Query 045169
Match_columns 192
No_of_seqs 115 out of 701
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02279 ent-kaur-16-ene synth 100.0 3.6E-58 7.8E-63 443.2 20.8 184 7-192 450-778 (784)
2 cd00684 Terpene_cyclase_plant_ 100.0 2E-56 4.4E-61 417.8 21.4 186 4-189 213-542 (542)
3 PLN02592 ent-copalyl diphospha 100.0 1.3E-41 2.9E-46 328.1 15.9 178 7-191 498-800 (800)
4 PF03936 Terpene_synth_C: Terp 99.9 7E-23 1.5E-27 172.7 14.6 133 12-144 1-176 (270)
5 cd00868 Terpene_cyclase_C1 Ter 99.8 1E-17 2.2E-22 142.2 14.0 119 26-144 1-161 (284)
6 PLN02150 terpene synthase/cycl 99.6 4.2E-16 9.1E-21 116.3 4.9 45 148-192 51-96 (96)
7 cd00687 Terpene_cyclase_nonpla 99.0 2.4E-09 5.2E-14 92.6 8.6 112 33-144 18-168 (303)
8 cd00385 Isoprenoid_Biosyn_C1 I 97.5 0.0008 1.7E-08 53.8 9.3 81 61-144 17-117 (243)
9 PF14165 YtzH: YtzH-like prote 51.3 55 0.0012 24.1 5.4 44 69-112 10-56 (87)
10 PRK13743 conjugal transfer pro 32.1 83 0.0018 25.0 4.1 32 47-79 33-64 (141)
11 COG2443 Sss1 Preprotein transl 28.3 1.3E+02 0.0028 21.0 4.1 13 132-144 26-38 (65)
No 1
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=3.6e-58 Score=443.21 Aligned_cols=184 Identities=27% Similarity=0.414 Sum_probs=173.4
Q ss_pred cccHhHHHHHHHhhHHHHHHhHHHHhHhhhh---ccCCCCCccchhhhHHHHHHHHH----------HHHHHHHHHHHHH
Q 045169 7 IYNETLLTFAKLASNKLQNLYQKELDDISRI---RLLYKLPFIRERIAKCYFWILGV----------RILTKVVSMTSAI 73 (192)
Q Consensus 7 ~~n~~lLelAKldFn~~Q~~hq~El~~lsrW---~~~~~l~f~Rdr~ve~yf~~~~~----------i~~aK~~~l~t~l 73 (192)
.+|+++|||||+|||+||++||+||++|+|| ...++|||+|||++|||||++|+ ++|||+++|+|++
T Consensus 450 ~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tvi 529 (784)
T PLN02279 450 ICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRLDKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVV 529 (784)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCCccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999 33379999999999999999999 9999999999999
Q ss_pred HHHhhhcCChhhhHHHHHHHH----H-HhhhCchhHHHHHHHHH------------------------HHHHHHHHHHHH
Q 045169 74 DDIYDVYGKIKELEPFTSAIE----S-AIDKLPKYMKLCHRGLL------------------------EMKNVVKIYFFE 124 (192)
Q Consensus 74 DD~~D~ygt~eEl~~ft~ai~----~-~~~~Lp~ymk~~f~~l~------------------------~~~~l~~~yl~E 124 (192)
||+||+|||+|||++||+||| + +++.+|+|||+||.+++ +|++++++|++|
T Consensus 530 DD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~ll~ayl~E 609 (784)
T PLN02279 530 DDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLDLLKSMLTE 609 (784)
T ss_pred HHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 4 56899999999999999 899999999999
Q ss_pred HHHhcCCCccCHHHHHHHHH------------------------------------------------------------
Q 045169 125 AKWYHQNYVSSMKEYMTVAL------------------------------------------------------------ 144 (192)
Q Consensus 125 akW~~~~~~Ps~eEYl~~~~------------------------------------------------------------ 144 (192)
|+|+++||+||+||||+||.
