BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045172
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92J08|FER2_RICCN 2Fe-2S ferredoxin OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=fdxB PE=3 SV=1
Length = 112
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 80 LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129
L KP +A+ + + + D R GC ++++++ D ++V AT R +K+
Sbjct: 63 LKKPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVRIPATTRNIKL 112
>sp|Q9AKH1|FER2_RICRI 2Fe-2S ferredoxin OS=Rickettsia rickettsii GN=fdxB PE=3 SV=1
Length = 112
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 80 LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129
L KP +A+ + + + D R GC ++++++ D ++V A R +K+
Sbjct: 63 LKKPTEAEEDMLDLAFGLTDTSRLGCQIILTEELDGIKVHLPAATRNIKL 112
>sp|O22436|CHLI_TOBAC Magnesium-chelatase subunit ChlI, chloroplastic OS=Nicotiana
tabacum GN=CHLI PE=2 SV=1
Length = 426
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 1 RFYNNDKLVNHFRQIHEGEQKKRSNQIESARGKVRVLLVGNYSIKMEKNKMAA 53
RF N K FR+ ++ EQ+K NQI+SAR + + + ++ ++++ +K+ A
Sbjct: 309 RFDKNPK---EFRESYKAEQEKLQNQIDSARNALSAVTI-DHDLRVKISKVCA 357
>sp|Q1DDB7|PYRG_MYXXD CTP synthase OS=Myxococcus xanthus (strain DK 1622) GN=pyrG PE=3
SV=1
Length = 546
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 28 ESARGKVRVLLVGNYSIKMEKNKMAASAILTPKVGYGFADELKRAWFWVRMVLVKPQDAD 87
E ARG+VR+ +VG Y E K A+L G A+++K +V V+ Q A+
Sbjct: 288 EPARGQVRIAIVGKYVNLTESYKSLNEALLHG----GIANDVKVNLHFVDSQEVEEQGAE 343
Query: 88 VLL 90
LL
Sbjct: 344 KLL 346
>sp|B9KKB0|PYRG_RHOSK CTP synthase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
GN=pyrG PE=3 SV=1
Length = 547
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 25 NQIESARGKVRVLLVGNYSIKMEKNKMAASAILTPKVGYGFADELKRAWFWVRMVLVKPQ 84
+++E+A G+VRV +VG Y+ + K A A+ G A+ + W+ L + +
Sbjct: 281 DRLENAEGEVRVAIVGKYTQLEDAYKSIAEALTHG----GMANRTRVRAEWINAELFERE 336
Query: 85 DADVLLRNYMVAMV 98
D L + +V
Sbjct: 337 DPSPFLEGFHAILV 350
>sp|Q3J0Z1|PYRG_RHOS4 CTP synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1
/ NCIB 8253 / DSM 158) GN=pyrG PE=3 SV=1
Length = 547
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 25 NQIESARGKVRVLLVGNYSIKMEKNKMAASAILTPKVGYGFADELKRAWFWVRMVLVKPQ 84
+++E+A G+VRV +VG Y+ + K A A+ G A+ + W+ L + +
Sbjct: 281 DRLENAEGEVRVAIVGKYTQLEDAYKSIAEALTHG----GMANRTRVRAEWINAELFERE 336
Query: 85 DADVLLRNYMVAMV 98
D L + +V
Sbjct: 337 DPSPFLEGFHAILV 350
>sp|A3PLA0|PYRG_RHOS1 CTP synthase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=pyrG PE=3 SV=1
Length = 547
Score = 29.6 bits (65), Expect = 8.0, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 25 NQIESARGKVRVLLVGNYSIKMEKNKMAASAILTPKVGYGFADELKRAWFWVRMVLVKPQ 84
+++E+A G+VRV +VG Y+ + K A A+ G A+ + W+ L + +
Sbjct: 281 DRLENAEGEVRVAIVGKYTQLEDAYKSIAEALTHG----GMANRTRVRAEWINAELFERE 336
Query: 85 DADVLLRNYMVAMV 98
D L + +V
Sbjct: 337 DPSPFLEGFHAILV 350
>sp|Q5RC46|CECR1_PONAB Adenosine deaminase CECR1 OS=Pongo abelii GN=CECR1 PE=2 SV=1
Length = 511
Score = 29.3 bits (64), Expect = 9.9, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 26/128 (20%)
Query: 46 MEKNKMAASAILTPKVGYGFA---DELKRAWFWVRMVLVK--PQDADVL-----LRNYMV 95
+++N + A + T ++G+GFA RA+ W + + ++ P VL LRN+ V
Sbjct: 367 IDRNILDALMLNTTRIGHGFALSKHPAVRAYSWKKDIPIEVCPISNQVLKLVSDLRNHPV 426
Query: 96 AMVDKRRFGCLVVVSDDS----------DFVEVF-----QEATLRWLKMVVVGDMSDGAL 140
A + +V+ SDD DF EVF +A LR LK + + + AL
Sbjct: 427 ATLMATGHP-MVISSDDPAIFGAKGLSYDFYEVFMGIGGMKADLRTLKQLAMNSIKYSAL 485
Query: 141 KRIANAFF 148
I F
Sbjct: 486 LEIEKNTF 493
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,398,736
Number of Sequences: 539616
Number of extensions: 1952239
Number of successful extensions: 6259
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6256
Number of HSP's gapped (non-prelim): 9
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)