Query 045170
Match_columns 135
No_of_seqs 105 out of 351
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 10:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03492 Methyltransf_7: SAM d 100.0 3.5E-46 7.6E-51 313.7 6.4 102 25-126 13-129 (334)
2 PLN02668 indole-3-acetate carb 100.0 3.2E-43 7E-48 302.8 7.8 123 8-130 36-188 (386)
3 TIGR02072 BioC biotin biosynth 97.4 0.00042 9.2E-09 52.8 5.6 98 9-119 16-113 (240)
4 PF08241 Methyltransf_11: Meth 96.9 0.0023 4.9E-08 41.7 4.5 73 33-117 1-73 (95)
5 PRK06202 hypothetical protein; 96.8 0.005 1.1E-07 48.4 7.1 83 27-119 59-144 (232)
6 PRK01683 trans-aconitate 2-met 96.6 0.0038 8.3E-08 49.5 5.0 78 27-119 30-108 (258)
7 TIGR02752 MenG_heptapren 2-hep 96.3 0.0068 1.5E-07 47.1 4.8 86 28-120 45-130 (231)
8 PRK10258 biotin biosynthesis p 96.1 0.017 3.7E-07 45.7 6.0 78 28-120 42-119 (251)
9 PRK14103 trans-aconitate 2-met 95.9 0.016 3.4E-07 46.3 5.0 77 27-119 28-104 (255)
10 PRK00216 ubiE ubiquinone/menaq 95.8 0.018 3.8E-07 44.1 4.8 87 29-121 52-138 (239)
11 TIGR03587 Pse_Me-ase pseudamin 95.6 0.0079 1.7E-07 47.4 2.3 78 27-118 42-119 (204)
12 TIGR00740 methyltransferase, p 95.4 0.025 5.5E-07 44.6 4.5 84 27-118 52-136 (239)
13 PF13847 Methyltransf_31: Meth 95.3 0.1 2.3E-06 38.1 7.2 85 28-120 3-89 (152)
14 PF13489 Methyltransf_23: Meth 95.1 0.0082 1.8E-07 43.0 0.8 72 26-119 20-93 (161)
15 PRK05785 hypothetical protein; 94.9 0.042 9.2E-07 43.8 4.4 77 29-122 52-128 (226)
16 PF08242 Methyltransf_12: Meth 94.8 0.031 6.6E-07 37.8 3.0 79 33-117 1-79 (99)
17 PRK15451 tRNA cmo(5)U34 methyl 94.8 0.072 1.6E-06 42.6 5.5 84 27-118 55-139 (247)
18 TIGR01934 MenG_MenH_UbiE ubiqu 94.7 0.1 2.2E-06 39.5 5.9 83 28-119 39-121 (223)
19 KOG2940 Predicted methyltransf 94.7 0.021 4.5E-07 48.5 2.2 82 30-124 74-157 (325)
20 PRK08317 hypothetical protein; 94.3 0.22 4.8E-06 37.6 7.0 84 27-119 18-102 (241)
21 PRK11188 rrmJ 23S rRNA methylt 94.2 0.077 1.7E-06 41.9 4.3 90 11-118 31-131 (209)
22 PTZ00098 phosphoethanolamine N 94.0 0.12 2.5E-06 42.1 5.2 81 27-118 51-131 (263)
23 PLN02490 MPBQ/MSBQ methyltrans 94.0 0.096 2.1E-06 45.1 4.9 81 28-119 113-193 (340)
24 PF13649 Methyltransf_25: Meth 94.0 0.024 5.3E-07 38.8 1.0 79 32-119 1-83 (101)
25 COG2226 UbiE Methylase involve 93.9 0.061 1.3E-06 44.3 3.4 89 28-125 51-140 (238)
26 PRK12335 tellurite resistance 93.6 0.091 2E-06 43.0 3.8 77 30-118 122-198 (287)
27 PLN02336 phosphoethanolamine N 93.5 0.16 3.5E-06 44.0 5.5 83 27-119 265-347 (475)
28 PRK11207 tellurite resistance 93.5 0.1 2.3E-06 40.4 3.9 79 29-118 31-109 (197)
29 PRK00121 trmB tRNA (guanine-N( 93.4 0.2 4.2E-06 39.1 5.3 83 28-118 40-125 (202)
30 PLN02233 ubiquinone biosynthes 93.4 0.31 6.8E-06 39.6 6.6 88 27-119 72-160 (261)
31 PRK06922 hypothetical protein; 93.3 0.18 4E-06 47.3 5.7 83 29-121 419-505 (677)
32 TIGR00477 tehB tellurite resis 93.3 0.077 1.7E-06 41.1 2.8 78 29-118 31-108 (195)
33 TIGR02716 C20_methyl_CrtF C-20 92.8 0.36 7.8E-06 39.6 6.2 81 26-117 147-228 (306)
34 PF03848 TehB: Tellurite resis 92.6 0.18 3.9E-06 40.3 4.1 80 28-119 30-109 (192)
35 smart00138 MeTrc Methyltransfe 92.3 0.21 4.6E-06 40.8 4.2 38 27-64 98-142 (264)
36 PRK11873 arsM arsenite S-adeno 92.0 0.7 1.5E-05 37.0 6.9 86 27-119 76-161 (272)
37 PRK15068 tRNA mo(5)U34 methylt 91.9 0.36 7.9E-06 40.7 5.3 82 29-119 123-204 (322)
38 PLN02244 tocopherol O-methyltr 91.8 0.36 7.8E-06 40.7 5.3 84 27-119 117-201 (340)
39 cd02440 AdoMet_MTases S-adenos 91.5 0.41 8.9E-06 30.0 4.1 78 31-117 1-79 (107)
40 PLN02336 phosphoethanolamine N 91.2 0.29 6.2E-06 42.5 4.1 78 29-119 38-118 (475)
41 PRK11036 putative S-adenosyl-L 90.7 0.34 7.4E-06 38.7 3.8 82 27-119 43-127 (255)
42 TIGR02081 metW methionine bios 90.0 0.6 1.3E-05 35.7 4.5 76 28-119 13-90 (194)
43 PRK11088 rrmA 23S rRNA methylt 89.8 0.43 9.4E-06 38.6 3.8 79 28-118 85-165 (272)
44 PRK14121 tRNA (guanine-N(7)-)- 89.6 0.61 1.3E-05 41.2 4.8 84 29-118 123-206 (390)
45 PTZ00146 fibrillarin; Provisio 89.4 1.2 2.6E-05 37.9 6.4 55 3-62 110-165 (293)
46 smart00828 PKS_MT Methyltransf 89.2 0.87 1.9E-05 35.1 4.9 81 31-119 2-82 (224)
47 PF01209 Ubie_methyltran: ubiE 88.8 0.31 6.7E-06 39.4 2.2 86 27-122 46-134 (233)
48 TIGR00452 methyltransferase, p 88.7 0.89 1.9E-05 38.6 5.0 81 29-118 122-202 (314)
49 TIGR00091 tRNA (guanine-N(7)-) 88.4 0.75 1.6E-05 35.5 4.1 83 29-119 17-102 (194)
50 PF12847 Methyltransf_18: Meth 88.3 0.36 7.7E-06 32.8 2.0 31 30-62 3-33 (112)
51 KOG3010 Methyltransferase [Gen 88.1 0.7 1.5E-05 39.1 3.9 18 101-118 97-114 (261)
52 PRK09489 rsmC 16S ribosomal RN 87.5 0.79 1.7E-05 39.2 4.0 76 30-116 198-273 (342)
53 PRK00312 pcm protein-L-isoaspa 86.8 2.9 6.4E-05 32.2 6.6 81 27-117 77-157 (212)
54 PRK13944 protein-L-isoaspartat 86.7 0.66 1.4E-05 36.2 2.9 33 29-62 73-105 (205)
55 TIGR03438 probable methyltrans 86.2 1.5 3.2E-05 36.4 4.9 86 27-118 62-152 (301)
56 PF05175 MTS: Methyltransferas 85.4 1.4 3.1E-05 33.2 4.1 76 28-112 31-106 (170)
57 COG4106 Tam Trans-aconitate me 85.4 0.61 1.3E-05 39.2 2.2 78 27-121 29-109 (257)
58 PLN02396 hexaprenyldihydroxybe 84.1 1.4 3.1E-05 37.5 3.9 82 29-119 132-213 (322)
59 PRK15001 SAM-dependent 23S rib 83.5 3.8 8.2E-05 35.9 6.4 85 30-121 230-315 (378)
60 TIGR01983 UbiG ubiquinone bios 83.2 2.3 5E-05 32.5 4.5 83 27-119 44-127 (224)
61 PF00891 Methyltransf_2: O-met 81.6 2.6 5.7E-05 33.1 4.3 74 26-117 98-171 (241)
62 PRK13942 protein-L-isoaspartat 80.1 7.1 0.00015 30.6 6.3 81 28-115 76-156 (212)
63 TIGR02469 CbiT precorrin-6Y C5 79.3 1.5 3.3E-05 29.8 2.0 33 29-63 20-52 (124)
64 COG2264 PrmA Ribosomal protein 78.9 0.83 1.8E-05 39.1 0.7 33 14-48 150-182 (300)
65 PF06325 PrmA: Ribosomal prote 76.3 1.5 3.2E-05 37.2 1.4 33 14-48 149-181 (295)
66 PF05148 Methyltransf_8: Hypot 73.4 1.7 3.7E-05 35.9 1.1 18 26-43 70-87 (219)
67 PRK04266 fibrillarin; Provisio 73.3 2.4 5.3E-05 34.1 2.0 32 29-62 73-104 (226)
68 PRK09328 N5-glutamine S-adenos 72.7 2.9 6.2E-05 33.1 2.3 34 28-63 108-141 (275)
69 TIGR00138 gidB 16S rRNA methyl 72.3 3.1 6.8E-05 32.1 2.3 81 29-119 43-123 (181)
70 PF09243 Rsm22: Mitochondrial 71.9 7.9 0.00017 31.9 4.8 104 8-118 13-116 (274)
71 PRK07580 Mg-protoporphyrin IX 71.6 3 6.5E-05 32.0 2.1 22 27-48 62-83 (230)
72 TIGR00406 prmA ribosomal prote 71.0 2 4.4E-05 35.3 1.1 31 29-62 160-190 (288)
73 PRK00107 gidB 16S rRNA methylt 70.8 3.6 7.8E-05 32.2 2.4 34 27-62 44-77 (187)
74 COG2230 Cfa Cyclopropane fatty 70.4 3.8 8.1E-05 34.9 2.6 64 6-75 54-142 (283)
75 PRK08287 cobalt-precorrin-6Y C 69.4 3.6 7.8E-05 31.1 2.1 33 28-62 31-63 (187)
76 TIGR00478 tly hemolysin TlyA f 69.2 3 6.5E-05 34.0 1.7 36 27-65 74-109 (228)
77 TIGR00080 pimt protein-L-isoas 68.1 4.2 9.2E-05 31.6 2.3 35 27-62 76-110 (215)
78 PF01728 FtsJ: FtsJ-like methy 67.5 5.6 0.00012 29.8 2.8 37 28-65 23-59 (181)
79 KOG3045 Predicted RNA methylas 66.8 5.5 0.00012 34.5 2.8 69 25-95 177-269 (325)
80 TIGR02021 BchM-ChlM magnesium 66.7 4.4 9.5E-05 31.3 2.1 22 27-48 54-75 (219)
81 PRK00517 prmA ribosomal protei 66.5 2.4 5.1E-05 34.0 0.6 21 27-47 118-138 (250)
82 TIGR00438 rrmJ cell division p 66.1 4.7 0.0001 30.6 2.1 24 27-50 31-54 (188)
83 COG2518 Pcm Protein-L-isoaspar 65.2 9.2 0.0002 31.2 3.7 72 27-110 71-170 (209)
84 TIGR00537 hemK_rel_arch HemK-r 64.5 4 8.7E-05 30.6 1.5 30 29-62 20-49 (179)
85 smart00650 rADc Ribosomal RNA 64.0 4.5 9.8E-05 30.2 1.6 21 29-49 14-34 (169)
86 PF02390 Methyltransf_4: Putat 62.6 22 0.00049 27.8 5.4 81 31-117 20-101 (195)
87 PF02353 CMAS: Mycolic acid cy 61.8 8.1 0.00017 32.0 2.9 38 8-49 46-83 (273)
88 TIGR03534 RF_mod_PrmC protein- 59.8 5.5 0.00012 30.8 1.5 75 28-111 87-161 (251)
89 TIGR03840 TMPT_Se_Te thiopurin 58.5 6.2 0.00013 31.4 1.6 22 28-49 34-55 (213)
90 KOG0670 U4/U6-associated splic 58.5 4.4 9.6E-05 38.2 0.9 69 5-76 540-652 (752)
91 PRK01544 bifunctional N5-gluta 57.9 8.1 0.00018 34.7 2.4 32 29-62 139-170 (506)
92 PRK01544 bifunctional N5-gluta 57.8 19 0.00041 32.4 4.7 106 6-117 322-430 (506)
93 COG2263 Predicted RNA methylas 57.5 6.1 0.00013 32.2 1.5 19 29-47 46-64 (198)
94 TIGR00563 rsmB ribosomal RNA s 57.3 22 0.00047 30.9 4.9 87 29-122 239-330 (426)
95 PF13659 Methyltransf_26: Meth 57.2 10 0.00022 25.8 2.3 21 30-50 2-22 (117)
96 PRK14968 putative methyltransf 57.0 7.5 0.00016 28.6 1.7 21 29-49 24-44 (188)
97 TIGR00536 hemK_fam HemK family 56.5 9 0.00019 31.3 2.3 31 30-62 116-146 (284)
98 PRK00274 ksgA 16S ribosomal RN 56.2 7.8 0.00017 31.6 1.9 42 28-69 42-103 (272)
99 PRK07402 precorrin-6B methylas 55.8 10 0.00022 28.9 2.3 21 28-48 40-60 (196)
100 PLN02585 magnesium protoporphy 54.7 8.4 0.00018 32.7 1.9 22 28-49 144-165 (315)
101 PF08003 Methyltransf_9: Prote 54.7 7.5 0.00016 33.7 1.6 20 29-48 116-135 (315)
102 KOG2361 Predicted methyltransf 54.5 20 0.00044 30.5 4.1 80 31-113 74-153 (264)
103 PRK14967 putative methyltransf 54.4 6.3 0.00014 30.8 1.0 31 29-62 37-67 (223)
104 PRK11705 cyclopropane fatty ac 53.2 11 0.00024 32.6 2.5 22 28-49 167-188 (383)
105 PF14737 DUF4470: Domain of un 52.8 13 0.00029 25.9 2.4 61 11-74 2-70 (100)
106 COG4123 Predicted O-methyltran 52.5 8.4 0.00018 32.1 1.5 24 26-49 42-65 (248)
107 PF07021 MetW: Methionine bios 52.3 7.6 0.00016 31.4 1.2 14 29-42 14-27 (193)
108 KOG1541 Predicted protein carb 52.2 9 0.0002 32.5 1.7 34 8-43 32-65 (270)
109 KOG2904 Predicted methyltransf 51.9 8.5 0.00018 33.5 1.5 40 31-70 151-216 (328)
110 PRK00377 cbiT cobalt-precorrin 51.9 11 0.00024 28.9 2.0 21 28-48 40-60 (198)
111 TIGR03533 L3_gln_methyl protei 51.8 9.5 0.00021 31.5 1.7 32 29-62 122-153 (284)
112 TIGR03704 PrmC_rel_meth putati 49.5 10 0.00023 30.7 1.6 21 29-49 87-107 (251)
113 PRK11805 N5-glutamine S-adenos 48.0 15 0.00033 30.7 2.4 31 30-62 135-165 (307)
114 COG2813 RsmC 16S RNA G1207 met 47.7 11 0.00023 32.5 1.5 20 30-49 160-179 (300)
115 PRK13255 thiopurine S-methyltr 47.3 12 0.00027 29.8 1.7 23 27-49 36-58 (218)
116 COG1189 Predicted rRNA methyla 45.9 17 0.00038 30.5 2.4 25 25-49 76-100 (245)
117 PRK03522 rumB 23S rRNA methylu 45.7 13 0.00029 30.8 1.7 21 29-49 174-194 (315)
118 PRK05134 bifunctional 3-demeth 45.6 14 0.00029 28.7 1.7 21 28-48 48-68 (233)
119 PRK10909 rsmD 16S rRNA m(2)G96 45.6 13 0.00028 29.4 1.6 21 29-49 54-74 (199)
120 PF13679 Methyltransf_32: Meth 44.9 15 0.00033 26.8 1.8 37 26-62 23-61 (141)
121 PF10294 Methyltransf_16: Puta 44.7 16 0.00034 27.9 1.9 83 27-116 44-131 (173)
122 PRK14896 ksgA 16S ribosomal RN 43.3 16 0.00034 29.5 1.7 22 28-49 29-50 (258)
123 cd05721 IgV_CTLA-4 Immunoglobu 43.2 14 0.0003 27.6 1.3 26 99-124 10-43 (115)
124 PHA03412 putative methyltransf 42.3 15 0.00033 30.6 1.6 21 29-49 50-70 (241)
125 TIGR00755 ksgA dimethyladenosi 42.3 18 0.00039 28.9 1.9 23 28-50 29-51 (253)
126 PF05868 Rotavirus_VP7: Rotavi 41.9 8.1 0.00018 32.5 -0.1 31 51-81 23-53 (249)
127 COG2890 HemK Methylase of poly 41.5 13 0.00029 30.8 1.1 30 31-62 113-142 (280)
128 PRK10901 16S rRNA methyltransf 41.3 13 0.00028 32.4 1.0 32 29-62 245-276 (427)
129 PRK13943 protein-L-isoaspartat 41.0 18 0.0004 30.8 1.9 21 28-48 80-100 (322)
130 PRK14901 16S rRNA methyltransf 39.9 15 0.00032 32.1 1.1 33 29-62 253-285 (434)
131 PRK13168 rumA 23S rRNA m(5)U19 38.4 22 0.00047 31.1 1.9 22 29-50 298-319 (443)
132 PLN03075 nicotianamine synthas 38.3 37 0.00081 29.0 3.3 94 28-127 123-218 (296)
133 KOG4589 Cell division protein 37.2 34 0.00074 28.5 2.8 42 9-50 47-91 (232)
134 PHA03411 putative methyltransf 37.1 22 0.00048 30.2 1.7 19 30-48 66-84 (279)
135 TIGR01444 fkbM_fam methyltrans 36.8 19 0.00041 25.4 1.1 19 31-49 1-19 (143)
136 COG2242 CobL Precorrin-6B meth 36.7 35 0.00076 27.5 2.8 19 29-47 35-53 (187)
137 PRK14966 unknown domain/N5-glu 36.0 21 0.00046 32.0 1.5 31 30-62 253-283 (423)
138 PRK14904 16S rRNA methyltransf 36.0 27 0.00059 30.6 2.2 20 29-48 251-270 (445)
139 PLN02232 ubiquinone biosynthes 35.7 25 0.00053 26.3 1.7 27 93-119 33-59 (160)
140 TIGR00095 RNA methyltransferas 34.8 28 0.0006 27.0 1.9 21 29-49 50-70 (189)
141 smart00400 ZnF_CHCC zinc finge 33.7 36 0.00079 21.3 2.0 23 29-51 21-43 (55)
142 PF04816 DUF633: Family of unk 33.6 26 0.00056 28.0 1.5 18 32-49 1-18 (205)
143 TIGR02085 meth_trns_rumB 23S r 31.9 27 0.00058 30.0 1.5 20 30-49 235-254 (374)
144 PF05185 PRMT5: PRMT5 arginine 31.6 29 0.00063 31.0 1.7 23 28-50 186-208 (448)
145 TIGR00446 nop2p NOL1/NOP2/sun 31.2 21 0.00044 29.0 0.6 21 29-49 72-92 (264)
146 KOG3191 Predicted N6-DNA-methy 31.2 54 0.0012 27.0 3.0 23 29-51 44-66 (209)
147 PRK14902 16S rRNA methyltransf 30.9 23 0.0005 30.9 0.9 33 29-62 251-283 (444)
148 PF01135 PCMT: Protein-L-isoas 30.8 32 0.00069 27.5 1.6 21 27-47 71-91 (209)
149 PF05401 NodS: Nodulation prot 29.9 44 0.00095 27.3 2.3 77 27-119 42-121 (201)
150 PRK11760 putative 23S rRNA C24 29.5 40 0.00088 29.8 2.2 23 27-49 210-232 (357)
151 PLN02781 Probable caffeoyl-CoA 29.5 35 0.00076 27.3 1.7 24 27-50 67-90 (234)
152 PRK04148 hypothetical protein; 29.4 66 0.0014 24.4 3.1 41 28-68 16-73 (134)
153 KOG3115 Methyltransferase-like 28.9 33 0.00071 28.9 1.4 17 29-45 61-77 (249)
154 KOG1540 Ubiquinone biosynthesi 28.2 1.5E+02 0.0033 25.6 5.4 92 27-124 99-197 (296)
155 TIGR00479 rumA 23S rRNA (uraci 27.8 39 0.00084 29.2 1.8 21 29-49 293-313 (431)
156 COG4976 Predicted methyltransf 27.5 32 0.00069 29.5 1.1 15 30-44 127-141 (287)
157 PF07757 AdoMet_MTase: Predict 27.0 32 0.0007 25.8 1.0 22 27-48 57-78 (112)
158 PF09445 Methyltransf_15: RNA 25.1 41 0.00088 26.3 1.3 19 31-49 2-20 (163)
159 COG0293 FtsJ 23S rRNA methylas 24.9 49 0.0011 26.9 1.8 26 25-50 42-67 (205)
160 TIGR02987 met_A_Alw26 type II 24.6 75 0.0016 28.3 3.0 23 28-50 31-53 (524)
161 PF01739 CheR: CheR methyltran 24.5 66 0.0014 25.4 2.4 37 27-63 30-73 (196)
162 PTZ00338 dimethyladenosine tra 24.0 45 0.00097 28.0 1.4 21 29-49 37-57 (294)
163 TIGR00417 speE spermidine synt 23.4 60 0.0013 26.3 2.0 22 27-48 71-92 (270)
164 PF06080 DUF938: Protein of un 23.1 2.6E+02 0.0057 22.7 5.6 87 31-119 28-117 (204)
165 PRK14903 16S rRNA methyltransf 22.9 51 0.0011 29.0 1.6 33 29-62 238-270 (431)
166 COG0357 GidB Predicted S-adeno 22.7 1E+02 0.0022 25.1 3.2 31 29-61 68-98 (215)
167 PRK00811 spermidine synthase; 22.1 60 0.0013 26.7 1.8 24 26-49 74-97 (283)
168 COG2227 UbiG 2-polyprenyl-3-me 21.3 60 0.0013 27.3 1.7 20 28-47 59-78 (243)
169 PF06441 EHN: Epoxide hydrolas 21.1 51 0.0011 24.0 1.1 14 84-97 94-107 (112)
170 PF01596 Methyltransf_3: O-met 20.9 64 0.0014 25.7 1.7 24 27-50 44-67 (205)
171 PRK11727 23S rRNA mA1618 methy 20.8 68 0.0015 27.5 1.9 20 28-47 114-133 (321)
172 PLN02672 methionine S-methyltr 20.7 49 0.0011 33.2 1.1 34 30-65 120-153 (1082)
173 PF08436 DXP_redisom_C: 1-deox 20.5 87 0.0019 22.4 2.1 31 67-98 8-38 (84)
