Query 045172
Match_columns 157
No_of_seqs 32 out of 34
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06167 LabA_like LabA_like pr 99.5 1.3E-13 2.8E-18 102.7 9.2 87 63-149 55-148 (149)
2 TIGR00288 conserved hypothetic 99.5 1.1E-13 2.3E-18 111.0 8.2 86 64-152 70-157 (160)
3 PF01936 NYN: NYN domain; Int 99.4 6.4E-13 1.4E-17 97.1 8.2 86 65-150 52-145 (146)
4 COG1432 Uncharacterized conser 98.4 9.6E-07 2.1E-11 70.8 8.3 88 65-152 65-162 (181)
5 cd01545 PBP1_SalR Ligand-bindi 96.2 0.019 4.1E-07 44.6 6.8 71 63-135 19-89 (270)
6 cd05013 SIS_RpiR RpiR-like pro 96.2 0.035 7.6E-07 39.3 7.6 77 65-149 31-110 (139)
7 cd06305 PBP1_methylthioribose_ 96.0 0.043 9.2E-07 42.8 7.7 70 63-135 19-89 (273)
8 cd01542 PBP1_TreR_like Ligand- 95.7 0.068 1.5E-06 41.4 7.6 69 63-135 19-87 (259)
9 cd05014 SIS_Kpsf KpsF-like pro 95.6 0.022 4.8E-07 41.0 4.5 78 65-150 18-98 (128)
10 cd06295 PBP1_CelR Ligand bindi 95.6 0.062 1.3E-06 42.2 7.3 66 64-135 31-96 (275)
11 TIGR02634 xylF D-xylose ABC tr 95.6 0.071 1.5E-06 43.8 7.9 69 64-135 19-88 (302)
12 cd06312 PBP1_ABC_sugar_binding 95.6 0.073 1.6E-06 42.0 7.6 71 63-135 20-91 (271)
13 PF13407 Peripla_BP_4: Peripla 95.4 0.093 2E-06 41.0 7.5 70 63-135 18-89 (257)
14 cd06318 PBP1_ABC_sugar_binding 95.3 0.11 2.5E-06 40.8 7.8 70 63-135 19-89 (282)
15 cd06324 PBP1_ABC_sugar_binding 95.3 0.085 1.9E-06 43.1 7.2 70 63-135 20-91 (305)
16 PRK15482 transcriptional regul 95.1 0.095 2.1E-06 43.6 7.2 95 46-148 122-231 (285)
17 cd06303 PBP1_LuxPQ_Quorum_Sens 95.1 0.086 1.9E-06 42.2 6.7 72 63-135 20-93 (280)
18 cd06270 PBP1_GalS_like Ligand 95.0 0.13 2.9E-06 40.2 7.5 69 63-135 19-87 (268)
19 cd06282 PBP1_GntR_like_2 Ligan 95.0 0.15 3.2E-06 39.4 7.5 70 63-135 19-88 (266)
20 PRK15408 autoinducer 2-binding 94.9 0.11 2.3E-06 44.6 7.3 71 63-135 43-114 (336)
21 cd06281 PBP1_LacI_like_5 Ligan 94.9 0.16 3.4E-06 39.9 7.6 71 63-136 19-89 (269)
22 cd06306 PBP1_TorT-like TorT-li 94.9 0.15 3.3E-06 40.5 7.6 72 63-135 19-90 (268)
23 cd06316 PBP1_ABC_sugar_binding 94.8 0.12 2.7E-06 41.4 6.9 71 63-135 19-90 (294)
24 cd06302 PBP1_LsrB_Quorum_Sensi 94.7 0.18 3.9E-06 41.0 7.8 70 63-135 19-90 (298)
25 cd06294 PBP1_ycjW_transcriptio 94.7 0.17 3.7E-06 39.3 7.3 69 63-135 24-92 (270)
26 PF01380 SIS: SIS domain SIS d 94.7 0.074 1.6E-06 37.9 4.9 47 102-148 53-102 (131)
27 cd06313 PBP1_ABC_sugar_binding 94.7 0.16 3.5E-06 40.5 7.2 70 63-135 19-89 (272)
28 cd01539 PBP1_GGBP Periplasmic 94.6 0.2 4.4E-06 41.0 7.9 70 63-135 19-91 (303)
29 cd01540 PBP1_arabinose_binding 94.6 0.18 3.8E-06 40.0 7.2 69 63-135 19-88 (289)
30 cd06299 PBP1_LacI_like_13 Liga 94.6 0.17 3.8E-06 39.3 7.0 69 63-135 19-87 (265)
31 PRK10653 D-ribose transporter 94.5 0.18 3.9E-06 40.8 7.2 70 63-135 46-116 (295)
