Query 045168
Match_columns 405
No_of_seqs 140 out of 195
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:30:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 7E-111 2E-115 837.8 29.4 321 43-368 1-335 (335)
2 PF11955 PORR: Plant organelle 99.4 5.7E-13 1.2E-17 134.2 11.6 141 139-325 11-152 (335)
3 PLN03196 MOC1-like protein; Pr 73.1 1.6 3.5E-05 46.7 1.2 88 274-364 323-420 (487)
4 PLN03196 MOC1-like protein; Pr 62.8 12 0.00026 40.2 5.2 51 277-332 361-414 (487)
5 COG0677 WecC UDP-N-acetyl-D-ma 30.1 91 0.002 33.3 5.2 79 80-163 230-320 (436)
6 PF12872 OST-HTH: OST-HTH/LOTU 25.3 1.1E+02 0.0024 23.4 3.9 47 63-109 8-64 (74)
7 PRK03573 transcriptional regul 18.1 2.6E+02 0.0056 24.2 5.1 20 116-135 83-102 (144)
8 TIGR02337 HpaR homoprotocatech 14.6 2.4E+02 0.0053 23.6 3.9 75 67-150 35-113 (118)
9 PRK02260 S-ribosylhomocysteina 14.5 4.7E+02 0.01 24.4 5.9 92 165-286 53-150 (158)
10 PF10108 DNA_pol_B_exo2: Predi 13.1 4.1E+02 0.0089 25.7 5.4 76 207-309 54-131 (209)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=7.2e-111 Score=837.81 Aligned_cols=321 Identities=43% Similarity=0.780 Sum_probs=304.1
Q ss_pred eecChhhHHHHHhhccchHHHHHHHHHHcCCCCccchhhHHhhccccCCC-hhHHHHHhhCCCceEeeecCCCCCCCCcc
Q 045168 43 WRKDQKLDQAIENDKQYKLCARVVKEVLNEPGQVIPLRYLEKRRERLSLN-VKVRTFLNRYPGLFYTYYDRIKPKSDAVL 121 (405)
Q Consensus 43 w~rd~~LD~~v~r~k~lr~v~~lk~li~s~P~~~lpl~~L~k~r~~L~l~-~~v~~FlrkyP~iF~~~~~~~~p~~~~~~ 121 (405)
|+||++||++|+++|+++++++|+++|+++|+++|||++|+++++.||++ +++++||+|||+||++|.|+ ..+++
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~----~~~~~ 76 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHP----SRSVP 76 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccC----CCCCc
Confidence 99999999999999999999999999999999999999999999999997 89999999999999999863 44678
Q ss_pred eeecCHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCCeechhhHHHhHHhcCCcchhccccccCCCCCeEEeccCCC
Q 045168 122 FLRPSDRLRDFLEEERKIYDNNEELLVAKLCKLLMMSKDKVLSVDKLVHVKREFGFPNDFLVKLVPRYPNYFKLVGCPGE 201 (405)
Q Consensus 122 ~~rLT~~a~~L~~eE~~v~~~~e~~~v~rL~KLLMMS~~~rLpL~kl~~lr~dLGLP~Df~~~lv~~yP~~Frvv~~~~~ 201 (405)
||+||++|++|++||++|++++++++|++|+||||||.+++|||++|++++||||||+||++++|++|||+|++|+.. +
T Consensus 77 ~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~-~ 155 (335)
T PF11955_consen 77 WFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLE-D 155 (335)
T ss_pred eEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999954 4
Q ss_pred CcceEEeeecCCCcchhHHhHHHHHhh---h--------hcCCCCCCCcc--HHHHHHHHHHhhCCCCCCCCCcCCCCCC
Q 045168 202 GQSFLELESWNPDFAKSVIQLRAEEEA---K--------LTGIPVRPNFN--EEMREWVRDWLELDYISPYEDVSNLDQS 268 (405)
Q Consensus 202 g~~~LeLv~Wd~~LAVs~~E~~~~~~~---~--------~~g~~~~~~f~--k~~r~~l~~~Q~LPyiSPYed~~~l~~~ 268 (405)
|..+||||+|||+||||++|++++.+. . ...+.+|+||. +++++|+++||+|||+|||+|+++++++
T Consensus 156 ~~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~ 235 (335)
