus 205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9999999977676787777776 6677888888885 99999999999997643
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=186.91 Aligned_cols=108 Identities=20% Similarity=0.123 Sum_probs=84.7
Q ss_pred CEEEcccCcccccc-ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRI-PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|||++|.+.+.+ |.+|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|....++.+++|++||+
T Consensus 51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130 (844)
T ss_dssp SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEE
T ss_pred eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEEC
Confidence 47888888666565 77888888888888888888887788888888888888888888876665522278888888888
Q ss_pred CCCcccccCChhhhhCcccchhccCcccc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALR 108 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~ 108 (305)
++|.+++..|...++++++|++|++++|.
T Consensus 131 s~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp ESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCcccccccchhHhhCCCCCEEECCCCc
Confidence 88888855454457888888888887753
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.1e-20 Score=179.04 Aligned_cols=214 Identities=17% Similarity=0.100 Sum_probs=162.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.+++..+..|.++++|++|++++|+++. +|..+..+++|++|++++|.+++..|..+ ..+++|++|+++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 333 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPSLTHLSIK 333 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTTCSEEECC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhh--hccCcCCEEECC
Confidence 368999999998888889999999999999999995 89999999999999999999998778777 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccccccc--ccCCCCcCCCccccccccccccccCc---ccccccccccccEEEc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDV--LFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGIIL 155 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~LdL 155 (305)
+|.+.+.+|...+..+++|++|++++|...... ....+..+ .+..+.+..+.+ ....+..+++|+.|++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS------HLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT------TCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC------CCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 999998898877999999999999986544322 11111111 122333333332 2333445788999999
Q ss_pred cCCccccccchh-hcCCCCce--------eeecCCccccCCCCCCEEeccCCcceec-CCC---CCCCCccCCCccCCCC
Q 045166 156 SNNRFDGAIPAS-IANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGP-IPQ---GKQFATFDNTSFDGNS 222 (305)
Q Consensus 156 s~N~l~g~~p~~-~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~---~~~~~~l~~~~~~gNp 222 (305)
++|++++..|.. +.++++|+ +.+..|..+..+++|++|++++|++++. +|. ...+.++..+++++|.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 999998776654 66666665 4556777888899999999999998763 232 2345666777777774
Q ss_pred C
Q 045166 223 G 223 (305)
Q Consensus 223 ~ 223 (305)
.
T Consensus 488 l 488 (606)
T 3t6q_A 488 L 488 (606)
T ss_dssp C
T ss_pred c
Confidence 3
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.5e-20 Score=160.98 Aligned_cols=176 Identities=15% Similarity=0.091 Sum_probs=128.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 132 (276)
T 2z62_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVA 132 (276)
T ss_dssp SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECC
T ss_pred cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECc
Confidence 579999999998778899999999999999999999777889999999999999999998666567 899999999999
Q ss_pred CCcccc-cCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc----EEEc
Q 045166 81 DNRFTG-KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA----GIIL 155 (305)
Q Consensus 81 ~N~l~g-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~LdL 155 (305)
+|.+++ .+|.. +..+++|+.|++++|....... .. ...+.+|+ .|++
T Consensus 133 ~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~-------~~--------------------~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 133 HNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC-------TD--------------------LRVLHQMPLLNLSLDL 184 (276)
T ss_dssp SSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG-------GG--------------------GHHHHTCTTCCEEEEC
T ss_pred CCccceecCchh-hccCCCCCEEECCCCCCCcCCH-------HH--------------------hhhhhhccccceeeec
Confidence 999984 36755 8999999999999864432111 00 00111222 4445
Q ss_pred cCCccccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCC
Q 045166 156 SNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207 (305)
Q Consensus 156 s~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 207 (305)
++|++++..+..+. ..+|+ +++..+..+..+++|++|++++|++++..|..
T Consensus 185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 55554422222221 11222 22222345688999999999999999887743
No 56
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=2.3e-20 Score=155.54 Aligned_cols=154 Identities=20% Similarity=0.196 Sum_probs=113.9
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.++.++++++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+++...+..+ ..+++|++|+|++
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~--~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF--DSLTQLTVLDLGT 97 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCS
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc--ccCCCcCEEECCC
Confidence 5788888887 6776553 889999999999999778889999999999999999977555556 7899999999999
Q ss_pred CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD 161 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~ 161 (305)
|+++ .+|...|..+++|+.|++++|.... +|.. ...+++|+.|+|++|+|+
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~--------lp~~--------------------~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLTE--------LPRG--------------------IERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCS--------CCTT--------------------GGGCTTCSEEECCSSCCC
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCcccc--------cCcc--------------------cccCCCCCEEECCCCcCC
Confidence 9999 6666667778888888777753221 1111 122567777788887777
Q ss_pred cccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166 162 GAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 162 g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 205 (305)
+ +|. ..+..+++|++|++++|++++..+
T Consensus 149 ~-~~~---------------~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 149 S-IPH---------------GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-CCT---------------TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-cCH---------------HHHhCCCCCCEEEeeCCCccCCcc
Confidence 2 221 235667777788888887776554
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=1.8e-20 Score=161.73 Aligned_cols=170 Identities=19% Similarity=0.190 Sum_probs=136.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|++++|.+++ ++.. +.+++|++|++++|+++ .+|..+ ..+++|++|+++
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~l~ 108 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLG--QTLPALTVLDVS 108 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCT--TTCTTCCEEECC
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhh--ccCCCCCEEECC
Confidence 479999999998889999999999999999999998 5543 78999999999999998 477777 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...|..+++|+.|++++|..... ....+..+++|+.|+|++|+|
T Consensus 109 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 109 FNRLT-SLPLGALRGLGELQELYLKGNELKTL---------------------------PPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp SSCCC-CCCSSTTTTCTTCCEEECTTSCCCCC---------------------------CTTTTTTCTTCCEEECTTSCC
T ss_pred CCcCc-ccCHHHHcCCCCCCEEECCCCCCCcc---------------------------ChhhcccccCCCEEECCCCcC
Confidence 99999 66666699999999999998643321 111222367788888888888
Q ss_pred ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceec
Q 045166 161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ 203 (305)
++..+..+..+++|+ +++ .+|..+..+.+|+.++|++|++...
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 844444456566665 222 6788888889999999999999753
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.6e-20 Score=180.17 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=83.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|||++|.+++..+..|.++++|++|++++|.+++..|..++++++|++|+|++|.+++..+..+ +++++|++|+++
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~ 105 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF--AFCTNLTELHLM 105 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT--TTCTTCSEEECC
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh--ccCCCCCEEECC
Confidence 468888888887777778888888888888888888777788888888888888888876444456 778888888888
Q ss_pred CCcccccCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|+++ .+|...|+++++|++|++++|..
T Consensus 106 ~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 106 SNSIQ-KIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp SSCCC-CCCSCTTTTCTTCCEEECCSSCC
T ss_pred CCccC-ccChhHccccCCCCEEECCCCcc
Confidence 88887 45544578888888888887644
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=173.42 Aligned_cols=103 Identities=21% Similarity=0.156 Sum_probs=82.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|||++|++++..|..|.++++|++|++++|++++..|..|+++++|++|+|++|+++. +|.. .+++|++|+++
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~----~l~~L~~L~L~ 98 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH----PTVNLKHLDLS 98 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC----CCCCCSEEECC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc----ccCCccEEecc
Confidence 468888888887777788888888888888888888667888888888888888888874 5543 57888888888
Q ss_pred CCcccc-cCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTG-KLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g-~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|++++ .+|.. ++.+++|++|++++|..
T Consensus 99 ~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 99 FNAFDALPICKE-FGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp SSCCSSCCCCGG-GGGCTTCCEEEEEESSC
T ss_pred CCccccccchhh-hccCCcceEEEecCccc
Confidence 888885 45654 88888888888888654
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=3.1e-21 Score=180.63 Aligned_cols=191 Identities=23% Similarity=0.306 Sum_probs=129.3
Q ss_pred CEEEcccCccccccChhh-hcCCCCCEEeccCcccccCcchh---hcCCCCCCEEEcccccceeeeC--CCCCCCCCCCc
Q 045166 1 MFYLRNENTFLQRIPRSL-INCSKLEFLGLGINQISDTFPSW---LGTLPKLNVLILRSNIFYGIIE--EPRTSCGFSKL 74 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p--~~~~~~~l~~L 74 (305)
++|++++|++. .+|..+ ..+++|++|++++|++++.+|.. ++.+++|++|++++|++++..+ ..+ ..+++|
T Consensus 313 ~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--~~l~~L 389 (549)
T 2z81_A 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL--LTLKNL 389 (549)
T ss_dssp CEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG--GGCTTC
T ss_pred eEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh--hcCCCC
Confidence 35777888876 666665 46888888888888887765433 5677888888888888875322 234 677888
Q ss_pred cEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEE
Q 045166 75 RIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGII 154 (305)
Q Consensus 75 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld 154 (305)
++||+++|+++ .+|.. +..+++|+.|++++|.... ++. ..+++|+.||
T Consensus 390 ~~L~Ls~N~l~-~lp~~-~~~~~~L~~L~Ls~N~l~~--------l~~----------------------~~~~~L~~L~ 437 (549)
T 2z81_A 390 TSLDISRNTFH-PMPDS-CQWPEKMRFLNLSSTGIRV--------VKT----------------------CIPQTLEVLD 437 (549)
T ss_dssp CEEECTTCCCC-CCCSC-CCCCTTCCEEECTTSCCSC--------CCT----------------------TSCTTCSEEE
T ss_pred CEEECCCCCCc-cCChh-hcccccccEEECCCCCccc--------ccc----------------------hhcCCceEEE
Confidence 88888888888 67755 6777888888888754321 010 0123455555
Q ss_pred ccCCccccccchhhcCCCCceeee----cCCccccCCCCCCEEeccCCcceecCCCC-CCCCccCCCccCCCCCCCCcC
Q 045166 155 LSNNRFDGAIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP 228 (305)
Q Consensus 155 Ls~N~l~g~~p~~~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~l~~~~~~gNp~lc~~~ 228 (305)
|++|++++. +..+.+|+.|.+++ .+|. ...+++|++|||++|++++.+|.. ..+..+..+++++||+.|+|+
T Consensus 438 Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 438 VSNNNLDSF-SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCSCC-CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCChhhh-cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 555555532 22233333333222 4554 356889999999999999887763 567788888999999999876
No 61
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=2.8e-20 Score=154.08 Aligned_cols=156 Identities=17% Similarity=0.101 Sum_probs=119.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcc-hhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
+++++++|.++ .+|..+. ..+++|++++|++++..| ..|..+++|++|+|++|++++..+..+ .++++|++|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF--EGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh--CCCCCCCEEEC
Confidence 36899999998 5777653 457899999999998544 458899999999999999998777778 89999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
++|+++ .+|...|..+++|++|++++|..... ....+..+++|+.|||++|+
T Consensus 89 s~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 89 TSNRLE-NVQHKMFKGLESLKTLMLRSNRITCV---------------------------GNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCB---------------------------CTTSSTTCTTCSEEECTTSC
T ss_pred CCCccC-ccCHhHhcCCcCCCEEECCCCcCCeE---------------------------CHhHcCCCccCCEEECCCCc
Confidence 999999 56666688888888888887543221 11122236778888888888
Q ss_pred cccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166 160 FDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 205 (305)
+++..| ..|..+++|++|++++|++++..+
T Consensus 141 l~~~~~----------------~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 141 ITTVAP----------------GAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCBCT----------------TTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCEECH----------------HHhcCCCCCCEEEecCcCCcCCCc
Confidence 875433 445667788888888888887654
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=2.2e-21 Score=181.70 Aligned_cols=189 Identities=19% Similarity=0.155 Sum_probs=115.9
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 82 (305)
.|.++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..+ +++++|++||+++|
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF--YSLGSLEHLDLSDN 84 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTS
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc--cccccCCEEECCCC
Confidence 355666666 4555443 566777777777666556666667777777777777666555556 66667777777777
Q ss_pred cccccCChhhhhCcccchhccCcccccccccccCCCCcCCCcccc-ccccccccccC----cccccccccccccEEEccC
Q 045166 83 RFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGT-YDYSRTMNSKG----RVMTYNKIPNILAGIILSN 157 (305)
Q Consensus 83 ~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~L~~LdLs~ 157 (305)
+++ .+|...++.+++|++|++++|...... .+..+... .+..+++..+. .....+..+++|+.|++++
T Consensus 85 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLG------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CCC-SCCHHHHTTCTTCCEEECTTCCCSSSC------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ccC-ccCHHHhccCCCCcEEECCCCcccccc------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 766 344444666667777776665332110 01111100 12222222222 1222344578899999999
Q ss_pred CccccccchhhcCCCCce---eee----cCCcc-ccCCCCCCEEeccCCcceec
Q 045166 158 NRFDGAIPASIANLKGLQ---FSG----RIPQQ-LAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 158 N~l~g~~p~~~~~L~~L~---l~g----~ip~~-l~~l~~L~~L~Ls~N~l~g~ 203 (305)
|++++.+|..++++++|+ +.+ .+|.. +..+++|++|++++|++++.
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 999998999998888776 322 23333 34688999999999999874
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.2e-21 Score=170.88 Aligned_cols=193 Identities=19% Similarity=0.147 Sum_probs=141.6
Q ss_pred EEEcccCccc-cccChhhh-------cCCCCCEEeccCcccccCcchhh--cCCCCCCEEEcccccceeeeCCCCCCCCC
Q 045166 2 FYLRNENTFL-QRIPRSLI-------NCSKLEFLGLGINQISDTFPSWL--GTLPKLNVLILRSNIFYGIIEEPRTSCGF 71 (305)
Q Consensus 2 ~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~~~~l 71 (305)
+|+|++|++. +.+|..+. ++++|++|++++|.+++.+|..+ ..+++|++|++++|++++. |..+ +.+
T Consensus 67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--~~l 143 (312)
T 1wwl_A 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--AEL 143 (312)
T ss_dssp HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH--HHH
T ss_pred hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH--HHH
Confidence 4788899984 56777766 79999999999999998888876 8899999999999999876 6655 555
Q ss_pred -----CCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166 72 -----SKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI 146 (305)
Q Consensus 72 -----~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
++|++|++++|++++ ++...++.+++|++|++++|...+....+ .......
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------~~~~~~~ 199 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGERGLI-----------------------SALCPLK 199 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEEECCSCTTCHHHHHH-----------------------HHSCTTS
T ss_pred HHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEEECCCCCcCcchHHH-----------------------HHHHhcc
Confidence 889999999999984 44344889999999999986543211000 0001133
Q ss_pred cccccEEEccCCcccc--ccchh-hcCCCCce--------eeecCC-ccccCCCCCCEEeccCCcceecCCCCCCCCccC
Q 045166 147 PNILAGIILSNNRFDG--AIPAS-IANLKGLQ--------FSGRIP-QQLAELTFLAFFNVSDNYLTGPIPQGKQFATFD 214 (305)
Q Consensus 147 ~~~L~~LdLs~N~l~g--~~p~~-~~~L~~L~--------l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~ 214 (305)
+++|+.|+|++|++++ .++.. +.++++|+ +.+.+| ..+..+++|++|+|++|+++ .+|.... .++.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCce
Confidence 7889999999999983 33333 33444444 445554 45666889999999999998 7776544 6788
Q ss_pred CCccCCCCC
Q 045166 215 NTSFDGNSG 223 (305)
Q Consensus 215 ~~~~~gNp~ 223 (305)
.+++++|..
T Consensus 278 ~L~Ls~N~l 286 (312)
T 1wwl_A 278 VLDLSYNRL 286 (312)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCCC
Confidence 888888854
No 64
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=7.1e-21 Score=169.33 Aligned_cols=182 Identities=20% Similarity=0.216 Sum_probs=138.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
+++++++|+++ .+|..+. ..++.|+|++|+|++..+..+. .+++|++|+|++|++++..+..+ .++++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEEC
Confidence 36899999998 6776554 4689999999999996666677 89999999999999998777778 89999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
++|+++ .+|...|..+++|+.|++++|..... ....+..+++|+.|+|++|+
T Consensus 96 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~---------------------------~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 96 SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV---------------------------DRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCC-cCCHHHhCCCcCCCEEECCCCcccEE---------------------------CHHHhCCcccCCEEECCCCc
Confidence 999999 66666799999999999998644321 11222347889999999999
Q ss_pred cccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC-CCCCc--cCCCccCCCCCCCCcC
Q 045166 160 FDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG-KQFAT--FDNTSFDGNSGLCGKP 228 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~--l~~~~~~gNp~lc~~~ 228 (305)
|+ .+|..+. ..+..+++|++|||++|+|++..+.. ..+.. +..+.+.+||+.|+|.
T Consensus 148 l~-~l~~~~~------------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 148 IS-RFPVELI------------KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CC-SCCGGGT------------C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CC-eeCHHHh------------cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 99 4444320 11256889999999999999533221 12222 3567899999999874
No 65
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=8e-21 Score=155.83 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=101.2
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++
T Consensus 11 ~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLST 85 (208)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCS
T ss_pred EEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc--CCCCCcCEEECCC
Confidence 5778888887 566544 4689999999999988666667889999999999999987655556 7889999999999
Q ss_pred CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD 161 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~ 161 (305)
|+++ .+|...+..+++|++|++++|.... .....+..+++|+.|++++|+++
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQS---------------------------LPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCC---------------------------CCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCC-ccCHhHhcCccCCCEEEcCCCcCcc---------------------------cCHhHhccCCcCCEEECCCCccc
Confidence 9998 6666668889999999998854321 11112233678999999999998
Q ss_pred cccchhhc
Q 045166 162 GAIPASIA 169 (305)
Q Consensus 162 g~~p~~~~ 169 (305)
+..+..+.
T Consensus 138 ~~~~~~~~ 145 (208)
T 2o6s_A 138 SVPDGVFD 145 (208)
T ss_dssp CCCTTTTT
T ss_pred eeCHHHhc
Confidence 44333333
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=173.31 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=92.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|||++|++++..+.+|.++++|++|++++|++++..|..|.++++|++|++++|.+++..|..+ .++++|++|+++
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 108 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV 108 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECT
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh--cCcccccccccc
Confidence 479999999998888899999999999999999998667789999999999999999998777778 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|+++ .+|...++.+++|++|++++|..
T Consensus 109 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp TSCCC-CSTTCSCTTCTTCCEEECCSSCC
T ss_pred ccccc-cCCCccccccccccEEecCCCcc
Confidence 99998 66654488899999999988643
No 67
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.1e-19 Score=170.93 Aligned_cols=103 Identities=20% Similarity=0.123 Sum_probs=79.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|||++|++++..|.+|.++++|++|++++|++++..|+.|.++++|++|+|++|+++. +|.. .+++|++||++
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~----~l~~L~~L~Ls 129 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC----PMASLRHLDLS 129 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC----CCTTCSEEECC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc----ccccCCEEECC
Confidence 468888888887777788888888888888888888667778888888888888888874 5543 57888888888
Q ss_pred CCcccc-cCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTG-KLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g-~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|++++ .+|.. ++++++|++|++++|..