174 PF03291 Pox_MCEL: mRNA cappin 20.4 65 0.0014 27.6 1.7 21 99-119 138-160 (331)
No 1
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=3.5e-46 Score=313.75 Aligned_cols=102 Identities=43% Similarity=0.787 Sum_probs=84.6
Q ss_pred CCCcceEEEeecCCCCcccHHHHHHhhc--------------CceeEEecCCCCCchHHHhhcchhhhhhcc-CCCEEEE
Q 045170 25 ISNEILNVTYFGCSSNPSTFSVVSSVIE--------------NEFPFYLNDLLGNDFNMLFQGLSSFAERYK-DLSLFTV 89 (135)
Q Consensus 25 ~~~~~~~IaDlGCS~G~NSl~~i~~iI~--------------peiqv~~nDLP~NDFntLF~~l~~~~~~~~-~~~~f~~ 89 (135)
..+++++|||||||+|+||+.+++.||+ |||||||||||+||||+||++|+.+.++++ .++||++
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 5789999999999999999999999998 579999999999999999999999987765 4899999
Q ss_pred ecCCcccccccCCCceeeEecchhhhccccCCccccc
Q 045170 90 GAPGSFHGWLFPTNSLHLVHSSYGAHWLSKMRLPILK 126 (135)
Q Consensus 90 ~vpgSFY~rLfP~~Svh~~~Ss~alHWLS~~P~~l~d 126 (135)
|||||||+||||++||||+||++|||||||+|+++.|
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~ 129 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVD 129 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCT
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCccccc
Confidence 9999999999999999999999999999999999999
No 2
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=3.2e-43 Score=302.75 Aligned_cols=123 Identities=33% Similarity=0.544 Sum_probs=107.6
Q ss_pred HhhhhhhhccccccccC--C----CC-cceEEEeecCCCCcccHHHHHHhhc-------------CceeEEecCCCCCch
Q 045170 8 SQYWRVQFNLDLLGEEG--I----SN-EILNVTYFGCSSNPSTFSVVSSVIE-------------NEFPFYLNDLLGNDF 67 (135)
Q Consensus 8 ~q~~~~~~~l~ll~~~~--~----~~-~~~~IaDlGCS~G~NSl~~i~~iI~-------------peiqv~~nDLP~NDF 67 (135)
-|+.+....+++|+++. . .| ++++|||||||+|+||+.++++||+ ||+||||||||+|||
T Consensus 36 ~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDF 115 (386)
T PLN02668 36 AQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDF 115 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCH
Confidence 57788888888988852 1 24 6999999999999999999999997 689999999999999
Q ss_pred HHHhhcchhhhhhc----------cCCCEEEEecCCcccccccCCCceeeEecchhhhccccCCcccccccee
Q 045170 68 NMLFQGLSSFAERY----------KDLSLFTVGAPGSFHGWLFPTNSLHLVHSSYGAHWLSKMRLPILKYMLI 130 (135)
Q Consensus 68 ntLF~~l~~~~~~~----------~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS~~P~~l~d~~~~ 130 (135)
|+||++|+.+.+.. ..++||++|||||||+||||++||||+||+||||||||+|+++.|+.++
T Consensus 116 NtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~ 188 (386)
T PLN02668 116 NTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSA 188 (386)
T ss_pred HHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcc
Confidence 99999999876531 1146999999999999999999999999999999999999999876543
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.37 E-value=0.00042 Score=52.84 Aligned_cols=98 Identities=18% Similarity=0.127 Sum_probs=61.7
Q ss_pred hhhhhhhccccccccCCCCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEE
Q 045170 9 QYWRVQFNLDLLGEEGISNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFT 88 (135)
Q Consensus 9 q~~~~~~~l~ll~~~~~~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~ 88 (135)
|+...+.-++.+... ...++.+|.|+||.+|..+..+.... |..++..-|.....-+..-+.+. +++-.
T Consensus 16 q~~~~~~l~~~~~~~-~~~~~~~vLDlG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~ 84 (240)
T TIGR02072 16 QREMAKRLLALLKEK-GIFIPASVLDIGCGTGYLTRALLKRF--PQAEFIALDISAGMLAQAKTKLS--------ENVQF 84 (240)
T ss_pred HHHHHHHHHHHhhhh-ccCCCCeEEEECCCccHHHHHHHHhC--CCCcEEEEeChHHHHHHHHHhcC--------CCCeE
Confidence 444444444555431 12345789999999999887665543 56678888875444333333222 12111
Q ss_pred EecCCcccccccCCCceeeEecchhhhcccc
Q 045170 89 VGAPGSFHGWLFPTNSLHLVHSSYGAHWLSK 119 (135)
Q Consensus 89 ~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS~ 119 (135)
+-++.-+..+|+++.|++++..++||+..
T Consensus 85 --~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 85 --ICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred --EecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 22455566678999999999999999954
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.86 E-value=0.0023 Score=41.73 Aligned_cols=73 Identities=21% Similarity=0.208 Sum_probs=45.9
Q ss_pred EeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeEecch
Q 045170 33 TYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLVHSSY 112 (135)
Q Consensus 33 aDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~ 112 (135)
.|+||..|.++..+.+. +...++-.|.... .+....+......+- -+-+++.+--||++|+|++++..
T Consensus 1 LdiG~G~G~~~~~l~~~---~~~~v~~~D~~~~-------~~~~~~~~~~~~~~~--~~~~d~~~l~~~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GGASVTGIDISEE-------MLEQARKRLKNEGVS--FRQGDAEDLPFPDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TTCEEEEEES-HH-------HHHHHHHHTTTSTEE--EEESBTTSSSS-TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc---cCCEEEEEeCCHH-------HHHHHHhcccccCch--heeehHHhCcccccccccccccc
Confidence 49999999999988887 4566666664222 111122222222222 23366777789999999999999
Q ss_pred hhhcc
Q 045170 113 GAHWL 117 (135)
Q Consensus 113 alHWL 117 (135)
++||+
T Consensus 69 ~~~~~ 73 (95)
T PF08241_consen 69 VLHHL 73 (95)
T ss_dssp HGGGS
T ss_pred ceeec
Confidence 99999
No 5
>PRK06202 hypothetical protein; Provisional
Probab=96.83 E-value=0.005 Score=48.39 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=50.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhc--CceeEEecCCCCCchHHHhhcchhhhhhccCCCE-EEEecCCcccccccCCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIE--NEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSL-FTVGAPGSFHGWLFPTN 103 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~--peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-f~~~vpgSFY~rLfP~~ 103 (135)
.+..+|+|+||.+|..+..+....-+ +..+|.--|+.. +.-...+. .....++ +..+....+ -++++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~-~~l~~a~~------~~~~~~~~~~~~~~~~l---~~~~~ 128 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP-RAVAFARA------NPRRPGVTFRQAVSDEL---VAEGE 128 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH-HHHHHHHh------ccccCCCeEEEEecccc---cccCC
Confidence 45679999999999988876554332 567888888633 11111111 1111111 222222221 12678
Q ss_pred ceeeEecchhhhcccc
Q 045170 104 SLHLVHSSYGAHWLSK 119 (135)
Q Consensus 104 Svh~~~Ss~alHWLS~ 119 (135)
+.|+++++.++||+..
T Consensus 129 ~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 129 RFDVVTSNHFLHHLDD 144 (232)
T ss_pred CccEEEECCeeecCCh
Confidence 9999999999999965
No 6
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.61 E-value=0.0038 Score=49.48 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=49.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCE-EEEecCCcccccccCCCce
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSL-FTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-f~~~vpgSFY~rLfP~~Sv 105 (135)
.+.-+|.|+||..|..+..+.... |.-+|+-.|+... .- +... +.. +++ |.. +..- .+.|+++.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~--~~~~v~gvD~s~~-~i---~~a~---~~~--~~~~~~~---~d~~-~~~~~~~f 94 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW--PAARITGIDSSPA-ML---AEAR---SRL--PDCQFVE---ADIA-SWQPPQAL 94 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC--CCCEEEEEECCHH-HH---HHHH---HhC--CCCeEEE---Cchh-ccCCCCCc
Confidence 446799999999999987766543 5567888886432 11 1111 111 121 222 3332 34577899
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|+++|..++||+..
T Consensus 95 D~v~~~~~l~~~~d 108 (258)
T PRK01683 95 DLIFANASLQWLPD 108 (258)
T ss_pred cEEEEccChhhCCC
Confidence 99999999999864
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.33 E-value=0.0068 Score=47.08 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=51.3
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
..-+|.|+||.+|..+..+. +.+.|..+|+--|+..+ .-...+.- . ....-+++ .-+.+...+--+|+++.|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la-~~~~~~~~v~gvD~s~~-~~~~a~~~--~-~~~~~~~v--~~~~~d~~~~~~~~~~fD~ 117 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALA-EAVGPEGHVIGLDFSEN-MLSVGRQK--V-KDAGLHNV--ELVHGNAMELPFDDNSFDY 117 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHH-HHhCCCCEEEEEECCHH-HHHHHHHH--H-HhcCCCce--EEEEechhcCCCCCCCccE
Confidence 35689999999999877444 34445567888886432 11111111 1 11111222 1223444443468899999
Q ss_pred EecchhhhccccC
Q 045170 108 VHSSYGAHWLSKM 120 (135)
Q Consensus 108 ~~Ss~alHWLS~~ 120 (135)
+++..++||++..
T Consensus 118 V~~~~~l~~~~~~ 130 (231)
T TIGR02752 118 VTIGFGLRNVPDY 130 (231)
T ss_pred EEEecccccCCCH
Confidence 9999999997643
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.08 E-value=0.017 Score=45.67 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
+.-+|.|+||.+|..+..+.. ...+|+-.|+... .+....+... ..-|+. +..-.--+|+++.|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~~~D~s~~-------~l~~a~~~~~-~~~~~~---~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRE----RGSQVTALDLSPP-------MLAQARQKDA-ADHYLA---GDIESLPLATATFDL 106 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHH----cCCeEEEEECCHH-------HHHHHHhhCC-CCCEEE---cCcccCcCCCCcEEE
Confidence 356799999999987765532 2356777776321 1110011111 112332 333333468889999
Q ss_pred EecchhhhccccC
Q 045170 108 VHSSYGAHWLSKM 120 (135)
Q Consensus 108 ~~Ss~alHWLS~~ 120 (135)
++|..++||....
T Consensus 107 V~s~~~l~~~~d~ 119 (251)
T PRK10258 107 AWSNLAVQWCGNL 119 (251)
T ss_pred EEECchhhhcCCH
Confidence 9999999997653
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.87 E-value=0.016 Score=46.27 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=49.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCcee
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLH 106 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh 106 (135)
...-+|.|+||.+|..+..+.... |..+|+--|+.. +.-...+. ..-. +.. +.. ..+.|+++.|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~--p~~~v~gvD~s~-~~~~~a~~--------~~~~-~~~---~d~-~~~~~~~~fD 91 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW--PGAVIEALDSSP-EMVAAARE--------RGVD-ART---GDV-RDWKPKPDTD 91 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC--CCCEEEEEECCH-HHHHHHHh--------cCCc-EEE---cCh-hhCCCCCCce
Confidence 456799999999998887655442 556778778632 11111111 1111 222 343 3556788999
Q ss_pred eEecchhhhcccc
Q 045170 107 LVHSSYGAHWLSK 119 (135)
Q Consensus 107 ~~~Ss~alHWLS~ 119 (135)
+++|..++||+..
T Consensus 92 ~v~~~~~l~~~~d 104 (255)
T PRK14103 92 VVVSNAALQWVPE 104 (255)
T ss_pred EEEEehhhhhCCC
Confidence 9999999999864
No 10
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.81 E-value=0.018 Score=44.10 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=54.0
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
..+|+|+||..|..+..+.... .+..+++.-|+..+-....=+.+.. .....++-+ +-+++.+..++.++.|++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~-~~~~~v~~~D~s~~~~~~a~~~~~~---~~~~~~~~~--~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV-GKTGEVVGLDFSEGMLAVGREKLRD---LGLSGNVEF--VQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHhhcc---cccccCeEE--EecccccCCCCCCCccEE
Confidence 4789999999999888776544 2257888888744321111111110 000122222 225565555778899999
Q ss_pred ecchhhhccccCC
Q 045170 109 HSSYGAHWLSKMR 121 (135)
Q Consensus 109 ~Ss~alHWLS~~P 121 (135)
++++.+|++...+
T Consensus 126 ~~~~~l~~~~~~~ 138 (239)
T PRK00216 126 TIAFGLRNVPDID 138 (239)
T ss_pred EEecccccCCCHH
Confidence 9999999987644
No 11
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.63 E-value=0.0079 Score=47.44 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=47.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCcee
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLH 106 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh 106 (135)
++.-+|.|+||++|.++..+.... +..+++--|+..+=- ...+ +...+..+. .++..+ -+++++.|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~--~~~~v~giDiS~~~l-~~A~------~~~~~~~~~----~~d~~~-~~~~~sfD 107 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLL--PFKHIYGVEINEYAV-EKAK------AYLPNINII----QGSLFD-PFKDNFFD 107 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhC--CCCeEEEEECCHHHH-HHHH------hhCCCCcEE----EeeccC-CCCCCCEE
Confidence 456689999999999888775432 334555555432211 1111 111112222 244444 67899999
Q ss_pred eEecchhhhccc
Q 045170 107 LVHSSYGAHWLS 118 (135)
Q Consensus 107 ~~~Ss~alHWLS 118 (135)
++++...||+++
T Consensus 108 ~V~~~~vL~hl~ 119 (204)
T TIGR03587 108 LVLTKGVLIHIN 119 (204)
T ss_pred EEEECChhhhCC
Confidence 999999998875
No 12
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.43 E-value=0.025 Score=44.60 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=51.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhcc-CCCEEEEecCCcccccccCCCce
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYK-DLSLFTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~-~~~~f~~~vpgSFY~rLfP~~Sv 105 (135)
+..-+|.|+||.+|..+..+.+.+-.|..+++--|+.. +.-...+.. . .... ..++ ..+-+++.+--++ ..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~-~ml~~a~~~--~-~~~~~~~~v--~~~~~d~~~~~~~--~~ 123 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ-PMVERCRQH--I-AAYHSEIPV--EILCNDIRHVEIK--NA 123 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH-HHHHHHHHH--H-HhcCCCCCe--EEEECChhhCCCC--CC
Confidence 34568999999999988887776656788888888633 221111111 1 1111 1222 2234566543333 46
Q ss_pred eeEecchhhhccc
Q 045170 106 HLVHSSYGAHWLS 118 (135)
Q Consensus 106 h~~~Ss~alHWLS 118 (135)
|++++.+++||++
T Consensus 124 d~v~~~~~l~~~~ 136 (239)
T TIGR00740 124 SMVILNFTLQFLP 136 (239)
T ss_pred CEEeeecchhhCC
Confidence 8999999999985
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.31 E-value=0.1 Score=38.15 Aligned_cols=85 Identities=8% Similarity=0.045 Sum_probs=49.5
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccc--cccCCCce
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHG--WLFPTNSL 105 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~--rLfP~~Sv 105 (135)
+..+|.|+||.+|..++.+.. .+.|..+++.-|+-..= .+......+...-+++-+.. ++..+ +.++ +..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~-~~~~~~~i~gvD~s~~~----i~~a~~~~~~~~~~ni~~~~--~d~~~l~~~~~-~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK-ELNPGAKIIGVDISEEM----IEYAKKRAKELGLDNIEFIQ--GDIEDLPQELE-EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH-HSTTTSEEEEEESSHHH----HHHHHHHHHHTTSTTEEEEE--SBTTCGCGCSS-TTE
T ss_pred CCCEEEEecCcCcHHHHHHHH-hcCCCCEEEEEECcHHH----HHHhhcccccccccccceEE--eehhccccccC-CCe
Confidence 568999999999999988775 33356778877763211 11111111111112322221 44444 2244 899
Q ss_pred eeEecchhhhccccC
Q 045170 106 HLVHSSYGAHWLSKM 120 (135)
Q Consensus 106 h~~~Ss~alHWLS~~ 120 (135)
|++++..++||+...