T PF11955_consen 156 GGRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPG 235 (335)
T ss_pred CCCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCC
Confidence 668999999999999999999998541 1 12244566775 7899999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhccccccccchhhhhhhhhhCCchHHHHHhhhcCCceEEEeeCCeeeEEeeeccCCCCCCCCCh
Q 045168 269 SQEMEKRTVAVFHELLSLSIFKRIPVPILGKFSDEYRFSNAFSSAFTRHSGIFYLSLKGGIKTAMLREAYRHSELIDRDP 348 (405)
Q Consensus 269 s~e~EKRaVavlHELLSLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgiFYvS~Kg~~~TVfLREAY~~~~Liek~P 348 (405)
|+++|||||||+|||||||||||+++++|+|||+|||||++++++|+|||||||||+||+|+||||||||++|+||||||
T Consensus 236 s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~P 315 (335)
T PF11955_consen 236 SDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKHP 315 (335)
T ss_pred ChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhhhH
Q 045168 349 LLEIKERFVELLEKGKHEWT 368 (405)
Q Consensus 349 l~~~r~k~~~Lm~~g~~~r~ 368 (405)
++.+|+||++||+.|.++|+
T Consensus 316 l~~~r~k~~~Lm~~~~~~~~ 335 (335)
T PF11955_consen 316 LVVIREKFLELMQEGRRKRN 335 (335)
T ss_pred hHHHHHHHHHHHhhcccccC
Confidence 99999999999999998764
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=99.44 E-value=5.7e-13 Score=134.24 Aligned_cols=141 Identities=19% Similarity=0.359 Sum_probs=116.8
Q ss_pred HHhhChHHHHHHHHHHhccCCCCeechhhHHHhHHhcCCcchhccccccCCCCCeEEeccCCCCcceEEeeecCCCcchh
Q 045168 139 IYDNNEELLVAKLCKLLMMSKDKVLSVDKLVHVKREFGFPNDFLVKLVPRYPNYFKLVGCPGEGQSFLELESWNPDFAKS 218 (405)
Q Consensus 139 v~~~~e~~~v~rL~KLLMMS~~~rLpL~kl~~lr~dLGLP~Df~~~lv~~yP~~Frvv~~~~~g~~~LeLv~Wd~~LAVs 218 (405)
+..+.....|.+|+.+|.-++++.|||+.+..++..|||+.-=..+++.+||..|.+...+..+..++.|+. -|..
T Consensus 11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~----~a~~ 86 (335)
T PF11955_consen 11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTP----EAED 86 (335)
T ss_pred HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCH----HHHH
Confidence 444556789999999999999999999999999999999522234899999999999885556778999986 3333
Q ss_pred HHhHHHHHhhhhcCCCCCCCccHHHHHHHHHHhhCCCCCCCCCcCCCCCCchhHHHHHHHHHHHHhhccccccccchhhh
Q 045168 219 VIQLRAEEEAKLTGIPVRPNFNEEMREWVRDWLELDYISPYEDVSNLDQSSQEMEKRTVAVFHELLSLSIFKRIPVPILG 298 (405)
Q Consensus 219 ~~E~~~~~~~~~~g~~~~~~f~k~~r~~l~~~Q~LPyiSPYed~~~l~~~s~e~EKRaVavlHELLSLTveKr~~~~~L~ 298 (405)
.+++.. .-.+ ++|-.+|..|+.||||+..+++++++|.
T Consensus 87 L~~eE~-----------------------~~~~-------------------~~e~~~v~rL~KLLMMS~~~rlpL~ki~ 124 (335)
T PF11955_consen 87 LLREER-----------------------RVRE-------------------EMEPDLVERLRKLLMMSKDRRLPLSKIA 124 (335)
T ss_pred HHHHHH-----------------------HHHH-------------------hChHHHHHHHHHHhccCCCCcccHHHHH
Confidence 332222 1122 6778999999999999999999999999
Q ss_pred hhhhhhCCchHHH-HHhhhcCCceEEEe
Q 045168 299 KFSDEYRFSNAFS-SAFTRHSGIFYLSL 325 (405)
Q Consensus 299 ~fr~efgLp~k~~-~~l~rHPgiFYvS~ 325 (405)
|++++||||.+|. .++.+||+.|-|..