T Consensus 130 ~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 130 FNDFDVLPVCKE-FGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp SSCCSBCCCCGG-GGGCTTCCEEEEECSBC
T ss_pred CCCccccCchHh-hcccCcccEEecCCCcc
Confidence 888874 23433 88888888888887544
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=166.31 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=143.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCC--CCCCCCCCCccEEe
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE--PRTSCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~~l~~L~~L~ 78 (305)
++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++ +|. .+ ..+++|++|+
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~--~~l~~L~~L~ 155 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLF--SHLTKLQILR 155 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSC--TTCTTCCEEE
T ss_pred CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhh--ccCCCCcEEE
Confidence 579999999998888899999999999999999998444458999999999999999986 554 56 7899999999
Q ss_pred CCCCc-ccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCc---ccccccccccccEEE
Q 045166 79 LSDNR-FTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGR---VMTYNKIPNILAGII 154 (305)
Q Consensus 79 Ls~N~-l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~Ld 154 (305)
+++|+ +. .++...+..+++|+.|++++|..........+.++ .+..+++..+.+ ...+...+++|+.|+
T Consensus 156 l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 156 VGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ------NVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp EEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS------EEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred CCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc------cCCeecCCCCccccchhhhhhhcccccEEE
Confidence 99995 66 66555589999999999998654332111111111 122223333322 222233367788888
Q ss_pred ccCCccccc-------------------------------cchhhcCCCCce---eee----cCCcc-ccCCCCCCEEec
Q 045166 155 LSNNRFDGA-------------------------------IPASIANLKGLQ---FSG----RIPQQ-LAELTFLAFFNV 195 (305)
Q Consensus 155 Ls~N~l~g~-------------------------------~p~~~~~L~~L~---l~g----~ip~~-l~~l~~L~~L~L 195 (305)
+++|++++. +|..+.++++|+ +++ .+|.. +..+++|++|++
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence 888887752 455666666666 222 56766 589999999999
Q ss_pred cCCcceecCCC
Q 045166 196 SDNYLTGPIPQ 206 (305)
Q Consensus 196 s~N~l~g~ip~ 206 (305)
++|++++..|.
T Consensus 309 ~~N~~~~~~~~ 319 (353)
T 2z80_A 309 HTNPWDCSCPR 319 (353)
T ss_dssp CSSCBCCCHHH
T ss_pred eCCCccCcCCC
Confidence 99999987763
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=7e-20 Score=173.49 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=152.0
Q ss_pred CEEEcccCccccc--cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeC-CCCCCCCCCCccEE
Q 045166 1 MFYLRNENTFLQR--IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIE-EPRTSCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~l~~L~~L 77 (305)
++|++++|++++. +|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+ ..+++|++|
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L 429 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYL 429 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEE
Confidence 4799999999866 48899999999999999999987 77888999999999999999988766 456 789999999
Q ss_pred eCCCCcccccCChhhhhCcccchhccCcccccccc-cccCCCCcCCCccccccccccccccCcc---cccccccccccEE
Q 045166 78 DLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQD-VLFPYGQVSSNVLGTYDYSRTMNSKGRV---MTYNKIPNILAGI 153 (305)
Q Consensus 78 ~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L 153 (305)
++++|.+++..|.. +..+++|+.|++++|...+. .+...+.+ ..+..+++..+.+. ......+++|+.|
T Consensus 430 ~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 430 DISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDNTLSNVFANT------TNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp ECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTC------TTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ECcCCCCCccchhh-hcCCCCCCEEECCCCcCCCcchHHhhccC------CCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 99999999767754 88999999999998755431 11111111 12333444444333 3334558899999
Q ss_pred EccCCccccccchhhcCCCCce---eee----cCCccccCCC-CCCEEeccCCcceecCCC
Q 045166 154 ILSNNRFDGAIPASIANLKGLQ---FSG----RIPQQLAELT-FLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 154 dLs~N~l~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~ 206 (305)
+|++|++++.+|..+.++++|+ +++ .+|..+..++ +|++|++++|++.+..+.
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999988899999888877 222 5777788887 699999999999987664
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=2.1e-19 Score=151.72 Aligned_cols=145 Identities=18% Similarity=0.128 Sum_probs=121.8
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|++++|.+++..|..+..+++|++|++++|++++..+..+ ..+++|++|+++
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 115 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF--DHLTQLDKLYLG 115 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh--cccCCCCEEEcC
Confidence 479999999998888899999999999999999999777789999999999999999998776777 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|+.|++++|..... ....+..+++|+.|||++|++
T Consensus 116 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI---------------------------PAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCC-CcChhHhccCCcccEEECcCCcCCcc---------------------------CHHHcCcCcCCCEEECCCCcC
Confidence 99999 67767789999999999998643221 111223367899999999999
Q ss_pred ccccchhhcCCCCce
Q 045166 161 DGAIPASIANLKGLQ 175 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~ 175 (305)
++..|..+.++++|+
T Consensus 168 ~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQ 182 (251)
T ss_dssp SCCCTTTTTTCTTCC
T ss_pred CccCHHHHhCCCCCC
Confidence 966666777766665
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.5e-19 Score=145.70 Aligned_cols=149 Identities=9% Similarity=0.089 Sum_probs=115.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..|..+ +.+++|++|+++
T Consensus 47 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls 120 (197)
T 4ezg_A 47 TYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNL--SGLTSLTLLDIS 120 (197)
T ss_dssp CEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCC--TTCTTCCEEECC
T ss_pred cEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhh--cCCCCCCEEEec
Confidence 47899999998 666 68899999999999997764 3478889999999999999988778888 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|.+++..|.. +..+++|+.|++++|..+.... ....+++|+.|++++|++
T Consensus 121 ~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~~----------------------------~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 121 HSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM----------------------------PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp SSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCCG----------------------------GGGGCSSCCEEECTTBCC
T ss_pred CCccCcHhHHH-HhhCCCCCEEEccCCCCccccH----------------------------hhcCCCCCCEEECCCCCC
Confidence 99998666654 8889999999988864332111 122367899999999988
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
++ ++ .+..+++|++|++++|++.+
T Consensus 172 ~~-~~-----------------~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 172 HD-YR-----------------GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CC-CT-----------------TGGGCSSCCEEEECBC----
T ss_pred cC-hH-----------------HhccCCCCCEEEeeCcccCC
Confidence 83 22 35678889999999998864
No 72
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=7.9e-20 Score=148.13 Aligned_cols=132 Identities=22% Similarity=0.248 Sum_probs=103.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcch-hhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPS-WLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
+++++++|+++ .+|..+.. +|++|++++|++++..+. .+..+++|++|+|++|++++..|..+ .++++|++|+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--EGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--TTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc--CCcccCCEEEC
Confidence 46899999996 77776544 899999999999885443 48899999999999999998888888 88999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
++|++++..| ..|.. +++|+.|||++|+
T Consensus 86 s~N~l~~~~~-~~~~~---------------------------------------------------l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 86 GENKIKEISN-KMFLG---------------------------------------------------LHQLKTLNLYDNQ 113 (192)
T ss_dssp CSCCCCEECS-SSSTT---------------------------------------------------CTTCCEEECCSSC
T ss_pred CCCcCCccCH-HHhcC---------------------------------------------------CCCCCEEECCCCc
Confidence 9999984433 32332 4567788888888
Q ss_pred cccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166 160 FDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 205 (305)
|++..| ..+..+++|++|+|++|++++..+
T Consensus 114 l~~~~~----------------~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 114 ISCVMP----------------GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECT----------------TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCeeCH----------------HHhhcCCCCCEEEeCCCCccCcCc
Confidence 885444 445677788888888888887665
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2.8e-19 Score=155.62 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=120.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.++ .+| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+ ..+++|++|+++
T Consensus 44 ~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~--~~l~~L~~L~l~ 115 (308)
T 1h6u_A 44 TTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AI--AGLQSIKTLDLT 115 (308)
T ss_dssp CEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GG--TTCTTCCEEECT
T ss_pred CEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hh--cCCCCCCEEECC
Confidence 47899999988 455 68899999999999999987 555 8899999999999999986 34 45 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|. +..+++|+.|++++|....... ...+++|+.|++++|++
T Consensus 116 ~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-----------------------------l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 116 STQIT-DVTP--LAGLSNLQVLYLDLNQITNISP-----------------------------LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp TSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG-----------------------------GGGCTTCCEEECCSSCC
T ss_pred CCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc-----------------------------ccCCCCccEEEccCCcC
Confidence 99998 5663 8889999999998864322110 11244555555555555
Q ss_pred ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166 161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~ 223 (305)
++ ++. +..+++|+ +++ .++. +..+++|++|++++|++++..| ...+..+..+++++|+.
T Consensus 164 ~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 164 SD-LTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred CC-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 53 232 44444443 111 1222 5566666666666666664432 33445555555566654
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.79 E-value=1.8e-18 Score=158.50 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=80.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++||+++|.+++ +| .+..+++|++|++++|++++ +| ++.+++|++|++++|.+++. | + +.+++|++|+++
T Consensus 45 ~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~--~~l~~L~~L~L~ 114 (457)
T 3bz5_A 45 TSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--V--TPLTKLTYLNCD 114 (457)
T ss_dssp CEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--C--TTCTTCCEEECC
T ss_pred CEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--c--CCCCcCCEEECC
Confidence 578999999986 45 68999999999999999988 55 88899999999999999874 3 5 788999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~ 110 (305)
+|+++ .+| ++.+++|+.|++++|...
T Consensus 115 ~N~l~-~l~---~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 115 TNKLT-KLD---VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp SSCCS-CCC---CTTCTTCCEEECTTSCCS
T ss_pred CCcCC-eec---CCCCCcCCEEECCCCccc
Confidence 99998 465 778889999998886543
No 75
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.7e-18 Score=141.94 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=122.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|+++
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~ 108 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELALN 108 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEEEcC
Confidence 478999999997777778899999999999999988555567889999999999999987665556 788999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...+..+++|+.|++++|.... ........+++|+.|++++|.+
T Consensus 109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~---------------------------~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 109 TNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS---------------------------VPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCSC---------------------------CCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCc-ccCHhHhccCCcCCEEECCCCccce---------------------------eCHHHhccCCCccEEEecCCCe
Confidence 99998 5666668889999999988854321 1111223367899999999977
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCCCC
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQG 207 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 207 (305)
. +.+++|++|+++.|+++|.+|..
T Consensus 161 ~-----------------------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 161 D-----------------------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp C-----------------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred e-----------------------cCCCCHHHHHHHHHhCCceeecc
Confidence 6 34567889999999999999863
No 76
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.3e-18 Score=144.97 Aligned_cols=134 Identities=17% Similarity=0.098 Sum_probs=113.2
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|++|+|++|++++..+..+ ..+++|++|+++
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~l~~L~~L~Ls 120 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF--DRLVHLKELFMC 120 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHh--CcchhhCeEecc
Confidence 579999999999889999999999999999999988555678899999999999999998766667 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|.. +..+++|+.|++++|..... ....+..+++|+.|+|++|.+
T Consensus 121 ~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 121 CNKLT-ELPRG-IERLTHLTHLALDQNQLKSI---------------------------PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SSCCC-SCCTT-GGGCTTCSEEECCSSCCCCC---------------------------CTTTTTTCTTCCEEECTTSCB
T ss_pred CCccc-ccCcc-cccCCCCCEEECCCCcCCcc---------------------------CHHHHhCCCCCCEEEeeCCCc
Confidence 99999 89976 78999999999998643321 112223478899999999999
Q ss_pred ccccc
Q 045166 161 DGAIP 165 (305)
Q Consensus 161 ~g~~p 165 (305)
.+..+
T Consensus 172 ~c~c~ 176 (229)
T 3e6j_A 172 DCECR 176 (229)
T ss_dssp CTTBG
T ss_pred cCCcc
Confidence 86543
No 77
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=145.75 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=112.4
Q ss_pred CEEEcccCccccccC-hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIP-RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|+|++|++++..| ..|..+++|++|++++|++++..+..|..+++|++|+|++|.+++..+..+ .++++|++|+|
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L 112 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF--KGLESLKTLML 112 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGG--TTCSSCCEEEC
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHh--cCCcCCCEEEC
Confidence 479999999997755 468999999999999999999777789999999999999999998777667 88999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
++|++++..| ..|..+++|+.|++++|..... ....+..+++|+.|+|++|.
T Consensus 113 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGN-DSFIGLSSVRLLSLYDNQITTV---------------------------APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCB---------------------------CTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECH-hHcCCCccCCEEECCCCcCCEE---------------------------CHHHhcCCCCCCEEEecCcC
Confidence 9999995555 4589999999999998644321 11222347889999999999
Q ss_pred cccccc
Q 045166 160 FDGAIP 165 (305)
Q Consensus 160 l~g~~p 165 (305)
+++..+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 986554
No 78
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1.3e-18 Score=144.08 Aligned_cols=133 Identities=21% Similarity=0.212 Sum_probs=110.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+++...+..+ .++++|++|+|+
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~ 112 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF--EGLFSLQLLLLN 112 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc--cCCCCCCEEECC
Confidence 479999999998778899999999999999999999779999999999999999999997555556 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|++++ ++...|.. +++|+.|||++|+|
T Consensus 113 ~N~l~~-~~~~~~~~---------------------------------------------------l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 113 ANKINC-LRVDAFQD---------------------------------------------------LHNLNLLSLYDNKL 140 (220)
T ss_dssp SSCCCC-CCTTTTTT---------------------------------------------------CTTCCEEECCSSCC
T ss_pred CCCCCE-eCHHHcCC---------------------------------------------------CCCCCEEECCCCcC
Confidence 999994 44332432 45678888889988
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceec
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 203 (305)
++..+ ..+..+++|++|++++|++.+.
T Consensus 141 ~~~~~----------------~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 141 QTIAK----------------GTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SCCCT----------------TTTTTCTTCCEEECCSSCEECS
T ss_pred CEECH----------------HHHhCCCCCCEEEeCCCCcCCC
Confidence 84332 3456788899999999998753
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=4.6e-19 Score=157.63 Aligned_cols=159 Identities=16% Similarity=0.072 Sum_probs=124.5
Q ss_pred CEEEcccCccccccChhhh-cCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLI-NCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|||++|++++..+..|. ++++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+ .++++|++|+|
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L 119 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF--SDLQALEVLLL 119 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHh--CCCcCCCEEEC
Confidence 4799999999987788887 99999999999999999777789999999999999999998776677 89999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
++|++++ ++...|..+++|+.|++++|.... +|...+. ....+++|+.|||++|+
T Consensus 120 ~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~--------l~~~~~~----------------~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 120 YNNHIVV-VDRNAFEDMAQLQKLYLSQNQISR--------FPVELIK----------------DGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCE-ECTTTTTTCTTCCEEECCSSCCCS--------CCGGGTC--------------------CTTCCEEECCSSC
T ss_pred CCCcccE-ECHHHhCCcccCCEEECCCCcCCe--------eCHHHhc----------------CcccCCcCCEEECCCCC
Confidence 9999994 544559999999999999864332 1111000 00237889999999999
Q ss_pred cccccchhhcCCCCceeeecCCccccCCCC--CCEEeccCCccee
Q 045166 160 FDGAIPASIANLKGLQFSGRIPQQLAELTF--LAFFNVSDNYLTG 202 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~--L~~L~Ls~N~l~g 202 (305)
|++..+..+ ..++. ++.|+|++|++..
T Consensus 175 l~~l~~~~~----------------~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDL----------------QKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHH----------------HHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHh----------------hhccHhhcceEEecCCCccC
Confidence 994333344 33333 4678888888864
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1e-18 Score=154.30 Aligned_cols=202 Identities=16% Similarity=0.144 Sum_probs=138.2
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.....++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+ + ..+++|++|+++
T Consensus 135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~l~ 207 (347)
T 4fmz_A 135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISP--L--ASLTSLHYFTAY 207 (347)
T ss_dssp CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGG--G--GGCTTCCEEECC
T ss_pred eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCccccccc--c--cCCCccceeecc
Confidence 478899997664544 48889999999999999887 443 7888999999999998876433 5 678888999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-ccccccccccEEEccCCc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNNR 159 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N~ 159 (305)
+|.+. .++. +..+++|+.|++++|....... ....+ .+..+++..+.+.. .....+++|+.|++++|+
T Consensus 208 ~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 208 VNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp SSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred cCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEEECCCCccCCChhHhcCCCcCEEEccCCc
Confidence 88888 4443 7788888888888864432211 11110 11222222222211 223447788889999998
Q ss_pred cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166 160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~ 223 (305)
+++ +| .+..+++|+ +.+..|..+..+++|++|++++|++++..| ...+..+..+++++|+.
T Consensus 277 l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 277 ISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred cCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 884 43 455555555 445666778888999999999999887666 55677777788888863
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.1e-18 Score=165.66 Aligned_cols=101 Identities=21% Similarity=0.214 Sum_probs=86.6
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 82 (305)
.|-++.+++ .+|..+. +++++|||++|+|++..|..|.++++|++|+|++|++++..|..| .++++|++|+|++|
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGN 110 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh--cCCCCCCEEEccCC
Confidence 455566676 6776542 589999999999999666789999999999999999998777778 89999999999999
Q ss_pred cccccCChhhhhCcccchhccCccccc
Q 045166 83 RFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 83 ~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+++ .+|.+.|.++++|++|++++|+.
T Consensus 111 ~l~-~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 111 PIQ-SLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp CCC-EECGGGGTTCTTCCEEECTTSCC
T ss_pred cCC-CCCHHHhcCCCCCCEEECCCCcC
Confidence 999 78877799999999999998644
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=153.98 Aligned_cols=175 Identities=14% Similarity=0.082 Sum_probs=126.1
Q ss_pred CEEEcccCccccccC----hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceee--eCCCCCCCCCCCc
Q 045166 1 MFYLRNENTFLQRIP----RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGI--IEEPRTSCGFSKL 74 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~~l~~L 74 (305)
++|+|++|.+++..| ..+..+++|++|++++|.+++..|..++.+++|++|+|++|++.+. ++.......+++|
T Consensus 120 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 199 (310)
T 4glp_A 120 SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI 199 (310)
T ss_dssp SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence 468999999997665 4556899999999999999997788999999999999999998753 3222222678999
Q ss_pred cEEeCCCCcccccCCh---hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccccccc
Q 045166 75 RIIDLSDNRFTGKLPS---NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILA 151 (305)
Q Consensus 75 ~~L~Ls~N~l~g~lp~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 151 (305)
++|++++|+++ .+|. ..+..+++|++|++++|......+ ..+.. ...+++|+
T Consensus 200 ~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-------~~~~~-----------------~~~~~~L~ 254 (310)
T 4glp_A 200 QNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVN-------PSAPR-----------------CMWSSALN 254 (310)
T ss_dssp CSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-------SCCSS-----------------CCCCTTCC
T ss_pred CEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccch-------hhHHh-----------------ccCcCcCC
Confidence 99999999997 4543 246788999999999975433211 11100 00135677
Q ss_pred EEEccCCccccccchhhc-CCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166 152 GIILSNNRFDGAIPASIA-NLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 152 ~LdLs~N~l~g~~p~~~~-~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
.|+|++|+|+ .+|..+. +|+.|.+++ .+|. +..+++|+.|++++|+++.
