Query 045168
Match_columns 405
No_of_seqs 140 out of 195
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 18:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045168.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045168hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 46.9 54 0.0039 24.7 9.4 71 63-140 32-106 (135)
2 d2frha1 a.4.5.28 (A:102-216) P 16.5 1.3E+02 0.0094 22.2 6.0 62 67-135 40-105 (115)
3 d1s3ja_ a.4.5.28 (A:) Putative 12.6 1.5E+02 0.011 22.2 5.5 21 116-136 86-106 (143)
4 d3deua1 a.4.5.28 (A:2-141) Tra 12.3 93 0.0068 23.3 4.0 58 76-140 46-107 (140)
5 d2fbha1 a.4.5.28 (A:8-144) Tra 11.7 1E+02 0.0076 22.9 4.1 63 66-136 34-100 (137)
6 d1lj9a_ a.4.5.28 (A:) Transcri 10.4 1.7E+02 0.013 22.0 5.1 62 68-138 37-102 (144)
7 d2etha1 a.4.5.28 (A:1-140) Put 10.1 77 0.0056 23.9 2.7 64 68-140 40-107 (140)
8 d2a61a1 a.4.5.28 (A:5-143) Tra 8.5 1E+02 0.0074 23.2 2.9 59 76-141 44-106 (139)
9 d1lnwa_ a.4.5.28 (A:) MexR rep 8.5 2.4E+02 0.018 20.9 5.3 62 67-137 43-108 (141)
10 d1nlna_ d.3.1.7 (A:) Human ade 8.5 1.1E+02 0.0083 25.9 3.3 48 166-214 5-62 (203)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=46.92 E-value=54 Score=24.68 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCCCccchhhHHhhccccCCC----hhHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHH
Q 045168 63 ARVVKEVLNEPGQVIPLRYLEKRRERLSLN----VKVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERK 138 (405)
Q Consensus 63 ~~lk~li~s~P~~~lpl~~L~k~r~~L~l~----~~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~ 138 (405)
..+-..|..+|++.++..+|++ .++++ .++..-|.+---|-... + |.......+.||++|.+++.+=..
T Consensus 32 ~~vL~~l~~~~~~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~-~---~~D~R~~~i~lT~~G~~~~~~~~~ 104 (135)
T d3broa1 32 MTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKV-S---GKDSRQKCLKLTKKANKLETIILS 104 (135)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEE-C---SSCTTSEEEEECHHHHTTHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHh-h---hhhhhhhhhcccHHHHHHHHHHHH
Confidence 3455677778999999999886 45554 24555566666665554 2 233445799999999999877444
Q ss_pred HH
Q 045168 139 IY 140 (405)
Q Consensus 139 v~ 140 (405)
..
T Consensus 105 ~~ 106 (135)
T d3broa1 105 YM 106 (135)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 2
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=16.47 E-value=1.3e+02 Score=22.20 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=41.2
Q ss_pred HHHHcCCCCccchhhHHhhccccCCC----hhHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHH
Q 045168 67 KEVLNEPGQVIPLRYLEKRRERLSLN----VKVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEE 135 (405)
Q Consensus 67 ~li~s~P~~~lpl~~L~k~r~~L~l~----~~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~e 135 (405)
..|...|++.+++.+|.+ .++++ .++..-|.+---|-..- .|.....-++.|||+|.+.+.+
T Consensus 40 ~~l~~~~~~~~t~~~la~---~l~~~~~tvs~~i~~Le~~gli~r~~----~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 40 TYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKKR----NEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCBC----CSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHH---HHCCCHhHHHHHHHHHHhhhhheeee----cccCCceEEEEECHHHHHHHHH
Confidence 456778888888888875 56664 24555555555554332 2344455799999999998765
No 3
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=12.62 E-value=1.5e+02 Score=22.15 Aligned_cols=21 Identities=29% Similarity=0.131 Sum_probs=16.5
Q ss_pred CCCCcceeecCHHHHHHHHHH
Q 045168 116 KSDAVLFLRPSDRLRDFLEEE 136 (405)
Q Consensus 116 ~~~~~~~~rLT~~a~~L~~eE 136 (405)
..+....+.||++|.+++.+=
T Consensus 86 ~D~R~~~v~lT~~G~~~~~~~ 106 (143)
T d1s3ja_ 86 KDRRVIDLSLTDEGDIKFEEV 106 (143)
T ss_dssp SCTTSEEEEECHHHHHHHHHH
T ss_pred CCCCceEEEECHHHHHHHHHH
Confidence 344557999999999998763
No 4
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=12.31 E-value=93 Score=23.33 Aligned_cols=58 Identities=7% Similarity=0.025 Sum_probs=29.6
Q ss_pred ccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHH
Q 045168 76 VIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIY 140 (405)
Q Consensus 76 ~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~ 140 (405)
.++..+|.. .++++. ++..-|.+---| +...+ |..+....+.||++|.+++.+=..+.