32 PF00532 Peripla_BP_1: Peripla 94.5 0.17 3.8E-06 41.9 7.3 68 63-135 21-88 (279)
33 cd01541 PBP1_AraR Ligand-bindi 94.5 0.23 5.1E-06 38.9 7.6 70 63-135 19-92 (273)
34 cd06322 PBP1_ABC_sugar_binding 94.5 0.23 5E-06 38.7 7.5 71 62-135 18-89 (267)
35 cd06314 PBP1_tmGBP Periplasmic 94.5 0.17 3.6E-06 40.0 6.7 73 60-135 15-88 (271)
36 cd06320 PBP1_allose_binding Pe 94.4 0.17 3.6E-06 39.8 6.7 73 62-135 18-91 (275)
37 cd01538 PBP1_ABC_xylose_bindin 94.4 0.25 5.5E-06 39.8 7.8 70 63-135 19-89 (288)
38 TIGR02637 RhaS rhamnose ABC tr 94.4 0.17 3.8E-06 40.9 6.9 71 63-135 18-90 (302)
39 cd06289 PBP1_MalI_like Ligand- 94.3 0.3 6.4E-06 37.8 7.7 70 63-135 19-88 (268)
40 cd06323 PBP1_ribose_binding Pe 94.2 0.29 6.4E-06 37.8 7.5 70 63-135 19-89 (268)
41 PRK10014 DNA-binding transcrip 94.2 0.28 6E-06 40.2 7.7 70 63-135 84-153 (342)
42 cd05008 SIS_GlmS_GlmD_1 SIS (S 94.2 0.11 2.4E-06 37.3 4.8 75 65-148 17-95 (126)
43 cd06310 PBP1_ABC_sugar_binding 94.1 0.26 5.6E-06 38.6 7.2 72 63-135 19-91 (273)
44 cd06317 PBP1_ABC_sugar_binding 94.1 0.33 7.2E-06 37.8 7.7 70 63-135 20-90 (275)
45 cd06308 PBP1_sensor_kinase_lik 94.0 0.34 7.4E-06 38.1 7.6 70 63-135 19-90 (270)
46 cd06273 PBP1_GntR_like_1 This 94.0 0.36 7.9E-06 37.5 7.7 69 63-135 19-87 (268)
47 cd06315 PBP1_ABC_sugar_binding 93.9 0.27 6E-06 39.4 7.1 70 63-135 20-90 (280)
48 cd06285 PBP1_LacI_like_7 Ligan 93.9 0.35 7.6E-06 37.8 7.5 69 63-135 19-87 (265)
49 cd06292 PBP1_LacI_like_10 Liga 93.9 0.34 7.5E-06 37.9 7.5 70 63-135 19-92 (273)
50 cd06301 PBP1_rhizopine_binding 93.8 0.47 1E-05 37.1 8.0 70 63-135 19-90 (272)
51 cd06296 PBP1_CatR_like Ligand- 93.8 0.32 6.9E-06 37.9 7.0 69 63-135 19-87 (270)
52 cd06321 PBP1_ABC_sugar_binding 93.8 0.41 8.8E-06 37.6 7.7 71 63-136 19-92 (271)
53 cd06311 PBP1_ABC_sugar_binding 93.7 0.54 1.2E-05 37.0 8.3 70 63-135 19-94 (274)
54 cd01575 PBP1_GntR Ligand-bindi 93.6 0.44 9.4E-06 36.8 7.5 69 63-135 19-87 (268)
55 cd05005 SIS_PHI Hexulose-6-pho 93.6 0.13 2.8E-06 40.0 4.5 71 66-149 52-125 (179)
56 cd06277 PBP1_LacI_like_1 Ligan 93.6 0.43 9.4E-06 37.3 7.5 68 63-135 22-89 (268)
57 cd06298 PBP1_CcpA_like Ligand- 93.6 0.45 9.7E-06 36.9 7.5 68 64-135 20-87 (268)
58 cd06278 PBP1_LacI_like_2 Ligan 93.5 0.43 9.3E-06 36.8 7.3 68 63-135 19-86 (266)
59 cd06319 PBP1_ABC_sugar_binding 93.5 0.44 9.6E-06 37.2 7.4 70 63-135 19-89 (277)
60 TIGR02417 fruct_sucro_rep D-fr 93.5 0.45 9.7E-06 38.8 7.7 70 63-135 80-149 (327)
61 PRK09552 mtnX 2-hydroxy-3-keto 93.4 0.23 5E-06 39.5 5.7 99 47-149 63-184 (219)
62 PRK10355 xylF D-xylose transpo 93.4 0.47 1E-05 40.1 7.9 69 64-135 46-115 (330)
63 PRK09701 D-allose transporter 93.4 0.4 8.6E-06 39.6 7.3 72 63-135 44-116 (311)
64 cd06309 PBP1_YtfQ_like Peripla 93.4 0.42 9.1E-06 37.6 7.1 70 63-135 19-89 (273)