T Consensus 255 ~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 255 SLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCCCC-chhhhhcCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 7777777777 5665543 344444332 2233 5778999999999999873
No 83
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=4.1e-18 Score=156.08 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=71.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++ +| ++.+++|++|++++|.+++ +| ++.+++|++|++++|++++ +| + +.+++|++|+++
T Consensus 67 ~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~--~~l~~L~~L~l~ 135 (457)
T 3bz5_A 67 TKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--V--SQNPLLTYLNCA 135 (457)
T ss_dssp SEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--C--TTCTTCCEEECT
T ss_pred CEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--C--CCCCcCCEEECC
Confidence 478888888885 34 7888888888888888887 44 7788888888888888876 43 5 678888888888
Q ss_pred CCcccccCChhhhhCcccchhccCcccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~ 110 (305)
+|++++ ++ ++.+++|+.|++++|..+
T Consensus 136 ~N~l~~-l~---l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 136 RNTLTE-ID---VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp TSCCSC-CC---CTTCTTCCEEECTTCSCC
T ss_pred CCccce-ec---cccCCcCCEEECCCCCcc
Confidence 888874 44 566777777777765433
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=4.7e-19 Score=154.74 Aligned_cols=202 Identities=17% Similarity=0.105 Sum_probs=144.8
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.++++.+.+...++..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ + ..+++|++|++++
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNN 89 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E--TTCTTCCEEECCS
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h--hhcCCCCEEECcC
Confidence 35667777776666666778899999999999999777899999999999999999998665 6 8899999999999
Q ss_pred CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccC---cccccccccccccEEEccCC
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG---RVMTYNKIPNILAGIILSNN 158 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~LdLs~N 158 (305)
|+++ .+| ..++|+.|++++|....... ..++ .+..+.+..+. ........+++|+.|||++|
T Consensus 90 n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~---~~~~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 90 NYVQ-ELL-----VGPSIETLHAANNNISRVSC---SRGQ------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp SEEE-EEE-----ECTTCCEEECCSSCCSEEEE---CCCS------SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred Cccc-ccc-----CCCCcCEEECCCCccCCcCc---cccC------CCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 9998 454 23789999998865433211 1111 12222333332 22334445788999999999
Q ss_pred ccccccchhhc-CCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166 159 RFDGAIPASIA-NLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 159 ~l~g~~p~~~~-~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~ 223 (305)
++++..|..+. .+++|+ +++ .+|. ...+++|++|++++|++++..+....+..+..+++++|..
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l 226 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcc
Confidence 99977776663 455554 332 1222 3358899999999999997666555567777788888854
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.1e-18 Score=154.46 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=126.0
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCC-CCCCCCCCCccE-EeC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEE-PRTSCGFSKLRI-IDL 79 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~l~~L~~-L~L 79 (305)
+++.++|+++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|. .| .++++++. +++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f--~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB--CSCTTCCEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh--hcchhhhhhhcc
Confidence 5677888888 677765 46889999999999874344688899999999999988776665 34 67777664 666
Q ss_pred CCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccc----cCcccc-cccccccccEEE
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNS----KGRVMT-YNKIPNILAGII 154 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~L~~Ld 154 (305)
+.|+++ .+|.+.|..+++|+.|++++|........... . ........+.. ..+... +......++.|+
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---~---~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---H---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---C---BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhc---c---cchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 778888 66656688899999999888644321111000 0 00011111111 111111 222234688999
Q ss_pred ccCCccccccchhhcCCCCce--------eeecCCc-cccCCCCCCEEeccCCcceecCCC
Q 045166 155 LSNNRFDGAIPASIANLKGLQ--------FSGRIPQ-QLAELTFLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 155 Ls~N~l~g~~p~~~~~L~~L~--------l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~ 206 (305)
|++|+|+ .+|.......+|+ ..+.+|. .|..+++|++||+++|+|+ .+|.
T Consensus 161 L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 161 LNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp CCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred ccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence 9999999 6666655444444 2335664 6789999999999999998 4454
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=4.3e-18 Score=148.06 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=123.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++. +. +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++. +. + ..+++|++|+++
T Consensus 66 ~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~-~~-l--~~l~~L~~L~l~ 137 (308)
T 1h6u_A 66 IGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDV-TP-L--AGLSNLQVLYLD 137 (308)
T ss_dssp CEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCC-GG-G--TTCTTCCEEECC
T ss_pred CEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCc-hh-h--cCCCCCCEEECC
Confidence 5799999999854 44 9999999999999999987 55 689999999999999999874 43 6 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|.++ .++. +..+++|+.|++++|....... ...+++|+.|++++|++
T Consensus 138 ~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-----------------------------l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 138 LNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP-----------------------------LANLSKLTTLKADDNKI 185 (308)
T ss_dssp SSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG-----------------------------GTTCTTCCEEECCSSCC
T ss_pred CCccC-cCcc--ccCCCCccEEEccCCcCCCChh-----------------------------hcCCCCCCEEECCCCcc
Confidence 99999 5663 8899999999999864322100 12366777888888877
Q ss_pred ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCccee
Q 045166 161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
++ +|. +..+++|+ +++ .++ .+..+++|++|++++|++++
T Consensus 186 ~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SD-ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred Cc-Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence 74 333 55555554 221 233 37889999999999999986
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.1e-18 Score=161.06 Aligned_cols=190 Identities=18% Similarity=0.122 Sum_probs=141.2
Q ss_pred ccChhhhcCC----CCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccC
Q 045166 13 RIPRSLINCS----KLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKL 88 (305)
Q Consensus 13 ~~p~~~~~l~----~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~l 88 (305)
.+|..+..+. +|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| + ..+++|++||+++|.++ .+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~l~-~l 95 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNNYVQ-EL 95 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSSEEE-EE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCCcCC-CC
Confidence 3455665554 89999999999999778899999999999999999998776 6 88999999999999999 45
Q ss_pred ChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccC---cccccccccccccEEEccCCccccccc
Q 045166 89 PSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKG---RVMTYNKIPNILAGIILSNNRFDGAIP 165 (305)
Q Consensus 89 p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~~LdLs~N~l~g~~p 165 (305)
|. .++|+.|++++|....... ..++ .+..+.+..+. .....+..+++|+.|||++|.+++.+|
T Consensus 96 ~~-----~~~L~~L~L~~N~l~~~~~---~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 96 LV-----GPSIETLHAANNNISRVSC---SRGQ------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp EE-----CTTCCEEECCSSCCCCEEE---CCCS------SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred CC-----CCCcCEEECcCCcCCCCCc---cccC------CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 52 3789999999865433211 1111 12223333333 333344558899999999999998888
Q ss_pred hhhc-CCCCce--------eeecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166 166 ASIA-NLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 166 ~~~~-~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~ 223 (305)
..+. .+++|+ +++. | ....+++|++|+|++|++++.+|....+..+..+++++|..
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred HHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence 8775 566665 3333 2 23468999999999999998777655667788888888854
No 88
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=4.6e-18 Score=156.18 Aligned_cols=202 Identities=20% Similarity=0.199 Sum_probs=141.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.+++ + ..+..+++|++|++++|.+++..| ++.+++|++|++++|.+++. + .+ ..+++|+.|+++
T Consensus 180 ~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~l--~~l~~L~~L~l~ 251 (466)
T 1o6v_A 180 ERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-G-TL--ASLTNLTDLDLA 251 (466)
T ss_dssp CEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-G-GG--GGCTTCSEEECC
T ss_pred CEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-h-hh--hcCCCCCEEECC
Confidence 478999999874 3 358889999999999999987544 77788999999999988763 3 34 678889999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccc-cccccccccEEEccCCc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMT-YNKIPNILAGIILSNNR 159 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~LdLs~N~ 159 (305)
+|.+++ ++. +..+++|+.|++++|....... ....+ .+..+++..+.+... ....+++|+.|+|++|+
T Consensus 252 ~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 252 NNQISN-LAP--LSGLTKLTELKLGANQISNISP--LAGLT------ALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp SSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT------TCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred CCcccc-chh--hhcCCCCCEEECCCCccCcccc--ccCCC------ccCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence 998884 442 7788888888888864433211 11110 122222222222211 13457889999999999
Q ss_pred cccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCCCC
Q 045166 160 FDGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC 225 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~lc 225 (305)
+++..| +..+++|+ +.+ .+ ..+..+++|++|++++|++++.+| ...+..+..+++++|+...
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 997665 56666665 322 12 468889999999999999998887 5667778888888887554
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.6e-18 Score=146.69 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=110.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.++. +| .+..+++|++|++++|++++ ++. +..+++|++|++++|.+++ +|. + ..+++|++|+++
T Consensus 49 ~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l--~~l~~L~~L~L~ 120 (291)
T 1h6t_A 49 DQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-L--KDLKKLKSLSLE 120 (291)
T ss_dssp CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-G--TTCTTCCEEECT
T ss_pred cEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-h--ccCCCCCEEECC
Confidence 468889998874 44 48889999999999999987 444 8889999999999999876 333 5 788899999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .++ . +..+++|+.|++++|..... .....+++|+.|++++|++
T Consensus 121 ~n~i~-~~~-~-l~~l~~L~~L~l~~n~l~~~-----------------------------~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 121 HNGIS-DIN-G-LVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp TSCCC-CCG-G-GGGCTTCCEEECCSSCCCCC-----------------------------GGGGGCTTCSEEECCSSCC
T ss_pred CCcCC-CCh-h-hcCCCCCCEEEccCCcCCcc-----------------------------hhhccCCCCCEEEccCCcc
Confidence 99998 454 3 78888899998887543221 1122367788888888888
Q ss_pred ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCccee
Q 045166 161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
++..| +..+++|+ +++ .+| .+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence 84333 44444443 111 122 25555566666666665553
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=9e-18 Score=140.56 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=119.6
Q ss_pred CEEEcccCc-cccccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCcc---
Q 045166 1 MFYLRNENT-FLQRIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLR--- 75 (305)
Q Consensus 1 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~--- 75 (305)
++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. + ..+++|+
T Consensus 58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~--~~l~~L~~L~ 133 (239)
T 2xwt_C 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-L--TKVYSTDIFF 133 (239)
T ss_dssp CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-C--TTCCBCCSEE
T ss_pred cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-c--cccccccccc
Confidence 579999997 8866677899999999999999 99998666788999999999999999987 676 6 7888888
Q ss_pred EEeCCCC-cccccCChhhhhCcccch-hccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEE
Q 045166 76 IIDLSDN-RFTGKLPSNSFLCWNAMK-IVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGI 153 (305)
Q Consensus 76 ~L~Ls~N-~l~g~lp~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 153 (305)
+|++++| .++ .+|...|..+++|+ .|++++|.... ++... +. .++|+.|
T Consensus 134 ~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~--------i~~~~-------------------~~-~~~L~~L 184 (239)
T 2xwt_C 134 ILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTS--------VQGYA-------------------FN-GTKLDAV 184 (239)
T ss_dssp EEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCE--------ECTTT-------------------TT-TCEEEEE
T ss_pred EEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcc--------cCHhh-------------------cC-CCCCCEE
Confidence 9999999 998 67777799999999 99998864321 11111 11 1346666
Q ss_pred EccCCc-cccccchhhcCC-CCce---eee----cCCccccCCCCCCEEeccCC
Q 045166 154 ILSNNR-FDGAIPASIANL-KGLQ---FSG----RIPQQLAELTFLAFFNVSDN 198 (305)
Q Consensus 154 dLs~N~-l~g~~p~~~~~L-~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N 198 (305)
+|++|+ +++..+..+..+ ++|+ +++ .+|.. .+++|+.|+++++
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 666663 553334444444 4443 211 34443 5778999998876
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=3.4e-17 Score=149.85 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=34.7
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
+|++++|++++ +| +|+++++|++|++++|++++ +|..+ .+|++|++++|++++ +| .+ +++++|++|++++
T Consensus 135 ~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~--~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 135 YLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-EL--QNLPFLTAIYADN 204 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CC--TTCTTCCEEECCS
T ss_pred EEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cc--cCCCCCCEEECCC
Confidence 45555555553 44 35555555555555555554 34322 244444444444443 33 23 3444444444444
Q ss_pred Cccc
Q 045166 82 NRFT 85 (305)
Q Consensus 82 N~l~ 85 (305)
|+++
T Consensus 205 N~l~ 208 (454)
T 1jl5_A 205 NSLK 208 (454)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 4443
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=3.8e-18 Score=145.08 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=53.8
Q ss_pred EcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCc
Q 045166 4 LRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNR 83 (305)
Q Consensus 4 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~ 83 (305)
++++|.+++ ++ .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+ + ..+++|++|++++|+
T Consensus 25 ~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 25 NLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEELSVNRNR 96 (263)
T ss_dssp HHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEECCSSC
T ss_pred HhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEEECCCCc
Confidence 455566553 22 45666666666666666654 44 45666666666666666665332 4 566666666666666
Q ss_pred ccccCChhhhhCcccchhccCccc
Q 045166 84 FTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 84 l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
++ .+|. +.. ++|+.|++++|
T Consensus 97 l~-~l~~--~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 97 LK-NLNG--IPS-ACLSRLFLDNN 116 (263)
T ss_dssp CS-CCTT--CCC-SSCCEEECCSS
T ss_pred cC-CcCc--ccc-CcccEEEccCC
Confidence 66 4543 222 56666666654
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=1.8e-17 Score=155.11 Aligned_cols=175 Identities=18% Similarity=0.213 Sum_probs=128.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++ +|..+ +++|++|+|++|.|+. +| ..+++|++|++++|++++ +|. + .+ +|++|+++
T Consensus 62 ~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l--~~--~L~~L~Ls 128 (571)
T 3cvr_A 62 SELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-L--PA--SLKHLDVD 128 (571)
T ss_dssp SEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-C--CT--TCCEEECC
T ss_pred cEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-h--hc--CCCEEECC
Confidence 479999999986 77766 3889999999999995 88 567999999999999998 777 6 44 89999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|++++ +|. .+++|+.|++++|.... +|... ..+..+.+..+.+.. +....++|+.|||++|+|
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~--------lp~~l--~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM--------LPELP--TSLEVLSVRNNQLTF-LPELPESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC--------CCCCC--TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCC
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc--------CCCcC--CCcCEEECCCCCCCC-cchhhCCCCEEECcCCCC
Confidence 999994 885 57899999999865432 12111 112223333333222 111227899999999999
Q ss_pred ccccchhhcC-C-------CCceeee----cCCccccCCCCCCEEeccCCcceecCCC
Q 045166 161 DGAIPASIAN-L-------KGLQFSG----RIPQQLAELTFLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 161 ~g~~p~~~~~-L-------~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 206 (305)
+ .+|. +.. | ..|.+++ .+|..+..+++|++|+|++|++++.+|.
T Consensus 193 ~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 193 E-SLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp S-SCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred C-chhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 9 7777 543 3 3333333 6888888899999999999999988775
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.8e-17 Score=156.40 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=124.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.|++++|.+. .+| .+..+++|+.|+|++|.+++ +|. +..+++|+.|+|++|.+.+ +| .+ ..+++|+.|+|+
T Consensus 46 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l--~~l~~L~~L~Ls 117 (605)
T 1m9s_A 46 DQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SL--KDLKKLKSLSLE 117 (605)
T ss_dssp CCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TS--TTCTTCCEEECT
T ss_pred CEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hh--ccCCCCCEEEec
Confidence 45789999987 455 58999999999999999998 444 8899999999999999986 44 56 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|.++ .++ . +..+++|+.|++++|..... .....+++|+.|+|++|+|
T Consensus 118 ~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~l-----------------------------~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 118 HNGIS-DIN-G-LVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp TSCCC-CCG-G-GGGCTTCSEEECCSSCCCCC-----------------------------GGGGSCTTCSEEECCSSCC
T ss_pred CCCCC-CCc-c-ccCCCccCEEECCCCccCCc-----------------------------hhhcccCCCCEEECcCCcC
Confidence 99998 555 3 88899999999988643221 1122367888889999988
Q ss_pred ccccchhhcCCCCce---eee----cCCccccCCCCCCEEeccCCcceec
Q 045166 161 DGAIPASIANLKGLQ---FSG----RIPQQLAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~---l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ 203 (305)
++..| +..+++|+ +++ .+ +.+..+++|+.|+|++|++++.
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence 86555 66666665 222 23 3578899999999999999864
No 95
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=131.40 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=101.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+++++++|+++ .+|..+. ++|++|++++|+++. +|..|..+++|++|+|++|.+++..+..| .++++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f--~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSF--SNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHc--cCCCCCCEEECC
Confidence 36888999988 6776553 689999999999985 88888999999999999999988776777 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .+|...|.. +++|+.|+|++|+|
T Consensus 87 ~N~l~-~i~~~~f~~---------------------------------------------------l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 87 YNRLR-CIPPRTFDG---------------------------------------------------LKSLRLLSLHGNDI 114 (193)
T ss_dssp SSCCC-BCCTTTTTT---------------------------------------------------CTTCCEEECCSSCC
T ss_pred CCccC-EeCHHHhCC---------------------------------------------------CCCCCEEECCCCCC
Confidence 99998 455432332 55678888888888
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecC
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPI 204 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 204 (305)
+ .+|. ..|..+++|++|++++|++.+..