T Consensus 610 AeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~l~eev~e~~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~n 689 (784)
T PLN02279 610 AQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPKLSEEVVDSPELHKLYKLMSTCGRLLNDIRGFKRESKEGKLN 689 (784)
T ss_pred HHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCCCCHHHHhCcchhHHHHHHHHHHHHHHhccccHhHHhCCCcc
Confidence 99999999999999999987
Q ss_pred --Hh---------------------------------H--------HHHHHHHHHHhhhhhhhcccCCCCCCCchhHHHH
Q 045169 145 --DC---------------------------------L--------HPILMGILNLTHAIDVIYKYEDGYTHVGIVLKDF 181 (192)
Q Consensus 145 --ec---------------------------------l--------~~~~~~~~n~aR~~~~~Y~~~Dgft~~~~~lkd~ 181 (192)
+| | ++|+++++|+||+++++|+++||||.+ +||++
T Consensus 690 sV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~ 767 (784)
T PLN02279 690 AVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSL 767 (784)
T ss_pred eehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhhhhheeCCCCCChH--HHHHH
Confidence 11 1 899999999999999999999999964 69999
Q ss_pred HHHhhhcccCC
Q 045169 182 VVSLLVNPMPL 192 (192)
Q Consensus 182 I~sll~ePv~i 192 (192)
|+++|++||++
T Consensus 768 i~~ll~ePi~l 778 (784)
T PLN02279 768 VKSVIYEPVSL 778 (784)
T ss_pred HHHHhccCCcC
Confidence 99999999985
No 2
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=2e-56 Score=417.76 Aligned_cols=186 Identities=51% Similarity=0.840 Sum_probs=178.0
Q ss_pred ccccccHhHHHHHHHhhHHHHHHhHHHHhHhhhh----ccCCCCCccchhhhHHHHHHHHH----------HHHHHHHHH
Q 045169 4 CKKIYNETLLTFAKLASNKLQNLYQKELDDISRI----RLLYKLPFIRERIAKCYFWILGV----------RILTKVVSM 69 (192)
Q Consensus 4 ~~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrW----~~~~~l~f~Rdr~ve~yf~~~~~----------i~~aK~~~l 69 (192)
.++++|++||||||+|||+||++||+||++++|| ++.++|||+|+|++|||||++|+ +++||.+++
T Consensus 213 ~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l 292 (542)
T cd00684 213 QEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIAL 292 (542)
T ss_pred CCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999 78888899999999999999999 889999999
Q ss_pred HHHHHHHhhhcCChhhhHHHHHHHH----HHhhhCchhHHHHHHHHH------------------------HHHHHHHHH
Q 045169 70 TSAIDDIYDVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRGLL------------------------EMKNVVKIY 121 (192)
Q Consensus 70 ~t~lDD~~D~ygt~eEl~~ft~ai~----~~~~~Lp~ymk~~f~~l~------------------------~~~~l~~~y 121 (192)
++++||+||+|||.||++.||+||+ ++++++|+|||+||.+++ .|++++++|
T Consensus 293 ~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~ 372 (542)
T cd00684 293 ITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAY 372 (542)
T ss_pred HhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 789999999999999999 899999999
Q ss_pred HHHHHHhcCCCccCHHHHHHHHH---------------------------------------------------------
Q 045169 122 FFEAKWYHQNYVSSMKEYMTVAL--------------------------------------------------------- 144 (192)
Q Consensus 122 l~EakW~~~~~~Ps~eEYl~~~~--------------------------------------------------------- 144 (192)
++||+|+++||+||++|||+++.
T Consensus 373 l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~r 452 (542)
T cd00684 373 LVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKR 452 (542)
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhc
Confidence 99999999999999999999998
Q ss_pred -------Hh-------------------------------H-------HHHHHHHHHHhhhhhhhcccCCCCCCCchhHH
Q 045169 145 -------DC-------------------------------L-------HPILMGILNLTHAIDVIYKYEDGYTHVGIVLK 179 (192)
Q Consensus 145 -------ec-------------------------------l-------~~~~~~~~n~aR~~~~~Y~~~Dgft~~~~~lk 179 (192)
+| + ++|+++++|+||+++++|+++||||.|++.+|
T Consensus 453 Gdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~ 532 (542)
T cd00684 453 GDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIK 532 (542)
T ss_pred CCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHH
Confidence 11 1 89999999999999999999999999988899
Q ss_pred HHHHHhhhcc
Q 045169 180 DFVVSLLVNP 189 (192)
Q Consensus 180 d~I~sll~eP 189 (192)
++|++||++|
T Consensus 533 ~~i~~ll~~p 542 (542)
T cd00684 533 DHITSLLFEP 542 (542)