T Consensus 125 ~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 125 HLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred HHHHHcCCChhhccchhhhCCCCcEEee
Confidence 9999999999999 66899999999988
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=73.12 E-value=1.6 Score=46.70 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhhCCchH-HHHHhhhcCCceEEEeeCCe-eeEEeeeccCCC-CCCCCChhh
Q 045168 274 KRTVAVFHELLSLSIFKRIPVPILGKFSDEYRFSNA-FSSAFTRHSGIFYLSLKGGI-KTAMLREAYRHS-ELIDRDPLL 350 (405)
Q Consensus 274 KRaVavlHELLSLTveKr~~~~~L~~fr~efgLp~k-~~~~l~rHPgiFYvS~Kg~~-~TVfLREAY~~~-~Liek~Pl~ 350 (405)
.++|..+-.+|++..+| -..++..|++ +|++.+ +..|+.++|.++-.|.+.-+ ..=||.+==..+ +-|-..|.+
T Consensus 323 ~~~v~k~P~il~lSe~k--l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~l~~k~dFlvneMg~~~~~Iv~fP~~ 399 (487)
T PLN03196 323 GRVIEKLPQIVSLNRNV--ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAY 399 (487)
T ss_pred HHHHHhcchhhcccHHH--HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHHHHHHHHHHHHHhCCCHHHHHhChHH
Confidence 34566667788888664 3457888875 999955 66999999999999985422 122333211111 223344432
Q ss_pred -------HHHHHHHHHHHhhh
Q 045168 351 -------EIKERFVELLEKGK 364 (405)
Q Consensus 351 -------~~r~k~~~Lm~~g~ 364 (405)
.|+-|+--|...|.
T Consensus 400 LsySLEkRI~PR~~~L~~kGl 420 (487)
T PLN03196 400 FTYGLESRIKPRYERVAKKGI 420 (487)
T ss_pred hccChhhhhHHHHHHHHHcCC
Confidence 45566666666665
No 4
>PLN03196 MOC1-like protein; Provisional
Probab=62.77 E-value=12 Score=40.21 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=38.3
Q ss_pred HHHHHHHhhccccccccchhhhhhhhhhCCchHHHHHhhhcCCceEEEeeCC---eeeE
Q 045168 277 VAVFHELLSLSIFKRIPVPILGKFSDEYRFSNAFSSAFTRHSGIFYLSLKGG---IKTA 332 (405)
Q Consensus 277 VavlHELLSLTveKr~~~~~L~~fr~efgLp~k~~~~l~rHPgiFYvS~Kg~---~~TV 332 (405)
|...=-+|++.+ ..-..++.-|.+++|.| .+.+.++|.+|-.|+..+ ||.|
T Consensus 361 v~k~P~lL~~S~--~~l~~k~dFlvneMg~~---~~~Iv~fP~~LsySLEkRI~PR~~~ 414 (487)
T PLN03196 361 VVRCPQILALNL--EIMKPSLEFFKKEMKRP---LKELVEFPAYFTYGLESRIKPRYER 414 (487)
T ss_pred HHhCCceeeccH--HHHHHHHHHHHHHhCCC---HHHHHhChHHhccChhhhhHHHHHH
Confidence 333345667776 34477899999999999 455789999999998765 6765
No 5
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=30.09 E-value=91 Score=33.33 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=57.5
Q ss_pred hhHHhhccccCCC-hhHHHHHhhCCCceEeeecCCCCCCCCc-----ceeecCHHHH------HHHHHHHHHHhhChHHH
Q 045168 80 RYLEKRRERLSLN-VKVRTFLNRYPGLFYTYYDRIKPKSDAV-----LFLRPSDRLR------DFLEEERKIYDNNEELL 147 (405)
Q Consensus 80 ~~L~k~r~~L~l~-~~v~~FlrkyP~iF~~~~~~~~p~~~~~-----~~~rLT~~a~------~L~~eE~~v~~~~e~~~ 147 (405)
-.|...-..+|++ +.++.--..+|- |..|..+ |+-++. ||+ ||.+|. .|++--+++=+.|-.-+
T Consensus 230 NElali~~~~GIdvwevIeaAnt~P~-~~~~~PG--pGvGGHCIpvDP~f-l~~ka~~yg~~~rlI~tAreIN~~mP~~V 305 (436)