T Consensus 115 ~-~~~~---------------~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 115 S-VVPE---------------GAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp C-BCCT---------------TTTTTCTTCCEEECCSSCEECSG
T ss_pred C-eeCh---------------hhhhcCccccEEEeCCCCeecCC
Confidence 8 3332 24667888999999999887543
No 96
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.72 E-value=2.9e-17 Score=144.92 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=126.3
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++..+ + ..+++|++|+++
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~ 229 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIG 229 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECC
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--h--hcCCcCCEEEcc
Confidence 468888988875443 7888999999999998887 444 7788888888888888876543 4 678888888888
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccc-ccccccccccEEEccCCc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVM-TYNKIPNILAGIILSNNR 159 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~LdLs~N~ 159 (305)
+|.++ .++. +..+++|+.|++++|....... ....+ .+..+.+..+.+.. .....+++|+.|++++|+
T Consensus 230 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 230 NNKIT-DLSP--LANLSQLTWLEIGTNQISDINA--VKDLT------KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp SSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCT------TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCccC-CCcc--hhcCCCCCEEECCCCccCCChh--HhcCC------CcCEEEccCCccCCChhhcCCCCCCEEECcCCc
Confidence 88888 5553 7788888888888764332110 11111 12222222222221 223457899999999999
Q ss_pred cccccchhhcCCCCce--------eeecCCccccCCCCCCEEeccCCcce
Q 045166 160 FDGAIPASIANLKGLQ--------FSGRIPQQLAELTFLAFFNVSDNYLT 201 (305)
Q Consensus 160 l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~~L~~L~Ls~N~l~ 201 (305)
+++..|..+..+++|+ +++..| +..+++|++|++++|+++
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9988888888888776 344444 788999999999999986
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=4.9e-17 Score=138.14 Aligned_cols=144 Identities=16% Similarity=0.190 Sum_probs=118.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|+++ .+| .+..+++|++|++++|++++ +|. +..+++|++|++++|++++ +|... . ++|++|+++
T Consensus 44 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~---~-~~L~~L~L~ 114 (263)
T 1xeu_A 44 QNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIP---S-ACLSRLFLD 114 (263)
T ss_dssp SEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCC---C-SSCCEEECC
T ss_pred cEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccc---c-CcccEEEcc
Confidence 57999999998 566 78999999999999999998 555 9999999999999999987 55433 3 899999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .++ . +..+++|+.|++++|...+. .....+++|+.|+|++|++
T Consensus 115 ~N~l~-~~~-~-l~~l~~L~~L~Ls~N~i~~~-----------------------------~~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 115 NNELR-DTD-S-LIHLKNLEILSIRNNKLKSI-----------------------------VMLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SSCCS-BSG-G-GTTCTTCCEEECTTSCCCBC-----------------------------GGGGGCTTCCEEECTTSCC
T ss_pred CCccC-CCh-h-hcCcccccEEECCCCcCCCC-----------------------------hHHccCCCCCEEECCCCcC
Confidence 99999 565 3 88999999999998643221 0122378899999999999
Q ss_pred ccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceec
Q 045166 161 DGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGP 203 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 203 (305)
++. ..+..+++|+.|++++|++++.
T Consensus 163 ~~~------------------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT------------------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC------------------TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch------------------HHhccCCCCCEEeCCCCcccCC
Confidence 843 2467789999999999999865
No 98
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=9.1e-18 Score=132.82 Aligned_cols=142 Identities=16% Similarity=0.083 Sum_probs=107.0
Q ss_pred cCCCCCEEeccCcccc-cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCccc
Q 045166 20 NCSKLEFLGLGINQIS-DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNA 98 (305)
Q Consensus 20 ~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~ 98 (305)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+++.+|. .+..+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFGGLDM-LAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCSCCCH-HHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCchHHHH-HHhhCCC
Confidence 4578999999999998 56888888999999999999999875 556 7899999999999999965774 4777899
Q ss_pred chhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeee
Q 045166 99 MKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSG 178 (305)
Q Consensus 99 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g 178 (305)
|+.|++++|....... ......+++|+.|++++|.+++. |...
T Consensus 97 L~~L~Ls~N~l~~~~~--------------------------~~~l~~l~~L~~L~l~~N~l~~~-~~~~---------- 139 (168)
T 2ell_A 97 LTHLNLSGNKLKDIST--------------------------LEPLKKLECLKSLDLFNCEVTNL-NDYR---------- 139 (168)
T ss_dssp CCEEECBSSSCCSSGG--------------------------GGGGSSCSCCCEEECCSSGGGTS-TTHH----------
T ss_pred CCEEeccCCccCcchh--------------------------HHHHhcCCCCCEEEeeCCcCcch-HHHH----------
Confidence 9999988864322100 01223377899999999999833 3200
Q ss_pred cCCccccCCCCCCEEeccCCcceecCCC
Q 045166 179 RIPQQLAELTFLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 179 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 206 (305)
...+..+++|++|++++|.+. .+|.
T Consensus 140 --~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 140 --ESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp --HHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred --HHHHHhCccCcEecCCCCChh-hccc
Confidence 024678889999999999887 4443
No 99
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.1e-17 Score=133.78 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=79.7
Q ss_pred CEEEcccCccccccCh-hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPR-SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|++++|++++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+ .++++|++|++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L 109 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF--LGLHQLKTLNL 109 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS--TTCTTCCEEEC
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh--cCCCCCCEEEC
Confidence 4799999999966664 48999999999999999999889999999999999999999999887778 89999999999
Q ss_pred CCCcccccCCh
Q 045166 80 SDNRFTGKLPS 90 (305)
Q Consensus 80 s~N~l~g~lp~ 90 (305)
++|++++..|.
T Consensus 110 ~~N~l~~~~~~ 120 (192)
T 1w8a_A 110 YDNQISCVMPG 120 (192)
T ss_dssp CSSCCCEECTT
T ss_pred CCCcCCeeCHH
Confidence 99999976664
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=6.2e-17 Score=148.63 Aligned_cols=207 Identities=17% Similarity=0.174 Sum_probs=128.2
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+.|++++|.+. .+| .+..+++|++|++++|.+++ +|. +..+++|++|++++|.+++..+ + ..+++|++|+++
T Consensus 49 ~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~L~ 120 (466)
T 1o6v_A 49 TTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--L--ANLTNLTGLTLF 120 (466)
T ss_dssp CEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECC
T ss_pred cEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--h--cCCCCCCEEECC
Confidence 46788888877 455 37788888888888888887 444 7888888888888888876544 5 778888888888
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCC--------------ccc-cccccccccccCccc-ccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSN--------------VLG-TYDYSRTMNSKGRVM-TYN 144 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~-~~~ 144 (305)
+|.++ .+|. +..+++|++|++++|....... .+.++.- +.. ..+..+++..+.+.. ...
T Consensus 121 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l 195 (466)
T 1o6v_A 121 NNQIT-DIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 195 (466)
T ss_dssp SSCCC-CCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred CCCCC-CChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhh
Confidence 88888 5553 7788888888888764332110 1110000 000 011112222222111 112
Q ss_pred cccccccEEEccCCccccccchhhcCCCCce---eeec---CCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCcc
Q 045166 145 KIPNILAGIILSNNRFDGAIPASIANLKGLQ---FSGR---IPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSF 218 (305)
Q Consensus 145 ~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~---l~g~---ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~ 218 (305)
..+++|+.|++++|++++..| ++.+++|+ +++. -...+..+++|++|++++|++++..| ...+..+..+++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence 335677777777777775444 44444444 3321 11356778888888888888886555 445566777777
Q ss_pred CCCCC
Q 045166 219 DGNSG 223 (305)
Q Consensus 219 ~gNp~ 223 (305)
++|..
T Consensus 273 ~~n~l 277 (466)
T 1o6v_A 273 GANQI 277 (466)
T ss_dssp CSSCC
T ss_pred CCCcc
Confidence 77743
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=3.9e-18 Score=156.11 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=99.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCC-------------CEEEcccccceeeeCCCCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKL-------------NVLILRSNIFYGIIEEPRT 67 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~p~~~~ 67 (305)
++|++++|.+ |.+|++++++++|++|++++|.++|.+|..++.+.+| ++|++++|.+++ +|..
T Consensus 14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~-- 89 (454)
T 1jl5_A 14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL-- 89 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC--
T ss_pred hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC--
Confidence 4689999999 7999999999999999999999999999999988764 999999999886 4442
Q ss_pred CCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccc
Q 045166 68 SCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIP 147 (305)
Q Consensus 68 ~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (305)
.++|++|++++|.+++ +|.. +++|+.|++++|...+- +.++..+....+... ...+++ ....+
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n--~l~~lp--~~~~l 152 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNN--QLEKLP--ELQNS 152 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSS--CCSSCC--CCTTC
T ss_pred ---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-----cCCCCCCCEEECcCC--CCCCCc--ccCCC
Confidence 3678899999999984 7743 36788888877543321 112222221111111 111222 13345
Q ss_pred ccccEEEccCCccccccchhhcCCCCceeee----cCCccccCCCCCCEEeccCCccee
Q 045166 148 NILAGIILSNNRFDGAIPASIANLKGLQFSG----RIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 148 ~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
++|++|++++|+++ .+|..+.+|+.|.+++ .+| .+..+++|++|++++|++++
T Consensus 153 ~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 153 SFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp TTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCEEECCCCcCc-ccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence 66777777777776 3565555555555322 244 35666666666666666654
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=4.6e-17 Score=140.41 Aligned_cols=133 Identities=24% Similarity=0.252 Sum_probs=107.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..| +..+++|++|++++|.+++ +| .+..+++|++|++++|++++. + .+ ..+++|++|+++
T Consensus 71 ~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~-~l--~~l~~L~~L~l~ 142 (291)
T 1h6t_A 71 TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GL--VHLPQLESLYLG 142 (291)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-G-GG--GGCTTCCEEECC
T ss_pred CEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-h-hh--cCCCCCCEEEcc
Confidence 579999999996544 9999999999999999987 55 489999999999999999874 3 45 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|+++ .++ . +..+++|+.|++++|....... ...+++|+.|++++|++
T Consensus 143 ~n~l~-~~~-~-l~~l~~L~~L~L~~N~l~~~~~-----------------------------l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 143 NNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIVP-----------------------------LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp SSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCGG-----------------------------GTTCTTCCEEECCSSCC
T ss_pred CCcCC-cch-h-hccCCCCCEEEccCCccccchh-----------------------------hcCCCccCEEECCCCcC
Confidence 99999 554 3 8899999999999864322110 22377899999999999
Q ss_pred ccccchhhcCCCCce
Q 045166 161 DGAIPASIANLKGLQ 175 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~ 175 (305)
+ .+|. +..+++|+
T Consensus 191 ~-~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 191 S-DLRA-LAGLKNLD 203 (291)
T ss_dssp C-BCGG-GTTCTTCS
T ss_pred C-CChh-hccCCCCC
Confidence 8 4554 66666665
No 103
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=9.3e-17 Score=128.11 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=96.8
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF--DKLTKLTILYLHE 85 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCS
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc--cCCCccCEEECCC
Confidence 5788888887 556443 3688888888888887555567788888888888888887555556 7788888888888
Q ss_pred CcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccc
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFD 161 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~ 161 (305)
|+++ .+|...+.. +++|+.||+++|+++
T Consensus 86 N~l~-~~~~~~~~~---------------------------------------------------l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDK---------------------------------------------------LTQLKELALDTNQLK 113 (177)
T ss_dssp SCCC-CCCTTTTTT---------------------------------------------------CTTCCEEECCSSCCS
T ss_pred CCcc-ccCHHHhhC---------------------------------------------------CcccCEEECcCCcce
Confidence 8888 455432322 556888888888888
Q ss_pred cccchhhcCCCCceeeecCCccccCCCCCCEEeccCCcceecCC
Q 045166 162 GAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 162 g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 205 (305)
.+|. ..+..+++|++|++++|++++..|
T Consensus 114 -~~~~---------------~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 114 -SVPD---------------GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp -CCCT---------------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -EeCH---------------HHhcCCcccCEEEecCCCeeccCc
Confidence 3332 235678889999999999987766
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=2.6e-18 Score=150.90 Aligned_cols=189 Identities=17% Similarity=0.105 Sum_probs=113.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccC-cchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDT-FPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+ +.+++|++|++
T Consensus 73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L 149 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNL 149 (336)
T ss_dssp SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEEC
T ss_pred eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEEC
Confidence 3577888888766554 55688888888888888765 67777788888888888888877666666 67888888888
Q ss_pred CCC-ccccc-CChhhhhCcccchhccCccccccccc--ccCCCCcCCCccccccccccccccC--cc----ccccccccc
Q 045166 80 SDN-RFTGK-LPSNSFLCWNAMKIVNTSALRYLQDV--LFPYGQVSSNVLGTYDYSRTMNSKG--RV----MTYNKIPNI 149 (305)
Q Consensus 80 s~N-~l~g~-lp~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~ 149 (305)
++| .+++. ++ ..+..+++|++|++++|..+... .......+.. +..+.+..+. +. ......+++
T Consensus 150 ~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~-----L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 150 SGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET-----ITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp TTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT-----CCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred CCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC-----CCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 888 67643 44 33677888888888776222210 0000111101 1111222221 10 112223566
Q ss_pred ccEEEccCCc-cccccchhhcCCCCce---eeec--C-Cc---cccCCCCCCEEeccCC
Q 045166 150 LAGIILSNNR-FDGAIPASIANLKGLQ---FSGR--I-PQ---QLAELTFLAFFNVSDN 198 (305)
Q Consensus 150 L~~LdLs~N~-l~g~~p~~~~~L~~L~---l~g~--i-p~---~l~~l~~L~~L~Ls~N 198 (305)
|+.|++++|. +++..+..+.++++|+ +++. + +. .+.++++|++|++++|
T Consensus 224 L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7777777777 5656666666555555 3221 2 22 3566677777777766
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=1.5e-16 Score=150.40 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=33.6
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccccee
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG 60 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 60 (305)
++|+|++|+++ .+|. .+++|++|+|++|++++ +|. .+++|++|++++|.+++
T Consensus 64 ~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 64 TTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp SEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC
T ss_pred cEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC
Confidence 35777777776 4554 46677777777777765 554 55666666666666654
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=9.5e-19 Score=156.86 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=147.7
Q ss_pred CEEEcccCccccccC----hhhhcCCCCCEEeccCc---ccccCcchhh-------cCCCCCCEEEccccccee----ee
Q 045166 1 MFYLRNENTFLQRIP----RSLINCSKLEFLGLGIN---QISDTFPSWL-------GTLPKLNVLILRSNIFYG----II 62 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~~N~l~~----~~ 62 (305)
++|+|++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.++. .+
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 479999999987644 44678999999999996 4555566655 688999999999999986 45
Q ss_pred CCCCCCCCCCCccEEeCCCCcccccCChh---hhhCc---------ccchhccCcccccccccccCCCCcCCCccc-ccc
Q 045166 63 EEPRTSCGFSKLRIIDLSDNRFTGKLPSN---SFLCW---------NAMKIVNTSALRYLQDVLFPYGQVSSNVLG-TYD 129 (305)
Q Consensus 63 p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~---~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 129 (305)
|..+ ..+++|++|+|++|.+++..+.. .+..+ ++|++|++++|......... +...+.. ..+
T Consensus 115 ~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---l~~~l~~~~~L 189 (386)
T 2ca6_A 115 IDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE---WAKTFQSHRLL 189 (386)
T ss_dssp HHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH---HHHHHHHCTTC
T ss_pred HHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH---HHHHHHhCCCc
Confidence 6566 67889999999999997433322 13333 78999999886543111000 0000000 022
Q ss_pred ccccccccCccc--------ccccccccccEEEccCCccc----cccchhhcCCCCce---ee-----ec----CCcccc
Q 045166 130 YSRTMNSKGRVM--------TYNKIPNILAGIILSNNRFD----GAIPASIANLKGLQ---FS-----GR----IPQQLA 185 (305)
Q Consensus 130 ~~~~~~~~~~~~--------~~~~~~~~L~~LdLs~N~l~----g~~p~~~~~L~~L~---l~-----g~----ip~~l~ 185 (305)
..+.+..+.+.. .....+++|+.|+|++|.++ +.+|..+..+++|+ ++ +. +|..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 333344443331 13345788999999999996 57888887777776 32 22 456663
Q ss_pred --CCCCCCEEeccCCccee----cCCCCC--CCCccCCCccCCCCCCCC
Q 045166 186 --ELTFLAFFNVSDNYLTG----PIPQGK--QFATFDNTSFDGNSGLCG 226 (305)
Q Consensus 186 --~l~~L~~L~Ls~N~l~g----~ip~~~--~~~~l~~~~~~gNp~lc~ 226 (305)
.+++|++|+|++|++++ .+|... .++++..+++++|+.-..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 48999999999999987 466532 357777888888876543
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.1e-17 Score=161.38 Aligned_cols=124 Identities=19% Similarity=0.088 Sum_probs=91.1
Q ss_pred ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhh
Q 045166 13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNS 92 (305)
Q Consensus 13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~ 92 (305)
..|..+..+++|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..+ +.+++|++|||++|.|+ .+|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~Ls~N~l~-~lp~~- 288 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEI--KNLSNLRVLDLSHNRLT-SLPAE- 288 (727)
T ss_dssp -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGG--GGGTTCCEEECTTSCCS-SCCSS-
T ss_pred cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhh--hCCCCCCEEeCcCCcCC-ccChh-
Confidence 447778888889999999998884 7877888888999999999888 678777 78888999999999988 88866
Q ss_pred hhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcC
Q 045166 93 FLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIAN 170 (305)
Q Consensus 93 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~ 170 (305)
++.+++|++|++++|.+. .+|.. +..+++|+.|+|++|.|++.+|..+..
T Consensus 289 ~~~l~~L~~L~L~~N~l~--------~lp~~--------------------~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVT--------TLPWE--------------------FGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GGGGTTCSEEECCSSCCC--------CCCSS--------------------TTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred hcCCCCCCEEECCCCCCC--------ccChh--------------------hhcCCCccEEeCCCCccCCCChHHHhh
Confidence 788888888888886321 12221 123677888888888888777777654
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=5.5e-17 Score=125.66 Aligned_cols=133 Identities=18% Similarity=0.100 Sum_probs=93.4
Q ss_pred CCCCCEEeccCcccc-cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccc
Q 045166 21 CSKLEFLGLGINQIS-DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAM 99 (305)
Q Consensus 21 l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L 99 (305)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ +.+++|++|++++|.+++.+|. .+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSGGLEV-LAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC--CCCTTCCEEECCSSCCCSCTHH-HHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh--hcCCCCCEEECCCCcccchHHH-HhhhCCCC
Confidence 467899999999998 66888888899999999999998875 556 7889999999999999855664 46677788
Q ss_pred hhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeec
Q 045166 100 KIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGR 179 (305)
Q Consensus 100 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ 179 (305)
++|++++|...... .......+++|+.|++++|.+++..+..
T Consensus 91 ~~L~ls~N~i~~~~--------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~------------ 132 (149)
T 2je0_A 91 THLNLSGNKIKDLS--------------------------TIEPLKKLENLKSLDLFNCEVTNLNDYR------------ 132 (149)
T ss_dssp CEEECTTSCCCSHH--------------------------HHGGGGGCTTCCEEECTTCGGGGSTTHH------------
T ss_pred CEEECCCCcCCChH--------------------------HHHHHhhCCCCCEEeCcCCcccchHHHH------------
Confidence 88877775322100 0011223677888888888887432200
Q ss_pred CCccccCCCCCCEEeccC
Q 045166 180 IPQQLAELTFLAFFNVSD 197 (305)
Q Consensus 180 ip~~l~~l~~L~~L~Ls~ 197 (305)
+..+..+++|++||+++
T Consensus 133 -~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 133 -ENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -HHHHHHCTTCCEETTBC
T ss_pred -HHHHHHCCCcccccCCC
Confidence 02356677777777763
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=3.9e-18 Score=152.86 Aligned_cols=206 Identities=12% Similarity=0.057 Sum_probs=132.9
Q ss_pred ccChhhhcCCCCCEEeccCcccccCcch----hhcCCCCCCEEEccccc---ceeeeCCCCC-----CCCCCCccEEeCC
Q 045166 13 RIPRSLINCSKLEFLGLGINQISDTFPS----WLGTLPKLNVLILRSNI---FYGIIEEPRT-----SCGFSKLRIIDLS 80 (305)
Q Consensus 13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~---l~~~~p~~~~-----~~~l~~L~~L~Ls 80 (305)
.++..+..+++|++|+|++|.++...+. .+..+++|++|+|++|. +++.+|..+. +..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 5778889999999999999999876443 46689999999999964 4444443220 1478999999999
Q ss_pred CCcccc----cCChhhhhCcccchhccCcccccccccccCCCCcCCCccc----------cccccccccccCccc-----
Q 045166 81 DNRFTG----KLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLG----------TYDYSRTMNSKGRVM----- 141 (305)
Q Consensus 81 ~N~l~g----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~----- 141 (305)
+|.+.+ .+|.. +..+++|+.|++++|........ .++..+.. ..+..+.+..+.+..