T ss_pred HHHHHHhcCC
Confidence 9999999998
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.3e-41 Score=328.05 Aligned_cols=178 Identities=18% Similarity=0.191 Sum_probs=152.2
Q ss_pred cccHhHHHHHHHhhHHHHHHhHHHHhHhhhh----ccCCCCCccchhhhHHHHHHHHH----------HHHHHHHHHHHH
Q 045169 7 IYNETLLTFAKLASNKLQNLYQKELDDISRI----RLLYKLPFIRERIAKCYFWILGV----------RILTKVVSMTSA 72 (192)
Q Consensus 7 ~~n~~lLelAKldFn~~Q~~hq~El~~lsrW----~~~~~l~f~Rdr~ve~yf~~~~~----------i~~aK~~~l~t~ 72 (192)
.+|++||||||+|||+||++||+||++++|| ++ .+|||+|||++|||||++|+ ++|||+++|+|+
T Consensus 498 ~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~Litv 576 (800)
T PLN02592 498 VNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELLLAYFLAAASIFEPERSHERLAWAKTTVLVEA 576 (800)
T ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999 55 69999999999999999999 999999999999
Q ss_pred HHHHhhhcCChhhhHHHHHHHH------------HHhhhCch------hHHHHHHHHH----------------------
Q 045169 73 IDDIYDVYGKIKELEPFTSAIE------------SAIDKLPK------YMKLCHRGLL---------------------- 112 (192)
Q Consensus 73 lDD~~D~ygt~eEl~~ft~ai~------------~~~~~Lp~------ymk~~f~~l~---------------------- 112 (192)
+||+||+|||+|||++||++|+ +++++||+ |||+||.++|
T Consensus 577 iDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~mki~f~aLy~tineia~~a~~~qGr~v~~~L 656 (800)
T PLN02592 577 ISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTGEELVGLLLGTLNQLSLDALEAHGRDISHLL 656 (800)
T ss_pred hcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 9999999999999999999994 58889988 9999999999
Q ss_pred --HHHHHHHHHHHHHHHhcCCCccCH------------------HHHHHHHH----------------------------
Q 045169 113 --EMKNVVKIYFFEAKWYHQNYVSSM------------------KEYMTVAL---------------------------- 144 (192)
Q Consensus 113 --~~~~l~~~yl~EakW~~~~~~Ps~------------------eEYl~~~~---------------------------- 144 (192)
+|.+++++++.|+.|..++..=.+ .||.+-..
T Consensus 657 ~~~W~~l~~~w~~~g~~s~~~~~ilv~~~~l~~g~~lsee~l~~~~~~~l~~li~Rl~nDl~t~~~e~~~~~~~~~~a~~ 736 (800)
T PLN02592 657 RHAWEMWLLKWLLEGDGRQGEAELLVKTINLTAGRSLSEELLAHPQYEQLAQLTNRICYQLGHYKKNKVHINTYNPEEKS 736 (800)
T ss_pred HHHHHHHHHHHHhcCceeccchhhHHHHHHHhcCCCCCHHHccchhHHHHHHHHHHHHHhhhHHhhhcccCCcccHHHHH
Confidence 899999998888888753221011 12222111
Q ss_pred -------Hh---------------H-HHHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHHhhhcccC
Q 045169 145 -------DC---------------L-HPILMGILNLTHAIDVIYKYEDGYTHVGIVLKDFVVSLLVNPMP 191 (192)
Q Consensus 145 -------ec---------------l-~~~~~~~~n~aR~~~~~Y~~~Dgft~~~~~lkd~I~sll~ePv~ 191 (192)
.| + ++|++.++|++| ++|.. ||+.|+ +|+++|..+++|||+
T Consensus 737 ~~~~~ie~~~~eL~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~~-~~~~~i~~vl~epv~ 800 (800)
T PLN02592 737 KTTPSIESDMQELVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDPG-TINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCHH-HHHHHHHHHhCCCCC
Confidence 00 1 899999999999 45655 999985 799999999999985
No 4
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=99.90 E-value=7e-23 Score=172.66 Aligned_cols=133 Identities=29% Similarity=0.439 Sum_probs=120.4
Q ss_pred HHHHHHHhhHHHHHHhHHHHhHhhhh----ccCCCCCccchhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Q 045169 12 LLTFAKLASNKLQNLYQKELDDISRI----RLLYKLPFIRERIAKCYFWILGV----------RILTKVVSMTSAIDDIY 77 (192)
Q Consensus 12 lLelAKldFn~~Q~~hq~El~~lsrW----~~~~~l~f~Rdr~ve~yf~~~~~----------i~~aK~~~l~t~lDD~~ 77 (192)
+|+|||+|||.||++||+|++++++| ++..+.+.+|+|++.++|+.++. +++||...++.++||.|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999 55466778899999999999887 88999999999999999
Q ss_pred hhcCChhhhHHHHHHHH----HHhhhCchhHHHHHHHHH-------------------------HHHHHHHHHHHHHHHh
Q 045169 78 DVYGKIKELEPFTSAIE----SAIDKLPKYMKLCHRGLL-------------------------EMKNVVKIYFFEAKWY 128 (192)
Q Consensus 78 D~ygt~eEl~~ft~ai~----~~~~~Lp~ymk~~f~~l~-------------------------~~~~l~~~yl~EakW~ 128 (192)
|..|+.++++.|+++++ ...+.+|++++.++.++. .|.+.+.+++.|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 677789999999988887 4677889999999999
Q ss_pred cCCCccCHHHHHHHHH
Q 045169 129 HQNYVSSMKEYMTVAL 144 (192)
Q Consensus 129 ~~~~~Ps~eEYl~~~~ 144 (192)
..|++||++||++...