T Consensus 75 D~I~~~~~l~~~~~~ 89 (152)
T PF13847_consen 75 DIIISNGVLHHFPDP 89 (152)
T ss_dssp EEEEEESTGGGTSHH
T ss_pred eEEEEcCchhhccCH
Confidence 999999999998754
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.12 E-value=0.0082 Score=43.00 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=45.8
Q ss_pred CCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCccc--ccccCCC
Q 045170 26 SNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFH--GWLFPTN 103 (135)
Q Consensus 26 ~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY--~rLfP~~ 103 (135)
.++..+|.|+||..|.++..+... ..++...|.-...-.. . ... +..|. ...+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~g~D~~~~~~~~------------~-~~~-----~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR----GFEVTGVDISPQMIEK------------R-NVV-----FDNFDAQDPPFPDG 77 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT----TSEEEEEESSHHHHHH------------T-TSE-----EEEEECHTHHCHSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh----CCEEEEEECCHHHHhh------------h-hhh-----hhhhhhhhhhcccc
Confidence 466789999999999876665332 1366666642211111 0 001 11121 4456889
Q ss_pred ceeeEecchhhhcccc
Q 045170 104 SLHLVHSSYGAHWLSK 119 (135)
Q Consensus 104 Svh~~~Ss~alHWLS~ 119 (135)
+.|+++++.+|||+..
T Consensus 78 ~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 78 SFDLIICNDVLEHLPD 93 (161)
T ss_dssp SEEEEEEESSGGGSSH
T ss_pred chhhHhhHHHHhhccc
Confidence 9999999999999985
No 15
>PRK05785 hypothetical protein; Provisional
Probab=94.90 E-value=0.042 Score=43.80 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
.-+|.|+||.+|..+..+.... ..+|+--|+. -+.=.+.+ + +.. ++. +++-.-=||++|.|.+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~---~~~v~gvD~S-~~Ml~~a~------~---~~~-~~~---~d~~~lp~~d~sfD~v 114 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF---KYYVVALDYA-ENMLKMNL------V---ADD-KVV---GSFEALPFRDKSFDVV 114 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc---CCEEEEECCC-HHHHHHHH------h---ccc-eEE---echhhCCCCCCCEEEE
Confidence 5689999999999888766553 2466666642 11111111 0 111 222 3444444789999999
Q ss_pred ecchhhhccccCCc
Q 045170 109 HSSYGAHWLSKMRL 122 (135)
Q Consensus 109 ~Ss~alHWLS~~P~ 122 (135)
++++++||+...+.
T Consensus 115 ~~~~~l~~~~d~~~ 128 (226)
T PRK05785 115 MSSFALHASDNIEK 128 (226)
T ss_pred EecChhhccCCHHH
Confidence 99999999876443
No 16
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=94.84 E-value=0.031 Score=37.85 Aligned_cols=79 Identities=14% Similarity=0.042 Sum_probs=36.7
Q ss_pred EeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeEecch
Q 045170 33 TYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLVHSSY 112 (135)
Q Consensus 33 aDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~ 112 (135)
.|+||.+|..+..++... |..++...|....=-...=+.+... .....-.+............ .++.|+++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~--~~~~~~~~D~s~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL--PDARYTGVDISPSMLERARERLAEL---GNDNFERLRFDVLDLFDYDP-PESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHC---T---EEEEE--SSS---CCC-----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHhhhc---CCcceeEEEeecCChhhccc-ccccceehhhh
Confidence 499999999999888877 6788888886443221111111110 00111122332333322222 28999999999
Q ss_pred hhhcc
Q 045170 113 GAHWL 117 (135)
Q Consensus 113 alHWL 117 (135)
.+||+
T Consensus 75 vl~~l 79 (99)
T PF08242_consen 75 VLHHL 79 (99)
T ss_dssp TTS--
T ss_pred hHhhh
Confidence 99999
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=94.77 E-value=0.072 Score=42.64 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=50.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhcc-CCCEEEEecCCcccccccCCCce
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYK-DLSLFTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~-~~~~f~~~vpgSFY~rLfP~~Sv 105 (135)
+..-+|.|+||++|.+++.+...+-.|..+++.-|. +-+.-...+..-. ... ..++-+ +.+++.+- |....
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~-S~~ml~~A~~~~~---~~~~~~~v~~--~~~d~~~~--~~~~~ 126 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN-SPAMIERCRRHID---AYKAPTPVDV--IEGDIRDI--AIENA 126 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeC-CHHHHHHHHHHHH---hcCCCCCeEE--EeCChhhC--CCCCC
Confidence 345689999999999988865555457788888884 2222222222111 111 112222 23555432 33447
Q ss_pred eeEecchhhhccc
Q 045170 106 HLVHSSYGAHWLS 118 (135)
Q Consensus 106 h~~~Ss~alHWLS 118 (135)
|++++..++|+++
T Consensus 127 D~vv~~~~l~~l~ 139 (247)
T PRK15451 127 SMVVLNFTLQFLE 139 (247)
T ss_pred CEEehhhHHHhCC
Confidence 8999999999996
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=94.73 E-value=0.1 Score=39.48 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=51.2
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
+..+|.|+||+.|..+..+.... ....+++.-|.... . .+....... ...++-+. -+.+.+..+++++.|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~~~~iD~~~~-~---~~~~~~~~~--~~~~i~~~--~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-PDRGKVTGVDFSSE-M---LEVAKKKSE--LPLNIEFI--QADAEALPFEDNSFDA 109 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-CCCceEEEEECCHH-H---HHHHHHHhc--cCCCceEE--ecchhcCCCCCCcEEE
Confidence 56799999999999888766554 22267777776321 1 111111100 11222222 2555555578889999
Q ss_pred Eecchhhhcccc
Q 045170 108 VHSSYGAHWLSK 119 (135)
Q Consensus 108 ~~Ss~alHWLS~ 119 (135)
++++..+|+...
T Consensus 110 i~~~~~~~~~~~ 121 (223)
T TIGR01934 110 VTIAFGLRNVTD 121 (223)
T ss_pred EEEeeeeCCccc
Confidence 999999998765
No 19
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.66 E-value=0.021 Score=48.54 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=49.8
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEE--ecCCcccccccCCCceee
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTV--GAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~--~vpgSFY~rLfP~~Svh~ 107 (135)
-+.+|+|||-|+-+-.++.+-|+. ++.-|... ...++-. .-+++.+-+. ..---|.. |-++|+|+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vek---li~~DtS~----~M~~s~~----~~qdp~i~~~~~v~DEE~Ld--f~ens~DL 140 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEK---LIMMDTSY----DMIKSCR----DAQDPSIETSYFVGDEEFLD--FKENSVDL 140 (325)
T ss_pred cceeecccchhhhhHHHHhcchhh---eeeeecch----HHHHHhh----ccCCCceEEEEEecchhccc--ccccchhh
Confidence 468999999999887777665542 22333211 0111111 1112333222 12234555 88999999
Q ss_pred EecchhhhccccCCccc
Q 045170 108 VHSSYGAHWLSKMRLPI 124 (135)
Q Consensus 108 ~~Ss~alHWLS~~P~~l 124 (135)
+.|+-++||...+|...
T Consensus 141 iisSlslHW~NdLPg~m 157 (325)
T KOG2940|consen 141 IISSLSLHWTNDLPGSM 157 (325)
T ss_pred hhhhhhhhhhccCchHH
Confidence 99999999999999643
No 20
>PRK08317 hypothetical protein; Provisional
Probab=94.34 E-value=0.22 Score=37.64 Aligned_cols=84 Identities=18% Similarity=0.119 Sum_probs=50.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCE-EEEecCCcccccccCCCce
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSL-FTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-f~~~vpgSFY~rLfP~~Sv 105 (135)
....+|.|+||..|..+..+.... .|.-+++--|+..+-....-+... ...+++ |.. +.+...-+++++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~-~~~~~v~~~d~~~~~~~~a~~~~~-----~~~~~~~~~~---~d~~~~~~~~~~~ 88 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRV-GPEGRVVGIDRSEAMLALAKERAA-----GLGPNVEFVR---GDADGLPFPDGSF 88 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHhh-----CCCCceEEEe---cccccCCCCCCCc
Confidence 345689999999998877665433 355677777764322221111100 001122 222 3344444678899
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|++++..++|++..
T Consensus 89 D~v~~~~~~~~~~~ 102 (241)
T PRK08317 89 DAVRSDRVLQHLED 102 (241)
T ss_pred eEEEEechhhccCC
Confidence 99999999999866
No 21
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=94.17 E-value=0.077 Score=41.91 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=53.2
Q ss_pred hhhhhcccccccc---CCCCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEE
Q 045170 11 WRVQFNLDLLGEE---GISNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLF 87 (135)
Q Consensus 11 ~~~~~~l~ll~~~---~~~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f 87 (135)
++...+.+++... .+..+.-+|+|+||++|.-+..+.... .+.-+|+--|+-. . ..+ +++.
T Consensus 31 ~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~-~~~~~V~aVDi~~--~----~~~---------~~v~ 94 (209)
T PRK11188 31 LRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQI-GDKGRVIACDILP--M----DPI---------VGVD 94 (209)
T ss_pred CchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHc-CCCceEEEEeccc--c----cCC---------CCcE
Confidence 3444455555332 223445689999999999877666543 3334566666532 1 111 1222
Q ss_pred EEecCCccccc--------ccCCCceeeEecchhhhccc
Q 045170 88 TVGAPGSFHGW--------LFPTNSLHLVHSSYGAHWLS 118 (135)
Q Consensus 88 ~~~vpgSFY~r--------LfP~~Svh~~~Ss~alHWLS 118 (135)
.+-|++.+. -++++++|+++|..+.||..
T Consensus 95 --~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g 131 (209)
T PRK11188 95 --FLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSG 131 (209)
T ss_pred --EEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCC
Confidence 222455542 25788999999999999954
No 22
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.02 E-value=0.12 Score=42.13 Aligned_cols=81 Identities=16% Similarity=0.036 Sum_probs=49.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCcee
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLH 106 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh 106 (135)
+...+|.|+||..|..+..+... ...+|+--|+..+--. ..+.... ...++ ..+.+++.+.-+|+++.|
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~---~~~~v~giD~s~~~~~-~a~~~~~-----~~~~i--~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEK---YGAHVHGVDICEKMVN-IAKLRNS-----DKNKI--EFEANDILKKDFPENTFD 119 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhh---cCCEEEEEECCHHHHH-HHHHHcC-----cCCce--EEEECCcccCCCCCCCeE
Confidence 44679999999999988766532 2357777776432111 1111100 01222 223356666668899999
Q ss_pred eEecchhhhccc
Q 045170 107 LVHSSYGAHWLS 118 (135)
Q Consensus 107 ~~~Ss~alHWLS 118 (135)
++++..++++++
T Consensus 120 ~V~s~~~l~h~~ 131 (263)
T PTZ00098 120 MIYSRDAILHLS 131 (263)
T ss_pred EEEEhhhHHhCC
Confidence 999998877664
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=93.99 E-value=0.096 Score=45.08 Aligned_cols=81 Identities=15% Similarity=0.056 Sum_probs=51.1
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
...+|.|+||.+|..++.+.+.. +..++..-|+..+--. ..+.. ....++- .+.++..+.-+++++.|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~--~~~~VtgVD~S~~mL~-~A~~k------~~~~~i~--~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV--DAKNVTILDQSPHQLA-KAKQK------EPLKECK--IIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC--CCCEEEEEECCHHHHH-HHHHh------hhccCCe--EEeccHHhCCCCCCceeE
Confidence 45799999999999888776543 3467888886433211 11111 0011221 134555554578899999
Q ss_pred Eecchhhhcccc
Q 045170 108 VHSSYGAHWLSK 119 (135)
Q Consensus 108 ~~Ss~alHWLS~ 119 (135)
+++..++|++..
T Consensus 182 VIs~~~L~~~~d 193 (340)
T PLN02490 182 YVSAGSIEYWPD 193 (340)
T ss_pred EEEcChhhhCCC
Confidence 999999998654
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=93.97 E-value=0.024 Score=38.75 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=43.4
Q ss_pred EEeecCCCCcccHHHHHHhhc--CceeEEecCCCCCchHHHhhcchhhhhhccC-CCEEEEecCCcccccccCCCceeeE
Q 045170 32 VTYFGCSSNPSTFSVVSSVIE--NEFPFYLNDLLGNDFNMLFQGLSSFAERYKD-LSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 32 IaDlGCS~G~NSl~~i~~iI~--peiqv~~nDLP~NDFntLF~~l~~~~~~~~~-~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
|.|+||.+|.++..+.... + |+.++..-|+..+=....=+.... .+ +--|+.+ .+-+=-++.++.|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~-----~~~~~~~~~~---D~~~l~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSE-----DGPKVRFVQA---DARDLPFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHH-----TTTTSEEEES---CTTCHHHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchh-----cCCceEEEEC---CHhHCcccCCCeeEE
Confidence 7899999999999998887 5 457888888643221111111110 11 1123333 222212467799999
Q ss_pred ecchh-hhcccc
Q 045170 109 HSSYG-AHWLSK 119 (135)
Q Consensus 109 ~Ss~a-lHWLS~ 119 (135)
+++.. +|.+++
T Consensus 72 ~~~~~~~~~~~~ 83 (101)
T PF13649_consen 72 VCSGLSLHHLSP 83 (101)
T ss_dssp EE-TTGGGGSSH
T ss_pred EEcCCccCCCCH
Confidence 99766 888763
No 25
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=93.89 E-value=0.061 Score=44.33 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=59.5
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccC-CCEEEEecCCcccccccCCCcee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKD-LSLFTVGAPGSFHGWLFPTNSLH 106 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~-~~~f~~~vpgSFY~rLfP~~Svh 106 (135)
+..+|.|+||.+|--++.+...+= +-+|..-|...+= |..-.++..+ ...-+.=|=|..-+=-||++|.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g--~g~v~~~D~s~~M-------L~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG--TGEVVGLDISESM-------LEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC--CceEEEEECCHHH-------HHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 689999999999999988776554 5667766643321 1112222222 11102223356666669999999
Q ss_pred eEecchhhhccccCCcccc
Q 045170 107 LVHSSYGAHWLSKMRLPIL 125 (135)
Q Consensus 107 ~~~Ss~alHWLS~~P~~l~ 125 (135)
.+..+++|+++.+.++.|.
T Consensus 122 ~vt~~fglrnv~d~~~aL~ 140 (238)
T COG2226 122 AVTISFGLRNVTDIDKALK 140 (238)
T ss_pred EEEeeehhhcCCCHHHHHH
Confidence 9999999999998876653
No 26
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.58 E-value=0.091 Score=43.04 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=43.4
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeEe
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLVH 109 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~ 109 (135)
-+|.|+||.+|.|++.+... ..+|+--|....=-.. +...... .+.++ ..+.+..-.. -.+++.|+++
T Consensus 122 ~~vLDlGcG~G~~~~~la~~----g~~V~avD~s~~ai~~----~~~~~~~-~~l~v--~~~~~D~~~~-~~~~~fD~I~ 189 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL----GFDVTAVDINQQSLEN----LQEIAEK-ENLNI--RTGLYDINSA-SIQEEYDFIL 189 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC----CCEEEEEECCHHHHHH----HHHHHHH-cCCce--EEEEechhcc-cccCCccEEE
Confidence 38999999999999887663 2566666653221111 1111000 01122 1112222221 1267899999
Q ss_pred cchhhhccc
Q 045170 110 SSYGAHWLS 118 (135)
Q Consensus 110 Ss~alHWLS 118 (135)
+...+|++.
T Consensus 190 ~~~vl~~l~ 198 (287)
T PRK12335 190 STVVLMFLN 198 (287)
T ss_pred EcchhhhCC
Confidence 999999986
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.52 E-value=0.16 Score=44.02 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=51.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCcee
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLH 106 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh 106 (135)
.+.-+|.|+||.+|..++.+.+.. ..+|+--|+.. +.-...+ ... ... ..++- -.-+.+....+|+++.|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~---~~~v~gvDiS~-~~l~~A~--~~~-~~~-~~~v~--~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF---DVHVVGIDLSV-NMISFAL--ERA-IGR-KCSVE--FEVADCTKKTYPDNSFD 334 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc---CCEEEEEECCH-HHHHHHH--HHh-hcC-CCceE--EEEcCcccCCCCCCCEE
Confidence 345689999999999877655432 45777777642 1111111 110 001 12222 22356677678999999
Q ss_pred eEecchhhhcccc
Q 045170 107 LVHSSYGAHWLSK 119 (135)
Q Consensus 107 ~~~Ss~alHWLS~ 119 (135)
+++|..+++|+..
T Consensus 335 ~I~s~~~l~h~~d 347 (475)
T PLN02336 335 VIYSRDTILHIQD 347 (475)
T ss_pred EEEECCcccccCC
Confidence 9999999999864
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=93.47 E-value=0.1 Score=40.42 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=44.5
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
.-+|.|+||..|.+++.+.+. -.+|.--|+..+ .-...+..- ....-.++ ..+-+.+-.--+ +++.|++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~----g~~V~gvD~S~~-~i~~a~~~~---~~~~~~~v--~~~~~d~~~~~~-~~~fD~I 99 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN----GFDVTAWDKNPM-SIANLERIK---AAENLDNL--HTAVVDLNNLTF-DGEYDFI 99 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC----CCEEEEEeCCHH-HHHHHHHHH---HHcCCCcc--eEEecChhhCCc-CCCcCEE
Confidence 468999999999999887754 245555565321 111111111 11000111 122233322223 4679999
Q ss_pred ecchhhhccc
Q 045170 109 HSSYGAHWLS 118 (135)
Q Consensus 109 ~Ss~alHWLS 118 (135)
++..++||+.