T Consensus 103 ~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAGA---KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp SCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHHH---HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred CCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHHH---HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 999996 36644 78899999999999754211000 00000000 112233333333321
Q ss_pred --ccccccccccEEEccCCcccc-----ccchhhcCCCCce---ee---------ecCCccccCCCCCCEEeccCCccee
Q 045166 142 --TYNKIPNILAGIILSNNRFDG-----AIPASIANLKGLQ---FS---------GRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 142 --~~~~~~~~L~~LdLs~N~l~g-----~~p~~~~~L~~L~---l~---------g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
.....+++|+.|+|++|+++. .+|..+..+++|+ ++ +.+|..+..+++|++|+|++|++++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 112236678888888888872 3443666655555 22 3456777888888888888888876
Q ss_pred c----CCCC---CCCCccCCCccCCCC
Q 045166 203 P----IPQG---KQFATFDNTSFDGNS 222 (305)
Q Consensus 203 ~----ip~~---~~~~~l~~~~~~gNp 222 (305)
. +|.. ....++..+++++|.
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 4 3332 225566666677764
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=7.4e-17 Score=131.03 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=119.4
Q ss_pred hhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcc
Q 045166 18 LINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWN 97 (305)
Q Consensus 18 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~ 97 (305)
...+++|+.|++++|.++. +| .+..+++|++|++++|.++. +..+ ..+++|++|++++|.+++..|.. +..++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l--~~l~~L~~L~l~~n~l~~~~~~~-l~~l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPI--SGLSNLERLRIMGKDVTSDKIPN-LSGLT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGG--TTCTTCCEEEEECTTCBGGGSCC-CTTCT
T ss_pred hhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhh--hcCCCCCEEEeECCccCcccChh-hcCCC
Confidence 4678899999999999985 77 68999999999999997764 3356 78999999999999999766755 88899
Q ss_pred cchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCc-cccccchhhcCCCCcee
Q 045166 98 AMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNR-FDGAIPASIANLKGLQF 176 (305)
Q Consensus 98 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~g~~p~~~~~L~~L~l 176 (305)
+|+.|++++|...... ......+++|+.|++++|+ ++ .+|
T Consensus 113 ~L~~L~Ls~n~i~~~~---------------------------~~~l~~l~~L~~L~L~~n~~i~-~~~----------- 153 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSI---------------------------LTKINTLPKVNSIDLSYNGAIT-DIM----------- 153 (197)
T ss_dssp TCCEEECCSSBCBGGG---------------------------HHHHTTCSSCCEEECCSCTBCC-CCG-----------
T ss_pred CCCEEEecCCccCcHh---------------------------HHHHhhCCCCCEEEccCCCCcc-ccH-----------
Confidence 9999999886433211 1122337889999999998 55 433
Q ss_pred eecCCccccCCCCCCEEeccCCcceecCCCCCCCCccCCCccCCCCC
Q 045166 177 SGRIPQQLAELTFLAFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 177 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~l~~~~~~gNp~ 223 (305)
.+..+++|++|++++|++++ ++....+.++..+++.||+.
T Consensus 154 ------~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 154 ------PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ------GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC--
T ss_pred ------hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCccc
Confidence 36788999999999999986 44555677788888888863
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=3.1e-18 Score=152.28 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=66.4
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcc----hhhcCCC-CCCEEEcccccceeeeCCCCCCCCC-----
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFP----SWLGTLP-KLNVLILRSNIFYGIIEEPRTSCGF----- 71 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~l----- 71 (305)
+++++.|.+++.+|..+...++|++|++++|.+++..+ +.+..++ +|++|+|++|.+++..+..+ +.+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL--VQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH--HHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH--HHHHhccC
Confidence 56677777777777666666667777777777776544 5566666 67777777777765444433 332
Q ss_pred CCccEEeCCCCcccccCChh---hhhCc-ccchhccCcccc
Q 045166 72 SKLRIIDLSDNRFTGKLPSN---SFLCW-NAMKIVNTSALR 108 (305)
Q Consensus 72 ~~L~~L~Ls~N~l~g~lp~~---~~~~l-~~L~~L~l~~~~ 108 (305)
++|++|++++|.+++..+.. .+..+ ++|+.|++++|.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 66777777777776443332 12223 667777777654
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=7.8e-16 Score=145.57 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=68.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|+|++|++++ +|. .+++|++|+++
T Consensus 43 ~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls 109 (622)
T 3g06_A 43 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV-----LPPGLLELSIF 109 (622)
T ss_dssp CEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC-----CCTTCCEEEEC
T ss_pred cEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC-----CCCCCCEEECc
Confidence 47899999998 7787665 899999999999986 776 67899999999999985 554 35778888888
Q ss_pred CCcccccCChhhhhCcccchhccCccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
+|+++ .+|. .+++|+.|++++|
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N 131 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGN 131 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSS
T ss_pred CCcCC-CCCC----CCCCcCEEECCCC
Confidence 88887 5664 3455566665554
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2e-17 Score=159.51 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=113.0
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|+.+++|++|+|++|.++ .+|..+ +.+++|++|+|+
T Consensus 227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~L~ 301 (727)
T 4b8c_D 227 HALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GSCFQLKYFYFF 301 (727)
T ss_dssp CEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GGGTTCSEEECC
T ss_pred cEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cCCCCCCEEECC
Confidence 47999999998 88888889999999999999999 59999999999999999999999 679888 899999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|.|+ .+|.. |+.+++|+.|++++|.+.+.. |..+.. .......++|++|.+
T Consensus 302 ~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~-------p~~~~~-------------------~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 302 DNMVT-TLPWE-FGNLCNLQFLGVEGNPLEKQF-------LKILTE-------------------KSVTGLIFYLRDNRP 353 (727)
T ss_dssp SSCCC-CCCSS-TTSCTTCCCEECTTSCCCSHH-------HHHHHH-------------------HHHHHHHHHHHHCCC
T ss_pred CCCCC-ccChh-hhcCCCccEEeCCCCccCCCC-------hHHHhh-------------------cchhhhHHhhccCcc
Confidence 99998 89987 999999999999997543211 110000 001122366777777
Q ss_pred ccccchhhcCCCCc------e----eeecCCccccCCCCCCEEeccCCcceecCC
Q 045166 161 DGAIPASIANLKGL------Q----FSGRIPQQLAELTFLAFFNVSDNYLTGPIP 205 (305)
Q Consensus 161 ~g~~p~~~~~L~~L------~----l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 205 (305)
+|.+|..+..+.-- . +.+..+..+.++..+....+++|-+.+...
T Consensus 354 ~~~~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 354 EIPLPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp CCCCCCC-----------------------------------------CCCGGGC
T ss_pred cCcCccccceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 77777766544211 1 333344455667778888899998865433
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=4.8e-16 Score=146.73 Aligned_cols=133 Identities=24% Similarity=0.253 Sum_probs=105.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..| +..+++|+.|+|++|.+++ +| .+..+++|++|+|++|.+.+. + .+ ..+++|+.|+|+
T Consensus 68 ~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~-~l--~~l~~L~~L~Ls 139 (605)
T 1m9s_A 68 TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI-N-GL--VHLPQLESLYLG 139 (605)
T ss_dssp CEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC-G-GG--GGCTTCSEEECC
T ss_pred CEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC-c-cc--cCCCccCEEECC
Confidence 579999999996554 9999999999999999987 55 789999999999999999873 3 45 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCcc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRF 160 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l 160 (305)
+|.++ .++ . +..+++|+.|++++|....... ...+++|+.|+|++|+|
T Consensus 140 ~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~~~~-----------------------------l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 140 NNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIVP-----------------------------LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp SSCCC-CCG-G-GGSCTTCSEEECCSSCCCCCGG-----------------------------GTTCTTCCEEECCSSCC
T ss_pred CCccC-Cch-h-hcccCCCCEEECcCCcCCCchh-----------------------------hccCCCCCEEECcCCCC
Confidence 99999 453 3 8999999999999864332111 12367788888888888
Q ss_pred ccccchhhcCCCCce
Q 045166 161 DGAIPASIANLKGLQ 175 (305)
Q Consensus 161 ~g~~p~~~~~L~~L~ 175 (305)
++ +| .+..+++|+
T Consensus 188 ~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 188 SD-LR-ALAGLKNLD 200 (605)
T ss_dssp CB-CG-GGTTCTTCS
T ss_pred CC-Ch-HHccCCCCC
Confidence 74 33 466666555
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=2.3e-17 Score=144.82 Aligned_cols=199 Identities=20% Similarity=0.120 Sum_probs=139.2
Q ss_pred CEEEcccCccccc-cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccc-cceee-eCCCCCCCCCCCccEE
Q 045166 1 MFYLRNENTFLQR-IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSN-IFYGI-IEEPRTSCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~~l~~L~~L 77 (305)
++|++++|.+++. +|..+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. ++..+ ..+++|++|
T Consensus 96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~--~~~~~L~~L 173 (336)
T 2ast_B 96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL--SSCSRLDEL 173 (336)
T ss_dssp CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH--HHCTTCCEE
T ss_pred CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH--hcCCCCCEE
Confidence 5799999999866 8889999999999999999999888889999999999999999 67652 55545 678999999
Q ss_pred eCCCC-ccccc-CChhhhhCcc-cchhccCcccc-cccccccCCCCcCCCccc-cccccccccccC-cc---cccccccc
Q 045166 78 DLSDN-RFTGK-LPSNSFLCWN-AMKIVNTSALR-YLQDVLFPYGQVSSNVLG-TYDYSRTMNSKG-RV---MTYNKIPN 148 (305)
Q Consensus 78 ~Ls~N-~l~g~-lp~~~~~~l~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---~~~~~~~~ 148 (305)
++++| .+++. ++ ..+..++ +|++|++++|. .+.... ++..+.. ..+..+++..+. +. ......++
T Consensus 174 ~l~~~~~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 174 NLSWCFDFTEKHVQ-VAVAHVSETITQLNLSGYRKNLQKSD-----LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp ECCCCTTCCHHHHH-HHHHHSCTTCCEEECCSCGGGSCHHH-----HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred cCCCCCCcChHHHH-HHHHhcccCCCEEEeCCCcccCCHHH-----HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 99999 99854 45 4478889 99999999874 221100 0100000 012223333333 11 22334478
Q ss_pred cccEEEccCCc-cccccchhhcCCCCce---eeecCCc-cccCC-CCCCEEeccCCcceecCCCC
Q 045166 149 ILAGIILSNNR-FDGAIPASIANLKGLQ---FSGRIPQ-QLAEL-TFLAFFNVSDNYLTGPIPQG 207 (305)
Q Consensus 149 ~L~~LdLs~N~-l~g~~p~~~~~L~~L~---l~g~ip~-~l~~l-~~L~~L~Ls~N~l~g~ip~~ 207 (305)
+|+.|++++|. +.......+.++++|+ +.|.+++ .+..+ .++..|++++|++++..|..
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 99999999995 3322222455555555 7777766 34444 34778889999999988864
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=125.86 Aligned_cols=105 Identities=24% Similarity=0.304 Sum_probs=96.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|+++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..+ .++++|++|+|+
T Consensus 34 ~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f--~~l~~L~~L~L~ 110 (193)
T 2wfh_A 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF--DGLKSLRLLSLH 110 (193)
T ss_dssp CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECC
T ss_pred CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh--CCCCCCCEEECC
Confidence 47999999998 788999999999999999999999777889999999999999999998877778 899999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|+++ .+|...|..+++|+.|++++|.+
T Consensus 111 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDIS-VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence 99999 78877799999999999998644
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.3e-18 Score=160.46 Aligned_cols=154 Identities=19% Similarity=0.115 Sum_probs=90.2
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcc-------------cccCcchhhcCCCCCC-------------------
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-------------ISDTFPSWLGTLPKLN------------------- 49 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~------------------- 49 (305)
.|+|++|+++ .+|+.+++|++|+.|++++|. +.+..|..++.+++|+
T Consensus 353 ~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~ 431 (567)
T 1dce_A 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431 (567)
T ss_dssp SCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred eccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhh
Confidence 5788899987 789999999999999987775 4555565555544444
Q ss_pred -------------EEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccC
Q 045166 50 -------------VLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFP 116 (305)
Q Consensus 50 -------------~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 116 (305)
+|+|++|.+++ +|. + +.+++|+.|+|++|.++ .+|.. ++.+++|+.|++++|...+
T Consensus 432 ~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~--~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~----- 500 (567)
T 1dce_A 432 ENSVLKMEYADVRVLHLAHKDLTV-LCH-L--EQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN----- 500 (567)
T ss_dssp HHHHHHHHHTTCSEEECTTSCCSS-CCC-G--GGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-----
T ss_pred cccccccCccCceEEEecCCCCCC-CcC-c--cccccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-----
Confidence 44455554443 333 3 44445555555555554 44433 4444455555444432111
Q ss_pred CCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecC-CccccCCCCCCEEec
Q 045166 117 YGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRI-PQQLAELTFLAFFNV 195 (305)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~i-p~~l~~l~~L~~L~L 195 (305)
+| ....+++|+.|||++|+|++ .. |..+..+++|++|+|
T Consensus 501 ---lp---------------------~l~~l~~L~~L~Ls~N~l~~----------------~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 501 ---VD---------------------GVANLPRLQELLLCNNRLQQ----------------SAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp ---CG---------------------GGTTCSSCCEEECCSSCCCS----------------SSTTGGGGGCTTCCEEEC
T ss_pred ---Cc---------------------ccCCCCCCcEEECCCCCCCC----------------CCCcHHHhcCCCCCEEEe
Confidence 00 01114445555555555442 22 566778888999999
Q ss_pred cCCcceecCCCC
Q 045166 196 SDNYLTGPIPQG 207 (305)
Q Consensus 196 s~N~l~g~ip~~ 207 (305)
++|++++.+|..
T Consensus 541 ~~N~l~~~~~~~ 552 (567)
T 1dce_A 541 QGNSLCQEEGIQ 552 (567)
T ss_dssp TTSGGGGSSSCT
T ss_pred cCCcCCCCccHH
Confidence 999988776643
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=6.7e-17 Score=143.66 Aligned_cols=217 Identities=11% Similarity=0.020 Sum_probs=133.7
Q ss_pred CEEEcccCccccccC----hhhhcCC-CCCEEeccCcccccCcchhhcCC-----CCCCEEEcccccceeeeCCCCC--C
Q 045166 1 MFYLRNENTFLQRIP----RSLINCS-KLEFLGLGINQISDTFPSWLGTL-----PKLNVLILRSNIFYGIIEEPRT--S 68 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~--~ 68 (305)
++|||++|.+++..+ ..|..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+. +
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 579999999997666 7788898 89999999999998777777764 9999999999999875544320 0
Q ss_pred CCC-CCccEEeCCCCcccccCChhhhh----C-cccchhccCcccccccccccC----CCCcCCCccccccccccccccC
Q 045166 69 CGF-SKLRIIDLSDNRFTGKLPSNSFL----C-WNAMKIVNTSALRYLQDVLFP----YGQVSSNVLGTYDYSRTMNSKG 138 (305)
Q Consensus 69 ~~l-~~L~~L~Ls~N~l~g~lp~~~~~----~-l~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 138 (305)
..+ ++|++|++++|.+++ .+...+. . .++|++|++++|......... ....+. .+..+++..+.
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~-----~L~~L~Ls~n~ 178 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA-----NVNSLNLRGNN 178 (362)
T ss_dssp HTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT-----TCCEEECTTSC
T ss_pred HhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc-----cccEeeecCCC
Confidence 334 789999999999984 4433333 3 258999999986543211000 001111 12223333333
Q ss_pred ccccc-------cccc-ccccEEEccCCccccc----cchhhcC----CCCceeee-----c----CCccccCCCCCCEE
Q 045166 139 RVMTY-------NKIP-NILAGIILSNNRFDGA----IPASIAN----LKGLQFSG-----R----IPQQLAELTFLAFF 193 (305)
Q Consensus 139 ~~~~~-------~~~~-~~L~~LdLs~N~l~g~----~p~~~~~----L~~L~l~g-----~----ip~~l~~l~~L~~L 193 (305)
+.... .... ++|+.|||++|++++. ++..+.. |+.|.+++ . +...+..+++|++|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 32211 1112 4788888888888752 4444432 33333332 1 11234566777888
Q ss_pred eccCCcceecCCC--------CCCCCccCCCccCCCCC
Q 045166 194 NVSDNYLTGPIPQ--------GKQFATFDNTSFDGNSG 223 (305)
Q Consensus 194 ~Ls~N~l~g~ip~--------~~~~~~l~~~~~~gNp~ 223 (305)
++++|.+++..+. .....++..+++++|+.
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 8887774432221 13445566667777764
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=9e-16 Score=121.25 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=101.3
Q ss_pred CCCCCCEEEcccccce-eeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCC
Q 045166 44 TLPKLNVLILRSNIFY-GIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122 (305)
Q Consensus 44 ~l~~L~~L~L~~N~l~-~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 122 (305)
..++|++|++++|.++ +.+|..+ ..+++|++|++++|.+++ ++ . +..+++|+.|++++|......
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~Ls~N~l~~~~--------- 87 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINVGLIS-VS-N-LPKLPKLKKLELSENRIFGGL--------- 87 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESSCCCC-CS-S-CCCCSSCCEEEEESCCCCSCC---------
T ss_pred CcccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCCCCCC-hh-h-hccCCCCCEEECcCCcCchHH---------
Confidence 4588999999999998 6788887 889999999999999994 43 3 889999999999986443211
Q ss_pred CccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
......+++|+.|+|++|++++ +|. +..+..+++|++|++++|++++
T Consensus 88 ------------------~~~~~~l~~L~~L~Ls~N~l~~-~~~--------------~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 88 ------------------DMLAEKLPNLTHLNLSGNKLKD-IST--------------LEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp ------------------CHHHHHCTTCCEEECBSSSCCS-SGG--------------GGGGSSCSCCCEEECCSSGGGT
T ss_pred ------------------HHHHhhCCCCCEEeccCCccCc-chh--------------HHHHhcCCCCCEEEeeCCcCcc
Confidence 1122237889999999999983 321 1456789999999999999996
Q ss_pred cCC----CCCCCCccCCCccCCCCC
Q 045166 203 PIP----QGKQFATFDNTSFDGNSG 223 (305)
Q Consensus 203 ~ip----~~~~~~~l~~~~~~gNp~ 223 (305)
..+ ....++.+..+++.+|..
