Query 045168
Match_columns 405
No_of_seqs 140 out of 195
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 41.4 3.3 0.00011 38.7 -1.6 93 88-195 85-178 (270)
2 3m66_A Mterf3, mterf domain-co 28.4 11 0.00037 35.1 -0.4 30 165-195 42-71 (270)
3 4fp9_B Mterf domain-containing 28.0 11 0.00037 37.2 -0.4 21 88-108 87-108 (335)
4 3rco_A Tudor domain-containing 20.0 1.4E+02 0.0048 24.0 4.8 45 64-109 17-70 (89)
5 3nqo_A MARR-family transcripti 17.1 4.7E+02 0.016 22.1 8.9 69 65-140 46-118 (189)
6 3mva_O Transcription terminati 14.6 36 0.0012 32.9 -0.0 106 69-195 44-153 (343)
7 4b8x_A SCO5413, possible MARR- 13.7 4.8E+02 0.017 21.1 6.9 66 65-137 40-109 (147)
8 4ekf_A Adenain; alpha and beta 13.6 1.9E+02 0.0065 26.7 4.5 48 166-214 6-63 (204)
9 2kp6_A Uncharacterized protein 13.1 79 0.0027 25.3 1.6 67 78-154 7-76 (82)
10 4fp9_B Mterf domain-containing 13.0 71 0.0024 31.3 1.6 31 295-325 150-181 (335)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=41.41 E-value=3.3 Score=38.66 Aligned_cols=93 Identities=19% Similarity=0.315 Sum_probs=54.5
Q ss_pred ccCCC-hhHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCCeechh
Q 045168 88 RLSLN-VKVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIYDNNEELLVAKLCKLLMMSKDKVLSVD 166 (405)
Q Consensus 88 ~L~l~-~~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~v~rL~KLLMMS~~~rLpL~ 166 (405)
.+|++ ..+.+.+.++|.++....+ ++.+ ..+.+.++..+-.+.-..++.+--.+|.+|.++. -.
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~------------~l~~-~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~--~~ 149 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVE------------RLDN-RLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPV--KE 149 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHH------------HHHH-HHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHH--HH
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHH------------HHHH-HHHHHHHHhCCCHHHHHHHHHhCCcceeechHHH--HH
Confidence 56876 4688888888888854211 1222 2223323322221111223333336777777642 34
Q ss_pred hHHHhHHhcCCcchhccccccCCCCCeEE
Q 045168 167 KLVHVKREFGFPNDFLVKLVPRYPNYFKL 195 (405)
Q Consensus 167 kl~~lr~dLGLP~Df~~~lv~~yP~~Frv 195 (405)
++.-+...+|++++=...++.++|..+..
T Consensus 150 ~v~~l~~~~G~s~~ei~~~v~~~P~il~~ 178 (270)
T 3m66_A 150 NMKVYRLELGFKHNEIQHMITRIPKMLTA 178 (270)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHCGGGGTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCChhhee
Confidence 55657778999998777888999988766
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=28.35 E-value=11 Score=35.10 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=23.7
Q ss_pred hhhHHHhHHhcCCcchhccccccCCCCCeEE
Q 045168 165 VDKLVHVKREFGFPNDFLVKLVPRYPNYFKL 195 (405)
Q Consensus 165 L~kl~~lr~dLGLP~Df~~~lv~~yP~~Frv 195 (405)
..+++-++ ++|++.+-...++.++|..|.-
T Consensus 42 ~~~l~fL~-~lG~~~~~i~~il~~~P~lL~~ 71 (270)
T 3m66_A 42 KQMLLFLK-DVGIEDNQLGAFLTKNHAIFSE 71 (270)
T ss_dssp HHHHHHHH-HHTCCGGGHHHHHHHCTTGGGS
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHhCChhhhC
Confidence 44566674 7999998888999999988754
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=28.03 E-value=11 Score=37.16 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=10.7
Q ss_pred ccCCC-hhHHHHHhhCCCceEe
Q 045168 88 RLSLN-VKVRTFLNRYPGLFYT 108 (405)
Q Consensus 88 ~L~l~-~~v~~FlrkyP~iF~~ 108 (405)
.||++ ..+.+.|.++|.++..