65 cd06271 PBP1_AglR_RafR_like Li 93.1 0.5 1.1E-05 36.5 7.1 69 63-135 23-91 (268)
66 PRK11557 putative DNA-binding 93.1 0.42 9.1E-06 39.3 7.0 96 45-148 114-224 (278)
67 TIGR03590 PseG pseudaminic aci 92.8 0.52 1.1E-05 39.4 7.3 75 67-148 47-123 (279)
68 cd06297 PBP1_LacI_like_12 Liga 92.7 0.64 1.4E-05 36.8 7.4 69 63-135 19-87 (269)
69 TIGR01512 ATPase-IB2_Cd heavy 92.7 0.26 5.6E-06 45.1 5.8 79 66-151 371-451 (536)
70 cd06283 PBP1_RegR_EndR_KdgR_li 92.6 0.78 1.7E-05 35.4 7.6 69 63-135 19-87 (267)
71 PRK10936 TMAO reductase system 92.6 0.48 1E-05 39.9 6.9 71 63-135 66-137 (343)
72 PRK14987 gluconate operon tran 92.6 0.77 1.7E-05 37.6 7.9 69 63-135 83-151 (331)
73 cd06293 PBP1_LacI_like_11 Liga 92.5 0.92 2E-05 35.5 7.9 69 63-135 19-87 (269)
74 cd06274 PBP1_FruR Ligand bindi 92.3 0.72 1.6E-05 36.0 7.1 69 63-135 19-87 (264)
75 cd05710 SIS_1 A subgroup of th 92.3 0.31 6.6E-06 35.9 4.7 45 104-148 49-96 (120)
76 TIGR00441 gmhA phosphoheptose 92.1 0.27 5.9E-06 37.8 4.4 49 101-149 78-129 (154)
77 TIGR01525 ATPase-IB_hvy heavy 92.0 0.47 1E-05 43.5 6.6 79 66-151 393-473 (556)
78 TIGR03127 RuMP_HxlB 6-phospho 91.8 0.33 7.1E-06 37.5 4.6 69 67-148 50-121 (179)
79 PRK11303 DNA-binding transcrip 91.8 0.94 2E-05 36.9 7.5 70 63-135 81-150 (328)
80 cd06300 PBP1_ABC_sugar_binding 91.8 1.4 3.1E-05 34.5 8.3 70 63-135 19-94 (272)
81 TIGR01664 DNA-3'-Pase DNA 3'-p 91.7 1.5 3.1E-05 34.4 8.2 88 65-152 50-162 (166)
82 cd01536 PBP1_ABC_sugar_binding 91.4 1.5 3.2E-05 33.6 7.7 71 63-136 19-90 (267)
83 cd06267 PBP1_LacI_sugar_bindin 91.3 1.5 3.2E-05 33.3 7.6 70 63-136 19-88 (264)
84 cd01574 PBP1_LacI Ligand-bindi 91.2 1.2 2.5E-05 34.6 7.1 71 62-135 18-88 (264)
85 PRK12342 hypothetical protein; 91.2 1.3 2.8E-05 37.9 8.0 67 66-136 44-119 (254)
86 cd06307 PBP1_uncharacterized_s 91.2 0.63 1.4E-05 36.7 5.7 72 63-135 19-92 (275)
87 cd06291 PBP1_Qymf_like Ligand 91.1 0.98 2.1E-05 35.2 6.7 66 63-135 19-84 (265)
88 cd06290 PBP1_LacI_like_9 Ligan 91.1 1.3 2.9E-05 34.4 7.4 68 63-135 19-86 (265)
89 PRK11337 DNA-binding transcrip 91.1 0.86 1.9E-05 37.8 6.7 94 47-148 128-236 (292)
90 cd05006 SIS_GmhA Phosphoheptos 90.8 0.45 9.8E-06 36.9 4.5 47 103-149 102-151 (177)
91 TIGR02955 TMAO_TorT TMAO reduc 90.7 1.2 2.7E-05 36.1 7.1 69 63-135 19-90 (295)
92 PRK13937 phosphoheptose isomer 90.6 0.5 1.1E-05 37.6 4.7 48 102-149 106-156 (188)
93 cd01537 PBP1_Repressors_Sugar_ 90.5 2 4.4E-05 32.4 7.7 71 63-136 19-89 (264)
94 PRK15395 methyl-galactoside AB 90.4 1.6 3.4E-05 36.6 7.7 70 63-135 44-115 (330)
95 COG1609 PurR Transcriptional r 90.2 1.6 3.4E-05 37.5 7.7 70 63-136 78-147 (333)
96 PF00702 Hydrolase: haloacid d 90.2 0.95 2.1E-05 34.2 5.7 73 65-144 135-214 (215)
97 TIGR01481 ccpA catabolite cont 90.0 2 4.2E-05 35.0 7.8 69 63-135 79-147 (329)