T Consensus 46 ~~t~~~la~---~l~i~~~~vs~~l~~L~~~glI-~~~~~---~~D~R~~~l~lT~~G~~~~~~~~~~~ 107 (140)
T d3deua1 46 DQSQIQLAK---AIGIEQPSLVRTLDQLEDKGLI-SRQTC---ASDRRAKRIKLTEKAEPLIAEMEEVI 107 (140)
T ss_dssp SEEHHHHHH---HHTSCHHHHHHHHHHHHHTTSE-EEC-----------CEEEECGGGHHHHHHHHHHH
T ss_pred CccHHHHHH---HHCCCHhHHHHHHHHHHhCCCE-Eeccc---CCCCCceeeEECHHHHHHHHHHHHHH
Confidence 566666664 566652 333333332222 22222 33445579999999999987744433
No 5
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.69 E-value=1e+02 Score=22.92 Aligned_cols=63 Identities=5% Similarity=-0.049 Sum_probs=36.4
Q ss_pred HHHHHcCCCCccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHH
Q 045168 66 VKEVLNEPGQVIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEE 136 (405)
Q Consensus 66 k~li~s~P~~~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE 136 (405)
-..|...|+ .+++++|+. .++++. ++..=|.+---|=.. .+ |..+....+.||++|.+++.+=
T Consensus 34 L~~l~~~~~-~~t~~~la~---~~~~~~~~vs~~v~~L~~~gli~r~-~~---~~D~R~~~i~lT~~G~~~~~~~ 100 (137)
T d2fbha1 34 LLHLARHRD-SPTQRELAQ---SVGVEGPTLARLLDGLESQGLVRRL-AV---AEDRRAKHIVLTPKADVLIADI 100 (137)
T ss_dssp HHHHHHCSS-CCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEE-CC---BTTBCSCEEEECTTHHHHHHHH
T ss_pred HHHHHHcCC-CCcHHHHHH---HHCCCHHHHHHHHHHHHHcCCcccc-CC---CCCCCchhhhcCHHHHHHHHHH
Confidence 334555665 357777664 566652 333334444333333 22 3344557999999999998763
No 6
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=10.41 E-value=1.7e+02 Score=22.03 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=34.3
Q ss_pred HHHcCCCCccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHH
Q 045168 68 EVLNEPGQVIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERK 138 (405)
Q Consensus 68 li~s~P~~~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~ 138 (405)
.|..+|+ ++..+|++ .++++. +++.=|.+---|-.. .+ |..+....+.||++|.+++.+-..
T Consensus 37 ~i~~~~~--~t~~~la~---~l~i~~~tvs~~l~~L~~~glI~r~-~~---~~D~R~~~l~LT~~G~~~~~~~~~ 102 (144)
T d1lj9a_ 37 RVCENPG--IIQEKIAE---LIKVDRTTAARAIKRLEEQGFIYRQ-ED---ASNKKIKRIYATEKGKNVYPIIVR 102 (144)
T ss_dssp HHHHSTT--EEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEE-EC---SSCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHhCCC--CCHHHHHH---HHCccHhhHHHHHHHHHhhhccccc-CC---CCCCCccccccCHHHHHHHHHHHH
Confidence 4455554 56666654 556652 222222233333322 23 344456799999999999876443
No 7
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=10.06 E-value=77 Score=23.91 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=37.0
Q ss_pred HHHcCCCCccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHH
Q 045168 68 EVLNEPGQVIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIY 140 (405)
Q Consensus 68 li~s~P~~~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~ 140 (405)
.|..+|+ +++.+|+ ..+|++. ++.+=|.+---|=..- + |.....-++.||++|.+++.+-....