T COG0677 230 NELALICNAMGIDVWEVIEAANTKPR-VNIFYPG--PGVGGHCIPVDPYF-LTWKAPEYGLPARLIRTAREINDSMPRHV 305 (436)
T ss_pred HHHHHHHHHhCCcHHHHHHHhccCCc-eeecCCC--CCCCCcccccCchh-eeecccccCCchHHHHHHHHHhccCCHHH
Confidence 3466667889998 789999999999 9998764 444443 565 555554 57777777877888899
Q ss_pred HHHHHHHhccCCCCee
Q 045168 148 VAKLCKLLMMSKDKVL 163 (405)
Q Consensus 148 v~rL~KLLMMS~~~rL 163 (405)
|+++.+.|- ..++.+
T Consensus 306 v~~~~~al~-~~~k~~ 320 (436)
T COG0677 306 VDRVKEALN-KAGKPL 320 (436)
T ss_pred HHHHHHHHH-HcCCCC
Confidence 999998886 334333
No 6
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.26 E-value=1.1e+02 Score=23.35 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHHHcCCC--CccchhhHHhhcc----ccCCC----hhHHHHHhhCCCceEee
Q 045168 63 ARVVKEVLNEPG--QVIPLRYLEKRRE----RLSLN----VKVRTFLNRYPGLFYTY 109 (405)
Q Consensus 63 ~~lk~li~s~P~--~~lpl~~L~k~r~----~L~l~----~~v~~FlrkyP~iF~~~ 109 (405)
-.|+++|.+.++ +.++++.+...-. .+... .++..||+..|++|++-
T Consensus 8 ~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i~ 64 (74)
T PF12872_consen 8 KLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEIE 64 (74)
T ss_dssp HHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEEE
T ss_pred HHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEEe
Confidence 356777756654 4799999877522 22221 35899999999999994
No 7
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=18.13 E-value=2.6e+02 Score=24.24 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=16.3
Q ss_pred CCCCcceeecCHHHHHHHHH
Q 045168 116 KSDAVLFLRPSDRLRDFLEE 135 (405)
Q Consensus 116 ~~~~~~~~rLT~~a~~L~~e 135 (405)
......++.||++|.++..+
T Consensus 83 ~DrR~~~l~LT~~G~~~~~~ 102 (144)
T PRK03573 83 SDRRAKRIKLTEKAEPLISE 102 (144)
T ss_pred CCcCeeeeEEChHHHHHHHH
Confidence 44456799999999999775
No 8
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=14.64 E-value=2.4e+02 Score=23.61 Aligned_cols=75 Identities=7% Similarity=0.097 Sum_probs=42.5
Q ss_pred HHHHcCCCCccchhhHHhhccccCCC----hhHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHHhh
Q 045168 67 KEVLNEPGQVIPLRYLEKRRERLSLN----VKVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIYDN 142 (405)
Q Consensus 67 ~li~s~P~~~lpl~~L~k~r~~L~l~----~~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~~~ 142 (405)
..|..++ .+++..|++ .+|++ .++..=|.+- ++-+-..++ .......+.||++|.+++.+=..+..+
T Consensus 35 ~~l~~~~--~~t~~ela~---~~~~~~~tvs~~l~~Le~~-GlI~r~~~~---~D~R~~~v~LT~~G~~~~~~~~~~~~~ 105 (118)
T TIGR02337 35 RILAEQG--SMEFTQLAN---QACILRPSLTGILARLERD-GLVTRLKAS---NDQRRVYISLTPKGQALYASLSPQIEE 105 (118)
T ss_pred HHHHHcC--CcCHHHHHH---HhCCCchhHHHHHHHHHHC-CCEEeccCC---CCCCeeEEEECHhHHHHHHHhhHHHHH
Confidence 3444444 356677765 45554 1233333333 444443332 233456999999999999987777665
Q ss_pred ChHHHHHH
Q 045168 143 NEELLVAK 150 (405)
Q Consensus 143 ~e~~~v~r 150 (405)
....+...