98 TIGR01511 ATPase-IB1_Cu copper 89.8 1.1 2.5E-05 41.4 7.0 77 67-151 415-492 (562)
99 cd06284 PBP1_LacI_like_6 Ligan 89.8 1.9 4.2E-05 33.2 7.3 68 63-135 19-86 (267)
100 TIGR02137 HSK-PSP phosphoserin 89.7 2 4.3E-05 34.7 7.5 78 64-149 75-168 (203)
101 TIGR01491 HAD-SF-IB-PSPlk HAD- 89.6 2.5 5.3E-05 32.0 7.6 92 49-148 72-186 (201)
102 cd06279 PBP1_LacI_like_3 Ligan 89.5 1.7 3.8E-05 34.6 7.0 65 63-135 24-88 (283)
103 PRK13936 phosphoheptose isomer 89.3 0.72 1.6E-05 37.1 4.6 47 102-148 111-163 (197)
104 TIGR01522 ATPase-IIA2_Ca golgi 89.2 1.6 3.4E-05 42.7 7.7 39 113-151 604-643 (884)
105 cd06360 PBP1_alkylbenzenes_lik 88.8 1.7 3.7E-05 35.2 6.6 69 64-135 153-224 (336)
106 cd06347 PBP1_ABC_ligand_bindin 88.7 1.2 2.6E-05 35.9 5.5 67 65-134 156-223 (334)
107 TIGR00393 kpsF KpsF/GutQ famil 88.7 0.63 1.4E-05 37.7 4.0 78 65-150 18-98 (268)
108 cd06361 PBP1_GPC6A_like Ligand 88.5 2.6 5.7E-05 36.9 8.0 71 65-135 192-267 (403)
109 cd06280 PBP1_LacI_like_4 Ligan 88.5 2.8 6.1E-05 32.7 7.4 68 63-135 19-86 (263)
110 COG1737 RpiR Transcriptional r 88.5 1.3 2.9E-05 37.3 6.0 96 45-149 116-227 (281)
111 cd06275 PBP1_PurR Ligand-bindi 88.4 3 6.5E-05 32.4 7.5 70 63-135 19-88 (269)
112 cd06272 PBP1_hexuronate_repres 88.4 2.5 5.4E-05 32.9 7.0 65 63-135 19-83 (261)
113 PRK00414 gmhA phosphoheptose i 88.3 0.94 2E-05 36.4 4.7 48 101-148 110-160 (192)
114 TIGR01490 HAD-SF-IB-hyp1 HAD-s 88.0 4.4 9.5E-05 31.0 8.1 75 67-148 97-194 (202)
115 PRK10423 transcriptional repre 87.9 3 6.5E-05 33.8 7.4 69 63-134 76-144 (327)
116 cd06342 PBP1_ABC_LIVBP_like Ty 87.1 2.1 4.5E-05 34.6 6.0 67 66-135 156-223 (334)
117 cd06304 PBP1_BmpA_like Peripla 87.0 3.2 7E-05 32.9 7.0 68 63-135 21-89 (260)
118 PRK10703 DNA-binding transcrip 86.9 4 8.7E-05 33.5 7.7 69 63-135 79-148 (341)
119 COG0546 Gph Predicted phosphat 86.9 1.4 3.1E-05 35.2 5.0 83 63-151 95-191 (220)
120 cd06286 PBP1_CcpB_like Ligand- 86.4 3.5 7.5E-05 32.0 6.8 68 63-135 19-86 (260)
121 TIGR00147 lipid kinase, YegS/R 86.3 3.2 6.9E-05 34.4 6.9 22 102-123 57-78 (293)
122 cd06330 PBP1_Arsenic_SBP_like 86.3 1.6 3.5E-05 35.9 5.1 66 65-133 158-228 (346)
123 COG0560 SerB Phosphoserine pho 86.2 2.6 5.7E-05 34.5 6.3 98 49-150 68-185 (212)
124 TIGR01489 DKMTPPase-SF 2,3-dik 86.1 2.2 4.7E-05 31.9 5.3 83 58-148 72-185 (188)
125 PRK10671 copA copper exporting 86.0 2.2 4.9E-05 41.2 6.6 78 67-151 660-738 (834)
126 PF04123 DUF373: Domain of unk 86.0 3.4 7.5E-05 37.1 7.4 72 63-134 54-134 (344)
127 PRK07239 bifunctional uroporph 85.8 2.5 5.3E-05 36.7 6.2 82 59-142 19-114 (381)
128 cd04509 PBP1_ABC_transporter_G 85.8 2.5 5.4E-05 32.4 5.6 68 64-134 155-225 (299)
129 PF02310 B12-binding: B12 bind 85.6 7.5 0.00016 27.5 7.7 67 63-135 18-89 (121)