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETTS
T ss_pred hHHHHHHHHHhCccCcEecCCCCCh
Confidence 655 235567777777777753
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1e-15 Score=121.94 Aligned_cols=142 Identities=9% Similarity=0.025 Sum_probs=106.9
Q ss_pred hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhC
Q 045166 16 RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLC 95 (305)
Q Consensus 16 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~ 95 (305)
..+.++.+|+.|++++|+++. +|......++|++|++++|.+++. ..+ ..+++|++|++++|.++ .+|..++..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~-~~~~~~~~~ 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC-RIGEGLDQA 86 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC-EECSCHHHH
T ss_pred HhcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc-ccCcchhhc
Confidence 356789999999999999996 665333344999999999999975 466 88999999999999999 677676789
Q ss_pred cccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCce
Q 045166 96 WNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQ 175 (305)
Q Consensus 96 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~ 175 (305)
+++|+.|++++|.... .. . ......+++|+.|++++|.++ .+|..-
T Consensus 87 l~~L~~L~L~~N~i~~-~~-------~------------------~~~l~~l~~L~~L~l~~N~i~-~~~~~~------- 132 (176)
T 1a9n_A 87 LPDLTELILTNNSLVE-LG-------D------------------LDPLASLKSLTYLCILRNPVT-NKKHYR------- 132 (176)
T ss_dssp CTTCCEEECCSCCCCC-GG-------G------------------GGGGGGCTTCCEEECCSSGGG-GSTTHH-------
T ss_pred CCCCCEEECCCCcCCc-ch-------h------------------hHhhhcCCCCCEEEecCCCCC-CcHhHH-------
Confidence 9999999998864321 10 0 011223778999999999998 444320
Q ss_pred eeecCCccccCCCCCCEEeccCCccee
Q 045166 176 FSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 176 l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
...+..+++|++||++.|....
T Consensus 133 -----~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 133 -----LYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp -----HHHHHHCTTCSEETTEECCHHH
T ss_pred -----HHHHHHCCccceeCCCcCCHHH
Confidence 0136778899999999998763
No 121
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=2e-15 Score=119.58 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=91.4
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+++|+++|+++ .+|..+ .++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+ .++++|++|+|+
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF--DKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhc--cCCCCCCEEECC
Confidence 46899999998 577766 3899999999999999778889999999999999999998766667 889999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|+++ .+|...|..+++|+.|++++|.+
T Consensus 87 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLK-SIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccC-EeCHHHhcCCCCCCEEEeCCCCC
Confidence 99999 67766799999999999998644
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.6e-15 Score=119.65 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=94.8
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+ ..+++|++|+++
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~ 108 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF--DKLTQLKELALD 108 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh--hCCcccCEEECc
Confidence 479999999997777788999999999999999998666678999999999999999998766667 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYL 110 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~ 110 (305)
+|+++ .+|...+..+++|+.|++++|.+.
T Consensus 109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 99999 777777889999999999987543
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=2.9e-15 Score=119.14 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=91.1
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+++++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+ .++++|++|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF--DKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh--CCcchhhEEECC
Confidence 36899999997 7887664 899999999999999778899999999999999999998655556 789999999999
Q ss_pred CCcccccCChhhhhCcccchhccCccccc
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
+|+++ .+|...+..+++|+.|++++|.+
T Consensus 90 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 90 DNHLK-SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred CCccc-eeCHHHhccccCCCEEEeCCCCc
Confidence 99999 67777799999999999998644
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=4.5e-15 Score=139.17 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=69.2
Q ss_pred CCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhcc
Q 045166 24 LEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVN 103 (305)
Q Consensus 24 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~ 103 (305)
|+.|++++|.+++ +|. ++.+++|++|+|++|.++ .+|..+ +.+++|+.|+|++|+++ .+| . ++.+++|+.|+
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~Ls~N~l~-~lp-~-l~~l~~L~~L~ 514 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL--AALRCLEVLQASDNALE-NVD-G-VANLPRLQELL 514 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG--GGCTTCCEEECCSSCCC-CCG-G-GTTCSSCCEEE
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh--hcCCCCCEEECCCCCCC-CCc-c-cCCCCCCcEEE
Confidence 5556666666655 454 555566666666666655 345555 55556666666666665 355 3 55556666665
Q ss_pred CcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCcc
Q 045166 104 TSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQ 183 (305)
Q Consensus 104 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~ 183 (305)
+++|...+.. .+.....+++|+.|+|++|.|++..|. + ...
T Consensus 515 Ls~N~l~~~~--------------------------~p~~l~~l~~L~~L~L~~N~l~~~~~~-~------------~~l 555 (567)
T 1dce_A 515 LCNNRLQQSA--------------------------AIQPLVSCPRLVLLNLQGNSLCQEEGI-Q------------ERL 555 (567)
T ss_dssp CCSSCCCSSS--------------------------TTGGGGGCTTCCEEECTTSGGGGSSSC-T------------THH
T ss_pred CCCCCCCCCC--------------------------CcHHHhcCCCCCEEEecCCcCCCCccH-H------------HHH
Confidence 5554322110 001112267788899999999854432 1 122
Q ss_pred ccCCCCCCEEec
Q 045166 184 LAELTFLAFFNV 195 (305)
Q Consensus 184 l~~l~~L~~L~L 195 (305)
+..+++|+.||+
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 344677777764
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=4.1e-15 Score=131.52 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=126.7
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcch-hhcCCCCCCE-EEcccccceeeeCCCCCCCCCCCccEEe
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPS-WLGTLPKLNV-LILRSNIFYGIIEEPRTSCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~-L~L~~N~l~~~~p~~~~~~~l~~L~~L~ 78 (305)
++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|. .|.+++++++ ++++.|+++...|..+ ..+++|++|+
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f--~~l~~L~~L~ 110 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLL 110 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB--CCCTTCCEEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh--hhcccccccc
Confidence 4799999999965566899999999999999999776665 5788988775 6677899998778878 8999999999
Q ss_pred CCCCcccccCChhhhhCcccchhccCccccccccccc-C-----------------CCCcCCCcccc-cccccccc----
Q 045166 79 LSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLF-P-----------------YGQVSSNVLGT-YDYSRTMN---- 135 (305)
Q Consensus 79 Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-~-----------------~~~~~~~~~~~-~~~~~~~~---- 135 (305)
+++|+++ .+|...+....++..+++.+++.+..... . ...++...+.. .+..+.+.
T Consensus 111 l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 9999998 56654455566666666654322221110 0 01111111110 11111111
Q ss_pred ccCcccccccccccccEEEccCCccccccc-hhhcCCCCcee-----eecCCccccCCCCCCEEeccCCc
Q 045166 136 SKGRVMTYNKIPNILAGIILSNNRFDGAIP-ASIANLKGLQF-----SGRIPQQLAELTFLAFFNVSDNY 199 (305)
Q Consensus 136 ~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p-~~~~~L~~L~l-----~g~ip~~l~~l~~L~~L~Ls~N~ 199 (305)
...++...+..+++|+.|||++|+|+ .+| ..+.+|+.|+. ...+| .+.++++|+.++++++.
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred ccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 12233334455778888888888888 444 45666666662 22455 36777788888877643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.5e-15 Score=117.53 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=89.0
Q ss_pred CCCCCCEEEcccccce-eeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCcccchhccCcccccccccccCCCCcCC
Q 045166 44 TLPKLNVLILRSNIFY-GIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSS 122 (305)
Q Consensus 44 ~l~~L~~L~L~~N~l~-~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 122 (305)
..++|+.|++++|.++ +.+|..+ ..+++|++|++++|.+++ + ..+..+++|+.|++++|......
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~--------- 80 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGL--------- 80 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCC--TTCTTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCT---------
T ss_pred CCccCeEEEccCCcCChhHHHHHH--hhcCCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchH---------
Confidence 3478999999999998 6788877 889999999999999994 4 33888999999999886433211
Q ss_pred CccccccccccccccCcccccccccccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 123 NVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
......+++|+.||+++|++++ +| .|..+..+++|++|++++|++++
T Consensus 81 ------------------~~~~~~l~~L~~L~ls~N~i~~-~~--------------~~~~~~~l~~L~~L~l~~N~l~~ 127 (149)
T 2je0_A 81 ------------------EVLAEKCPNLTHLNLSGNKIKD-LS--------------TIEPLKKLENLKSLDLFNCEVTN 127 (149)
T ss_dssp ------------------HHHHHHCTTCCEEECTTSCCCS-HH--------------HHGGGGGCTTCCEEECTTCGGGG
T ss_pred ------------------HHHhhhCCCCCEEECCCCcCCC-hH--------------HHHHHhhCCCCCEEeCcCCcccc
Confidence 1122236789999999999984 22 12456788999999999999997
Q ss_pred cCC
Q 045166 203 PIP 205 (305)
Q Consensus 203 ~ip 205 (305)
..+
T Consensus 128 ~~~ 130 (149)
T 2je0_A 128 LND 130 (149)
T ss_dssp STT
T ss_pred hHH
Confidence 654
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=8.1e-15 Score=137.10 Aligned_cols=157 Identities=20% Similarity=0.212 Sum_probs=111.2
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|+|+ .+| ..+++|++|++++|+|++ +|. +.. +|++|+|++|++++ +|. .+++|++|+++
T Consensus 83 ~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls 148 (571)
T 3cvr_A 83 TVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-----LPALLEYINAD 148 (571)
T ss_dssp SEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC-----CCTTCCEEECC
T ss_pred CEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC-----cCccccEEeCC
Confidence 47899999998 677 557899999999999998 777 655 89999999999987 555 36889999999
Q ss_pred CCcccccCChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccc-------cEE
Q 045166 81 DNRFTGKLPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNIL-------AGI 153 (305)
Q Consensus 81 ~N~l~g~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-------~~L 153 (305)
+|.++ .+|. .+++|+.|++++|.... +|. +. ..+..+++..+.+.. +.....+| +.|
T Consensus 149 ~N~l~-~lp~----~l~~L~~L~Ls~N~L~~--------lp~-l~-~~L~~L~Ls~N~L~~-lp~~~~~L~~~~~~L~~L 212 (571)
T 3cvr_A 149 NNQLT-MLPE----LPTSLEVLSVRNNQLTF--------LPE-LP-ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFF 212 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSC--------CCC-CC-TTCCEEECCSSCCSS-CCCCC--------CCEEE
T ss_pred CCccC-cCCC----cCCCcCEEECCCCCCCC--------cch-hh-CCCCEEECcCCCCCc-hhhHHHhhhcccccceEE
Confidence 99998 4775 46788999998865432 111 11 223333344443331 11122256 999
Q ss_pred EccCCccccccchhhcCCCCce--------eeecCCccccCCC
Q 045166 154 ILSNNRFDGAIPASIANLKGLQ--------FSGRIPQQLAELT 188 (305)
Q Consensus 154 dLs~N~l~g~~p~~~~~L~~L~--------l~g~ip~~l~~l~ 188 (305)
+|++|+|+ .+|..+.++++|+ +++.+|..+..+.
T Consensus 213 ~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 99999999 7898888888877 6667777766543
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=1.8e-16 Score=145.01 Aligned_cols=105 Identities=12% Similarity=-0.027 Sum_probs=65.9
Q ss_pred CEEEcccCccccc----cChhhhcCCCCCEEeccCcccccCcchhhc-----CCCCCCEEEcccccceee----eCCCCC
Q 045166 1 MFYLRNENTFLQR----IPRSLINCSKLEFLGLGINQISDTFPSWLG-----TLPKLNVLILRSNIFYGI----IEEPRT 67 (305)
Q Consensus 1 ~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~ 67 (305)
++|++++|++++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++.. ++..+
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l- 223 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV- 223 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH-
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH-
Confidence 4678888888763 356666778888888888887654333333 255777777777777642 33334
Q ss_pred CCCCCCccEEeCCCCcccccC----ChhhhhCcccchhccCccc
Q 045166 68 SCGFSKLRIIDLSDNRFTGKL----PSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 68 ~~~l~~L~~L~Ls~N~l~g~l----p~~~~~~l~~L~~L~l~~~ 107 (305)
..+++|++|++++|.+++.- ....+..+++|+.|++++|
T Consensus 224 -~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 224 -ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp -HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred -HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 45667777777777766321 1222334667777777665
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=6.5e-15 Score=117.27 Aligned_cols=130 Identities=11% Similarity=0.055 Sum_probs=101.5
Q ss_pred CEEEcccCccccccChhhhcC-CCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNENTFLQRIPRSLINC-SKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|++++|+++ .+|. +..+ ++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+ ..+++|++|++
T Consensus 22 ~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L 95 (176)
T 1a9n_A 22 RELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLD--QALPDLTELIL 95 (176)
T ss_dssp EEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHH--HHCTTCCEEEC
T ss_pred eEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchh--hcCCCCCEEEC
Confidence 36999999999 5565 5555 499999999999998 4 578999999999999999997544445 68999999999
Q ss_pred CCCcccccCCh-hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCC
Q 045166 80 SDNRFTGKLPS-NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNN 158 (305)
Q Consensus 80 s~N~l~g~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N 158 (305)
++|+++ .+|. ..+..+++|+.|++++|....... ........+++|+.||+++|
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~------------------------~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKH------------------------YRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTT------------------------HHHHHHHHCTTCSEETTEEC
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHh------------------------HHHHHHHHCCccceeCCCcC
Confidence 999997 7875 248889999999999865432100 00011234788999999999
Q ss_pred ccc
Q 045166 159 RFD 161 (305)
Q Consensus 159 ~l~ 161 (305)
.+.
T Consensus 151 ~~~ 153 (176)
T 1a9n_A 151 KLK 153 (176)
T ss_dssp CHH
T ss_pred CHH
Confidence 876
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=6.9e-16 Score=141.15 Aligned_cols=106 Identities=18% Similarity=0.075 Sum_probs=82.3
Q ss_pred CEEEcccCccccccChhhhc-----CCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceeee-----CCCC
Q 045166 1 MFYLRNENTFLQRIPRSLIN-----CSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGII-----EEPR 66 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~~ 66 (305)
++|++++|.+++..+..+.. +++|++|++++|.+++. ++..+..+++|++|++++|.++... +..+
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 57999999998665555543 67999999999999874 5777888999999999999887532 2222
Q ss_pred CCCCCCCccEEeCCCCccccc----CChhhhhCcccchhccCccccc
Q 045166 67 TSCGFSKLRIIDLSDNRFTGK----LPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 67 ~~~~l~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
..+++|++|++++|.++.. ++.. +..+++|+.|++++|..
T Consensus 253 --~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 253 --HPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNEL 296 (461)
T ss_dssp --STTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCC
T ss_pred --cCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCC
Confidence 3578999999999999843 5544 77789999999998643
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.3e-16 Score=129.75 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=60.0
Q ss_pred EEcccCccccccCh------hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccE
Q 045166 3 YLRNENTFLQRIPR------SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRI 76 (305)
Q Consensus 3 L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~ 76 (305)
++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+ ..+++|++
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~--~~~~~L~~ 97 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD--AVADTLEE 97 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH--HHHHHCSE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh--hcCCcCCE
Confidence 44555666655555 66666677777777776666 55 5666666777777766665 345444 44566667
Q ss_pred EeCCCCcccccCChhhhhCcccchhccCccc
Q 045166 77 IDLSDNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 77 L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
|++++|+++ .+| . +..+++|+.|++++|
T Consensus 98 L~L~~N~l~-~l~-~-~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 98 LWISYNQIA-SLS-G-IEKLVNLRVLYMSNN 125 (198)
T ss_dssp EEEEEEECC-CHH-H-HHHHHHSSEEEESEE
T ss_pred EECcCCcCC-cCC-c-cccCCCCCEEECCCC
Confidence 777766666 344 2 555666666666654
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.1e-16 Score=130.18 Aligned_cols=140 Identities=19% Similarity=0.118 Sum_probs=113.8
Q ss_pred hhhcCCCCCEEeccCcccccCcch------hhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCCh
Q 045166 17 SLINCSKLEFLGLGINQISDTFPS------WLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPS 90 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~ 90 (305)
.+.....++.++++.+.+++.+|. .+..+++|++|++++|.+++ +| .+ ..+++|++|++++|.++ .+|.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~--~~l~~L~~L~l~~n~l~-~l~~ 87 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SL--SGMENLRILSLGRNLIK-KIEN 87 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CH--HHHTTCCEEEEEEEEEC-SCSS
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cc--ccCCCCCEEECCCCCcc-cccc
Confidence 467788899999999999988887 89999999999999999987 66 66 88999999999999999 8886
Q ss_pred hhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccccchhhcC
Q 045166 91 NSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGAIPASIAN 170 (305)
Q Consensus 91 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~~p~~~~~ 170 (305)
. +..+++|+.|++++|.... . + ....+++|+.|++++|++++ +|.
T Consensus 88 ~-~~~~~~L~~L~L~~N~l~~-l--------------------------~--~~~~l~~L~~L~l~~N~i~~-~~~---- 132 (198)
T 1ds9_A 88 L-DAVADTLEELWISYNQIAS-L--------------------------S--GIEKLVNLRVLYMSNNKITN-WGE---- 132 (198)
T ss_dssp H-HHHHHHCSEEEEEEEECCC-H--------------------------H--HHHHHHHSSEEEESEEECCC-HHH----
T ss_pred h-hhcCCcCCEEECcCCcCCc-C--------------------------C--ccccCCCCCEEECCCCcCCc-hhH----
Confidence 4 7788999999999864321 0 0 11237789999999999983 322
Q ss_pred CCCceeeecCCccccCCCCCCEEeccCCcceecCCC
Q 045166 171 LKGLQFSGRIPQQLAELTFLAFFNVSDNYLTGPIPQ 206 (305)
Q Consensus 171 L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 206 (305)
...+..+++|++|++++|++++.+|.