T Consensus 100 ~~~~~~~~~~ 109 (197)
T PRK11207 100 LSTVVLMFLE 109 (197)
T ss_pred EEecchhhCC
Confidence 9999999986
No 29
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=93.42 E-value=0.2 Score=39.11 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=50.6
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcc---cccccCCCc
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSF---HGWLFPTNS 104 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSF---Y~rLfP~~S 104 (135)
+.-+|.|+||.+|..++.+.... |..+|+-.|.-..=-..+-+.+.. ..-+++.+. -++. +.+.+++++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~--p~~~v~gVD~s~~~i~~a~~~~~~----~~~~~v~~~--~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN--PDINFIGIEVHEPGVGKALKKIEE----EGLTNLRLL--CGDAVEVLLDMFPDGS 111 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC--CCccEEEEEechHHHHHHHHHHHH----cCCCCEEEE--ecCHHHHHHHHcCccc
Confidence 56789999999999998876542 556777777533222222211111 111344332 2333 345588899
Q ss_pred eeeEecchhhhccc
Q 045170 105 LHLVHSSYGAHWLS 118 (135)
Q Consensus 105 vh~~~Ss~alHWLS 118 (135)
+|.+++.+..+|..
T Consensus 112 ~D~V~~~~~~p~~~ 125 (202)
T PRK00121 112 LDRIYLNFPDPWPK 125 (202)
T ss_pred cceEEEECCCCCCC
Confidence 99999988887754
No 30
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.37 E-value=0.31 Score=39.56 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=48.4
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCE-EEEecCCcccccccCCCce
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSL-FTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-f~~~vpgSFY~rLfP~~Sv 105 (135)
+..-+|.|+||.+|..+..+. +.+.+.-+|+--|+..+ .-...+.-.........+++ ++. +..-+--+|++|.
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la-~~~~~~~~V~gvD~S~~-ml~~A~~r~~~~~~~~~~~i~~~~---~d~~~lp~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLS-EKVGSDGKVMGLDFSSE-QLAVAASRQELKAKSCYKNIEWIE---GDATDLPFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHH-HHhCCCCEEEEEECCHH-HHHHHHHHhhhhhhccCCCeEEEE---cccccCCCCCCCE
Confidence 346789999999999776543 33444456666664322 11111100000000001233 232 2332223789999
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|++++++++||+..
T Consensus 147 D~V~~~~~l~~~~d 160 (261)
T PLN02233 147 DAITMGYGLRNVVD 160 (261)
T ss_pred eEEEEecccccCCC
Confidence 99999999999864
No 31
>PRK06922 hypothetical protein; Provisional
Probab=93.27 E-value=0.18 Score=47.34 Aligned_cols=83 Identities=16% Similarity=0.064 Sum_probs=48.9
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCE-EEEecCCccc--ccccCCCce
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSL-FTVGAPGSFH--GWLFPTNSL 105 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-f~~~vpgSFY--~rLfP~~Sv 105 (135)
.-+|.|+||++|..+..+.... |..+++--|+..+ .| +....... ....++ ++. ++.- ...|+++++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~--P~~kVtGIDIS~~---ML-e~Ararl~-~~g~~ie~I~---gDa~dLp~~fedeSF 488 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET--EDKRIYGIDISEN---VI-DTLKKKKQ-NEGRSWNVIK---GDAINLSSSFEKESV 488 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC--CCCEEEEEECCHH---HH-HHHHHHhh-hcCCCeEEEE---cchHhCccccCCCCE
Confidence 5699999999998766544432 6678888887542 11 11111000 011222 222 2322 234789999
Q ss_pred eeEecchhhhcc-ccCC
Q 045170 106 HLVHSSYGAHWL-SKMR 121 (135)
Q Consensus 106 h~~~Ss~alHWL-S~~P 121 (135)
|+++++..+||+ +.+|
T Consensus 489 DvVVsn~vLH~L~syIp 505 (677)
T PRK06922 489 DTIVYSSILHELFSYIE 505 (677)
T ss_pred EEEEEchHHHhhhhhcc
Confidence 999999999975 4444
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=93.26 E-value=0.077 Score=41.11 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
+-+|.|+||.+|.+++.+... ..+|+--|+.. +.-...+.. .... +-++-.. -+..- ..-++++.|++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~----g~~V~~iD~s~-~~l~~a~~~---~~~~-~~~v~~~--~~d~~-~~~~~~~fD~I 98 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA----GYDVRAWDHNP-ASIASVLDM---KARE-NLPLRTD--AYDIN-AAALNEDYDFI 98 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC----CCeEEEEECCH-HHHHHHHHH---HHHh-CCCceeE--eccch-hccccCCCCEE
Confidence 569999999999999987753 35677777643 222222211 1111 1111111 11111 11124679999
Q ss_pred ecchhhhccc
Q 045170 109 HSSYGAHWLS 118 (135)
Q Consensus 109 ~Ss~alHWLS 118 (135)
+++..+|+++
T Consensus 99 ~~~~~~~~~~ 108 (195)
T TIGR00477 99 FSTVVFMFLQ 108 (195)
T ss_pred EEecccccCC
Confidence 9999999985
No 33
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=92.76 E-value=0.36 Score=39.58 Aligned_cols=81 Identities=10% Similarity=-0.026 Sum_probs=52.0
Q ss_pred CCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhcc-CCCEEEEecCCcccccccCCCc
Q 045170 26 SNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYK-DLSLFTVGAPGSFHGWLFPTNS 104 (135)
Q Consensus 26 ~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~-~~~~f~~~vpgSFY~rLfP~~S 104 (135)
..+.-+|.|+||.+|..++.+.+.. |+.++..-|+|. .........+... .++ +..++|+|++.-+|..
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~--p~~~~~~~D~~~-----~~~~a~~~~~~~gl~~r--v~~~~~d~~~~~~~~~- 216 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF--PELDSTILNLPG-----AIDLVNENAAEKGVADR--MRGIAVDIYKESYPEA- 216 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC--CCCEEEEEecHH-----HHHHHHHHHHhCCccce--EEEEecCccCCCCCCC-
Confidence 4455799999999998877776654 778888889852 2222222111111 123 3456789997666764
Q ss_pred eeeEecchhhhcc
Q 045170 105 LHLVHSSYGAHWL 117 (135)
Q Consensus 105 vh~~~Ss~alHWL 117 (135)
|.++.+..+|-.
T Consensus 217 -D~v~~~~~lh~~ 228 (306)
T TIGR02716 217 -DAVLFCRILYSA 228 (306)
T ss_pred -CEEEeEhhhhcC
Confidence 888888888743
No 34
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=92.59 E-value=0.18 Score=40.28 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=41.1
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
++-++.|+||.+|+||+.+.+. -+.|.--|....-...+-+... .. +-++-+.- ...-+.-+| +..|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~----G~~VtAvD~s~~al~~l~~~a~----~~-~l~i~~~~--~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ----GFDVTAVDISPVALEKLQRLAE----EE-GLDIRTRV--ADLNDFDFP-EEYDF 97 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT----T-EEEEEESSHHHHHHHHHHHH----HT-T-TEEEEE---BGCCBS-T-TTEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC----CCeEEEEECCHHHHHHHHHHHh----hc-CceeEEEE--ecchhcccc-CCcCE
Confidence 4568999999999999988764 2455555544333333322111 11 11221111 222222333 56788
Q ss_pred Eecchhhhcccc
Q 045170 108 VHSSYGAHWLSK 119 (135)
Q Consensus 108 ~~Ss~alHWLS~ 119 (135)
++|...+|.|.+
T Consensus 98 I~st~v~~fL~~ 109 (192)
T PF03848_consen 98 IVSTVVFMFLQR 109 (192)
T ss_dssp EEEESSGGGS-G
T ss_pred EEEEEEeccCCH
Confidence 888888888764
No 35
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.26 E-value=0.21 Score=40.82 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=25.1
Q ss_pred CcceEEEeecCCCCcc----cHHHHHHhhc---CceeEEecCCCC
Q 045170 27 NEILNVTYFGCSSNPS----TFSVVSSVIE---NEFPFYLNDLLG 64 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~N----Sl~~i~~iI~---peiqv~~nDLP~ 64 (135)
.++++|.|.|||+|-- ++.+....-. +.++|+-.|+..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~ 142 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL 142 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH
Confidence 4579999999999974 3333332221 358888888643
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=91.98 E-value=0.7 Score=36.99 Aligned_cols=86 Identities=10% Similarity=-0.022 Sum_probs=49.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCcee
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLH 106 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh 106 (135)
...-+|+|+||..|..++.+. ..+.+.-+|+--|...+ .-.+.+. ......-.++ .-+.+.+-.--+|++++|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a-~~~g~~~~v~gvD~s~~-~l~~A~~---~~~~~g~~~v--~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAA-RRVGPTGKVIGVDMTPE-MLAKARA---NARKAGYTNV--EFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHH-HHhCCCCEEEEECCCHH-HHHHHHH---HHHHcCCCCE--EEEEcchhhCCCCCCcee
Confidence 345699999999998777544 34455567777775321 1111111 1111111122 122244443336788999
Q ss_pred eEecchhhhcccc
Q 045170 107 LVHSSYGAHWLSK 119 (135)
Q Consensus 107 ~~~Ss~alHWLS~ 119 (135)
++++...+||...
T Consensus 149 ~Vi~~~v~~~~~d 161 (272)
T PRK11873 149 VIISNCVINLSPD 161 (272)
T ss_pred EEEEcCcccCCCC
Confidence 9999999998654
No 37
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=91.86 E-value=0.36 Score=40.66 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=47.8
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
.-+|+|+||.+|..++.+... .+. +|+--| |+-.+..-++....... .+.++-+ +++.+-+ +=.+++.|++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~--g~~-~V~GiD-~S~~~l~q~~a~~~~~~--~~~~i~~--~~~d~e~-lp~~~~FD~V 193 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGA--GAK-LVVGID-PSQLFLCQFEAVRKLLG--NDQRAHL--LPLGIEQ-LPALKAFDTV 193 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHc--CCC-EEEEEc-CCHHHHHHHHHHHHhcC--CCCCeEE--EeCCHHH-CCCcCCcCEE
Confidence 358999999999999876653 232 366667 44444333333322110 0123332 2334322 2116789999
Q ss_pred ecchhhhcccc
Q 045170 109 HSSYGAHWLSK 119 (135)
Q Consensus 109 ~Ss~alHWLS~ 119 (135)
+|..++|++..
T Consensus 194 ~s~~vl~H~~d 204 (322)
T PRK15068 194 FSMGVLYHRRS 204 (322)
T ss_pred EECChhhccCC
Confidence 99999998653
No 38
>PLN02244 tocopherol O-methyltransferase
Probab=91.81 E-value=0.36 Score=40.73 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=48.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhcc-CCCEEEEecCCcccccccCCCce
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYK-DLSLFTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~-~~~~f~~~vpgSFY~rLfP~~Sv 105 (135)
.+.-+|.|+||..|..+..+.... ..+|.--|+..+--. ..+.. .+... .+++-+ +-+...+--||+++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~---g~~v~gvD~s~~~i~-~a~~~---~~~~g~~~~v~~--~~~D~~~~~~~~~~F 187 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY---GANVKGITLSPVQAA-RANAL---AAAQGLSDKVSF--QVADALNQPFEDGQF 187 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc---CCEEEEEECCHHHHH-HHHHH---HHhcCCCCceEE--EEcCcccCCCCCCCc
Confidence 345789999999999998777644 234555554322111 11111 00111 122222 224555555789999
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|++++..++|++..
T Consensus 188 D~V~s~~~~~h~~d 201 (340)
T PLN02244 188 DLVWSMESGEHMPD 201 (340)
T ss_pred cEEEECCchhccCC
Confidence 99999999988754
No 39
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=91.47 E-value=0.41 Score=30.04 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=45.7
Q ss_pred EEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccc-cCCCceeeEe
Q 045170 31 NVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWL-FPTNSLHLVH 109 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rL-fP~~Svh~~~ 109 (135)
+|+|+||..|..+..+.. .+..+++.-|+..+-....-+... .....++-+. -+.+.+.. .+.++.|+++
T Consensus 1 ~ildig~G~G~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS---GPGARVTGVDISPVALELARKAAA----ALLADNVEVL--KGDAEELPPEADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHh----cccccceEEE--EcChhhhccccCCceEEEE
Confidence 589999999998877765 345677777875543332221110 0011222222 13333333 3567899999
Q ss_pred cchhhhcc
Q 045170 110 SSYGAHWL 117 (135)
Q Consensus 110 Ss~alHWL 117 (135)
....+++.
T Consensus 72 ~~~~~~~~ 79 (107)
T cd02440 72 SDPPLHHL 79 (107)
T ss_pred Eccceeeh
Confidence 99988874
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.20 E-value=0.29 Score=42.50 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=45.2
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCE-EEEecCCcccc--cccCCCce
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSL-FTVGAPGSFHG--WLFPTNSL 105 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-f~~~vpgSFY~--rLfP~~Sv 105 (135)
.-+|.|+||..|.++..+.... -+|+-.| ++.-+-....-.... .+++ ++. +.... --+|+++.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~----~~v~giD-----~s~~~l~~a~~~~~~-~~~i~~~~---~d~~~~~~~~~~~~f 104 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA----GQVIALD-----FIESVIKKNESINGH-YKNVKFMC---ADVTSPDLNISDGSV 104 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC----CEEEEEe-----CCHHHHHHHHHHhcc-CCceEEEE---ecccccccCCCCCCE
Confidence 3489999999999999877542 2444444 333221111000000 1232 222 22221 12688999
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|++++..++||++.
T Consensus 105 D~I~~~~~l~~l~~ 118 (475)
T PLN02336 105 DLIFSNWLLMYLSD 118 (475)
T ss_pred EEEehhhhHHhCCH
Confidence 99999999999864
No 41
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.66 E-value=0.34 Score=38.69 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=48.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhcc-CCCE-EEEecCCccccc-ccCCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYK-DLSL-FTVGAPGSFHGW-LFPTN 103 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~-~~~~-f~~~vpgSFY~r-LfP~~ 103 (135)
++..+|.|+||..|..++.+... ..+|+.-|+.. +.-...+.. ..... .+++ ++. ++..+- -++++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~----g~~v~~vD~s~-~~l~~a~~~---~~~~g~~~~v~~~~---~d~~~l~~~~~~ 111 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL----GHQVILCDLSA-EMIQRAKQA---AEAKGVSDNMQFIH---CAAQDIAQHLET 111 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc----CCEEEEEECCH-HHHHHHHHH---HHhcCCccceEEEE---cCHHHHhhhcCC
Confidence 45679999999999988877654 25666667532 111111111 01111 1222 222 333221 14678
Q ss_pred ceeeEecchhhhcccc
Q 045170 104 SLHLVHSSYGAHWLSK 119 (135)
Q Consensus 104 Svh~~~Ss~alHWLS~ 119 (135)
+.|++++...+||+..
T Consensus 112 ~fD~V~~~~vl~~~~~ 127 (255)
T PRK11036 112 PVDLILFHAVLEWVAD 127 (255)
T ss_pred CCCEEEehhHHHhhCC
Confidence 9999999999999975
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=89.97 E-value=0.6 Score=35.70 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=41.9
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccc--cCCCce
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWL--FPTNSL 105 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rL--fP~~Sv 105 (135)
..-+|.|+||.+|..+..+... ...+++--|+-.. . +..... ++-. ++ -+++...+ +++++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~---~~~~~~giD~s~~-~------i~~a~~--~~~~-~~---~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE---KQVRGYGIEIDQD-G------VLACVA--RGVN-VI---QGDLDEGLEAFPDKSF 76 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc---cCCcEEEEeCCHH-H------HHHHHH--cCCe-EE---EEEhhhcccccCCCCc
Confidence 3458999999999987654432 1223333343211 0 000000 1111 12 23333322 678899
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|++++..++||+..
T Consensus 77 D~Vi~~~~l~~~~d 90 (194)
T TIGR02081 77 DYVILSQTLQATRN 90 (194)
T ss_pred CEEEEhhHhHcCcC
Confidence 99999999999865
No 43
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=89.82 E-value=0.43 Score=38.60 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=44.8
Q ss_pred cceEEEeecCCCCcccHHHHHHhhc-CceeEEecCCCCCchHHHhhcchhhhhhccCCCE-EEEecCCcccccccCCCce
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIE-NEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSL-FTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~-peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~-f~~~vpgSFY~rLfP~~Sv 105 (135)
+.-+|.|+||.+|..+..+....-+ ...+++-.|+..+ .+-.. .+.. +++ |.. ++..+--|+++|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~---~l~~A----~~~~--~~~~~~~---~d~~~lp~~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV---AIKYA----AKRY--PQVTFCV---ASSHRLPFADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH---HHHHH----HHhC--CCCeEEE---eecccCCCcCCce
Confidence 4467999999999988877654322 1246777776432 11110 1111 222 222 2333334778899
Q ss_pred eeEecchhhhccc
Q 045170 106 HLVHSSYGAHWLS 118 (135)
Q Consensus 106 h~~~Ss~alHWLS 118 (135)
|++++.++-..+.
T Consensus 153 D~I~~~~~~~~~~ 165 (272)
T PRK11088 153 DAIIRIYAPCKAE 165 (272)
T ss_pred eEEEEecCCCCHH
Confidence 9999887644443
No 44
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=89.65 E-value=0.61 Score=41.15 Aligned_cols=84 Identities=11% Similarity=0.108 Sum_probs=52.0
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
.-.++|+||.+|..++.+.... |+..++--|.-..=-..+-+.+.. ..-.++.+.-.-.......+|++|+|.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~--P~~~~iGIEI~~~~i~~a~~ka~~----~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN--PNKLFIGIEIHTPSIEQVLKQIEL----LNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHH----cCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 3479999999999888776653 677777777633222222222211 1114565543222223356899999999
Q ss_pred ecchhhhccc
Q 045170 109 HSSYGAHWLS 118 (135)
Q Consensus 109 ~Ss~alHWLS 118 (135)
+..+...|-.
T Consensus 197 ~lnFPdPW~K 206 (390)
T PRK14121 197 FVHFPVPWDK 206 (390)
T ss_pred EEeCCCCccc
Confidence 9988888843
No 45
>PTZ00146 fibrillarin; Provisional
Probab=89.44 E-value=1.2 Score=37.91 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=34.9
Q ss_pred CchhHHhhh-hhhhccccccccCCCCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 3 WPSYQSQYW-RVQFNLDLLGEEGISNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 3 ~~~~~~q~~-~~~~~l~ll~~~~~~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
|-.|++--+ +.-..++.+. + ..-.+|+|+||++|..|.. ++.++.++=.||--|+
T Consensus 110 w~p~rSKlaa~i~~g~~~l~---I-kpG~~VLDLGaG~G~~t~~-lAdiVG~~G~VyAVD~ 165 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIP---I-KPGSKVLYLGAASGTTVSH-VSDLVGPEGVVYAVEF 165 (293)
T ss_pred eCCcccHHHHHHHCCcceec---c-CCCCEEEEeCCcCCHHHHH-HHHHhCCCCEEEEEEC
Confidence 666666544 3335566552 2 3346899999999997755 5556665545666663
No 46
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=89.20 E-value=0.87 Score=35.08 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=44.1
Q ss_pred EEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeEec
Q 045170 31 NVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLVHS 110 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~S 110 (135)
+|.|+||..|..+..+.... +..+|.--|+..+-....=+.+.. ... ..++-+ +.+.+-+..+| ++.|++++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~--~~~~v~gid~s~~~~~~a~~~~~~--~gl-~~~i~~--~~~d~~~~~~~-~~fD~I~~ 73 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH--PHLQLHGYTISPEQAEVGRERIRA--LGL-QGRIRI--FYRDSAKDPFP-DTYDLVFG 73 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHh--cCC-CcceEE--EecccccCCCC-CCCCEeeh
Confidence 68999999999887665543 446666667622211111111110 001 112211 12333333334 57899999
Q ss_pred chhhhcccc
Q 045170 111 SYGAHWLSK 119 (135)
Q Consensus 111 s~alHWLS~ 119 (135)
...+|++..