130 cd01391 Periplasmic_Binding_Pr 85.6 6.3 0.00014 29.1 7.5 71 63-136 20-92 (269)
131 COG1879 RbsB ABC-type sugar tr 85.6 2.5 5.4E-05 34.9 5.9 69 63-135 53-125 (322)
132 PRK14101 bifunctional glucokin 85.4 3.1 6.7E-05 39.0 7.1 96 45-149 454-564 (638)
133 PRK13938 phosphoheptose isomer 85.3 1.3 2.9E-05 36.2 4.1 49 102-150 113-164 (196)
134 PRK09484 3-deoxy-D-manno-octul 85.3 3.3 7.2E-05 32.5 6.2 77 60-146 52-133 (183)
135 cd06276 PBP1_FucR_like Ligand- 85.3 4.1 8.8E-05 32.5 6.8 67 63-135 18-85 (247)
136 PRK02947 hypothetical protein; 85.2 1.5 3.3E-05 36.5 4.5 48 101-148 105-166 (246)
137 cd06268 PBP1_ABC_transporter_L 85.1 2.9 6.3E-05 32.0 5.7 69 64-135 154-223 (298)
138 TIGR03333 salvage_mtnX 2-hydro 85.1 7.5 0.00016 30.8 8.2 98 47-148 59-179 (214)
139 PRK11543 gutQ D-arabinose 5-ph 85.0 1.7 3.7E-05 36.4 4.7 75 66-148 61-138 (321)
140 PRK13582 thrH phosphoserine ph 84.8 3.3 7.1E-05 31.8 5.9 86 57-150 67-169 (205)
141 PF15608 PELOTA_1: PELOTA RNA 84.6 2.9 6.2E-05 31.9 5.3 42 93-135 46-89 (100)
142 PRK10892 D-arabinose 5-phospha 84.5 1.3 2.8E-05 37.3 3.8 76 65-148 65-143 (326)
143 cd06337 PBP1_ABC_ligand_bindin 84.5 2.5 5.3E-05 35.6 5.5 64 67-133 170-234 (357)
144 cd06354 PBP1_BmpA_PnrA_like Pe 84.4 4.6 0.0001 32.3 6.8 68 63-135 22-90 (265)
145 PRK11302 DNA-binding transcrip 84.2 1.9 4E-05 35.4 4.5 95 46-149 115-224 (284)
146 cd08189 Fe-ADH5 Iron-containin 83.6 5.5 0.00012 34.8 7.5 78 65-143 17-101 (374)
147 cd06346 PBP1_ABC_ligand_bindin 83.6 4.3 9.3E-05 33.2 6.4 75 56-133 142-223 (312)
148 cd06288 PBP1_sucrose_transcrip 83.6 7.2 0.00016 30.2 7.4 68 63-135 20-87 (269)
149 TIGR02726 phenyl_P_delta pheny 83.6 7.7 0.00017 30.9 7.7 78 61-147 39-120 (169)
150 cd08185 Fe-ADH1 Iron-containin 83.5 7.7 0.00017 33.9 8.3 79 65-143 17-101 (380)
151 cd06269 PBP1_glutamate_recepto 83.5 8.7 0.00019 29.5 7.7 69 65-135 160-231 (298)
152 cd06375 PBP1_mGluR_groupII Lig 83.3 5.1 0.00011 35.7 7.2 66 67-134 196-264 (458)
153 PLN02770 haloacid dehalogenase 83.2 11 0.00023 30.8 8.5 39 46-84 96-135 (248)
154 cd06287 PBP1_LacI_like_8 Ligan 83.1 3.4 7.3E-05 33.3 5.5 63 62-135 26-88 (269)
155 cd08188 Fe-ADH4 Iron-containin 82.7 6 0.00013 34.7 7.3 88 54-142 2-102 (377)
156 cd06350 PBP1_GPCR_family_C_lik 82.6 7.2 0.00016 31.9 7.3 67 66-135 181-252 (348)
157 cd06335 PBP1_ABC_ligand_bindin 82.5 3.3 7.2E-05 34.5 5.4 67 65-134 158-225 (347)
158 PRK05441 murQ N-acetylmuramic 82.5 2.4 5.1E-05 36.6 4.7 49 102-150 131-182 (299)
159 TIGR00274 N-acetylmuramic acid 82.5 2.4 5.2E-05 36.6 4.7 49 102-150 126-177 (291)
160 TIGR01422 phosphonatase phosph 82.3 18 0.0004 29.0 9.5 74 57-135 98-183 (253)
161 PRK09860 putative alcohol dehy 82.0 6.5 0.00014 34.7 7.3 77 65-142 22-105 (383)
162 cd06333 PBP1_ABC-type_HAAT_lik 81.8 3.6 7.8E-05 33.3 5.3 68 64-134 152-220 (312)