T Consensus 133 ----------~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 133 ----------IDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ----------HHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ----------HHHHhcCCCCCEEEecCCcccccccc
Confidence 02467889999999999999988765
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=8.9e-14 Score=122.60 Aligned_cols=102 Identities=13% Similarity=0.004 Sum_probs=90.2
Q ss_pred EEEcccC-ccccccChhhhcCCCCCEEeccC-cccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 2 FYLRNEN-TFLQRIPRSLINCSKLEFLGLGI-NQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 2 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
.++++++ +++ .+|. +..+++|+.|+|++ |.|++..|..|.++++|++|+|++|++++..|..| .++++|++|||
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF--HFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG--GSCSCCCEEEC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh--cCCcCCCEEeC
Confidence 4688888 888 5888 99999999999996 99999666889999999999999999999888888 89999999999
Q ss_pred CCCcccccCChhhhhCcccchhccCccccc
Q 045166 80 SDNRFTGKLPSNSFLCWNAMKIVNTSALRY 109 (305)
Q Consensus 80 s~N~l~g~lp~~~~~~l~~L~~L~l~~~~~ 109 (305)
++|+|+ .+|...+..+. |+.|++.+|.+
T Consensus 88 ~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 88 SFNALE-SLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSSCCS-CCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCCccc-eeCHHHcccCC-ceEEEeeCCCc
Confidence 999999 77777677666 99999988643
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.8e-13 Score=108.35 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=77.5
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..+ ..+++|++|+|+
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~ 110 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF--DNLKSLTHIWLL 110 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHh--cCCCCCCEEEeC
Confidence 579999999998889999999999999999999998666678899999999999999998666667 889999999999
Q ss_pred CCcccccC
Q 045166 81 DNRFTGKL 88 (305)
Q Consensus 81 ~N~l~g~l 88 (305)
+|.++..-
T Consensus 111 ~N~~~c~c 118 (170)
T 3g39_A 111 NNPWDCAC 118 (170)
T ss_dssp SSCBCTTB
T ss_pred CCCCCCCc
Confidence 99998443
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=3.2e-13 Score=107.25 Aligned_cols=87 Identities=18% Similarity=0.107 Sum_probs=76.9
Q ss_pred CEEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 1 MFYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..+ ..+++|++|+++
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~--~~l~~L~~L~L~ 113 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF--DNLKSLTHIYLY 113 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCSEEECC
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHh--ccccCCCEEEeC
Confidence 579999999998889999999999999999999999555567899999999999999997655557 889999999999
Q ss_pred CCcccccCCh
Q 045166 81 DNRFTGKLPS 90 (305)
Q Consensus 81 ~N~l~g~lp~ 90 (305)
+|.+. ..+.
T Consensus 114 ~N~~~-c~~~ 122 (174)
T 2r9u_A 114 NNPWD-CECR 122 (174)
T ss_dssp SSCBC-TTBG
T ss_pred CCCcc-cccc
Confidence 99998 4443
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=8.6e-12 Score=109.10 Aligned_cols=78 Identities=13% Similarity=0.023 Sum_probs=58.9
Q ss_pred CEEEcccCccc--------------------cccChhhhc--------CCCCCEEeccCcccccCcchhhcCCCCCCEEE
Q 045166 1 MFYLRNENTFL--------------------QRIPRSLIN--------CSKLEFLGLGINQISDTFPSWLGTLPKLNVLI 52 (305)
Q Consensus 1 ~~L~Ls~N~l~--------------------~~~p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 52 (305)
++|||++|++. ...+.+|.+ |++|+.|+|++ .++..-+.+|.++++|+.++
T Consensus 52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~ 130 (329)
T 3sb4_A 52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ 130 (329)
T ss_dssp CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence 47999999988 233456778 99999999999 88875566788999999999
Q ss_pred cccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 53 LRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 53 L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
+++|.+....+..| .++.++..+..+.
T Consensus 131 l~~n~i~~i~~~aF--~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 131 IRKKTAPNLLPEAL--ADSVTAIFIPLGS 157 (329)
T ss_dssp BCCSSCCEECTTSS--CTTTCEEEECTTC
T ss_pred cCCCCccccchhhh--cCCCceEEecCcc
Confidence 99998876555555 5666666666554
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.6e-13 Score=122.09 Aligned_cols=166 Identities=11% Similarity=-0.011 Sum_probs=100.9
Q ss_pred CEEEcccCccccccChhhhcC-----CCCCEEeccCcccccCcchhhc-CCCCCCEEEcccccceeeeCCCCCC---CCC
Q 045166 1 MFYLRNENTFLQRIPRSLINC-----SKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSNIFYGIIEEPRTS---CGF 71 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~---~~l 71 (305)
++|+|++|.++......+..+ ++|++|+|++|.++......+. .+++|++|+|++|.++......+.. ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 468888888875544444433 6888888888888653333332 4567888888888886432222100 134
Q ss_pred CCccEEeCCCCccccc----CChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCccccccccc
Q 045166 72 SKLRIIDLSDNRFTGK----LPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIP 147 (305)
Q Consensus 72 ~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (305)
++|+.|+|++|.++.. ++. .+...++|++|++++|..-.... ..........
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~L~~L~Ls~N~l~~~g~-----------------------~~L~~~L~~~ 210 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLME-GLAGNTSVTHLSLLHTGLGDEGL-----------------------ELLAAQLDRN 210 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHH-HHHTCSSCCEEECTTSSCHHHHH-----------------------HHHHHHGGGC
T ss_pred CccceeeCCCCCCChHHHHHHHH-HHhcCCCcCEEeCCCCCCCcHHH-----------------------HHHHHHHhcC
Confidence 6788888888888631 222 24567778888888754221000 0000111224
Q ss_pred ccccEEEccCCccccccchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 148 NILAGIILSNNRFDGAIPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 148 ~~L~~LdLs~N~l~g~~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
++|+.|||++|.|++.-...+ +..+...++|++|||++|.|+.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l------------~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALAL------------ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHH------------HHHHHHCSSCCEEECTTSSCCH
T ss_pred CCcCeEECCCCCCCHHHHHHH------------HHHHHhCCCCCEEeccCCCCCH
Confidence 578888888888874322222 2345567889999999998864
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.6e-11 Score=108.11 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=73.7
Q ss_pred CEEEccc-CccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeC
Q 045166 1 MFYLRNE-NTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~L 79 (305)
++|+|++ |+|++..|..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+ ..++ |+.|+|
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~~~-L~~l~l 110 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV--QGLS-LQELVL 110 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT--CSCC-CCEEEC
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc--ccCC-ceEEEe
Confidence 4799996 99998888899999999999999999999888889999999999999999997655555 4555 999999
Q ss_pred CCCcccc
Q 045166 80 SDNRFTG 86 (305)
Q Consensus 80 s~N~l~g 86 (305)
++|.+..
T Consensus 111 ~~N~~~c 117 (347)
T 2ifg_A 111 SGNPLHC 117 (347)
T ss_dssp CSSCCCC
T ss_pred eCCCccC
Confidence 9999983
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=9.7e-13 Score=123.94 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=29.3
Q ss_pred cCCCCCEEeccCcccccCcchhhc-CCCCCCEEEcccc-cceee-eCCCCCCCCCCCccEEeCCCCccc
Q 045166 20 NCSKLEFLGLGINQISDTFPSWLG-TLPKLNVLILRSN-IFYGI-IEEPRTSCGFSKLRIIDLSDNRFT 85 (305)
Q Consensus 20 ~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~~~l~~L~~L~Ls~N~l~ 85 (305)
.+++|++|++++|.+++..+..+. .+++|++|+|++| .++.. ++... ..+++|++|++++|.++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA--ATCRNLKELDLRESDVD 169 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHH--HHCTTCCEEECTTCEEE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHH--HhCCCCCEEeCcCCccC
Confidence 445555555555555544444443 3555555555555 22211 11111 23455555555555544
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.17 E-value=5.9e-12 Score=118.60 Aligned_cols=32 Identities=9% Similarity=-0.005 Sum_probs=18.8
Q ss_pred ccccccccEEEccCCccccccc-hhhcCCCCce
Q 045166 144 NKIPNILAGIILSNNRFDGAIP-ASIANLKGLQ 175 (305)
Q Consensus 144 ~~~~~~L~~LdLs~N~l~g~~p-~~~~~L~~L~ 175 (305)
...+++|+.|+|++|.+++... ..+..+++|+
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 3446778888888888765433 2234444443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=3.5e-10 Score=98.85 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=68.0
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccccee----eeCCCC-----------
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYG----IIEEPR----------- 66 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~----------- 66 (305)
.|+|++ .++..-+.+|.+|++|+.|++++|.+....+..|.++.++..+.+..+.... .-...|
T Consensus 105 ~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~ 183 (329)
T 3sb4_A 105 KVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ 183 (329)
T ss_dssp C-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEE
T ss_pred EEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEE
Confidence 467777 7776667789999999999999999876555566666666666554422100 000000
Q ss_pred ----------------CC---------------------CCCCCccEEeCCCCcccccCChhhhhCcccchhccCcc
Q 045166 67 ----------------TS---------------------CGFSKLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSA 106 (305)
Q Consensus 67 ----------------~~---------------------~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~ 106 (305)
.. ..+++|+.+++++|+++ .+|..+|.++.+|+.+++.+
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 184 VGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp ECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCT
T ss_pred ecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCc
Confidence 00 02567888888887787 77777788888888887766
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=2.9e-11 Score=113.81 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=36.9
Q ss_pred CEEEcccCccccc----cChhhhcCCCCCEEeccCccccc----CcchhhcCCCCCCEEEccccccee
Q 045166 1 MFYLRNENTFLQR----IPRSLINCSKLEFLGLGINQISD----TFPSWLGTLPKLNVLILRSNIFYG 60 (305)
Q Consensus 1 ~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~ 60 (305)
++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+
T Consensus 167 ~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp SEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred CEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 4677777777654 33445566777777777777652 234444566777777777666543
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.91 E-value=1.2e-11 Score=116.45 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=18.8
Q ss_pred ChhhhcCCCCCEEeccCcccccCcc-hhhcCCCCCCEEEcccc
Q 045166 15 PRSLINCSKLEFLGLGINQISDTFP-SWLGTLPKLNVLILRSN 56 (305)
Q Consensus 15 p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N 56 (305)
|..+..+++|++|++++|.+++... ..+..+++|++|++++|
T Consensus 282 ~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3333345555555555555433211 12334455555555544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=5.9e-11 Score=105.54 Aligned_cols=142 Identities=13% Similarity=0.007 Sum_probs=96.4
Q ss_pred CEEEcccCccccccChhh-hcCCCCCEEeccCcccccCcchhh-----cCCCCCCEEEcccccceee----eCCCCCCCC
Q 045166 1 MFYLRNENTFLQRIPRSL-INCSKLEFLGLGINQISDTFPSWL-----GTLPKLNVLILRSNIFYGI----IEEPRTSCG 70 (305)
Q Consensus 1 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~p~~~~~~~ 70 (305)
++|||++|.++..-...+ ..+++|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+ ..
T Consensus 104 ~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L--~~ 181 (372)
T 3un9_A 104 DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL--AG 181 (372)
T ss_dssp EEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH--HT
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH--hc
Confidence 379999999975444444 346789999999999976444444 2468899999999998642 22333 45
Q ss_pred CCCccEEeCCCCccccc----CChhhhhCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccc
Q 045166 71 FSKLRIIDLSDNRFTGK----LPSNSFLCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKI 146 (305)
Q Consensus 71 l~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (305)
+++|++|||++|.++.. ++ ..+...++|+.|++++|........ ........
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~-~~L~~~~~L~~L~Ls~N~i~~~g~~-----------------------~l~~~L~~ 237 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLA-AQLDRNRQLQELNVAYNGAGDTAAL-----------------------ALARAARE 237 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHH-HHGGGCSCCCEEECCSSCCCHHHHH-----------------------HHHHHHHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHH-HHHhcCCCcCeEECCCCCCCHHHHH-----------------------HHHHHHHh
Confidence 78899999999999732 22 2356677899999998643221000 00001112
Q ss_pred cccccEEEccCCccccccchhh
Q 045166 147 PNILAGIILSNNRFDGAIPASI 168 (305)
Q Consensus 147 ~~~L~~LdLs~N~l~g~~p~~~ 168 (305)
.++|+.|||++|.|++.-...+
T Consensus 238 ~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 238 HPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CSSCCEEECTTSSCCHHHHHHH
T ss_pred CCCCCEEeccCCCCCHHHHHHH
Confidence 4679999999999986544444
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=3.8e-08 Score=88.21 Aligned_cols=179 Identities=11% Similarity=0.010 Sum_probs=91.8
Q ss_pred EEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCC
Q 045166 3 YLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDN 82 (305)
Q Consensus 3 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N 82 (305)
+++..| ++..-..+|.++ +|+.+.+.. .+...-+..|.++++|+.+++++|+++..-...| . ..+|+.+.+..+
T Consensus 140 i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF--~-~~~L~~l~lp~~ 213 (401)
T 4fdw_A 140 VVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF--V-YAGIEEVLLPVT 213 (401)
T ss_dssp EECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT--T-TCCCSEEECCTT
T ss_pred EEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE--e-ecccCEEEeCCc
Confidence 344333 443334455553 466666664 4444344566667777777777776665333333 2 466777777643
Q ss_pred cccccCChhhhhCcccchhccCccc-ccccccccCCCCcCCCccccccccccc--cccCcccccccccccccEEEccCCc
Q 045166 83 RFTGKLPSNSFLCWNAMKIVNTSAL-RYLQDVLFPYGQVSSNVLGTYDYSRTM--NSKGRVMTYNKIPNILAGIILSNNR 159 (305)
Q Consensus 83 ~l~g~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~LdLs~N~ 159 (305)
++ .++..+|.++++|+.+.+..+ ..++...|.. . .+..+.+ ....+....+..+.+|+.+++.+|.
T Consensus 214 -l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~----~-----~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 214 -LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE----S-----GITTVKLPNGVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp -CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT----C-----CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred -hh-eehhhHhhCCCCCCEEecCCCccCcccccccc----C-----CccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc
Confidence 55 566666777777777766542 1111111110 0 0111111 1122233344557778888887776
Q ss_pred cc-----cccchhhcCCCCce---ee----ecCCccccCCCCCCEEeccCC
Q 045166 160 FD-----GAIPASIANLKGLQ---FS----GRIPQQLAELTFLAFFNVSDN 198 (305)
Q Consensus 160 l~-----g~~p~~~~~L~~L~---l~----g~ip~~l~~l~~L~~L~Ls~N 198 (305)
+. ..-+..|.++.+|+ +. ..-...|.+|.+|+.+++..|
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT
T ss_pred ccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc
Confidence 54 22334555555554 21 122345666777777777544
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.86 E-value=3.4e-08 Score=88.54 Aligned_cols=182 Identities=12% Similarity=0.021 Sum_probs=116.7
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
.+++.. .++..-+.+|.+|++|+.+++++|.++. +|.......+|+.+.+..+ ++..-...| .++++|+.+++..
T Consensus 161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF--~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAF--LKTSQLKTIEIPE 235 (401)
T ss_dssp EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTT--TTCTTCCCEECCT
T ss_pred EEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHh--hCCCCCCEEecCC
Confidence 455654 5665566789999999999999999987 5544334689999999855 665555566 7888999999987
Q ss_pred CcccccCChhhhhCcccchhccCccc-ccccccccCCCCcCCCcccccccccccccc--------CcccccccccccccE
Q 045166 82 NRFTGKLPSNSFLCWNAMKIVNTSAL-RYLQDVLFPYGQVSSNVLGTYDYSRTMNSK--------GRVMTYNKIPNILAG 152 (305)
Q Consensus 82 N~l~g~lp~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~L~~ 152 (305)
| ++ .++..+|.+ .+|+.+.+.++ ..++...|..- . .+..+.+..+ .+....+..+.+|+.
T Consensus 236 ~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c---~-----~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 236 N-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYC---P-----ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp T-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTC---T-----TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred C-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCC---C-----CCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 5 55 677777776 67777766441 11111111000 0 1111111111 133344556888999
Q ss_pred EEccCCccccccchhhcCCCCce---ee----ecCCccccCCCCCCEEeccCCcce
Q 045166 153 IILSNNRFDGAIPASIANLKGLQ---FS----GRIPQQLAELTFLAFFNVSDNYLT 201 (305)
Q Consensus 153 LdLs~N~l~g~~p~~~~~L~~L~---l~----g~ip~~l~~l~~L~~L~Ls~N~l~ 201 (305)
++|. +.++..-...|.++.+|+ +. ..-+..|.++ +|+.+++++|.+.
T Consensus 305 l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 305 FEIP-ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECCC-TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEeC-CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 9998 457744455777777766 32 2234578889 9999999999765
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.85 E-value=8e-10 Score=93.13 Aligned_cols=98 Identities=16% Similarity=0.061 Sum_probs=73.2
Q ss_pred EEcccCccc---cccChhhhcCCCCCEEeccCccccc--CcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCC--Ccc
Q 045166 3 YLRNENTFL---QRIPRSLINCSKLEFLGLGINQISD--TFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFS--KLR 75 (305)
Q Consensus 3 L~Ls~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~--~L~ 75 (305)
++++.|+.. ..++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+ ..+. +|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l--~~l~~l~L~ 223 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL--DKIKGLKLE 223 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG--GGGTTSCCS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh--hhcccCCcc
Confidence 345666432 2223333578999999999999998 4567778999999999999999874 123 3344 899
Q ss_pred EEeCCCCcccccCCh------hhhhCcccchhccC
Q 045166 76 IIDLSDNRFTGKLPS------NSFLCWNAMKIVNT 104 (305)
Q Consensus 76 ~L~Ls~N~l~g~lp~------~~~~~l~~L~~L~l 104 (305)
.|+|++|.+++.+|. .++..+++|+.||-
T Consensus 224 ~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 224 ELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp EEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred eEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 999999999987773 34677888888873
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=1.3e-08 Score=81.29 Aligned_cols=69 Identities=16% Similarity=0.030 Sum_probs=47.3
Q ss_pred ChhhhcCCCCCEEeccCc-ccccC----cchhhcCCCCCCEEEcccccceee----eCCCCCCCCCCCccEEeCCCCccc
Q 045166 15 PRSLINCSKLEFLGLGIN-QISDT----FPSWLGTLPKLNVLILRSNIFYGI----IEEPRTSCGFSKLRIIDLSDNRFT 85 (305)
Q Consensus 15 p~~~~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~~~l~~L~~L~Ls~N~l~ 85 (305)
...+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+ ...++|++|+|++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L--~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML--KVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH--HHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH--HhCCCcCEEECcCCcCC
Confidence 345667888899999988 87642 334455678888888888887532 11122 33467888888888887
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=8.6e-08 Score=80.71 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=61.0
Q ss_pred CEEEcccCcccc--ccChhhhcCCCCCEEeccCcccccCcchhhcCCC--CCCEEEcccccceeeeCC-------CCCCC
Q 045166 1 MFYLRNENTFLQ--RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLP--KLNVLILRSNIFYGIIEE-------PRTSC 69 (305)
Q Consensus 1 ~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~-------~~~~~ 69 (305)
++|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|. .+ .
T Consensus 173 ~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il--~ 248 (267)
T 3rw6_A 173 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR--E 248 (267)
T ss_dssp CEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH--H
T ss_pred CEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH--H
Confidence 479999999997 5678889999999999999999973 3455444 999999999999876653 13 5
Q ss_pred CCCCccEEeC
Q 045166 70 GFSKLRIIDL 79 (305)
Q Consensus 70 ~l~~L~~L~L 79 (305)
.+++|+.||=
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 6789998873
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=5.2e-08 Score=77.76 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=64.4
Q ss_pred CEEEcccC-ccccc----cChhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceee----eCCCCC
Q 045166 1 MFYLRNEN-TFLQR----IPRSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGI----IEEPRT 67 (305)
Q Consensus 1 ~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~ 67 (305)
++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +...+
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L- 117 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL- 117 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG-
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH-
Confidence 47999999 88743 456677789999999999999753 344455678999999999998753 23334
Q ss_pred CCCCCCccEEeC--CCCccc
Q 045166 68 SCGFSKLRIIDL--SDNRFT 85 (305)
Q Consensus 68 ~~~l~~L~~L~L--s~N~l~ 85 (305)
...++|++|+| ++|.+.