T Consensus 74 ~~~l~~~~~ 82 (224)
T smart00828 74 FEVIHHIKD 82 (224)
T ss_pred HHHHHhCCC
Confidence 999998755
No 47
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=88.77 E-value=0.31 Score=39.44 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=43.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhcc---CCCEEEEecCCcccccccCCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYK---DLSLFTVGAPGSFHGWLFPTN 103 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~---~~~~f~~~vpgSFY~rLfP~~ 103 (135)
.+..+|.|+||.+|-.|..+. +.+.|..+|.--|+. .-...+ -.++.+ ..+|... -|..-+==||++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~-~~~~~~~~v~~vD~s-----~~ML~~--a~~k~~~~~~~~i~~v--~~da~~lp~~d~ 115 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELA-RRVGPNGKVVGVDIS-----PGMLEV--ARKKLKREGLQNIEFV--QGDAEDLPFPDN 115 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHG-GGSS---EEEEEES------HHHHHH--HHHHHHHTT--SEEEE--E-BTTB--S-TT
T ss_pred CCCCEEEEeCCChHHHHHHHH-HHCCCccEEEEecCC-----HHHHHH--HHHHHHhhCCCCeeEE--EcCHHHhcCCCC
Confidence 346799999999998777654 444466677777742 111111 111111 1244332 245544458999
Q ss_pred ceeeEecchhhhccccCCc
Q 045170 104 SLHLVHSSYGAHWLSKMRL 122 (135)
Q Consensus 104 Svh~~~Ss~alHWLS~~P~ 122 (135)
|.|.+++++++|-+...+.
T Consensus 116 sfD~v~~~fglrn~~d~~~ 134 (233)
T PF01209_consen 116 SFDAVTCSFGLRNFPDRER 134 (233)
T ss_dssp -EEEEEEES-GGG-SSHHH
T ss_pred ceeEEEHHhhHHhhCCHHH
Confidence 9999999999998876443
No 48
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=88.69 E-value=0.89 Score=38.64 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=44.5
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
.-+|+|+||.+|..++.++.. .+. .|+--|. +-.+-.-|+.+...... ..++.+ .++.+ +.+-+.++.|.+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~--g~~-~v~GiDp-S~~ml~q~~~~~~~~~~--~~~v~~--~~~~i-e~lp~~~~FD~V 192 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGH--GAK-SLVGIDP-TVLFLCQFEAVRKLLDN--DKRAIL--EPLGI-EQLHELYAFDTV 192 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHc--CCC-EEEEEcC-CHHHHHHHHHHHHHhcc--CCCeEE--EECCH-HHCCCCCCcCEE
Confidence 468999999999987766543 122 3444452 22332223333222111 122222 12222 334345689999
Q ss_pred ecchhhhccc
Q 045170 109 HSSYGAHWLS 118 (135)
Q Consensus 109 ~Ss~alHWLS 118 (135)
+|..+|+|+.
T Consensus 193 ~s~gvL~H~~ 202 (314)
T TIGR00452 193 FSMGVLYHRK 202 (314)
T ss_pred EEcchhhccC
Confidence 9999999974
No 49
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=88.43 E-value=0.75 Score=35.46 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=49.1
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCccc---ccccCCCce
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFH---GWLFPTNSL 105 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY---~rLfP~~Sv 105 (135)
.-+|+|+||.+|..++.+... .|+..++--|+-.. .+-+...... ...-+++-+. -++.. ..++|++++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~--~p~~~v~gvD~~~~---~l~~a~~~~~-~~~l~ni~~i--~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ--NPDKNFLGIEIHTP---IVLAANNKAN-KLGLKNLHVL--CGDANELLDKFFPDGSL 88 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh--CCCCCEEEEEeeHH---HHHHHHHHHH-HhCCCCEEEE--ccCHHHHHHhhCCCCce
Confidence 348999999999998877654 26666666665321 1111111111 1111344332 23433 345788899
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|.++..+.-+|-.+
T Consensus 89 d~v~~~~pdpw~k~ 102 (194)
T TIGR00091 89 SKVFLNFPDPWPKK 102 (194)
T ss_pred eEEEEECCCcCCCC
Confidence 99999998888543
No 50
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=88.26 E-value=0.36 Score=32.80 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=23.0
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
-+|.|+||.+|..++.+.+ ..+..+|.--|.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~--~~~~~~v~gvD~ 33 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALAR--LFPGARVVGVDI 33 (112)
T ss_dssp CEEEEETTTTSHHHHHHHH--HHTTSEEEEEES
T ss_pred CEEEEEcCcCCHHHHHHHh--cCCCCEEEEEeC
Confidence 4789999999999999888 224455555554
No 51
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=88.05 E-value=0.7 Score=39.05 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=16.4
Q ss_pred CCCceeeEecchhhhccc
Q 045170 101 PTNSLHLVHSSYGAHWLS 118 (135)
Q Consensus 101 P~~Svh~~~Ss~alHWLS 118 (135)
+++|||++.+.-|+||..
T Consensus 97 ~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWFD 114 (261)
T ss_pred CCcceeeehhhhhHHhhc
Confidence 489999999999999964
No 52
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=87.51 E-value=0.79 Score=39.19 Aligned_cols=76 Identities=12% Similarity=0.074 Sum_probs=43.4
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeEe
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLVH 109 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~ 109 (135)
-+|+|+||..|..++.+... .|+.+|...|... ..|-..-...........+ +.+..+.. .++..|+++
T Consensus 198 g~VLDlGCG~G~ls~~la~~--~p~~~v~~vDis~---~Al~~A~~nl~~n~l~~~~----~~~D~~~~--~~~~fDlIv 266 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH--SPKIRLTLSDVSA---AALESSRATLAANGLEGEV----FASNVFSD--IKGRFDMII 266 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh--CCCCEEEEEECCH---HHHHHHHHHHHHcCCCCEE----EEcccccc--cCCCccEEE
Confidence 37999999999987766543 3667788888632 1111111111100001111 23344443 257899999
Q ss_pred cchhhhc
Q 045170 110 SSYGAHW 116 (135)
Q Consensus 110 Ss~alHW 116 (135)
|.-.+|+
T Consensus 267 sNPPFH~ 273 (342)
T PRK09489 267 SNPPFHD 273 (342)
T ss_pred ECCCccC
Confidence 9988887
No 53
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=86.83 E-value=2.9 Score=32.23 Aligned_cols=81 Identities=7% Similarity=-0.078 Sum_probs=41.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCcee
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLH 106 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh 106 (135)
....+|.|+||.+|..|.. +..... +|+--|.. ..+.+......+...-.+ +..+.|.+.+.+-+.++.|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~-la~~~~---~v~~vd~~----~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD 146 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAV-LAHLVR---RVFSVERI----KTLQWEAKRRLKQLGLHN--VSVRHGDGWKGWPAYAPFD 146 (212)
T ss_pred CCCCEEEEECCCccHHHHH-HHHHhC---EEEEEeCC----HHHHHHHHHHHHHCCCCc--eEEEECCcccCCCcCCCcC
Confidence 3457999999999999874 444432 34444433 222222211111111122 2223344444343446788
Q ss_pred eEecchhhhcc
Q 045170 107 LVHSSYGAHWL 117 (135)
Q Consensus 107 ~~~Ss~alHWL 117 (135)
++++..+.+++
T Consensus 147 ~I~~~~~~~~~ 157 (212)
T PRK00312 147 RILVTAAAPEI 157 (212)
T ss_pred EEEEccCchhh
Confidence 88877766654
No 54
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.75 E-value=0.66 Score=36.16 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=21.8
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|.|+||.+|..+..+.. .+.+.-+|+--|.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~-~~~~~g~V~~iD~ 105 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAE-AIERRGKVYTVEI 105 (205)
T ss_pred CCEEEEECcCccHHHHHHHH-hcCCCCEEEEEeC
Confidence 46899999999999865544 3332234554444
No 55
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=86.20 E-value=1.5 Score=36.36 Aligned_cols=86 Identities=12% Similarity=0.056 Sum_probs=49.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccc-cCCC--
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWL-FPTN-- 103 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rL-fP~~-- 103 (135)
+...+|.|+||.+|.-|..+++.... ..+++--|+...==....+.+.. . .+.+=+.++-|.|.+-+ +|.+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~---~--~p~~~v~~i~gD~~~~~~~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAA---D--YPQLEVHGICADFTQPLALPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHh---h--CCCceEEEEEEcccchhhhhcccc
Confidence 34568999999999999988877643 35666667643110111111111 1 12333445557776532 3333
Q ss_pred --ceeeEecchhhhccc
Q 045170 104 --SLHLVHSSYGAHWLS 118 (135)
Q Consensus 104 --Svh~~~Ss~alHWLS 118 (135)
...+.++..++++++
T Consensus 136 ~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 136 AGRRLGFFPGSTIGNFT 152 (301)
T ss_pred cCCeEEEEecccccCCC
Confidence 355667667788876
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=85.40 E-value=1.4 Score=33.19 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=44.0
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
+.-+|+|+||.+|.-++.+... .|+.+|...|.-.+=-...=+++.. ..-.+ +..+-...++.+- +++.|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~--~~~~~v~~vDi~~~a~~~a~~n~~~----n~~~~--v~~~~~d~~~~~~-~~~fD~ 101 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKR--GPDAKVTAVDINPDALELAKRNAER----NGLEN--VEVVQSDLFEALP-DGKFDL 101 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHT--STCEEEEEEESBHHHHHHHHHHHHH----TTCTT--EEEEESSTTTTCC-TTCEEE
T ss_pred cCCeEEEecCChHHHHHHHHHh--CCCCEEEEEcCCHHHHHHHHHHHHh----cCccc--ccccccccccccc-ccceeE
Confidence 5678999999999888876653 2556677777643222222222211 11122 3334466666554 788888
Q ss_pred Eecch
Q 045170 108 VHSSY 112 (135)
Q Consensus 108 ~~Ss~ 112 (135)
++|.-
T Consensus 102 Iv~NP 106 (170)
T PF05175_consen 102 IVSNP 106 (170)
T ss_dssp EEE--
T ss_pred EEEcc
Confidence 88753
No 57
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=85.39 E-value=0.61 Score=39.19 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=45.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccC--CCE-EEEecCCcccccccCCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKD--LSL-FTVGAPGSFHGWLFPTN 103 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~--~~~-f~~~vpgSFY~rLfP~~ 103 (135)
..+-+|.|+||..|..|-++...- |.-++.--|-. +...++... +++ |.-| =-...-|+.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw--P~A~i~GiDsS-----------~~Mla~Aa~rlp~~~f~~a----Dl~~w~p~~ 91 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW--PDAVITGIDSS-----------PAMLAKAAQRLPDATFEEA----DLRTWKPEQ 91 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC--CCCeEeeccCC-----------HHHHHHHHHhCCCCceecc----cHhhcCCCC
Confidence 457889999999999887765432 33333332310 111111110 111 1111 123466889
Q ss_pred ceeeEecchhhhccccCC
Q 045170 104 SLHLVHSSYGAHWLSKMR 121 (135)
Q Consensus 104 Svh~~~Ss~alHWLS~~P 121 (135)
..|+.++..+||||..=|
T Consensus 92 ~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 92 PTDLLFANAVLQWLPDHP 109 (257)
T ss_pred ccchhhhhhhhhhccccH
Confidence 999999999999997644
No 58
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=84.13 E-value=1.4 Score=37.50 Aligned_cols=82 Identities=7% Similarity=-0.097 Sum_probs=46.4
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
..+|.|+||..|..+..+.. +..+|+--|.-..=.. ..+.- ........++-+ +-+++.+--+++++.|++
T Consensus 132 g~~ILDIGCG~G~~s~~La~----~g~~V~GID~s~~~i~-~Ar~~--~~~~~~~~~i~~--~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR----MGATVTGVDAVDKNVK-IARLH--ADMDPVTSTIEY--LCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH----cCCEEEEEeCCHHHHH-HHHHH--HHhcCcccceeE--EecCHHHhhhccCCCCEE
Confidence 46899999999998775543 3456666665322111 11100 000000112221 224443323567899999
Q ss_pred ecchhhhcccc
Q 045170 109 HSSYGAHWLSK 119 (135)
Q Consensus 109 ~Ss~alHWLS~ 119 (135)
++...+|++..
T Consensus 203 i~~~vLeHv~d 213 (322)
T PLN02396 203 LSLEVIEHVAN 213 (322)
T ss_pred EEhhHHHhcCC
Confidence 99999999875
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=83.55 E-value=3.8 Score=35.85 Aligned_cols=85 Identities=7% Similarity=-0.068 Sum_probs=48.1
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCC-EEEEecCCcccccccCCCceeeE
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLS-LFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~-~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
-+|.|+||.+|.-++.+.+. .|+.+|..-|... -.+ .......+...... --+..+.+..+..+ +.++.|++
T Consensus 230 ~~VLDLGCGtGvi~i~la~~--~P~~~V~~vD~S~---~Av-~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-~~~~fDlI 302 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK--NPQAKVVFVDESP---MAV-ASSRLNVETNMPEALDRCEFMINNALSGV-EPFRFNAV 302 (378)
T ss_pred CeEEEEeccccHHHHHHHHh--CCCCEEEEEECCH---HHH-HHHHHHHHHcCcccCceEEEEEccccccC-CCCCEEEE
Confidence 38999999999877765544 3788999999742 111 11111111111000 01122234445443 56789999
Q ss_pred ecchhhhccccCC
Q 045170 109 HSSYGAHWLSKMR 121 (135)
Q Consensus 109 ~Ss~alHWLS~~P 121 (135)
+|.--+|+.-.+.
T Consensus 303 lsNPPfh~~~~~~ 315 (378)
T PRK15001 303 LCNPPFHQQHALT 315 (378)
T ss_pred EECcCcccCccCC
Confidence 9987778764443
No 60
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=83.24 E-value=2.3 Score=32.53 Aligned_cols=83 Identities=11% Similarity=-0.086 Sum_probs=43.3
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccC-CCce
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFP-TNSL 105 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP-~~Sv 105 (135)
.+..+|.|+||++|..+..+.+.. ..+...|+...-....=+.+.. ....++-. +-+.+-+...+ +++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~----~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~--~~~d~~~~~~~~~~~~ 113 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG----ANVTGIDASEENIEVAKLHAKK----DPLLKIEY--RCTSVEDLAEKGAKSF 113 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC----CeEEEEeCCHHHHHHHHHHHHH----cCCCceEE--EeCCHHHhhcCCCCCc
Confidence 347799999999998877655421 2366677533221111111110 00001111 11222222222 3689
Q ss_pred eeEecchhhhcccc
Q 045170 106 HLVHSSYGAHWLSK 119 (135)
Q Consensus 106 h~~~Ss~alHWLS~ 119 (135)
|++++...+|+...
T Consensus 114 D~i~~~~~l~~~~~ 127 (224)
T TIGR01983 114 DVVTCMEVLEHVPD 127 (224)
T ss_pred cEEEehhHHHhCCC
Confidence 99999988887654
No 61
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=81.58 E-value=2.6 Score=33.10 Aligned_cols=74 Identities=14% Similarity=0.045 Sum_probs=49.5
Q ss_pred CCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCce
Q 045170 26 SNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSL 105 (135)
Q Consensus 26 ~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Sv 105 (135)
.++.-+|+|+|.++|..++.+++.- |.+++..=|||.. ...... .++|-. +||.|+ .=+|. -
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~--P~l~~~v~Dlp~v-----~~~~~~------~~rv~~--~~gd~f-~~~P~--~ 159 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY--PNLRATVFDLPEV-----IEQAKE------ADRVEF--VPGDFF-DPLPV--A 159 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS--TTSEEEEEE-HHH-----HCCHHH------TTTEEE--EES-TT-TCCSS--E
T ss_pred ccCccEEEeccCcchHHHHHHHHHC--CCCcceeeccHhh-----hhcccc------cccccc--ccccHH-hhhcc--c
Confidence 4445589999999998877664322 8899999999753 222221 234433 679999 77888 8
Q ss_pred eeEecchhhhcc
Q 045170 106 HLVHSSYGAHWL 117 (135)
Q Consensus 106 h~~~Ss~alHWL 117 (135)
|+++-..-||=.
T Consensus 160 D~~~l~~vLh~~ 171 (241)
T PF00891_consen 160 DVYLLRHVLHDW 171 (241)
T ss_dssp SEEEEESSGGGS
T ss_pred cceeeehhhhhc
Confidence 998888888754
No 62
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=80.07 E-value=7.1 Score=30.63 Aligned_cols=81 Identities=7% Similarity=-0.084 Sum_probs=40.0
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
+.-+|.|+||.+|..|..+. +.+.+.-+|+--|.-. +.-...+ ...++..-.++- .+-|....-..+.+..|.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la-~~~~~~~~V~~vE~~~-~~~~~a~---~~l~~~g~~~v~--~~~gd~~~~~~~~~~fD~ 148 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA-EIVGKSGKVVTIERIP-ELAEKAK---KTLKKLGYDNVE--VIVGDGTLGYEENAPYDR 148 (212)
T ss_pred CcCEEEEECCcccHHHHHHH-HhcCCCCEEEEEeCCH-HHHHHHH---HHHHHcCCCCeE--EEECCcccCCCcCCCcCE
Confidence 45799999999999996544 3343333444333211 1111111 111111112322 222444444445667777
Q ss_pred Eecchhhh
Q 045170 108 VHSSYGAH 115 (135)
Q Consensus 108 ~~Ss~alH 115 (135)
+++..+.+
T Consensus 149 I~~~~~~~ 156 (212)
T PRK13942 149 IYVTAAGP 156 (212)
T ss_pred EEECCCcc
Confidence 77766643
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=79.30 E-value=1.5 Score=29.80 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=25.2
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLL 63 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP 63 (135)
.-+|.|+||..|..++.+.+.. |+.+|+--|..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~--~~~~v~~vD~s 52 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV--PNGRVYAIERN 52 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC--CCceEEEEcCC
Confidence 3499999999999998876542 45677777763
No 64
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=78.93 E-value=0.83 Score=39.08 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=24.8
Q ss_pred hhccccccccCCCCcceEEEeecCCCCcccHHHHH
Q 045170 14 QFNLDLLGEEGISNEILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 14 ~~~l~ll~~~~~~~~~~~IaDlGCS~G~NSl~~i~ 48 (135)
..||.+|++ ...+.-++.|+||.||--++.+..
T Consensus 150 ~lcL~~Le~--~~~~g~~vlDvGcGSGILaIAa~k 182 (300)
T COG2264 150 SLCLEALEK--LLKKGKTVLDVGCGSGILAIAAAK 182 (300)
T ss_pred HHHHHHHHH--hhcCCCEEEEecCChhHHHHHHHH
Confidence 356666666 334678999999999998887765
No 65
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=76.27 E-value=1.5 Score=37.18 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.3
Q ss_pred hhccccccccCCCCcceEEEeecCCCCcccHHHHH
Q 045170 14 QFNLDLLGEEGISNEILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 14 ~~~l~ll~~~~~~~~~~~IaDlGCS~G~NSl~~i~ 48 (135)
..||.+|.+... +.-+|.|+||.||--++.+..