163 PF02602 HEM4: Uroporphyrinoge 81.8 0.92 2E-05 35.6 1.8 77 63-141 130-211 (231)
164 cd06338 PBP1_ABC_ligand_bindin 81.7 4.6 0.0001 33.1 5.9 64 66-132 162-226 (345)
165 cd05007 SIS_Etherase N-acetylm 81.4 3 6.5E-05 35.1 4.8 48 102-149 118-168 (257)
166 PRK13222 phosphoglycolate phos 81.1 10 0.00022 29.3 7.4 85 57-146 92-187 (226)
167 cd06340 PBP1_ABC_ligand_bindin 80.9 4 8.8E-05 34.0 5.4 71 56-129 149-226 (347)
168 cd06363 PBP1_Taste_receptor Li 80.9 7.5 0.00016 33.5 7.2 69 65-134 196-267 (410)
169 cd06332 PBP1_aromatic_compound 80.9 5.5 0.00012 32.1 6.0 59 73-134 160-220 (333)
170 TIGR01261 hisB_Nterm histidino 80.8 8.4 0.00018 30.1 6.8 87 57-144 28-139 (161)
171 cd05017 SIS_PGI_PMI_1 The memb 80.4 4.2 9E-05 29.6 4.7 42 102-145 43-87 (119)
172 cd06355 PBP1_FmdD_like Peripla 79.6 7.5 0.00016 32.6 6.6 67 66-135 154-224 (348)
173 PRK13226 phosphoglycolate phos 79.3 13 0.00027 29.8 7.6 38 47-84 84-122 (229)
174 cd06331 PBP1_AmiC_like Type I 78.8 8.1 0.00018 31.8 6.5 66 66-134 153-222 (333)
175 PRK15404 leucine ABC transport 78.5 6.6 0.00014 33.6 6.0 67 66-135 182-249 (369)
176 cd06336 PBP1_ABC_ligand_bindin 78.4 5.6 0.00012 33.2 5.5 65 65-132 158-224 (347)
177 cd06366 PBP1_GABAb_receptor Li 78.3 11 0.00024 31.1 7.2 63 65-128 155-218 (350)
178 cd06368 PBP1_iGluR_non_NMDA_li 78.3 8.7 0.00019 31.2 6.5 58 68-128 149-206 (324)
179 cd06329 PBP1_SBP_like_3 Peripl 78.2 5.8 0.00013 32.9 5.5 68 65-135 163-234 (342)
180 cd06362 PBP1_mGluR Ligand bind 78.1 11 0.00025 32.6 7.5 66 66-133 193-263 (452)
181 cd06334 PBP1_ABC_ligand_bindin 78.0 7.6 0.00017 33.0 6.3 77 56-135 145-228 (351)
182 cd06311 PBP1_ABC_sugar_binding 77.9 21 0.00045 28.1 8.3 51 93-144 175-229 (274)
183 PF07279 DUF1442: Protein of u 77.9 4.9 0.00011 34.3 5.0 52 101-156 114-166 (218)
184 cd06348 PBP1_ABC_ligand_bindin 77.6 4.9 0.00011 33.1 4.9 68 65-135 157-225 (344)
185 cd02750 MopB_Nitrate-R-NarG-li 77.5 4.3 9.4E-05 36.2 4.8 48 101-149 169-221 (461)
186 cd08192 Fe-ADH7 Iron-containin 77.2 13 0.00027 32.4 7.5 78 65-143 15-99 (370)
187 PRK11041 DNA-binding transcrip 77.2 16 0.00035 29.2 7.6 68 63-135 55-123 (309)
188 PRK10624 L-1,2-propanediol oxi 77.0 9.7 0.00021 33.4 6.8 86 57-143 7-105 (382)
189 cd02071 MM_CoA_mut_B12_BD meth 76.8 23 0.00049 26.2 7.8 83 66-155 20-118 (122)
190 cd06326 PBP1_STKc_like Type I 76.8 6.4 0.00014 31.9 5.3 66 65-133 156-222 (336)
191 cd06343 PBP1_ABC_ligand_bindin 76.7 7.4 0.00016 32.3 5.7 68 65-135 164-233 (362)
192 PF13458 Peripla_BP_6: Peripla 76.7 15 0.00033 29.6 7.4 78 64-144 154-236 (343)
193 PRK13478 phosphonoacetaldehyde 76.3 40 0.00088 27.5 9.9 75 57-135 100-185 (267)
194 cd06357 PBP1_AmiC Periplasmic 76.2 17 0.00037 30.7 7.9 62 65-129 152-216 (360)