T Consensus 161 ~~~~~ps~eeYl~~R~ 176 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRR 176 (270)
T ss_dssp HTTS--SHHHHHHHHH
T ss_pred ccCCCCCHHHHHHhcc
Confidence 9999999999999977
No 5
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=99.76 E-value=1e-17 Score=142.18 Aligned_cols=119 Identities=46% Similarity=0.846 Sum_probs=109.3
Q ss_pred HhHHHHhHhhhh----ccCCCCCccchhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhhhcCChhhhHHHHH
Q 045169 26 LYQKELDDISRI----RLLYKLPFIRERIAKCYFWILGV----------RILTKVVSMTSAIDDIYDVYGKIKELEPFTS 91 (192)
Q Consensus 26 ~hq~El~~lsrW----~~~~~l~f~Rdr~ve~yf~~~~~----------i~~aK~~~l~t~lDD~~D~ygt~eEl~~ft~ 91 (192)
.||+|++++++| ++....+++|.+..++|+|++++ +++||.+.++.++||.||.+|+.+|+..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 489999999999 55555559999999999999998 8999999999999999999999999999999
Q ss_pred HHH----HHhhhCchhHHHHHHHHH------------------------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Q 045169 92 AIE----SAIDKLPKYMKLCHRGLL------------------------EMKNVVKIYFFEAKWYHQNYVSSMKEYMTVA 143 (192)
Q Consensus 92 ai~----~~~~~Lp~ymk~~f~~l~------------------------~~~~l~~~yl~EakW~~~~~~Ps~eEYl~~~ 143 (192)
+++ ...+.+|++++.++.++. .|..++.++..|++|+.+|++||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R 160 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENR 160 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhc
Confidence 998 567889999999999988 6788899999999999999999999999887
Q ss_pred H
Q 045169 144 L 144 (192)
Q Consensus 144 ~ 144 (192)
.
T Consensus 161 ~ 161 (284)
T cd00868 161 R 161 (284)
T ss_pred e
Confidence 6
No 6
>PLN02150 terpene synthase/cyclase family protein
Probab=99.62 E-value=4.2e-16 Score=116.28 Aligned_cols=45 Identities=44% Similarity=0.733 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhhhhh-cccCCCCCCCchhHHHHHHHhhhcccCC
Q 045169 148 HPILMGILNLTHAIDVI-YKYEDGYTHVGIVLKDFVVSLLVNPMPL 192 (192)
Q Consensus 148 ~~~~~~~~n~aR~~~~~-Y~~~Dgft~~~~~lkd~I~sll~ePv~i 192 (192)
+|++++++|+||+++++ |++|||||.|++.+|++|++||++||||
T Consensus 51 ~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 51 RPVLVRCLNLARLIDVYCYNEGDGFTYPHGKLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHHHHHHHhheecCCCCCCCCcHHHHHHHHHHhccCCCC
Confidence 89999999999999999 9999999998888999999999999986
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=98.96 E-value=2.4e-09 Score=92.62 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=83.6
Q ss_pred Hhhhh-ccCCCC--CccchhhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhcC-ChhhhHHHHHHHHHHh
Q 045169 33 DISRI-RLLYKL--PFIRERIAKCYFWILGV-----------RILTKVVSMTSAIDDIYDVYG-KIKELEPFTSAIESAI 97 (192)
Q Consensus 33 ~lsrW-~~~~~l--~f~Rdr~ve~yf~~~~~-----------i~~aK~~~l~t~lDD~~D~yg-t~eEl~~ft~ai~~~~ 97 (192)
+...| .....+ +.+|+|..+++|+.++. .+.++...++.++||.||..| +.++++.+++.+....