T Consensus 149 ~lcl~~l~~~~~--~g~~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 149 RLCLELLEKYVK--PGKRVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp HHHHHHHHHHSS--TTSEEEEES-TTSHHHHHHHH
T ss_pred HHHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHH
Confidence 356666665322 234999999999998887765
No 66
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=73.39 E-value=1.7 Score=35.89 Aligned_cols=18 Identities=22% Similarity=0.456 Sum_probs=12.0
Q ss_pred CCcceEEEeecCCCCccc
Q 045170 26 SNEILNVTYFGCSSNPST 43 (135)
Q Consensus 26 ~~~~~~IaDlGCS~G~NS 43 (135)
.|+..+|||+||.++.-+
T Consensus 70 ~~~~~viaD~GCGdA~la 87 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA 87 (219)
T ss_dssp S-TTS-EEEES-TT-HHH
T ss_pred cCCCEEEEECCCchHHHH
Confidence 577899999999999766
No 67
>PRK04266 fibrillarin; Provisional
Probab=73.32 E-value=2.4 Score=34.12 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=22.0
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|+|+||++|..++.+.. ++. .-.|+--|.
T Consensus 73 g~~VlD~G~G~G~~~~~la~-~v~-~g~V~avD~ 104 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSD-IVE-EGVVYAVEF 104 (226)
T ss_pred CCEEEEEccCCCHHHHHHHH-hcC-CCeEEEEEC
Confidence 46899999999998877654 333 334555554
No 68
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=72.69 E-value=2.9 Score=33.12 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=25.7
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCC
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLL 63 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP 63 (135)
+..+|.|+||++|..++.+.... |..+++..|..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~--~~~~v~~iDis 141 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER--PDAEVTAVDIS 141 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC--CCCEEEEEECC
Confidence 45789999999999888776554 45667777753
No 69
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=72.30 E-value=3.1 Score=32.10 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=45.2
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeE
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLV 108 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~ 108 (135)
..+|.|+||.+|..++.+.. ..|..+|+.-|...+=-..+=+.+ ++..-.++- -+-++.-+ +.+.++.|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--~~~~~~V~~iD~s~~~~~~a~~~~----~~~~~~~i~--~i~~d~~~-~~~~~~fD~I 113 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--ARPELKLTLLESNHKKVAFLREVK----AELGLNNVE--IVNGRAED-FQHEEQFDVI 113 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--HCCCCeEEEEeCcHHHHHHHHHHH----HHhCCCCeE--EEecchhh-ccccCCccEE
Confidence 56899999999998887742 335567777776443111111111 111112332 22234322 3456799999
Q ss_pred ecchhhhcccc
Q 045170 109 HSSYGAHWLSK 119 (135)
Q Consensus 109 ~Ss~alHWLS~ 119 (135)
+|.. +|.+..
T Consensus 114 ~s~~-~~~~~~ 123 (181)
T TIGR00138 114 TSRA-LASLNV 123 (181)
T ss_pred Eehh-hhCHHH
Confidence 8864 665544
No 70
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=71.92 E-value=7.9 Score=31.89 Aligned_cols=104 Identities=16% Similarity=0.050 Sum_probs=57.3
Q ss_pred HhhhhhhhccccccccCCCCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEE
Q 045170 8 SQYWRVQFNLDLLGEEGISNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLF 87 (135)
Q Consensus 8 ~q~~~~~~~l~ll~~~~~~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f 87 (135)
..|+.+...|.-+....-.-++-+|.|+||..|.- +.++.++.....+++.-| ++-....+-+.|-......+.
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta-~wAa~~~~~~~~~~~~vd-~s~~~~~l~~~l~~~~~~~~~---- 86 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTA-LWAAREVWPSLKEYTCVD-RSPEMLELAKRLLRAGPNNRN---- 86 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHH-HHHHHHHhcCceeeeeec-CCHHHHHHHHHHHhccccccc----
Confidence 35666666666665533233577999999999864 445555555334555666 455555555555331111110
Q ss_pred EEecCCcccccccCCCceeeEecchhhhccc
Q 045170 88 TVGAPGSFHGWLFPTNSLHLVHSSYGAHWLS 118 (135)
Q Consensus 88 ~~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS 118 (135)
......++....+-..-|+++++++|.=|.
T Consensus 87 -~~~~~~~~~~~~~~~~~DLvi~s~~L~EL~ 116 (274)
T PF09243_consen 87 -AEWRRVLYRDFLPFPPDDLVIASYVLNELP 116 (274)
T ss_pred -chhhhhhhcccccCCCCcEEEEehhhhcCC
Confidence 011233443333333339999999986443
No 71
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=71.59 E-value=3 Score=31.97 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=17.9
Q ss_pred CcceEEEeecCCCCcccHHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~ 48 (135)
+...+|.|+||.+|..+..+..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~ 83 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLAR 83 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHH
Confidence 3457999999999998877654
No 72
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=71.05 E-value=2 Score=35.34 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=20.7
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|.|+||.+|..++.+... . .-+|+--|.
T Consensus 160 g~~VLDvGcGsG~lai~aa~~--g-~~~V~avDi 190 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKL--G-AAKVVGIDI 190 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHc--C-CCeEEEEEC
Confidence 468999999999888765431 1 124555554
No 73
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=70.83 E-value=3.6 Score=32.21 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=24.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
++..+|.|+||.+|..++.+.... |..+|+--|.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~--~~~~V~giD~ 77 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR--PELKVTLVDS 77 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC--CCCeEEEEeC
Confidence 346789999999999888776532 4455666664
No 74
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=70.36 E-value=3.8 Score=34.86 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=46.2
Q ss_pred hHHhhhhhhhccccccccCCCCcceEEEeecCCCCcccHHHHHHh-hc-----------------------C-ceeEEec
Q 045170 6 YQSQYWRVQFNLDLLGEEGISNEILNVTYFGCSSNPSTFSVVSSV-IE-----------------------N-EFPFYLN 60 (135)
Q Consensus 6 ~~~q~~~~~~~l~ll~~~~~~~~~~~IaDlGCS~G~NSl~~i~~i-I~-----------------------p-eiqv~~n 60 (135)
.+-|.+.+++.+..| .+..-.++.|+||.-|..++.++.+. ++ . .++|.+-
T Consensus 54 ~eAQ~~k~~~~~~kl----~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~ 129 (283)
T COG2230 54 EEAQRAKLDLILEKL----GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ 129 (283)
T ss_pred HHHHHHHHHHHHHhc----CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec
Confidence 356777777766666 34557999999999999999998875 22 1 4889888
Q ss_pred CCCCCchHHHhhcch
Q 045170 61 DLLGNDFNMLFQGLS 75 (135)
Q Consensus 61 DLP~NDFntLF~~l~ 75 (135)
|. +||+.-|..+-
T Consensus 130 d~--rd~~e~fDrIv 142 (283)
T COG2230 130 DY--RDFEEPFDRIV 142 (283)
T ss_pred cc--cccccccceee
Confidence 86 45655565543
No 75
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=69.42 E-value=3.6 Score=31.13 Aligned_cols=33 Identities=3% Similarity=-0.009 Sum_probs=24.7
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
+.-+|.|+||.+|..++.+.+. .|..+|+.-|.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~--~~~~~v~~vD~ 63 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQ--FPSLQVTAIER 63 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHH--CCCCEEEEEEC
Confidence 4568999999999999887764 24456666665
No 76
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=69.17 E-value=3 Score=33.96 Aligned_cols=36 Identities=19% Similarity=-0.023 Sum_probs=24.7
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGN 65 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~N 65 (135)
.+.-+++|+||++|.-|..++.. .--+|+--|.-.+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~---ga~~v~avD~~~~ 109 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK---GAKEVYGVDVGYN 109 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc---CCCEEEEEeCCHH
Confidence 35568999999999999877764 1134555555443
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=68.06 E-value=4.2 Score=31.62 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=23.2
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.+.-+|.|+||.+|..|..+.. ...++.+|+--|.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~-~~~~~g~V~~vD~ 110 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAE-IVGRDGLVVSIER 110 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHH-HhCCCCEEEEEeC
Confidence 3456999999999999975443 3333444554443
No 78
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=67.51 E-value=5.6 Score=29.83 Aligned_cols=37 Identities=11% Similarity=-0.077 Sum_probs=26.1
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCC
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGN 65 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~N 65 (135)
+..++.|+|||.|+-|-.++... .+.-.|+--|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~-~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG-GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST-TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecc-cccceEEEEecccc
Confidence 57999999999999888777665 33455555565544
No 79
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=66.77 E-value=5.5 Score=34.48 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=43.2
Q ss_pred CCCcceEEEeecCCCCcccHHHHHHhhc------------------C------ceeEEecCCCCCchHHHhhcchhhhhh
Q 045170 25 ISNEILNVTYFGCSSNPSTFSVVSSVIE------------------N------EFPFYLNDLLGNDFNMLFQGLSSFAER 80 (135)
Q Consensus 25 ~~~~~~~IaDlGCS~G~NSl~~i~~iI~------------------p------eiqv~~nDLP~NDFntLF~~l~~~~~~ 80 (135)
.-|..+.|||+||..+.-+...-..+.. | +|-||-=-|=+.|++.-++.......-
T Consensus 177 ~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~ 256 (325)
T KOG3045|consen 177 RRPKNIVIADFGCGEAKIASSERHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKP 256 (325)
T ss_pred hCcCceEEEecccchhhhhhccccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhcc
Confidence 3588999999999999877532222222 2 377777777788888877766543211
Q ss_pred ccCCCEEEEecCCcc
Q 045170 81 YKDLSLFTVGAPGSF 95 (135)
Q Consensus 81 ~~~~~~f~~~vpgSF 95 (135)
++-+|++-|-.-|
T Consensus 257 --gG~l~IAEv~SRf 269 (325)
T KOG3045|consen 257 --GGLLYIAEVKSRF 269 (325)
T ss_pred --CceEEEEehhhhc
Confidence 2346666554444
No 80
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=66.72 E-value=4.4 Score=31.34 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=18.1
Q ss_pred CcceEEEeecCCCCcccHHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~ 48 (135)
.+.-+|.|+||++|..+..+..
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~ 75 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAK 75 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHH
Confidence 3467999999999998887654
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=66.46 E-value=2.4 Score=34.02 Aligned_cols=21 Identities=19% Similarity=0.147 Sum_probs=16.5
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVV 47 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i 47 (135)
.+.-+|.|+||.+|..++.+.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~ 138 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAA 138 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHH
Confidence 345789999999998777544
No 82
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=66.11 E-value=4.7 Score=30.59 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=18.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHh
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
++.-+|+|+||.+|.-+..+....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~ 54 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQV 54 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHh
Confidence 445689999999999887766554
No 83
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=65.19 E-value=9.2 Score=31.24 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=46.1
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhc------------------------CceeEEecCCCCCchHHHhhcchhhhhhcc
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIE------------------------NEFPFYLNDLLGNDFNMLFQGLSSFAERYK 82 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~------------------------peiqv~~nDLP~NDFntLF~~l~~~~~~~~ 82 (135)
...-+|.++||.||++|-.+-+ ++. ..+.|.+.|- .+-++.. -.
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG--------~~G~~~~---aP 138 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG--------SKGWPEE---AP 138 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc--------ccCCCCC---CC
Confidence 4468999999999999975433 322 2477777774 1111110 00
Q ss_pred CCCEEEEe----cCCcccccccCCCceeeEec
Q 045170 83 DLSLFTVG----APGSFHGWLFPTNSLHLVHS 110 (135)
Q Consensus 83 ~~~~f~~~----vpgSFY~rLfP~~Svh~~~S 110 (135)
=+.|++.| +|.++.+||-|.+-+=+-+-
T Consensus 139 yD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence 14677664 78899999998886655443
No 84
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=64.49 E-value=4 Score=30.63 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=21.8
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|+|+||.+|..++.+.... + +|+-.|+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~--~--~v~~vD~ 49 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKG--K--CILTTDI 49 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcC--C--EEEEEEC
Confidence 3579999999999888766532 2 5666665
No 85
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=64.00 E-value=4.5 Score=30.22 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=18.5
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|.|+||..|..|..+++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc
Confidence 348999999999999988876
No 86
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=62.58 E-value=22 Score=27.81 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=46.5
Q ss_pred EEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEE-ecCCcccccccCCCceeeEe
Q 045170 31 NVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTV-GAPGSFHGWLFPTNSLHLVH 109 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~-~vpgSFY~rLfP~~Svh~~~ 109 (135)
.+.|+||..|...+.... -.|+..++--|.-.+=. -+.+..... ..-+|+.+. +=...+...++|++||+-++
T Consensus 20 l~lEIG~G~G~~l~~~A~--~~Pd~n~iGiE~~~~~v---~~a~~~~~~-~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK--RNPDINFIGIEIRKKRV---AKALRKAEK-RGLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHH--HSTTSEEEEEES-HHHH---HHHHHHHHH-HTTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHH--HCCCCCEEEEecchHHH---HHHHHHHHh-hcccceEEEEccHHHHHhhcccCCchheEE
Confidence 899999999987766543 22676666666643332 233222211 122566655 44566688899999999888
Q ss_pred cchhhhcc
Q 045170 110 SSYGAHWL 117 (135)
Q Consensus 110 Ss~alHWL 117 (135)
=.+-=-|-
T Consensus 94 i~FPDPWp 101 (195)
T PF02390_consen 94 INFPDPWP 101 (195)
T ss_dssp EES-----
T ss_pred EeCCCCCc
Confidence 76554443
No 87
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=61.84 E-value=8.1 Score=32.04 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=23.8
Q ss_pred HhhhhhhhccccccccCCCCcceEEEeecCCCCcccHHHHHH
Q 045170 8 SQYWRVQFNLDLLGEEGISNEILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 8 ~q~~~~~~~l~ll~~~~~~~~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
-|..-++.-+..+ ....--+|.|+||.-|..++.+.++
T Consensus 46 AQ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 46 AQERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp HHHHHHHHHHTTT----T--TT-EEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHH
Confidence 3444444444443 2344579999999999999988886
No 88
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=59.79 E-value=5.5 Score=30.84 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=40.8
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHL 107 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~ 107 (135)
+..+|.|+||.+|..++.+.... |..+++..|.-..=....=+.+. ...-.++ ..+-+.+.+ .+++++.|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~----~~~~~~~--~~~~~d~~~-~~~~~~fD~ 157 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER--PDARVTAVDISPEALAVARKNAA----RLGLDNV--TFLQSDWFE-PLPGGKFDL 157 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHH----HcCCCeE--EEEECchhc-cCcCCceeE
Confidence 45689999999999888776542 44566666643221111111111 1111122 223355554 456788888
Q ss_pred Eecc
Q 045170 108 VHSS 111 (135)
Q Consensus 108 ~~Ss 111 (135)
+++.
T Consensus 158 Vi~n 161 (251)
T TIGR03534 158 IVSN 161 (251)
T ss_pred EEEC
Confidence 8873
No 89
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=58.55 E-value=6.2 Score=31.41 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=18.7
Q ss_pred cceEEEeecCCCCcccHHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
..-+|.|+||..|+|++.+.+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~ 55 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ 55 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC
Confidence 4459999999999999988763
No 90
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=58.51 E-value=4.4 Score=38.23 Aligned_cols=69 Identities=30% Similarity=0.363 Sum_probs=44.8
Q ss_pred hhHHhhhhhhhccccccccC-----CCC---------cceEEEeecCCCCcc--cH--HHHHHhhc-Cc-----------
Q 045170 5 SYQSQYWRVQFNLDLLGEEG-----ISN---------EILNVTYFGCSSNPS--TF--SVVSSVIE-NE----------- 54 (135)
Q Consensus 5 ~~~~q~~~~~~~l~ll~~~~-----~~~---------~~~~IaDlGCS~G~N--Sl--~~i~~iI~-pe----------- 54 (135)
+|-|| +..||+||+.+. +-| ..++++|||.|+-.+ -+ .+++..-. ||
T Consensus 540 sYaqQ---LflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~i 616 (752)
T KOG0670|consen 540 SYAQQ---LFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPI 616 (752)
T ss_pred HHHHH---HHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCc
Confidence 68777 678999999864 222 358899999998663 33 34543322 22
Q ss_pred --------------eeEEecCCCCCchHHHhhcchh
Q 045170 55 --------------FPFYLNDLLGNDFNMLFQGLSS 76 (135)
Q Consensus 55 --------------iqv~~nDLP~NDFntLF~~l~~ 76 (135)
=+|.|---..|+-=.||..|-+
T Consensus 617 D~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KG 652 (752)
T KOG0670|consen 617 DTWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKG 652 (752)
T ss_pred cceeeceeeEEeeccceecCCCCcHHHHHHHHHhcC
Confidence 2455666667777777777654
No 91
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=57.92 E-value=8.1 Score=34.73 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=25.3
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
..+|.|+||.+|..++.+.... |..+|+.-|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~--p~~~v~avDi 170 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL--PNANVIATDI 170 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC--CCCeEEEEEC
Confidence 4689999999999998776653 5567777776
No 92
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=57.84 E-value=19 Score=32.43 Aligned_cols=106 Identities=11% Similarity=-0.014 Sum_probs=62.0
Q ss_pred hHHhhhhhhhccccccccC--C-CCcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhcc
Q 045170 6 YQSQYWRVQFNLDLLGEEG--I-SNEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYK 82 (135)
Q Consensus 6 ~~~q~~~~~~~l~ll~~~~--~-~~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~ 82 (135)
-+.|+..++.-+|.+.-.. . ..+.-.+.|+||..|...+..... .|+..++--|.-. +.+-+.+....+. .
T Consensus 322 ~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~--~p~~~~iGiE~~~---~~~~~~~~~~~~~-~ 395 (506)
T PRK01544 322 SGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKM--NPDALFIGVEVYL---NGVANVLKLAGEQ-N 395 (506)
T ss_pred CHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHh--CCCCCEEEEEeeH---HHHHHHHHHHHHc-C
Confidence 3567777777777665422 2 345677999999999987765433 2553333333322 3333333322111 1
Q ss_pred CCCEEEEecCCcccccccCCCceeeEecchhhhcc
Q 045170 83 DLSLFTVGAPGSFHGWLFPTNSLHLVHSSYGAHWL 117 (135)
Q Consensus 83 ~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWL 117 (135)
-.|+.+..-...+..+.||++|||-++-.+.=-|=
T Consensus 396 l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWp 430 (506)
T PRK01544 396 ITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWI 430 (506)
T ss_pred CCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCC
Confidence 14665543333446788999999999888766663
No 93
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.52 E-value=6.1 Score=32.22 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=15.5
Q ss_pred ceEEEeecCCCCcccHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVV 47 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i 47 (135)
.-+|+|+||.+|.-++...
