BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045169
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 109/222 (49%), Gaps = 51/222 (22%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISRI--RLLY--KLPFIRERIAKCYFWILGV---- 60
N + AKL N +Q +Q+EL D+SR RL + KLPF+R+R+ + +FW +G+
Sbjct: 223 NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 282
Query: 61 ------RILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
++ ++ + + IDDIYDVYG + ELE FT + +I +LP YM+LC+ G
Sbjct: 283 QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 342
Query: 111 LL------------------------EMKNVVKIYFFEAKWYHQNYVSSMKEYMTVAL-- 144
+ + ++V+ YF EAKWYH Y S+ EY+ +A
Sbjct: 343 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 402
Query: 145 ----DCLHPILMGILNLTH---AIDVIYKYEDGYTHVGIVLK 179
+ P N +H ID +Y+Y D GI+L+
Sbjct: 403 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILR 444
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYFW LGV
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 341
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 342 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 396
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYFW LGV
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 341
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 342 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 396
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYFW LGV
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 341
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 342 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 396
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYFW LGV
Sbjct: 224 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 283
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 284 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 343
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 344 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 398
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 508 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYFW LGV
Sbjct: 209 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 268
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 269 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 328
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 329 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 383
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 493 LTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 535
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 92/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYFW LGV
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEP 281
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 341
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 342 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 396
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYFW LGV
Sbjct: 224 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEP 283
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 284 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 343
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK +V+ Y E+ W+ + Y + EY++
Sbjct: 344 ILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLS 398
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL I+V Y + DGYTH VLK +++LLV+ + +
Sbjct: 508 LTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 42/199 (21%)
Query: 8 YNETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGV--- 60
+N+ LL FAK+ N LQ L++KEL +I R + KLP+ R+R+ + YFWI GV
Sbjct: 227 HNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFE 286
Query: 61 -------RILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHR 109
++LTKV++M S +DD YD Y +EL P+T+AIE ID++P+YMK ++
Sbjct: 287 PQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYK 346
Query: 110 GLLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMTVALD 145
LL+ M + + Y EAKW QNY S +E+ AL
Sbjct: 347 ALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALP 406
Query: 146 CLHPILMGILNLTHAIDVI 164
++ I + D++
Sbjct: 407 TCGYAMLAITSFVGMGDIV 425
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 150 ILMGILNLTHAIDVIYKYEDGYTHVGIVLKDFVVSLLVNPMPL 192
+L LNL +DV+Y+ DGYT+VG K + SLL+ P+ L
Sbjct: 512 VLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 50/211 (23%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGV---- 60
N T+L AKL N +Q +Q+EL + SR L+++LPF+R+RI +CY+W GV
Sbjct: 244 NPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERR 303
Query: 61 -----RI-LTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
RI LTK+ ++ + IDD++D+YG ++EL+ FT+AI+ ++ +LP YM++C+
Sbjct: 304 QHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLA 363
Query: 111 LLEMKN------------------------VVKIYFFEAKWYHQNYVSSMKEYMTVALDC 146
L N +++ Y EAKWY++ + S++EYM +
Sbjct: 364 LFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWIS 423
Query: 147 LH--PILMGI-LNLTHAI-----DVIYKYED 169
+ PIL + LT +I + ++KY D
Sbjct: 424 IGGIPILSHLFFRLTDSIEEEAAESMHKYHD 454
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYF LGV
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEP 281
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 341
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 342 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 396
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 91/175 (52%), Gaps = 42/175 (24%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGVR--- 61
N LL FAKL N LQ L+++EL +SR + + LP+ R+R+ +CYF LGV
Sbjct: 222 NNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYFEP 281
Query: 62 -------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
+L K +SM S +DD +D YG +KELE +T AI+ + ID+LP YMK+ ++
Sbjct: 282 QYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKA 341
Query: 111 LLE------------------------MKNVVKIYFFEAKWYHQNYVSSMKEYMT 141
+L+ MK VV+ Y E+ W+ + Y + EY++