T Consensus 118 -~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 118 -QSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp -GGCSSCCEEECCCCSSCCC
T ss_pred -HhCCCceEEEecCCCCCCC
Confidence 56678999999 889987
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=7.4e-08 Score=85.04 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=57.7
Q ss_pred hhhhcCCCCCEEeccCcccc---------cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccc
Q 045166 16 RSLINCSKLEFLGLGINQIS---------DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTG 86 (305)
Q Consensus 16 ~~~~~l~~L~~L~L~~N~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g 86 (305)
.++..+++|+.|.+..+... +.++..+..+++|+.|+|++|.-. .++. + .+++|+.|++..+.+..
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~---~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K---PRPNLKSLEIISGGLPD 207 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C---BCTTCSEEEEECSBCCH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c---cCCCCcEEEEecCCCCh
Confidence 44567889999999765431 225556678899999999988311 2332 3 37899999999888763
Q ss_pred cCChhhhh--CcccchhccCc
Q 045166 87 KLPSNSFL--CWNAMKIVNTS 105 (305)
Q Consensus 87 ~lp~~~~~--~l~~L~~L~l~ 105 (305)
..... +. .+++|+.|+++
T Consensus 208 ~~l~~-l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 208 SVVED-ILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHH-HHHSBCTTCCEEEEE
T ss_pred HHHHH-HHHccCCCCcEEEEe
Confidence 32222 32 68899998875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=2.4e-07 Score=81.76 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=92.1
Q ss_pred ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC--Cccccc---
Q 045166 13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD--NRFTGK--- 87 (305)
Q Consensus 13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~--N~l~g~--- 87 (305)
.++..+..+++|+.|++++|.-.. ++. + .+++|+.|+|..+.+.......+....+++|+.|+|+. |...|.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 355667889999999999884122 443 3 38899999999888754322222113689999999863 222111
Q ss_pred --CChhhh--hCcccchhccCcccccccccccCCCCcCCCccccccccccccccCcccccccccccccEEEccCCccccc
Q 045166 88 --LPSNSF--LCWNAMKIVNTSALRYLQDVLFPYGQVSSNVLGTYDYSRTMNSKGRVMTYNKIPNILAGIILSNNRFDGA 163 (305)
Q Consensus 88 --lp~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~g~ 163 (305)
+.. .+ ..+++|+.|++.+|....... ..... ...+++|+.|||+.|.+++.
T Consensus 240 ~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~-----------------------~~la~-a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 240 NVFRP-LFSKDRFPNLKWLGIVDAEEQNVVV-----------------------EMFLE-SDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp GGTGG-GSCTTTCTTCCEEEEESCTTHHHHH-----------------------HHHHH-CSSGGGCSEEECCSSCCBHH
T ss_pred HHHHH-HHhcCCCCCcCEEeCCCCCCchHHH-----------------------HHHHh-CccCCCCCEEECCCCCCChH
Confidence 111 12 246788888876643221000 00000 01367899999999998854
Q ss_pred cchhhcCCCCceeeecCCccccCCCCCCEEeccCCccee
Q 045166 164 IPASIANLKGLQFSGRIPQQLAELTFLAFFNVSDNYLTG 202 (305)
Q Consensus 164 ~p~~~~~L~~L~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 202 (305)
-+..+ +..+..+++|+.|+|++|.++.
T Consensus 295 G~~~L------------~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 295 GARLL------------LDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp HHHHH------------HTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHH------------HhhcccCCcceEEECCCCcCCH
Confidence 33322 2334567889999999998763
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=8.5e-06 Score=63.85 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=64.2
Q ss_pred cChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEccccc-ceeeeCCCCCCCCC----CCccEEeCCCCc-cccc
Q 045166 14 IPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNI-FYGIIEEPRTSCGF----SKLRIIDLSDNR-FTGK 87 (305)
Q Consensus 14 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~l----~~L~~L~Ls~N~-l~g~ 87 (305)
+|.....--+|+.||++++.++..--..+..+++|++|+|++|. ++..--..+ +.+ ++|++|+|+++. ++..
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCCHH
Confidence 34433333479999999999876544567889999999999985 543211122 333 479999999974 7622
Q ss_pred CChhhhhCcccchhccCccccccc
Q 045166 88 LPSNSFLCWNAMKIVNTSALRYLQ 111 (305)
Q Consensus 88 lp~~~~~~l~~L~~L~l~~~~~~~ 111 (305)
-- ..+..+++|+.|+++++..++
T Consensus 131 Gl-~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 131 GI-IALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HH-HHGGGCTTCCEEEEESCTTCC
T ss_pred HH-HHHhcCCCCCEEECCCCCCCC
Confidence 11 236678899999998865443
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.62 E-value=0.00023 Score=63.29 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=36.7
Q ss_pred hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhCc
Q 045166 17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLCW 96 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l 96 (305)
+|.++.+|+.+.+..+..+ .-...|.++++|+.+.+. +.++..-...| .++.+|+.+++..+ ++ .+...+|.++
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF--~~c~~L~~i~lp~~-v~-~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVF--AGCISLKSIDIPEG-IT-QILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTT--TTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceee--cCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence 4455555555555443322 122344455555555554 22332222233 44555555555432 33 4444445554
Q ss_pred ccchhccC
Q 045166 97 NAMKIVNT 104 (305)
Q Consensus 97 ~~L~~L~l 104 (305)
.+|+.+.+
T Consensus 334 ~~L~~i~i 341 (394)
T 4gt6_A 334 EQLERIAI 341 (394)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 55444443
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=1.3e-05 Score=62.84 Aligned_cols=80 Identities=15% Similarity=-0.017 Sum_probs=54.1
Q ss_pred EEEcccCccccccChhhhcCCCCCEEeccCcc-cccCcchhhcCC----CCCCEEEccccc-ceeeeCCCCCCCCCCCcc
Q 045166 2 FYLRNENTFLQRIPRSLINCSKLEFLGLGINQ-ISDTFPSWLGTL----PKLNVLILRSNI-FYGIIEEPRTSCGFSKLR 75 (305)
Q Consensus 2 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~~~l~~L~ 75 (305)
.||++++.++..--..+.+|++|+.|+|+++. ++..--..+..+ ++|++|+|++|. ++..--..+ ..+++|+
T Consensus 65 ~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--~~~~~L~ 142 (176)
T 3e4g_A 65 AIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--HHFRNLK 142 (176)
T ss_dssp EEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--GGCTTCC
T ss_pred EEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--hcCCCCC
Confidence 68888888775544567788888888888884 665333345554 368888888874 553222234 5678888
Q ss_pred EEeCCCCc
Q 045166 76 IIDLSDNR 83 (305)
Q Consensus 76 ~L~Ls~N~ 83 (305)
.|+++++.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 88888764
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.40 E-value=0.00069 Score=60.18 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=26.9
Q ss_pred hhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCC
Q 045166 17 SLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLS 80 (305)
Q Consensus 17 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls 80 (305)
+|.+|++|+.+.+..+ ++..-..+|.++++|+.+++..+ ++..-...| .++.+|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF--~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTF--SGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT--TTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhh--cccccchhhccc
Confidence 4555555555555432 33322334555555555555433 332222233 444555544443
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.31 E-value=0.0013 Score=58.37 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=57.8
Q ss_pred ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166 15 PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL 94 (305)
Q Consensus 15 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~ 94 (305)
..+|.++..|+.+.+..+... .....|..+..++.+....+.+ ....+ ..+.+|+.+.+.++ ++ .++..+|.
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F--~~~~~L~~i~l~~~-i~-~I~~~aF~ 317 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTF--YGCSSLTEVKLLDS-VK-FIGEEAFE 317 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTT--TTCTTCCEEEECTT-CC-EECTTTTT
T ss_pred cccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccc--cccccccccccccc-cc-eechhhhc
Confidence 456778889999988877543 2445677788888887766532 12234 67778888888654 55 67767788
Q ss_pred CcccchhccCcc
Q 045166 95 CWNAMKIVNTSA 106 (305)
Q Consensus 95 ~l~~L~~L~l~~ 106 (305)
++.+|+.+++..
T Consensus 318 ~c~~L~~i~lp~ 329 (394)
T 4fs7_A 318 SCTSLVSIDLPY 329 (394)
T ss_dssp TCTTCCEECCCT
T ss_pred CCCCCCEEEeCC
Confidence 888888777654
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.29 E-value=0.00038 Score=51.70 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=38.7
Q ss_pred CEEeccCcccc-cCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCccc
Q 045166 25 EFLGLGINQIS-DTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFT 85 (305)
Q Consensus 25 ~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~ 85 (305)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..| ..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLL--DALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTG--GGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhh--hhccccCEEEecCCCee
Confidence 36777777776 12664332 457888888888876544445 67778888888888764
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.28 E-value=0.0012 Score=58.24 Aligned_cols=84 Identities=8% Similarity=0.020 Sum_probs=43.7
Q ss_pred hhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhhC
Q 045166 16 RSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFLC 95 (305)
Q Consensus 16 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~ 95 (305)
..+..+.+|+.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+ .++.+|+.+++..+ +. .++..+|.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF--~~~~~l~~i~l~~~-i~-~i~~~aF~~ 284 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL--QNCTALKTLNFYAK-VK-TVPYLLCSG 284 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT--TTCTTCCEEEECCC-CS-EECTTTTTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc--ceeehhcccccccc-ce-ecccccccc
Confidence 44555666666666544 22223334556666666666544 333333333 55556666666433 33 455555666
Q ss_pred cccchhccCc
Q 045166 96 WNAMKIVNTS 105 (305)
Q Consensus 96 l~~L~~L~l~ 105 (305)
+.+|+.+.+.
T Consensus 285 c~~L~~i~l~ 294 (379)
T 4h09_A 285 CSNLTKVVMD 294 (379)
T ss_dssp CTTCCEEEEC
T ss_pred cccccccccc
Confidence 6666655544
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.28 E-value=0.00033 Score=52.07 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=18.0
Q ss_pred CccEEeCCCCcccccCChhhhhCcccchhccCccc
Q 045166 73 KLRIIDLSDNRFTGKLPSNSFLCWNAMKIVNTSAL 107 (305)
Q Consensus 73 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~l~~~ 107 (305)
+|++|||++|+|+ .+|.+.|..+++|+.|++++|
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCC
Confidence 4555555555555 455554555555555555543
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.23 E-value=0.0011 Score=58.84 Aligned_cols=88 Identities=18% Similarity=0.307 Sum_probs=69.0
Q ss_pred ccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhh
Q 045166 13 RIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNS 92 (305)
Q Consensus 13 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~ 92 (305)
.-..+|.++++|+.+.+. +.++..-...|.++.+|+.+++..+ ++..-...| .++.+|+.+.+..+ ++ .+...+
T Consensus 279 I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF--~~C~~L~~i~ip~s-v~-~I~~~a 352 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAF--AGCEQLERIAIPSS-VT-KIPESA 352 (394)
T ss_dssp ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT--TTCTTCCEEEECTT-CC-BCCGGG
T ss_pred ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHh--hCCCCCCEEEECcc-cC-EEhHhH
Confidence 345678899999999997 4555544457889999999999865 665445566 88999999999755 76 788888
Q ss_pred hhCcccchhccCcc
Q 045166 93 FLCWNAMKIVNTSA 106 (305)
Q Consensus 93 ~~~l~~L~~L~l~~ 106 (305)
|.++.+|+.+++.+
T Consensus 353 F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 353 FSNCTALNNIEYSG 366 (394)
T ss_dssp GTTCTTCCEEEESS
T ss_pred hhCCCCCCEEEECC
Confidence 98888888887765
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.01 E-value=0.0024 Score=56.26 Aligned_cols=86 Identities=13% Similarity=0.119 Sum_probs=47.4
Q ss_pred ChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCCCcccccCChhhhh
Q 045166 15 PRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSDNRFTGKLPSNSFL 94 (305)
Q Consensus 15 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~ 94 (305)
..+|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++..-...| .++.+|+.+++.++.++ .++..+|.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF--~~c~~L~~i~l~~~~i~-~I~~~aF~ 307 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC--SGCSNLTKVVMDNSAIE-TLEPRVFM 307 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT--TTCTTCCEEEECCTTCC-EECTTTTT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc--ccccccccccccccccc-eehhhhhc
Confidence 345666667777666554 33323344555666666666443 332222333 55666666666666665 55555566
Q ss_pred CcccchhccCc
Q 045166 95 CWNAMKIVNTS 105 (305)
Q Consensus 95 ~l~~L~~L~l~ 105 (305)
++.+|+.+.+.
T Consensus 308 ~c~~L~~i~lp 318 (379)
T 4h09_A 308 DCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCCCEEEcC
Confidence 66666666554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.00061 Score=54.29 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=43.8
Q ss_pred hhcCCCCCEEeccCc-ccccC----cchhhcCCCCCCEEEcccccceeeeCCCCC--CCCCCCccEEeCCCCccc
Q 045166 18 LINCSKLEFLGLGIN-QISDT----FPSWLGTLPKLNVLILRSNIFYGIIEEPRT--SCGFSKLRIIDLSDNRFT 85 (305)
Q Consensus 18 ~~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~~~l~~L~~L~Ls~N~l~ 85 (305)
+.+-+.|+.|+|++| +|... +-+.+..-+.|+.|+|++|.+...--..++ ...-+.|+.|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 345577888999885 76532 334455667788888888888643222220 012356888888888887
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.07 E-value=0.0032 Score=50.11 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=58.5
Q ss_pred CEEEcccC-cccc----ccChhhhcCCCCCEEeccCcccccC----cchhhcCCCCCCEEEcccccceeee----CCCCC
Q 045166 1 MFYLRNEN-TFLQ----RIPRSLINCSKLEFLGLGINQISDT----FPSWLGTLPKLNVLILRSNIFYGII----EEPRT 67 (305)
Q Consensus 1 ~~L~Ls~N-~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~ 67 (305)
+.|+|++| ++.. .+-+++..-+.|+.|+|++|+|... +.+.+..-+.|++|+|++|.+...- -+.+
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL- 122 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST- 122 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT-
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH-
Confidence 46899985 7753 2456677789999999999999753 3344455688999999999997421 1122
Q ss_pred CCCCCCccEEeCCCCcc
Q 045166 68 SCGFSKLRIIDLSDNRF 84 (305)
Q Consensus 68 ~~~l~~L~~L~Ls~N~l 84 (305)
..-+.|+.|+|++|..
T Consensus 123 -~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 123 -LVTQSIVEFKADNQRQ 138 (197)
T ss_dssp -TTTCCCSEEECCCCSS
T ss_pred -hhCCceeEEECCCCcC
Confidence 3345699999987643
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.15 E-value=0.54 Score=27.13 Aligned_cols=7 Identities=43% Similarity=0.710 Sum_probs=2.7
Q ss_pred eeehhhh
Q 045166 263 LTGYAGG 269 (305)
Q Consensus 263 ~~~~~~~ 269 (305)
+.+++.+
T Consensus 14 A~gVVgG 20 (44)
T 2ks1_B 14 ATGMVGA 20 (44)
T ss_dssp THHHHHH
T ss_pred EeehhHH
Confidence 3344333
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=77.69 E-value=0.68 Score=26.71 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=8.4
Q ss_pred ehhhhhhhhhHHHHHH
Q 045166 265 GYAGGLVAGLVLGFNF 280 (305)
Q Consensus 265 ~~~~~~~~~~~~~~~~ 280 (305)
+++++++.++++++++
T Consensus 12 ~IA~gVVgGv~~~~ii 27 (44)
T 2ks1_B 12 SIATGMVGALLLLLVV 27 (44)
T ss_dssp SSTHHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHHH
Confidence 5555555555554433
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.51 E-value=12 Score=25.67 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=29.4
Q ss_pred ccccccChhhhcCCCCCEEeccCcccccCcchhhcCCCCCCEEEcccc
Q 045166 9 TFLQRIPRSLINCSKLEFLGLGINQISDTFPSWLGTLPKLNVLILRSN 56 (305)
Q Consensus 9 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 56 (305)
.++..-..+|.+|++|+.+.+..+ ++..-...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444567777888888777764 33333456777777777776543
No 168
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.72 E-value=27 Score=20.92 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=4.7
Q ss_pred eeehhhhhhhhh
Q 045166 263 LTGYAGGLVAGL 274 (305)
Q Consensus 263 ~~~~~~~~~~~~ 274 (305)
++++++++++..
T Consensus 16 i~svl~GLllL~ 27 (54)
T 2knc_A 16 LVGVLGGLLLLT 27 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334334433333
No 169
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=46.91 E-value=26 Score=21.00 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.4
Q ss_pred eehhhhhhh
Q 045166 264 TGYAGGLVA 272 (305)
Q Consensus 264 ~~~~~~~~~ 272 (305)
+++++++++
T Consensus 14 ~svl~GLLL 22 (54)
T 2l8s_A 14 LSAFAGLLL 22 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=40.58 E-value=5.2 Score=22.36 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=2.1
Q ss_pred ehhhhh
Q 045166 265 GYAGGL 270 (305)
Q Consensus 265 ~~~~~~ 270 (305)
+++.++
T Consensus 18 ~vv~Gv 23 (41)
T 2k9y_A 18 GVAVGV 23 (41)
T ss_dssp HHHHHH
T ss_pred ehhHHH
Confidence 333333
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.27 E-value=82 Score=21.25 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=26.2
Q ss_pred cccCcchhhcCCCCCCEEEcccccceeeeCCCCCCCCCCCccEEeCCC
Q 045166 34 ISDTFPSWLGTLPKLNVLILRSNIFYGIIEEPRTSCGFSKLRIIDLSD 81 (305)
Q Consensus 34 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~l~~L~~L~Ls~ 81 (305)
++..-...|.++.+|+.+.+-.+ ++.+-...| .++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF--~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMF--SGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSS--TTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHH--hccCCccEEEEcC
Confidence 34333446667777777777654 333333344 6677777776654
No 172
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=20.43 E-value=60 Score=26.55 Aligned_cols=14 Identities=21% Similarity=0.090 Sum_probs=4.9
Q ss_pred HHHHhcccccCccc
Q 045166 288 ILEKLGNVAKGNKE 301 (305)
Q Consensus 288 ~~~~~~~~~~~~~~ 301 (305)
++|.+|+..|+||+
T Consensus 248 ~kr~~W~~vk~~~~ 261 (263)
T 2yiu_B 248 TNKKLWQPIKHPRK 261 (263)
T ss_dssp HHHHHHTTTC----
T ss_pred HHHHHhhhcccccC
Confidence 34445555555544
Done!