T Consensus 46 g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4579999999999888553
No 94
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=57.32 E-value=22 Score=30.94 Aligned_cols=87 Identities=7% Similarity=0.024 Sum_probs=46.4
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccc--cccCCCcee
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHG--WLFPTNSLH 106 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~--rLfP~~Svh 106 (135)
.-+|.|+||+.|.-|+.+...+ . .-+|+-.|.-.+=-..+-+++.. .. -.+-+..+.+.-.+ ...+.++.|
T Consensus 239 g~~VLDlcag~G~kt~~la~~~-~-~~~v~a~D~~~~~l~~~~~n~~r----~g-~~~~v~~~~~d~~~~~~~~~~~~fD 311 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA-P-QAQVVALDIHEHRLKRVYENLKR----LG-LTIKAETKDGDGRGPSQWAENEQFD 311 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc-C-CCeEEEEeCCHHHHHHHHHHHHH----cC-CCeEEEEeccccccccccccccccC
Confidence 4689999999999999776543 2 56777778644333333333322 11 11222222232221 122567788
Q ss_pred eEec---chhhhccccCCc
Q 045170 107 LVHS---SYGAHWLSKMRL 122 (135)
Q Consensus 107 ~~~S---s~alHWLS~~P~ 122 (135)
.++. .+++.-+.+.|+
T Consensus 312 ~VllDaPcSg~G~~~~~p~ 330 (426)
T TIGR00563 312 RILLDAPCSATGVIRRHPD 330 (426)
T ss_pred EEEEcCCCCCCcccccCcc
Confidence 8874 233343444443
No 95
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=57.15 E-value=10 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=18.3
Q ss_pred eEEEeecCCCCcccHHHHHHh
Q 045170 30 LNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~i 50 (135)
.+|.|.||.+|.-++.+....
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~ 22 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG 22 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC
Confidence 489999999999888888765
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=56.96 E-value=7.5 Score=28.56 Aligned_cols=21 Identities=14% Similarity=-0.019 Sum_probs=17.3
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|.|+||.+|..++.+...
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~ 44 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN 44 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh
Confidence 458999999999988877654
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=56.52 E-value=9 Score=31.34 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=22.6
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.+|.|+||.+|.-++.+.... |..+|+-.|.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~--~~~~v~avDi 146 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF--PNAEVIAVDI 146 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC--CCCEEEEEEC
Confidence 689999999998888766543 3455666664
No 98
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=56.15 E-value=7.8 Score=31.63 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=30.1
Q ss_pred cceEEEeecCCCCcccHHHHHHh-----hc---------------CceeEEecCCCCCchHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSV-----IE---------------NEFPFYLNDLLGNDFNM 69 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~i-----I~---------------peiqv~~nDLP~NDFnt 69 (135)
+.-+|.|+||.+|.-|..+.... || +.+++...|...-++..
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 44689999999999998887742 11 24777777776655544
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=55.80 E-value=10 Score=28.95 Aligned_cols=21 Identities=5% Similarity=-0.144 Sum_probs=17.2
Q ss_pred cceEEEeecCCCCcccHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~ 48 (135)
..-+|.|+||.+|..++.+..
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~ 60 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGL 60 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 345899999999999887753
No 100
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=54.71 E-value=8.4 Score=32.71 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=18.6
Q ss_pred cceEEEeecCCCCcccHHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
+..+|.|+||.+|..++.+...
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~ 165 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE 165 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC
Confidence 3569999999999999887763
No 101
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=54.66 E-value=7.5 Score=33.72 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.9
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~ 48 (135)
--+|+|+||..|.-++.+..
T Consensus 116 gk~VLDIGC~nGY~~frM~~ 135 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLG 135 (315)
T ss_pred CCEEEEecCCCcHHHHHHhh
Confidence 45899999999998887655
No 102
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=54.47 E-value=20 Score=30.47 Aligned_cols=80 Identities=11% Similarity=0.209 Sum_probs=47.9
Q ss_pred EEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccCCCceeeEec
Q 045170 31 NVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFPTNSLHLVHS 110 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~S 110 (135)
+|.+.||.-|.+.+.+++..=++.+.||..|...|--+-+=++-. ..+ ..-.-|+.-+-++=-..-++.+|||++.-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~-~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG-YDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc-cch--hhhcccceeccchhccCCCCcCccceEEE
Confidence 899999999988777776665577999999865543222111110 000 01123344333333566677889998766
Q ss_pred chh
Q 045170 111 SYG 113 (135)
Q Consensus 111 s~a 113 (135)
.+.
T Consensus 151 IFv 153 (264)
T KOG2361|consen 151 IFV 153 (264)
T ss_pred EEE
Confidence 554
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=54.35 E-value=6.3 Score=30.85 Aligned_cols=31 Identities=10% Similarity=-0.044 Sum_probs=21.2
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|.|+||.+|..++.+... ..-+|+.-|.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~---~~~~v~~vD~ 67 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA---GAGSVTAVDI 67 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc---CCCeEEEEEC
Confidence 458999999999988876542 1124555554
No 104
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=53.23 E-value=11 Score=32.58 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=18.1
Q ss_pred cceEEEeecCCCCcccHHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
..-+|.|+||..|..++.+.+.
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~ 188 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH 188 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH
Confidence 3468999999999999877653
No 105
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=52.77 E-value=13 Score=25.93 Aligned_cols=61 Identities=26% Similarity=0.421 Sum_probs=44.2
Q ss_pred hhhhhcccccccc----CCCCcceEEEeecCCCCcccHHHHHHhhc---C-ceeEEecCCCCCchHHHhhcc
Q 045170 11 WRVQFNLDLLGEE----GISNEILNVTYFGCSSNPSTFSVVSSVIE---N-EFPFYLNDLLGNDFNMLFQGL 74 (135)
Q Consensus 11 ~~~~~~l~ll~~~----~~~~~~~~IaDlGCS~G~NSl~~i~~iI~---p-eiqv~~nDLP~NDFntLF~~l 74 (135)
||.--+.+++... ....+.++|.=.||++.+|-+..+...-+ . .+++++||. +...+-|++
T Consensus 2 wG~tpA~dl~~~~~~~~~~~~~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~---~~~vlARnl 70 (100)
T PF14737_consen 2 WGNTPATDLLNLYLNEGEPPDEDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDI---NPEVLARNL 70 (100)
T ss_pred cCCcccHHHHHhhhhcCCCCCCCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecC---cHHHHHHHH
Confidence 4455566666552 24567899999999999999988887766 3 699999995 555555544
No 106
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=52.50 E-value=8.4 Score=32.15 Aligned_cols=24 Identities=4% Similarity=0.027 Sum_probs=20.5
Q ss_pred CCcceEEEeecCCCCcccHHHHHH
Q 045170 26 SNEILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 26 ~~~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.+..-+|+|+||..|.-++.+.+.
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhcc
Confidence 345789999999999999988776
No 107
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=52.29 E-value=7.6 Score=31.42 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=12.2
Q ss_pred ceEEEeecCCCCcc
Q 045170 29 ILNVTYFGCSSNPS 42 (135)
Q Consensus 29 ~~~IaDlGCS~G~N 42 (135)
.-+|.|+||..|..
T Consensus 14 gsrVLDLGCGdG~L 27 (193)
T PF07021_consen 14 GSRVLDLGCGDGEL 27 (193)
T ss_pred CCEEEecCCCchHH
Confidence 57999999999974
No 108
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=52.23 E-value=9 Score=32.49 Aligned_cols=34 Identities=24% Similarity=0.122 Sum_probs=25.2
Q ss_pred HhhhhhhhccccccccCCCCcceEEEeecCCCCccc
Q 045170 8 SQYWRVQFNLDLLGEEGISNEILNVTYFGCSSNPST 43 (135)
Q Consensus 8 ~q~~~~~~~l~ll~~~~~~~~~~~IaDlGCS~G~NS 43 (135)
+|+--.|-||.||.- -.+++--|.|+||.+|-.+
T Consensus 32 IQ~em~eRaLELLal--p~~~~~~iLDIGCGsGLSg 65 (270)
T KOG1541|consen 32 IQAEMAERALELLAL--PGPKSGLILDIGCGSGLSG 65 (270)
T ss_pred ehHHHHHHHHHHhhC--CCCCCcEEEEeccCCCcch
Confidence 577777888888844 1235888999999999643
No 109
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=51.95 E-value=8.5 Score=33.52 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=30.1
Q ss_pred EEEeecCCCCcccHHHHHHh-------hc-------------------CceeEEecCCCCCchHHH
Q 045170 31 NVTYFGCSSNPSTFSVVSSV-------IE-------------------NEFPFYLNDLLGNDFNML 70 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~i-------I~-------------------peiqv~~nDLP~NDFntL 70 (135)
.|+|+||.+|.-|+.++..+ |+ -.|.|.++|..+-=|+..
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~ 216 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEH 216 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccc
Confidence 69999999999999887754 22 248888888766555543
No 110
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=51.92 E-value=11 Score=28.88 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=17.1
Q ss_pred cceEEEeecCCCCcccHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~ 48 (135)
..-+|+|+||.+|.-++.+..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~ 60 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASL 60 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHH
Confidence 456899999999998887554
No 111
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=51.81 E-value=9.5 Score=31.47 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=23.4
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
..+|+|+||.+|..++.+.... |..+|+--|.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~--~~~~v~avDi 153 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF--PEAEVDAVDI 153 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC--CCCEEEEEEC
Confidence 4689999999999888877643 3455555554
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=49.52 E-value=10 Score=30.67 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.9
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
..+|.|+||.+|.-++.+...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~ 107 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAA 107 (251)
T ss_pred CCEEEEecCchHHHHHHHHHh
Confidence 468999999999999887754
No 113
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=48.03 E-value=15 Score=30.75 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=21.8
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.+|.|+||.+|..++.+.... |..+|+-.|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~--p~~~V~avDi 165 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF--PDAEVDAVDI 165 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC--CCCEEEEEeC
Confidence 589999999999888776542 3344554444
No 114
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=47.69 E-value=11 Score=32.47 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.5
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 045170 30 LNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~ 49 (135)
-+|+|+||.-|.-.+.+.+.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~ 179 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKK 179 (300)
T ss_pred CcEEEeCCCccHHHHHHHHh
Confidence 38999999999988776653
No 115
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=47.31 E-value=12 Score=29.75 Aligned_cols=23 Identities=9% Similarity=-0.040 Sum_probs=18.9
Q ss_pred CcceEEEeecCCCCcccHHHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
++.-+|.|.||..|.|++.+.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~ 58 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ 58 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC
Confidence 34469999999999999987663
No 116
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=45.90 E-value=17 Score=30.49 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=22.2
Q ss_pred CCCcceEEEeecCCCCcccHHHHHH
Q 045170 25 ISNEILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 25 ~~~~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
+..+.-++.|+|+|+|+-|-.+++.
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHc
Confidence 5677889999999999999988875
No 117
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=45.74 E-value=13 Score=30.84 Aligned_cols=21 Identities=5% Similarity=-0.032 Sum_probs=17.9
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|.|+||.+|..++.+.+.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~ 194 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP 194 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc
Confidence 468999999999999887763
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=45.62 E-value=14 Score=28.66 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=16.5
Q ss_pred cceEEEeecCCCCcccHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~ 48 (135)
...+|.|+||+.|..+..+.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~ 68 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMAR 68 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHH
Confidence 467899999999987765544
No 119
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=45.59 E-value=13 Score=29.43 Aligned_cols=21 Identities=10% Similarity=-0.126 Sum_probs=17.5
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|.|+||.+|.-++.+++.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr 74 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR 74 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc
Confidence 358999999999999877664
No 120
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=44.90 E-value=15 Score=26.81 Aligned_cols=37 Identities=11% Similarity=0.072 Sum_probs=26.4
Q ss_pred CCcceEEEeecCCCCcccHHHHHHhh--cCceeEEecCC
Q 045170 26 SNEILNVTYFGCSSNPSTFSVVSSVI--ENEFPFYLNDL 62 (135)
Q Consensus 26 ~~~~~~IaDlGCS~G~NSl~~i~~iI--~peiqv~~nDL 62 (135)
..++.+|.|+||..|.-|..+..-+= .+..+|+--|.
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~ 61 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDC 61 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEEC
Confidence 46689999999999999987766211 25566665554
No 121
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=44.69 E-value=16 Score=27.86 Aligned_cols=83 Identities=12% Similarity=-0.044 Sum_probs=42.6
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhc---cCCCEEEE--ecCCcccccccC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERY---KDLSLFTV--GAPGSFHGWLFP 101 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~---~~~~~f~~--~vpgSFY~rLfP 101 (135)
.+..+|.++||..|--++.+... ...-.|+++|++. +...+....+.. .+.++-+. -.+.......+.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~--~~~~~Vv~TD~~~-----~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL--FGAARVVLTDYNE-----VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S------HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS
T ss_pred cCCceEEEECCccchhHHHHHhc--cCCceEEEeccch-----hhHHHHHHHHhccccccccccCcEEEecCcccccccc
Confidence 34679999999999888776655 2456799999865 334343332221 12333333 233333344556
Q ss_pred CCceeeEecchhhhc
Q 045170 102 TNSLHLVHSSYGAHW 116 (135)
Q Consensus 102 ~~Svh~~~Ss~alHW 116 (135)
.+..|+++.+=.+..
T Consensus 117 ~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 117 PHSFDVILASDVLYD 131 (173)
T ss_dssp -SSBSEEEEES--S-
T ss_pred cccCCEEEEecccch
Confidence 678888887766654
No 122
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=43.32 E-value=16 Score=29.54 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=18.8
Q ss_pred cceEEEeecCCCCcccHHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
+.-+|.|+||..|.-|..+...
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh
Confidence 3468999999999999988875
No 123
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=43.15 E-value=14 Score=27.59 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=19.4
Q ss_pred ccCCCceeeEe-------cc-hhhhccccCCccc
Q 045170 99 LFPTNSLHLVH-------SS-YGAHWLSKMRLPI 124 (135)
Q Consensus 99 LfP~~Svh~~~-------Ss-~alHWLS~~P~~l 124 (135)
+.|.++|-|.+ |. +.++|+.|+|.++
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~l 43 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGADSAV 43 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCCCCc
Confidence 45677776655 44 8999999999854
No 124
>PHA03412 putative methyltransferase; Provisional
Probab=42.30 E-value=15 Score=30.56 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=17.9
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|+|+||.+|.-++.+..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~ 70 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHM 70 (241)
T ss_pred CCEEEEccChHHHHHHHHHHh
Confidence 469999999999999877664
No 125
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=42.28 E-value=18 Score=28.92 Aligned_cols=23 Identities=17% Similarity=-0.051 Sum_probs=18.8
Q ss_pred cceEEEeecCCCCcccHHHHHHh
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
+.-+|.|+||..|.-|..+....
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~ 51 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA 51 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC
Confidence 45689999999999998877643
No 126
>PF05868 Rotavirus_VP7: Rotavirus major outer capsid protein VP7; InterPro: IPR008818 This family consists of several Rotavirus major outer capsid protein VP7 sequences. The rotavirus capsid is composed of three concentric protein layers. Proteins VP4 and VP7 comprise the outer layer. VP4 forms spikes and is the viral attachment protein. VP7 is a glycoprotein and the major constituent of the outer protein layer [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=41.92 E-value=8.1 Score=32.49 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=24.4
Q ss_pred hcCceeEEecCCCCCchHHHhhcchhhhhhc
Q 045170 51 IENEFPFYLNDLLGNDFNMLFQGLSSFAERY 81 (135)
Q Consensus 51 I~peiqv~~nDLP~NDFntLF~~l~~~~~~~ 81 (135)
++|||.+.+.|-.++||+..+.++.+.-+++
T Consensus 23 ~~peiCilY~~d~~~~~~~~~~nft~ife~y 53 (249)
T PF05868_consen 23 TSPEICILYADDFGTDANQFNGNFTNIFESY 53 (249)
T ss_pred CCCcEEEEEcCcchhhHHHhcccHHHHHHhc
Confidence 3489999999999999888887777664433
No 127
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=41.53 E-value=13 Score=30.83 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=21.8
Q ss_pred EEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 31 NVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
+|.|+||.||.-++.+..+.-+ ..|+-.|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Di 142 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDI 142 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEEC
Confidence 8999999999988887766542 34444443
No 128
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=41.28 E-value=13 Score=32.40 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=23.1
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|.|+||++|.-|+.+.... +...|+-.|.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~--~~~~v~a~D~ 276 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA--PQAQVVALDI 276 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc--CCCEEEEEeC
Confidence 4589999999999998777644 2245555554
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=41.01 E-value=18 Score=30.82 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=17.8
Q ss_pred cceEEEeecCCCCcccHHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~ 48 (135)
+.-+|.|+||.+|.+++.+..
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHH
Confidence 456899999999999987765
No 130
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=39.95 E-value=15 Score=32.12 Aligned_cols=33 Identities=6% Similarity=-0.082 Sum_probs=22.0
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|.|+||+.|.-|+.+... +.+.-+|+-.|.
T Consensus 253 g~~VLDl~ag~G~kt~~la~~-~~~~g~v~a~D~ 285 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAEL-MGDQGEIWAVDR 285 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHH-hCCCceEEEEcC
Confidence 468999999999999876653 222234444443
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=38.37 E-value=22 Score=31.10 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=18.2
Q ss_pred ceEEEeecCCCCcccHHHHHHh
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~i 50 (135)
.-+|.|+||.+|..++.+....
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~ 319 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA 319 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC
Confidence 4689999999999998876543
No 132
>PLN03075 nicotianamine synthase; Provisional
Probab=38.35 E-value=37 Score=28.96 Aligned_cols=94 Identities=13% Similarity=0.068 Sum_probs=45.8
Q ss_pred cceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEecCCcccccccC-CCcee
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVGAPGSFHGWLFP-TNSLH 106 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~vpgSFY~rLfP-~~Svh 106 (135)
.+=+|+|+||..|+-|...+..-.-|.-++.--|.-. |-+.+-+.+-.-....++.=-|..+=... +.+ .+..|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~-~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~----~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP-SANDVARRLVSSDPDLSKRMFFHTADVMD----VTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH-HHHHHHHHHhhhccCccCCcEEEECchhh----cccccCCcC
Confidence 5678999999999877666554444444444444321 11222222211001111112333321111 222 35789
Q ss_pred eEecchhhhccc-cCCcccccc
Q 045170 107 LVHSSYGAHWLS-KMRLPILKY 127 (135)
Q Consensus 107 ~~~Ss~alHWLS-~~P~~l~d~ 127 (135)
++++. ++|-.. .-+..+.++
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~ 218 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEH 218 (296)
T ss_pred EEEEe-cccccccccHHHHHHH
Confidence 99999 666554 444444443
No 133
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=37.25 E-value=34 Score=28.45 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=31.2
Q ss_pred hhhhhhhcccccccc---CCCCcceEEEeecCCCCcccHHHHHHh
Q 045170 9 QYWRVQFNLDLLGEE---GISNEILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 9 q~~~~~~~l~ll~~~---~~~~~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
|-.+--+|.+|++.. .++...-+|.|.|||.|.=|..+++..
T Consensus 47 ~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 47 QNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred hhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhh
Confidence 334455778888653 245557899999999999998888766
No 134
>PHA03411 putative methyltransferase; Provisional
Probab=37.14 E-value=22 Score=30.24 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=15.7
Q ss_pred eEEEeecCCCCcccHHHHH
Q 045170 30 LNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~ 48 (135)
-+|+|+||.+|..++.+..