Sbjct: 342 ILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLS 396
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 151 LMGILNLTHAIDVIYKYE-DGYTHVGIVLKDFVVSLLVNPMPL 192
L ILNL ++V Y + DGYTH VLK +++LLV+ + +
Sbjct: 506 LTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 58/225 (25%)
Query: 9 NETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGV---- 60
N +L A L N +Q +Q+EL + R + KLPF R+R+ +CYFW G+
Sbjct: 217 NPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPR 276
Query: 61 -----RIL-TKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRG 110
RI+ KV ++ + IDDIYDVYG ++ELE FT I ++ID+LP YM+LC
Sbjct: 277 QHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLA 336
Query: 111 L-----------LEMKNVVKI-------------YFFEAKWYHQNYVSSMKEYMTVALDC 146
L ++ K V I Y EA+W++ + S++EY+ +
Sbjct: 337 LNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQS 396
Query: 147 LHPILMGILNLTH------------AIDVIYKYEDGYTHVGIVLK 179
+ M LTH +D +YKY D VL+
Sbjct: 397 ISGPCM----LTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLR 437
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 18/121 (14%)
Query: 5 KKIYNETLLTFAKLASNKLQNLYQKELDDISR----IRLLYKLPFIRERIAKCYFWILGV 60
K+ N+ LL A L N +Q++YQ++L + SR + L KL F R+R+ + ++W +GV
Sbjct: 222 KEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGV 281
Query: 61 RI----------LTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKL 106
+ K+ S + IDDIYDVYG + ELE FT A+E +AI+ LP YMKL
Sbjct: 282 AFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKL 341
Query: 107 C 107
C
Sbjct: 342 C 342
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 41/178 (23%)
Query: 7 IYNETLLTFAKLASNKLQNLYQKELDDISR---IRLLYKLPFIRERIAKCYFWILGV--- 60
I NE L AKL NK+Q+++Q EL D+ R L F RER+ + YF
Sbjct: 458 ISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTEIYFSPASFIFE 517
Query: 61 -------RILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHR 109
+ TK + T +DD+YD +G + +L+ FT +++ S +D++P+ MK+C
Sbjct: 518 PEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFV 577
Query: 110 GLLE--------------------MKNVVKI----YFFEAKWYHQNYVSSMKEYMTVA 143
G ++NV K+ Y EA+W YV S EY+ A
Sbjct: 578 GFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENA 635
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 44/193 (22%)
Query: 7 IYNETLLTFAKLASNKLQNLYQKELDDISRIRLLYKLP---FIRERIAKCYFWILGVR-- 61
+ NE L KL N +Q+++Q+E+ +++ LP F RER + YF +
Sbjct: 486 VNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAAGTYE 545
Query: 62 --------ILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCH- 108
+ TKV + + +DD+YD YG + EL+ FT A+ S + LP YMKLC+
Sbjct: 546 PQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQ 605
Query: 109 ------------------RGLLEM-----KNVVKIYFFEAKWYHQNYVSSMKEYMTVALD 145
R L+ ++ + Y+ EA+W YV ++ EY+ +
Sbjct: 606 IYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGIT 665
Query: 146 CLHP---ILMGIL 155
+ +L G+L
Sbjct: 666 SIGQRILLLSGVL 678
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 46/193 (23%)
Query: 6 KIYNETLLTFAKLASNKLQNLYQKELDDISRI---RLLYKLPFIRERIAKCYFWIL---- 58
+ N L AKL N +Q+L+Q+EL ++R + + F R R+A+ YF
Sbjct: 428 SLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYFSSATFEP 487
Query: 59 ---GVRI-LTKVVSMTSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHR- 109
RI TK+ + DD+ D++ + EL+ FT ++ S + ++P+ M+ C +
Sbjct: 488 EYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKV 547
Query: 110 --GLLEMKN--VVKI-------------------YFFEAKWYHQNYVSSMKEYM-----T 141
L+E N VVK+ Y E +W Y+ + +EY+ +
Sbjct: 548 WFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAIS 607
Query: 142 VALD--CLHPILM 152
V L L PIL+
Sbjct: 608 VGLGPCTLQPILL 620
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 154 ILNLTHAIDVIYKYEDGYTHVGIVLKDFVVSLLVNPM 190
I NL + + YK+ DGY +KD++ + ++P+
Sbjct: 718 IFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPI 754
>pdb|4E5V|A Chain A, Crystal Structure Of A Putative Thua-Like Protein
(Parmer_02418) From Parabacteroides Merdae Atcc 43184 At
1.75 A Resolution
pdb|4E5V|B Chain B, Crystal Structure Of A Putative Thua-Like Protein
(Parmer_02418) From Parabacteroides Merdae Atcc 43184 At
1.75 A Resolution
Length = 281
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 92 AIESAIDKLPKYMKLCHRGLLEMKNVVK---IYFFEAKWYHQNYV------SSMKEYMTV 142
A ++A K P++ ++C G E +N +Y+ + K + EY+
Sbjct: 94 AADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKDGKLVKDSSAGPGGSHGRQHEYVLN 153
Query: 143 ALDCLHPILMGI-LNLTHAIDVIYKYEDGYTHVGIVL 178
D +HP++ G+ L HA D +Y G ++ +L
Sbjct: 154 GRDKVHPVVKGLPLKWRHAKDELYDRXRGPGNIRDIL 190
>pdb|1AJ0|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Dihydropteroate Synthase
pdb|1AJ2|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli
Dihydropteroate Synthase
pdb|1AJZ|A Chain A, Structure Of Dihydropteroate Pyrophosphorylase
Length = 282
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 142 VALDCLHPILMGILNLTHAIDVIYKYEDGYTHVGIVLKDFVVSLLVN 188
+LD HP +MGILN+T + DG TH ++ +L++N
Sbjct: 8 TSLDLSHPHVMGILNVT-----PDSFSDGGTHNSLIDAVKHANLMIN 49
>pdb|1PQZ|A Chain A, Murine Cytomegalovirus Immunomodulatory Protein M144
Length = 238
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 57 ILGVRILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIESAID---KLPKYMKL 106
++GV+ + V TS I+ Y G E + TSA E A D KL +Y KL
Sbjct: 81 VIGVKTVQLDVGCTSKIEKHYAYDGNETEDDTATSASERARDCQKKLTEYRKL 133
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 65 KVVSMTSAIDDIYDVYGKIKELEPFTSAIESAIDKLPKYMKLCHRGLL----EMKNVVKI 120
KVV +D Y K+ EL+ + E I+K+ KY L L E+ + +
Sbjct: 155 KVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFA 214
Query: 121 YFFEAKW 127
F E K+
Sbjct: 215 EFTEGKY 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,432,237
Number of Sequences: 62578
Number of extensions: 207318
Number of successful extensions: 695
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 40
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)