195 TIGR01449 PGP_bact 2-phosphogl 76.2 11 0.00023 29.0 6.1 20 65-84 93-112 (213)
196 PRK11382 frlB fructoselysine-6 76.1 5 0.00011 34.7 4.7 48 104-151 94-144 (340)
197 TIGR01116 ATPase-IIA1_Ca sarco 76.0 7.9 0.00017 38.2 6.5 36 116-151 620-656 (917)
198 cd01543 PBP1_XylR Ligand-bindi 75.6 9.7 0.00021 29.9 5.9 62 63-135 18-80 (265)
199 cd01391 Periplasmic_Binding_Pr 75.4 10 0.00022 28.0 5.6 63 64-128 144-207 (269)
200 cd06345 PBP1_ABC_ligand_bindin 75.0 8.3 0.00018 31.8 5.6 64 66-132 165-229 (344)
201 PRK09492 treR trehalose repres 75.0 15 0.00032 29.7 6.9 67 63-135 82-148 (315)
202 cd01987 USP_OKCHK USP domain i 74.9 26 0.00056 24.5 8.7 50 92-142 52-101 (124)
203 PRK10727 DNA-binding transcrip 74.7 20 0.00044 29.6 7.7 68 63-135 79-147 (343)
204 TIGR03649 ergot_EASG ergot alk 74.2 6.3 0.00014 31.8 4.6 74 61-134 11-104 (285)
205 cd01544 PBP1_GalR Ligand-bindi 74.0 8.7 0.00019 30.3 5.3 60 63-135 24-83 (270)
206 cd06327 PBP1_SBP_like_1 Peripl 73.9 7.5 0.00016 32.0 5.0 67 65-134 155-224 (334)
207 cd08186 Fe-ADH8 Iron-containin 73.9 19 0.00041 31.7 7.8 80 65-144 14-103 (383)
208 TIGR01524 ATPase-IIIB_Mg magne 73.8 12 0.00025 36.9 7.0 34 116-149 592-626 (867)
209 PRK01122 potassium-transportin 73.8 12 0.00026 36.4 7.0 76 67-150 455-532 (679)
210 PRK11914 diacylglycerol kinase 73.7 12 0.00026 31.4 6.3 43 101-143 63-105 (306)
211 cd01473 vWA_CTRP CTRP for CS 73.6 8.2 0.00018 30.7 5.1 60 85-145 86-160 (192)
212 PRK09189 uroporphyrinogen-III 73.1 3.9 8.4E-05 33.0 3.1 76 63-142 131-216 (240)
213 PF13580 SIS_2: SIS domain; PD 72.9 5.7 0.00012 30.0 3.8 43 90-132 91-136 (138)
214 PRK10401 DNA-binding transcrip 72.9 23 0.00049 29.3 7.7 68 63-135 79-147 (346)
215 cd02751 MopB_DMSOR-like The Mo 72.9 4.8 0.0001 37.2 4.1 47 102-149 169-229 (609)
216 cd08551 Fe-ADH iron-containing 72.7 16 0.00036 31.5 7.0 78 65-143 14-98 (370)
217 cd08187 BDH Butanol dehydrogen 72.5 19 0.00041 31.6 7.4 80 65-144 20-105 (382)
218 PF13419 HAD_2: Haloacid dehal 72.5 18 0.00039 25.8 6.2 86 55-146 74-169 (176)
219 cd06380 PBP1_iGluR_AMPA N-term 72.4 13 0.00029 31.3 6.3 67 67-134 147-219 (382)
220 cd02766 MopB_3 The MopB_3 CD i 72.2 6.6 0.00014 35.6 4.7 48 101-149 156-208 (501)
221 cd04795 SIS SIS domain. SIS (S 72.1 7.9 0.00017 25.5 4.0 61 66-133 17-81 (87)
222 PRK12570 N-acetylmuramic acid- 71.9 7.3 0.00016 33.7 4.7 47 104-150 129-178 (296)
223 PRK10339 DNA-binding transcrip 71.7 10 0.00022 31.1 5.3 59 63-135 87-145 (327)
224 PF03720 UDPG_MGDP_dh_C: UDP-g 71.6 7.9 0.00017 28.0 4.2 51 63-117 20-81 (106)
225 cd00861 ProRS_anticodon_short 71.5 24 0.00051 23.9 6.4 34 100-134 29-63 (94)
226 PF05368 NmrA: NmrA-like famil 71.5 6.1 0.00013 31.0 3.8 72 62-135 11-103 (233)