T Consensus 87 ~LGls~e~V~kiL~k~P~lL~~ 108 (335)
T 4fp9_B 87 LLGLNPEPVCVVLKKSPQLLKL 108 (335)
T ss_dssp HTTCCHHHHHHHHHHCGGGGGS
T ss_pred HcCCCHHHHHHHHHhChhhccC
Confidence 34554 2455555555555533
No 4
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=19.97 E-value=1.4e+02 Score=24.01 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCCccchhhHHhhcccc-CC--C------hhHHHHHhhCCCceEee
Q 045168 64 RVVKEVLNEPGQVIPLRYLEKRRERL-SL--N------VKVRTFLNRYPGLFYTY 109 (405)
Q Consensus 64 ~lk~li~s~P~~~lpl~~L~k~r~~L-~l--~------~~v~~FlrkyP~iF~~~ 109 (405)
-|+.+|.|.+++ ++++.|.+-.+.+ |= | ..+.+||+.-|.++.+-
T Consensus 17 ~iRslL~S~k~g-vtl~~L~~DYr~l~G~~iP~r~lGy~sl~~fL~siPdvv~~~ 70 (89)
T 3rco_A 17 MLRAVLQSHKNG-VALPRLQGEYRSLTGDWIPFKQLGFPTLEAYLRSVPAVVRIE 70 (89)
T ss_dssp HHHHHHHTCTTC-EEHHHHHHHHHHHHSSCCCTTTTTCSSHHHHHHTCTTTEEEE
T ss_pred HHHHHhhcCCCC-CCHHHHHHHHHHHhCCcCChhhhCcccHHHHHhcccCeEEEE
Confidence 467788888775 8999988753322 21 2 24889999999999973
No 5
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=17.10 E-value=4.7e+02 Score=22.14 Aligned_cols=69 Identities=9% Similarity=0.139 Sum_probs=42.1
Q ss_pred HHHHHHcCCCCccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHH
Q 045168 65 VVKEVLNEPGQVIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIY 140 (405)
Q Consensus 65 lk~li~s~P~~~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~ 140 (405)
+-..|...|++.++++.|+. .+|++. +++.=|.+---|=.. .+ |..+..-++.||++|.+++.+-....
T Consensus 46 vL~~L~~~~~~~~t~~eLa~---~l~is~~tvs~~l~~Le~~GlV~r~-~~---~~DrR~~~l~LT~~G~~~~~~~~~~~ 118 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIAR---KMGTSKQNINRLVANLEKNGYVDVI-PS---PHDKRAINVKVTDLGKKVMVTCSRTG 118 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEEE-EC---SSCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEec-cC---CCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 33455556777888888875 567762 333344444444333 22 23445579999999999987654443
No 6
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=14.59 E-value=36 Score=32.89 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=60.7
Q ss_pred HHcCCCCccchhhHHhhccccCCC-hhHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHHhhChHHH
Q 045168 69 VLNEPGQVIPLRYLEKRRERLSLN-VKVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIYDNNEELL 147 (405)
Q Consensus 69 i~s~P~~~lpl~~L~k~r~~L~l~-~~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~ 147 (405)
+..+|+..-++ + ..-..+|++ ..+.+.+.+||.++....+ .+.|...-| . . +.-...++
T Consensus 44 ~~~s~~~~~~v--l-~fL~~~G~s~~~i~~iv~~~P~lL~~~~~------------~l~p~l~fL-~-~---lG~s~~~i 103 (343)
T 3mva_O 44 FHRMITNEQDL--K-MFLLSKGASKEVIASIISRYPRAITRTPE------------NLSKRWDLW-R-K---IVTSDLEI 103 (343)
T ss_dssp GGCSCCCHHHH--H-HHHHHTTCCHHHHHHHHHHCGGGGGCCHH------------HHHHHHHHH-T-T---TSSCHHHH
T ss_pred hccCcccHHHH--H-HHHHHcCCCHHHHHHHHHhCcHHHhCCHH------------HHHHHHHHH-H-H---cCCCHHHH
Confidence 44556543332 2 233488998 4689999999999854211 122221111 0 1 11122333
Q ss_pred HH---HHHHHhccCCCCeechhhHHHhHHhcCCcchhccccccCCCCCeEE
Q 045168 148 VA---KLCKLLMMSKDKVLSVDKLVHVKREFGFPNDFLVKLVPRYPNYFKL 195 (405)
Q Consensus 148 v~---rL~KLLMMS~~~rLpL~kl~~lr~dLGLP~Df~~~lv~~yP~~Frv 195 (405)
+. +--.+|+-+.+..--...++.++ ++|+|.+-...++.++|..|..
