BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045168
         (405 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dictyostelium discoideum
           GN=drap1 PE=3 SV=1
          Length = 550

 Score = 33.5 bits (75), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 147 LVAKLCKLLMMSKDKVLSVDKLVH-VKREFGFPNDFLVKLVPRYPN 191
           LV K CK+    K KV+SV+ L   +K+E  F  DFL ++V R P+
Sbjct: 46  LVMKTCKITQAKKGKVISVNHLKECIKQESTF--DFLTEIVDRIPD 89


>sp|A6L227|RNY_BACV8 Ribonuclease Y OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447
           / NCTC 11154) GN=rny PE=3 SV=1
          Length = 511

 Score = 32.7 bits (73), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 30/122 (24%)

Query: 313 AFTRHSGIFYLSLKGGIKTA---MLREAYRHSELIDRDPLLEIKERFV------------ 357
            F    G+ Y+  + G+K+    +++EA   +E+I ++ LLE+KE+F+            
Sbjct: 11  CFAVGGGLSYMLFRYGLKSKYDIIIKEAQTEAEVIKKNKLLEVKEKFLNKKADLEKEVAL 70

Query: 358 ---------------ELLEKGKHEWTEQLRLQREEVKKDMEKMALRSEDEEEKLDELMYD 402
                          EL+   K E  ++ R + E +K+++E   +  + ++++LD+L   
Sbjct: 71  RNQKIQQAENKLKQRELMLNQKQEEVQRKRTEAEAIKENLEAQIVIIDKKKDELDKLQMQ 130

Query: 403 EQ 404
           E+
Sbjct: 131 ER 132


>sp|Q1LZA3|ASNS_BOVIN Asparagine synthetase [glutamine-hydrolyzing] OS=Bos taurus GN=ASNS
           PE=2 SV=3
          Length = 561

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 10/80 (12%)

Query: 321 FYLSL-------KGGIKTAMLREAYRHSELIDRDPLLEIKERFVELLEKGKHEWTEQLRL 373
           +YLSL       K GI+  +LRE +  S LI ++ L   KE F + +   K+ W    R+
Sbjct: 428 YYLSLPPDMRVPKNGIEKHLLRETFEDSNLIPKEILWRPKEAFSDGITSVKNSW---FRI 484

Query: 374 QREEVKKDMEKMALRSEDEE 393
            ++ ++  ++  A+ S  ++
Sbjct: 485 LQDYIEHQVDDAAMASAAQK 504


>sp|B4EW02|RNB_PROMH Exoribonuclease 2 OS=Proteus mirabilis (strain HI4320) GN=rnb PE=3
           SV=1
          Length = 647

 Score = 32.7 bits (73), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 20/185 (10%)

Query: 158 SKDKVLSVDKLVHVKREF-GFPNDFLVKLVPRYPNYFKLVGCPGE--GQSFLELESW--- 211
           + D++L+++    ++RE    PN FL   + R+ N+ ++   PG   G       +W   
Sbjct: 443 NADELLTLEGFCRLRRELDNQPNQFLDSRIRRFQNFAEIKTEPGPHFGLGLEAYATWTSP 502

Query: 212 --------NPDFAKSVIQLRAEEEAK---LTGIPVRPNFNEEMREWVRDWLELDYISPYE 260
                   N    K++I   A E+ +      I  R   N      V DWL   ++ P+ 
Sbjct: 503 IRKYSDILNHRLLKAIISKSAAEKPQDEDCVRIAERRRANRMAERDVGDWLYARFLKPFA 562

Query: 261 DV-SNLDQSSQEMEKRTVAVFHELLSLSIFKRIPVPILGKFSDEYRFSNAFSSAFTRHSG 319
              S  +    ++ +  + V   L+       IP P L    DE + S    S   +   
Sbjct: 563 GTESTFNAEIIDITRGGIRV--RLVENGAIAFIPAPFLHAVRDEIQCSQETGSVIIKGET 620

Query: 320 IFYLS 324
            + L+
Sbjct: 621 AYKLN 625


>sp|P10362|SCG2_RAT Secretogranin-2 OS=Rattus norvegicus GN=Scg2 PE=2 SV=1
          Length = 619

 Score = 32.3 bits (72), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 257 SPYEDVSNLDQSSQEMEKRTVAVFHELLSLSIFKRIPVPILGKFSDEYRFSNAFSSAFTR 316
           +PY+++++ DQ   E   R +  + EL++ +  KR+P P  G   D+ +       A   
Sbjct: 494 APYDNLNDKDQELGEYLARMLVKYPELMNTNQLKRVPSP--GSSEDDLQEEEQLEQAIKE 551

Query: 317 HSG 319
           H G
Sbjct: 552 HLG 554


>sp|Q9UM07|PADI4_HUMAN Protein-arginine deiminase type-4 OS=Homo sapiens GN=PADI4 PE=1
           SV=2
          Length = 663

 Score = 32.0 bits (71), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 212 NPDFAKSVIQLRAEEEAKLTGIPVRPNFNEEMREWVRDWLELDYI 256
           N DF KSV  L  + + KLT  P   N ++   +W++D +E+ YI
Sbjct: 316 NEDFLKSVTTLAMKAKCKLTICPEEENMDD---QWMQDEMEIGYI 357


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,912,285
Number of Sequences: 539616
Number of extensions: 6703291
Number of successful extensions: 26928
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 26764
Number of HSP's gapped (non-prelim): 209
length of query: 405
length of database: 191,569,459
effective HSP length: 120
effective length of query: 285
effective length of database: 126,815,539
effective search space: 36142428615
effective search space used: 36142428615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)