T Consensus 18 ~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~ 97 (303)
T cd00687 18 EYLEWVLEEMLIPSEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDIL 97 (303)
T ss_pred HHHHHHHHcCCCCcchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhcc
Confidence 35667 221233 37899999988877666 577899999999999999984 8999999887666211
Q ss_pred h--hCc--hhHHHHHHHHH--------------------HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Q 045169 98 D--KLP--KYMKLCHRGLL--------------------EMKNVVKIYFFEAKWYHQNYVSSMKEYMTVAL 144 (192)
Q Consensus 98 ~--~Lp--~ymk~~f~~l~--------------------~~~~l~~~yl~EakW~~~~~~Ps~eEYl~~~~ 144 (192)
. ..| .....+..++. .|.+.+.+++.|++|+.+|++||++||+++..
T Consensus 98 ~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~ 168 (303)
T cd00687 98 RGDGLDSPDDATPLEFGLADLWRRTLARMSAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRR 168 (303)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhh
Confidence 1 122 33333333333 67889999999999999999999999999987
No 8
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=97.52 E-value=0.0008 Score=53.76 Aligned_cols=81 Identities=23% Similarity=0.369 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHhhhCchhHHHH-------------------HHHHH-HHHHHHHH
Q 045169 61 RILTKVVSMTSAIDDIYDVYGKIKELEPFTSAIESAIDKLPKYMKLC-------------------HRGLL-EMKNVVKI 120 (192)
Q Consensus 61 i~~aK~~~l~t~lDD~~D~ygt~eEl~~ft~ai~~~~~~Lp~ymk~~-------------------f~~l~-~~~~l~~~ 120 (192)
..+++......++||++|..++..+.......+. ....|..+... +..+. .|.+++.+
T Consensus 17 ~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (243)
T cd00385 17 AAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVA--IDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLLEG 94 (243)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHH--hcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999988777655444321 00111111111 11111 78899999
Q ss_pred HHHHHHHhcCCCccCHHHHHHHHH
Q 045169 121 YFFEAKWYHQNYVSSMKEYMTVAL 144 (192)
Q Consensus 121 yl~EakW~~~~~~Ps~eEYl~~~~ 144 (192)
+..|+.|... +.||++||++...
T Consensus 95 ~~~d~~~~~~-~~~t~~ey~~~~~ 117 (243)
T cd00385 95 QLLDLKWRRE-YVPTLEEYLEYCR 117 (243)
T ss_pred HHHHHHhccC-CCCCHHHHHHHHH
Confidence 9999999876 8999999999876
No 9
>PF14165 YtzH: YtzH-like protein
Probab=51.26 E-value=55 Score=24.12 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHHHH-hhhcCChhhhHHHHHHHHHHh--hhCchhHHHHHHHHH
Q 045169 69 MTSAIDDI-YDVYGKIKELEPFTSAIESAI--DKLPKYMKLCHRGLL 112 (192)
Q Consensus 69 l~t~lDD~-~D~ygt~eEl~~ft~ai~~~~--~~Lp~ymk~~f~~l~ 112 (192)
|--++++- -|.+||..|++.....|++.+ ..++..+|.+...+|
T Consensus 10 LkDIL~~hq~DccgTvsEcEQieRLvksLm~n~~i~~~ik~~L~~Iy 56 (87)
T PF14165_consen 10 LKDILSNHQLDCCGTVSECEQIERLVKSLMANPNIDADIKQTLEEIY 56 (87)
T ss_pred HHHHHHhhhhhccCcHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 33334333 588999999999999999433 467888888666655
No 10
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=32.15 E-value=83 Score=24.98 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=25.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045169 47 RERIAKCYFWILGVRILTKVVSMTSAIDDIYDV 79 (192)
Q Consensus 47 Rdr~ve~yf~~~~~i~~aK~~~l~t~lDD~~D~ 79 (192)
|.|..+.|||.. +.++|--+++.++++++||.
T Consensus 33 ~~R~~~~Y~~Lf-iVFl~AG~vLw~vM~~iFd~ 64 (141)
T PRK13743 33 ERRVSDIYFDLF-IVFLTAGIVLWVIMHSIFDA 64 (141)
T ss_pred HHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Confidence 457788999865 45778888899999999987
No 11
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=28.35 E-value=1.3e+02 Score=20.96 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=11.1
Q ss_pred CccCHHHHHHHHH
Q 045169 132 YVSSMKEYMTVAL 144 (192)
Q Consensus 132 ~~Ps~eEYl~~~~ 144 (192)
..||-|||.+.+.
T Consensus 26 rKP~~eEy~~~aK 38 (65)
T COG2443 26 RKPDWEEYSKIAK 38 (65)
T ss_pred hCCCHHHHHHHHH
Confidence 3799999999875
Done!