T Consensus 40 ~l~~~~~--~t~~~La---~~l~i~~~~vs~~v~~L~~~gli~r~~-~---~~D~R~~~l~lT~~G~~~~~~~~~~~ 107 (140)
T d2etha1 40 YVALFGP--KKMKEIA---EFLSTTKSNVTNVVDSLEKRGLVVREM-D---PVDRRTYRVVLTEKGKEIFGEILSNF 107 (140)
T ss_dssp HHHHHCC--BCHHHHH---HHTTSCHHHHHHHHHHHHHTTSEEEEE-C---TTTSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHcCC--cCHHHHH---HHHCcCHHHHHHHHHHHHHCCCeeeee-c---ccccchhhhhcCHHHHHHHHHHHHHH
Confidence 4445554 4555555 5677752 3333334444444332 2 34445679999999999988755444
No 8
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=8.53 E-value=1e+02 Score=23.17 Aligned_cols=59 Identities=15% Similarity=0.006 Sum_probs=37.5
Q ss_pred ccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHHHHHh
Q 045168 76 VIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEERKIYD 141 (405)
Q Consensus 76 ~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~~v~~ 141 (405)
.+++++|. ..+|++. +++.-|.+---|-..-. |..+...++.||++|.+++.+=.....
T Consensus 44 ~~t~~~la---~~l~i~~~tvs~~l~~L~~~gli~r~~~----~~D~R~~~i~LT~~G~~~~~~~~~~~~ 106 (139)
T d2a61a1 44 PKRPGELS---VLLGVAKSTVTGLVKRLEADGYLTRTPD----PADRRAYFLVITRKGEEVIEKVIERRE 106 (139)
T ss_dssp CBCHHHHH---HHHTCCHHHHHHHHHHHHHTTSEEEEEE----TTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH---HHhCCCcccchHHHHHHHhcCeeeeeec----cCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 35666665 4777762 45555666666655532 233345799999999999877544443
No 9
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.47 E-value=2.4e+02 Score=20.94 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=35.9
Q ss_pred HHHHcCCCCccchhhHHhhccccCCCh----hHHHHHhhCCCceEeeecCCCCCCCCcceeecCHHHHHHHHHHH
Q 045168 67 KEVLNEPGQVIPLRYLEKRRERLSLNV----KVRTFLNRYPGLFYTYYDRIKPKSDAVLFLRPSDRLRDFLEEER 137 (405)
Q Consensus 67 ~li~s~P~~~lpl~~L~k~r~~L~l~~----~v~~FlrkyP~iF~~~~~~~~p~~~~~~~~rLT~~a~~L~~eE~ 137 (405)
..|...|+ +++.+|.+ .++++. ++..=|.+---|-..- + |..+....+.||++|.+++.+-.
T Consensus 43 ~~l~~~~~--~t~~~la~---~l~~~~~~vsr~l~~L~~~G~v~r~~-~---~~D~R~~~l~lT~~G~~~~~~~~ 108 (141)
T d1lnwa_ 43 KLIDEQRG--LNLQDLGR---QMCRDKALITRKIRELEGRNLVRRER-N---PSDQRSFQLFLTDEGLAIHQHAE 108 (141)
T ss_dssp HHHHSSTT--CBHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEEEE-C---SSSSSSEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCC--CCHHHHHH---HHCccHhHHHHHHHHHHHhhceeeec-c---CCCCcchhhccCHHHHHHHHHHH
Confidence 34555554 57777764 566652 2333344444443332 2 33445579999999999877643
No 10
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}
Probab=8.46 E-value=1.1e+02 Score=25.94 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=36.4
Q ss_pred hhHHHhHHhcCCcchhccccccCCCCCeE-------EeccCC---CCcceEEeeecCCC
Q 045168 166 DKLVHVKREFGFPNDFLVKLVPRYPNYFK-------LVGCPG---EGQSFLELESWNPD 214 (405)
Q Consensus 166 ~kl~~lr~dLGLP~Df~~~lv~~yP~~Fr-------vv~~~~---~g~~~LeLv~Wd~~ 214 (405)
+.|.+|-++||+-.-|+-++-.++|.+-. ||++.+ .|..+|.+ .|||.
T Consensus 5 ~EL~~iv~~Lg~~~~FLGtFDkrFPGFl~~~k~~~AIVNT~~retGG~HWlA~-Aw~P~ 62 (203)
T d1nlna_ 5 QELKAIVKDLGCGPYFLGTYDKRFPGFVSPHKLACAIVNTAGRETGGVHWMAF-AWNPR 62 (203)
T ss_dssp HHHHHHHHHTTCGGGEEEEECTTCCCCCCTTSCEEEEEESSCTTTCCCCEEEE-EEETT
T ss_pred HHHHHHHHHcCCCCcccccccCCCCCccCCCccceeEEecCCcccCceeeEEe-EecCC
Confidence 35778889999999999899999998754 566532 35678888 48773
Done!