T Consensus 104 ~~il~~~P~iLl~s~~~~~l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~ 153 (343)
T 3mva_O 104 VNILERSPESFFRSNNNLNLENNIKFLY-SVGLTRKCLCRLLTNAPRTFSN 153 (343)
T ss_dssp HHHHHHCSHHHHSCCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTS
T ss_pred HHHHHHCCHHHhCCChHhhHHHHHHHHH-HhCCCHHHHHHHHHhCChhhee
Confidence 33 33334555555322334677777 8999999888999999998855
No 7
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=13.71 E-value=4.8e+02 Score=21.14 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=40.2
Q ss_pred HHHHHHcCCCCccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHH
Q 045168 65 VVKEVLNEPGQVIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEER 137 (405)
Q Consensus 65 lk~li~s~P~~~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~ 137 (405)
+-.+|...|++.++.+.|.+ .+|++. ++.+=|.+---|=..- + |..+..-++.||++|.+++.+=.
T Consensus 40 vL~~L~~~~~~~~t~~eLa~---~l~~~~~tvs~~v~~Le~~Glv~r~~-~---~~DrR~~~l~LT~~G~~~~~~~~ 109 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGE---RLMVHPTSVTNTVDRLVRSGLVAKRP-N---PNDGRGTLATITDKGREVVEAAT 109 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEE-C---C----CEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHH---HHCCCHHHHHHHHHHHHhCCCEEEee-c---CCcCceeEEEECHHHHHHHHHHH
Confidence 34456667777888888874 567752 3444455554444432 2 33345579999999999986533
No 8
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=13.59 E-value=1.9e+02 Score=26.66 Aligned_cols=48 Identities=25% Similarity=0.637 Sum_probs=36.5
Q ss_pred hhHHHhHHhcCCcchhccccccCCCCCe-------EEeccCC---CCcceEEeeecCCC
Q 045168 166 DKLVHVKREFGFPNDFLVKLVPRYPNYF-------KLVGCPG---EGQSFLELESWNPD 214 (405)
Q Consensus 166 ~kl~~lr~dLGLP~Df~~~lv~~yP~~F-------rvv~~~~---~g~~~LeLv~Wd~~ 214 (405)
+.|.+|-++||+-.-|+-++-.++|.+- .||++.+ .|..+|.+ .|||.
T Consensus 6 ~EL~~lv~~Lg~~~~FLGtFDkrFPGFl~~~k~a~AIVNTg~retGGvHWiA~-Aw~P~ 63 (204)
T 4ekf_A 6 QELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAF-AWNPR 63 (204)
T ss_dssp HHHHHHHHHTTCGGGEEEEEESSCCSCCCTTSCEEEEEESCC----CCCEEEE-EEETT
T ss_pred HHHHHHHHHcCCCCcccccccCCCCCccCCCCcceeEEecCCcccCceeEEEe-EecCC
Confidence 3577888999999999999999999985 4576643 35678888 48773
No 9
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=13.09 E-value=79 Score=25.26 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=40.6
Q ss_pred chhhHHhhccccCCC---hhHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHHhhChHHHHHHHHHH
Q 045168 78 PLRYLEKRRERLSLN---VKVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIYDNNEELLVAKLCKL 154 (405)
Q Consensus 78 pl~~L~k~r~~L~l~---~~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~v~rL~KL 154 (405)
+...|+.+..+|||+ ..+.+||.+||--=.+. -...+- -|+.=..+++|+..- ++.=..+|+.|--+
T Consensus 7 ~~h~l~~LF~QLGL~s~~~~I~~FI~~H~L~~~~~------L~dApF---Wt~sQ~~FL~E~~~~-DadWaevIDqLn~~ 76 (82)
T 2kp6_A 7 SNHLLPGLFRQLGLEDEPAAIRAFIDSHPLPPRVP------LPEAPF---WTPAQAAFLRQALEC-DAEWSEAADGLAVL 76 (82)
T ss_dssp TCTHHHHHHHHHTSCCCHHHHHHHHHHSCCCTTSC------STTCTT---SCHHHHHHHHHHHHS-CCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCc------ccCCCC---CCHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 456788899999997 46889999997322222 122222 266677777766432 33335555555433
No 10
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=12.96 E-value=71 Score=31.29 Aligned_cols=31 Identities=6% Similarity=0.149 Sum_probs=25.7
Q ss_pred hhhhhhhhhhCCchH-HHHHhhhcCCceEEEe
Q 045168 295 PILGKFSDEYRFSNA-FSSAFTRHSGIFYLSL 325 (405)
Q Consensus 295 ~~L~~fr~efgLp~k-~~~~l~rHPgiFYvS~ 325 (405)
..+..|+..+|++.+ +..|+.++|.|+..|.
T Consensus 150 ~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~ 181 (335)
T 4fp9_B 150 DTVRLLKEKCLFTVQQVTKILHSCPSVLREDL 181 (335)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH
Confidence 445668889999776 7799999999999985
Done!