T Consensus 106 ~~~~~~~~ 113 (118)
T TIGR02337 106 IYAAIEER 113 (118)
T ss_pred HHHHHHHH
Confidence 55554443
No 9
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=14.47 E-value=4.7e+02 Score=24.39 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=61.2
Q ss_pred hhhHHHhHHhcCCcchhccccccCCCCC-eEEeccCC----CCcceEEeee-cCCCcchhHHhHHHHHhhhhcCCCCCCC
Q 045168 165 VDKLVHVKREFGFPNDFLVKLVPRYPNY-FKLVGCPG----EGQSFLELES-WNPDFAKSVIQLRAEEEAKLTGIPVRPN 238 (405)
Q Consensus 165 L~kl~~lr~dLGLP~Df~~~lv~~yP~~-Frvv~~~~----~g~~~LeLv~-Wd~~LAVs~~E~~~~~~~~~~g~~~~~~ 238 (405)
+|.|+|+- .+++.+|++. .+|++-+. +| -||-+.. ++++=++.++++..+
T Consensus 53 lHTlEHL~----------At~lRn~~~~~~~iI~~sPMGCrTG-FYli~~g~~~~~~i~~l~~~~l~------------- 108 (158)
T PRK02260 53 IHTLEHLL----------AGFLRNHLDGGVEIIDISPMGCRTG-FYLILIGTPDEEDVADALKATLE------------- 108 (158)
T ss_pred hhHHHHHH----------HHHHhhCccCCceEEEECCCccccc-cEEEEeCCCCHHHHHHHHHHHHH-------------
Confidence 56777764 4677888877 67776432 34 3566654 777777777776552
Q ss_pred ccHHHHHHHHHHhhCCCCCCCCCcCCCCCCchhHHHHHHHHHHHHhhc
Q 045168 239 FNEEMREWVRDWLELDYISPYEDVSNLDQSSQEMEKRTVAVFHELLSL 286 (405)
Q Consensus 239 f~k~~r~~l~~~Q~LPyiSPYed~~~l~~~s~e~EKRaVavlHELLSL 286 (405)
.-+..+...|-.+|++=+...+-+=+.|-..|-.++.+.++-
T Consensus 109 ------~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 109 ------DVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred ------HHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 212567889999999877766666667777777777666553
No 10
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Probab=13.08 E-value=4.1e+02 Score=25.73 Aligned_cols=76 Identities=25% Similarity=0.369 Sum_probs=44.4
Q ss_pred EeeecCC-CcchhHHhHHHHHhhhhcCCCCCCCccHHHHHHHHHHhhCCCCCCCCCcCCCCCCchhHHHHHHHHHHHHhh
Q 045168 207 ELESWNP-DFAKSVIQLRAEEEAKLTGIPVRPNFNEEMREWVRDWLELDYISPYEDVSNLDQSSQEMEKRTVAVFHELLS 285 (405)
Q Consensus 207 eLv~Wd~-~LAVs~~E~~~~~~~~~~g~~~~~~f~k~~r~~l~~~Q~LPyiSPYed~~~l~~~s~e~EKRaVavlHELLS 285 (405)
.||+|+- ++=+..+..++.. .|++.|.-|... . +.|. -|.++|... |+| +-|+|+
T Consensus 54 ~LVs~NG~~FDlP~L~~Ral~----~gi~~p~~~~~~--~--k~We--nY~~Ry~~~-H~D-------------Lmd~l~ 109 (209)
T PF10108_consen 54 QLVSFNGRGFDLPVLCRRALI----HGISAPRYLDIG--N--KPWE--NYRNRYSER-HLD-------------LMDLLS 109 (209)
T ss_pred eEEecCCccCCHHHHHHHHHH----hCCCCchhhhcC--C--CCcc--ccccccCcc-ccc-------------HHHHHh
Confidence 3567763 5667777777643 566665322100 0 2454 577888877 877 345555
Q ss_pred ccc-cccccchhhhhhhhhhCCchH
Q 045168 286 LSI-FKRIPVPILGKFSDEYRFSNA 309 (405)
Q Consensus 286 LTv-eKr~~~~~L~~fr~efgLp~k 309 (405)
.-= ..+++++-|..+ +|+|.|
T Consensus 110 ~~g~~~~~sLd~la~~---lgiPgK 131 (209)
T PF10108_consen 110 FYGAKARTSLDELAAL---LGIPGK 131 (209)
T ss_pred ccCccccCCHHHHHHH---cCCCCC
Confidence 542 345666666655 999976
Done!