T Consensus 66 grVLDLGcGsGilsl~la~ 84 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLH 84 (279)
T ss_pred CeEEEcCCCCCHHHHHHHH
Confidence 4899999999987776654
No 135
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=36.77 E-value=19 Score=25.44 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=15.5
Q ss_pred EEEeecCCCCcccHHHHHH
Q 045170 31 NVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~ 49 (135)
+|.|+||..|.-++.+...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~ 19 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK 19 (143)
T ss_pred CEEEccCCccHHHHHHHHh
Confidence 4899999999988876553
No 136
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=36.69 E-value=35 Score=27.50 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=17.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVV 47 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i 47 (135)
--++.|+||.+|.-|+..+
T Consensus 35 g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCEEEEeCCCccHHHHHHH
Confidence 3489999999999999887
No 137
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=36.05 E-value=21 Score=32.03 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=21.3
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
-+|.|+||.+|..++.+.... |..+|+--|.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~--p~a~VtAVDi 283 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER--PDAFVRASDI 283 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC--CCCEEEEEEC
Confidence 489999999999988765432 3344444444
No 138
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=35.99 E-value=27 Score=30.55 Aligned_cols=20 Identities=5% Similarity=-0.122 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~ 48 (135)
.-+|.|+||++|..|+.+..
T Consensus 251 g~~VLDlgaG~G~kt~~la~ 270 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAE 270 (445)
T ss_pred CCEEEEECCCCCHHHHHHHH
Confidence 35799999999999986654
No 139
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=35.70 E-value=25 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=20.6
Q ss_pred CcccccccCCCceeeEecchhhhcccc
Q 045170 93 GSFHGWLFPTNSLHLVHSSYGAHWLSK 119 (135)
Q Consensus 93 gSFY~rLfP~~Svh~~~Ss~alHWLS~ 119 (135)
|...+=-+++++.|++++.+++||+..
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCC
Confidence 344333478889999999999999754
No 140
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=34.76 E-value=28 Score=27.05 Aligned_cols=21 Identities=10% Similarity=-0.214 Sum_probs=18.4
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-++.|++|.+|.-++.+++.
T Consensus 50 g~~vLDLfaGsG~lglea~sr 70 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSR 70 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhC
Confidence 357999999999999999884
No 141
>smart00400 ZnF_CHCC zinc finger.
Probab=33.72 E-value=36 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.5
Q ss_pred ceEEEeecCCCCcccHHHHHHhh
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVI 51 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI 51 (135)
.=..=++||..|++.|.++.++-
T Consensus 21 kn~~~Cf~cg~gGd~i~fv~~~~ 43 (55)
T smart00400 21 KQFFHCFGCGAGGNVISFLMKYD 43 (55)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH
Confidence 34467899999999999888764
No 142
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=33.58 E-value=26 Score=28.04 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=14.9
Q ss_pred EEeecCCCCcccHHHHHH
Q 045170 32 VTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 32 IaDlGCS~G~NSl~~i~~ 49 (135)
|||.||=||.-.+.++.+
T Consensus 1 vaDIGtDHgyLpi~L~~~ 18 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN 18 (205)
T ss_dssp EEEET-STTHHHHHHHHT
T ss_pred CceeccchhHHHHHHHhc
Confidence 799999999999988774
No 143
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=31.95 E-value=27 Score=30.00 Aligned_cols=20 Identities=5% Similarity=0.003 Sum_probs=17.4
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 045170 30 LNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~ 49 (135)
-+|+|+||.+|..++.+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred CEEEEccCCccHHHHHHhhc
Confidence 47999999999999988764
No 144
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=31.57 E-value=29 Score=30.99 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=17.4
Q ss_pred cceEEEeecCCCCcccHHHHHHh
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
+..+|.|.||..|+-+...++..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTT
T ss_pred cceEEEEeCCCccHHHHHHHHHH
Confidence 46899999999999988777654
No 145
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=31.22 E-value=21 Score=29.02 Aligned_cols=21 Identities=10% Similarity=-0.016 Sum_probs=17.3
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|.|+||+.|.-|+.+...
T Consensus 72 g~~VLDl~ag~G~kt~~la~~ 92 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISAL 92 (264)
T ss_pred cCEEEEECCCchHHHHHHHHH
Confidence 468999999999999876553
No 146
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.19 E-value=54 Score=27.02 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=19.8
Q ss_pred ceEEEeecCCCCcccHHHHHHhh
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVI 51 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI 51 (135)
+-..+++||+||--|-.+.+.+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC
Confidence 67789999999998888877776
No 147
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=30.93 E-value=23 Score=30.88 Aligned_cols=33 Identities=12% Similarity=-0.073 Sum_probs=22.7
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|.|+||++|.-|+.+.... .+.-+|+-.|+
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~-~~~~~v~avDi 283 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL-KNTGKVVALDI 283 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh-CCCCEEEEEeC
Confidence 3589999999999998776643 22334444454
No 148
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=30.77 E-value=32 Score=27.49 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=15.0
Q ss_pred CcceEEEeecCCCCcccHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVV 47 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i 47 (135)
..-.+|.|+||.+|.+|-.+-
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHH
Confidence 345799999999999987644
No 149
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=29.87 E-value=44 Score=27.29 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=36.8
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccC-CCE--EEEecCCcccccccCCC
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKD-LSL--FTVGAPGSFHGWLFPTN 103 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~-~~~--f~~~vpgSFY~rLfP~~ 103 (135)
+.--++.|+|||.|..|..+...- + .+.--| .+. ..+..-.+...+ +++ -...+|. ..|.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC-d---~LlavD-----is~--~Al~~Ar~Rl~~~~~V~~~~~dvp~-----~~P~~ 105 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC-D---RLLAVD-----ISP--RALARARERLAGLPHVEWIQADVPE-----FWPEG 105 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE-E---EEEEEE-----S-H--HHHHHHHHHTTT-SSEEEEES-TTT--------SS
T ss_pred cccceeEecCCCccHHHHHHHHhh-C---ceEEEe-----CCH--HHHHHHHHhcCCCCCeEEEECcCCC-----CCCCC
Confidence 445679999999999998765321 1 111111 111 111111222222 232 2334444 35888
Q ss_pred ceeeEecchhhhcccc
Q 045170 104 SLHLVHSSYGAHWLSK 119 (135)
Q Consensus 104 Svh~~~Ss~alHWLS~ 119 (135)
..|+++-+--+++|+.
T Consensus 106 ~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDD 121 (201)
T ss_dssp -EEEEEEES-GGGSSS
T ss_pred CeeEEEEehHhHcCCC
Confidence 8999998888888875
No 150
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=29.54 E-value=40 Score=29.77 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.3
Q ss_pred CcceEEEeecCCCCcccHHHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
..-.++.|+|||.|+-|-.+++.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc
Confidence 45679999999999999877764
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=29.51 E-value=35 Score=27.30 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=18.9
Q ss_pred CcceEEEeecCCCCcccHHHHHHh
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
.++-+|.|+||+.|.-++.+...+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~ 90 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALAL 90 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhC
Confidence 346689999999999988766543
No 152
>PRK04148 hypothetical protein; Provisional
Probab=29.42 E-value=66 Score=24.42 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=28.4
Q ss_pred cceEEEeecCCCCcccHHHHHHh------hc--C---------ceeEEecCCCCCchH
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSV------IE--N---------EFPFYLNDLLGNDFN 68 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~i------I~--p---------eiqv~~nDLP~NDFn 68 (135)
+..+|+|+||..|.+-...+.+. || | -++++..|+-..|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH
Confidence 45789999999997444344332 22 2 268999999888875
No 153
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=28.87 E-value=33 Score=28.87 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=13.8
Q ss_pred ceEEEeecCCCCcccHH
Q 045170 29 ILNVTYFGCSSNPSTFS 45 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~ 45 (135)
.+.+||+||.-|+-.+.
T Consensus 61 kvefaDIGCGyGGLlv~ 77 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMK 77 (249)
T ss_pred cceEEeeccCccchhhh
Confidence 47899999999976553
No 154
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=28.17 E-value=1.5e+02 Score=25.62 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=57.0
Q ss_pred CcceEEEeecCCCCcccHHHHHHhhc----CceeEEecCCCCCchHHHhhcchhhhh---hccCCCEEEEecCCcccccc
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSVIE----NEFPFYLNDLLGNDFNMLFQGLSSFAE---RYKDLSLFTVGAPGSFHGWL 99 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~iI~----peiqv~~nDLP~NDFntLF~~l~~~~~---~~~~~~~f~~~vpgSFY~rL 99 (135)
.+.+++.|.+|.+|-.++.++..+=. .+-+|...|. |.=-..+-.-.+ +++..+.+.- +.|.-=.==
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di-----np~mL~vgkqRa~~~~l~~~~~~~w-~~~dAE~Lp 172 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI-----NPHMLAVGKQRAKKRPLKASSRVEW-VEGDAEDLP 172 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC-----CHHHHHHHHHHHhhcCCCcCCceEE-EeCCcccCC
Confidence 35699999999999999999887755 3456666664 432222222112 2333322221 122332223
Q ss_pred cCCCceeeEecchhhhccccCCccc
Q 045170 100 FPTNSLHLVHSSYGAHWLSKMRLPI 124 (135)
Q Consensus 100 fP~~Svh~~~Ss~alHWLS~~P~~l 124 (135)
||++|.|....++.+.-...+++.+
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l 197 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKAL 197 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHH
Confidence 9999999999999987766665554
No 155
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=27.78 E-value=39 Score=29.20 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=17.8
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|.|+||.+|..++.+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~ 313 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQ 313 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHh
Confidence 468999999999999987653
No 156
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=27.48 E-value=32 Score=29.49 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=12.0
Q ss_pred eEEEeecCCCCcccH
Q 045170 30 LNVTYFGCSSNPSTF 44 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl 44 (135)
-++.|+||.+|-.-.
T Consensus 127 ~~~lDLGCGTGL~G~ 141 (287)
T COG4976 127 RRMLDLGCGTGLTGE 141 (287)
T ss_pred ceeeecccCcCcccH
Confidence 359999999997554
No 157
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=27.00 E-value=32 Score=25.76 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=15.9
Q ss_pred CcceEEEeecCCCCcccHHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~ 48 (135)
.+....+|+||..|--.-.+.+
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~ 78 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS 78 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh
Confidence 3577899999998865544444
No 158
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=25.11 E-value=41 Score=26.26 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.2
Q ss_pred EEEeecCCCCcccHHHHHH
Q 045170 31 NVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~ 49 (135)
+|.|.-|..|+||+.+...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~ 20 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART 20 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHh
Confidence 5899999999999998875
No 159
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.88 E-value=49 Score=26.92 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=21.3
Q ss_pred CCCcceEEEeecCCCCcccHHHHHHh
Q 045170 25 ISNEILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 25 ~~~~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
++.+-.+|.|||+|-|.=|-.+...+
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~ 67 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKL 67 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHh
Confidence 55668999999999999888776644
No 160
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=24.59 E-value=75 Score=28.27 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=20.0
Q ss_pred cceEEEeecCCCCcccHHHHHHh
Q 045170 28 EILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
+..+|+|.||.+|.-.+.++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~ 53 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKN 53 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHH
Confidence 57899999999999988877765
No 161
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=24.52 E-value=66 Score=25.45 Aligned_cols=37 Identities=16% Similarity=0.366 Sum_probs=23.2
Q ss_pred CcceEEEeecCCCCc--ccH-HHHHHhhc---C-ceeEEecCCC
Q 045170 27 NEILNVTYFGCSSNP--STF-SVVSSVIE---N-EFPFYLNDLL 63 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~--NSl-~~i~~iI~---p-eiqv~~nDLP 63 (135)
.++++|-..|||+|- =|+ .++.+... + .++|+=.|+.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~ 73 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDIS 73 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECC
Confidence 378999999999997 344 23334333 3 6999999874
No 162
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=24.03 E-value=45 Score=27.97 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=17.8
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 045170 29 ILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.-+|.|+||..|.-|..++..
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~ 57 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL 57 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh
Confidence 458999999999999877764
No 163
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=23.35 E-value=60 Score=26.34 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=17.0
Q ss_pred CcceEEEeecCCCCcccHHHHH
Q 045170 27 NEILNVTYFGCSSNPSTFSVVS 48 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~ 48 (135)
+++-+|.++||.+|..+..+++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~ 92 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLK 92 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHh
Confidence 4555999999999987765544
No 164
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=23.08 E-value=2.6e+02 Score=22.69 Aligned_cols=87 Identities=9% Similarity=-0.082 Sum_probs=55.2
Q ss_pred EEEeecCCCCcccHHHHHHhhcCceeEEecCCCCCchHHHhhcchhhhhhccCCCEEEEe-cCCcccc--cccCCCceee
Q 045170 31 NVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGNDFNMLFQGLSSFAERYKDLSLFTVG-APGSFHG--WLFPTNSLHL 107 (135)
Q Consensus 31 ~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~f~~~-vpgSFY~--rLfP~~Svh~ 107 (135)
+|.++||.+|--+..+...+ |.++.-=+|+..+-+.++-.-+....-+...+++.+=+ -+..=.. --+..+++|.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l--P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL--PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC--CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 69999999999988876644 67888889999988877665443321111113333211 1101001 0126779999
Q ss_pred Eecchhhhcccc
Q 045170 108 VHSSYGAHWLSK 119 (135)
Q Consensus 108 ~~Ss~alHWLS~ 119 (135)
+++.+.+|-.+.
T Consensus 106 i~~~N~lHI~p~ 117 (204)
T PF06080_consen 106 IFCINMLHISPW 117 (204)
T ss_pred eeehhHHHhcCH
Confidence 999999997653
No 165
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=22.93 E-value=51 Score=28.98 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=22.1
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecCC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDL 62 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDL 62 (135)
.-+|.|+||+.|.-|+.+... +.+.-+|+-.|+
T Consensus 238 g~~VLD~cagpGgkt~~la~~-~~~~g~V~a~Di 270 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAEL-MKDQGKILAVDI 270 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHH-cCCCCEEEEEEC
Confidence 358999999999998876543 333344454454
No 166
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=22.66 E-value=1e+02 Score=25.14 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=23.8
Q ss_pred ceEEEeecCCCCcccHHHHHHhhcCceeEEecC
Q 045170 29 ILNVTYFGCSSNPSTFSVVSSVIENEFPFYLND 61 (135)
Q Consensus 29 ~~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nD 61 (135)
..+++|+|+.-|--.+.+. |+.|+.+|.+=|
T Consensus 68 ~~~~~DIGSGaGfPGipLA--I~~p~~~vtLle 98 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA--IAFPDLKVTLLE 98 (215)
T ss_pred CCEEEEeCCCCCCchhhHH--HhccCCcEEEEc
Confidence 5799999999998888665 666776666555
No 167
>PRK00811 spermidine synthase; Provisional
Probab=22.06 E-value=60 Score=26.75 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=19.6
Q ss_pred CCcceEEEeecCCCCcccHHHHHH
Q 045170 26 SNEILNVTYFGCSSNPSTFSVVSS 49 (135)
Q Consensus 26 ~~~~~~IaDlGCS~G~NSl~~i~~ 49 (135)
.+++-+|.|+||..|..+..+++.
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHHcC
Confidence 356779999999999988877663
No 168
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=21.32 E-value=60 Score=27.26 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=14.9
Q ss_pred cceEEEeecCCCCcccHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVV 47 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i 47 (135)
.-.+|.|.||.-|--|..+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mA 78 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLA 78 (243)
T ss_pred CCCeEEEecCCccHhhHHHH
Confidence 35789999999995555443
No 169
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=21.08 E-value=51 Score=24.02 Aligned_cols=14 Identities=43% Similarity=0.524 Sum_probs=7.6
Q ss_pred CCEEEEecCCcccc
Q 045170 84 LSLFTVGAPGSFHG 97 (135)
Q Consensus 84 ~~~f~~~vpgSFY~ 97 (135)
+=+++.|.||||++
T Consensus 94 PLll~HGWPgSf~E 107 (112)
T PF06441_consen 94 PLLLLHGWPGSFLE 107 (112)
T ss_dssp EEEEE--SS--GGG
T ss_pred EEEEECCCCccHHh
Confidence 33778899999986
No 170
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=20.91 E-value=64 Score=25.67 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=19.5
Q ss_pred CcceEEEeecCCCCcccHHHHHHh
Q 045170 27 NEILNVTYFGCSSNPSTFSVVSSV 50 (135)
Q Consensus 27 ~~~~~IaDlGCS~G~NSl~~i~~i 50 (135)
.++-+|.++||+.|..|+.+...+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l 67 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEAL 67 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTS
T ss_pred cCCceEEEeccccccHHHHHHHhh
Confidence 356699999999999999888654
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=20.84 E-value=68 Score=27.53 Aligned_cols=20 Identities=15% Similarity=-0.021 Sum_probs=14.9
Q ss_pred cceEEEeecCCCCcccHHHH
Q 045170 28 EILNVTYFGCSSNPSTFSVV 47 (135)
Q Consensus 28 ~~~~IaDlGCS~G~NSl~~i 47 (135)
+..+|.|+||.+|.-...+.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa 133 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG 133 (321)
T ss_pred CCceEEEecCCccHHHHHHH
Confidence 56899999999985544443
No 172
>PLN02672 methionine S-methyltransferase
Probab=20.66 E-value=49 Score=33.16 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=23.9
Q ss_pred eEEEeecCCCCcccHHHHHHhhcCceeEEecCCCCC
Q 045170 30 LNVTYFGCSSNPSTFSVVSSVIENEFPFYLNDLLGN 65 (135)
Q Consensus 30 ~~IaDlGCS~G~NSl~~i~~iI~peiqv~~nDLP~N 65 (135)
.+|+|+||.+|.-++.+..+. |..+|+--|....
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~--~~~~v~avDis~~ 153 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW--LPSKVYGLDINPR 153 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC--CCCEEEEEECCHH
Confidence 489999999999999877653 2235555555433
No 173
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=20.50 E-value=87 Score=22.40 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=21.0
Q ss_pred hHHHhhcchhhhhhccCCCEEEEecCCccccc
Q 045170 67 FNMLFQGLSSFAERYKDLSLFTVGAPGSFHGW 98 (135)
Q Consensus 67 FntLF~~l~~~~~~~~~~~~f~~~vpgSFY~r 98 (135)
-|.||+.|.+..... -.++++.|-||-|+++
T Consensus 8 HsAifQ~L~~~~~~~-v~~i~lTASGGpFr~~ 38 (84)
T PF08436_consen 8 HSAIFQCLQGEKREE-VEKIILTASGGPFRDK 38 (84)
T ss_dssp HHHHHHHSGHHHHCT-EEEEEEEE--STTTTS
T ss_pred HHHHHHHCCCCCccc-cCEEEEECcchhhCCC
Confidence 478999998753211 1579999999999875
No 174
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=20.43 E-value=65 Score=27.58 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=14.8
Q ss_pred ccCCC--ceeeEecchhhhcccc
Q 045170 99 LFPTN--SLHLVHSSYGAHWLSK 119 (135)
Q Consensus 99 LfP~~--Svh~~~Ss~alHWLS~ 119 (135)
.++++ ..|++-+-+|||..-+
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fe 160 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFE 160 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGS
T ss_pred hccccCCCcceeehHHHHHHhcC
Confidence 45554 9999999999998754
Done!