227 TIGR01670 YrbI-phosphatas 3-de 71.2 30 0.00066 26.3 7.5 74 65-147 36-114 (154)
228 cd08194 Fe-ADH6 Iron-containin 71.2 23 0.00049 31.0 7.6 78 65-143 14-98 (375)
229 cd02759 MopB_Acetylene-hydrata 71.2 8.6 0.00019 34.3 5.1 48 101-149 159-212 (477)
230 PRK05446 imidazole glycerol-ph 71.2 14 0.0003 33.1 6.4 106 48-154 20-158 (354)
231 cd00860 ThrRS_anticodon ThrRS 70.6 13 0.00029 24.7 4.9 44 63-112 18-61 (91)
232 PLN03243 haloacid dehalogenase 70.6 32 0.0007 28.7 8.2 29 56-84 107-136 (260)
233 PF13242 Hydrolase_like: HAD-h 70.2 29 0.00063 23.1 6.5 47 81-135 3-51 (75)
234 PRK10886 DnaA initiator-associ 70.2 8.6 0.00019 31.5 4.6 48 101-148 108-161 (196)
235 PF00072 Response_reg: Respons 69.9 30 0.00065 23.1 7.3 65 64-137 13-82 (112)
236 PF02602 HEM4: Uroporphyrinoge 69.9 6.3 0.00014 30.9 3.6 78 65-143 3-90 (231)
237 cd06358 PBP1_NHase Type I peri 69.7 18 0.00038 29.8 6.3 62 65-129 152-214 (333)
238 cd01536 PBP1_ABC_sugar_binding 69.6 34 0.00073 26.1 7.5 69 64-133 142-213 (267)
239 cd06352 PBP1_NPR_GC_like Ligan 69.5 16 0.00034 30.7 6.1 66 65-134 158-229 (389)
240 PRK05928 hemD uroporphyrinogen 69.5 4.3 9.2E-05 31.8 2.5 76 63-142 138-223 (249)
241 cd08176 LPO Lactadehyde:propan 69.4 21 0.00045 31.3 7.0 78 65-143 19-103 (377)
242 PRK06849 hypothetical protein; 69.3 12 0.00025 32.5 5.4 53 61-113 16-87 (389)
243 cd06356 PBP1_Amide_Urea_BP_lik 69.1 20 0.00044 29.7 6.6 69 56-127 137-212 (334)
244 TIGR01497 kdpB K+-transporting 68.7 19 0.00041 35.0 7.1 76 67-150 456-533 (675)
245 TIGR02638 lactal_redase lactal 68.5 20 0.00044 31.4 6.8 77 65-142 20-103 (379)
246 PRK11263 cardiolipin synthase 68.4 35 0.00077 30.9 8.4 69 73-142 190-263 (411)
247 TIGR01517 ATPase-IIB_Ca plasma 68.0 24 0.00052 34.9 7.8 36 114-149 656-692 (941)
248 PF12683 DUF3798: Protein of u 67.8 9.9 0.00021 33.6 4.7 80 77-156 37-119 (275)
249 PRK11133 serB phosphoserine ph 67.8 22 0.00048 31.1 6.8 80 63-150 187-289 (322)
250 cd02765 MopB_4 The MopB_4 CD i 67.6 8.7 0.00019 35.4 4.5 48 101-149 158-210 (567)
251 cd07766 DHQ_Fe-ADH Dehydroquin 67.3 26 0.00056 29.6 7.0 76 65-143 14-96 (332)
252 PF13380 CoA_binding_2: CoA bi 67.3 22 0.00047 26.4 5.8 72 60-135 14-109 (116)
253 cd01477 vWA_F09G8-8_type VWA F 67.1 11 0.00023 30.5 4.4 33 104-136 133-171 (193)
254 cd02755 MopB_Thiosulfate-R-lik 67.1 11 0.00024 33.5 5.0 47 102-149 156-208 (454)
255 TIGR00338 serB phosphoserine p 66.6 27 0.00058 27.1 6.5 95 48-150 76-193 (219)
256 PF14336 DUF4392: Domain of un 66.3 16 0.00035 31.6 5.6 68 65-135 68-184 (291)
257 TIGR00522 dph5 diphthine synth 65.8 9.9 0.00021 32.0 4.2 80 54-135 76-167 (257)
258 TIGR03479 DMSO_red_II_alp DMSO 65.7 9.3 0.0002 37.6 4.5 48 101-149 223-275 (912)
259 cd08182 HEPD Hydroxyethylphosp 65.7 37 0.00079 29.5 7.8 75 65-143 14-95 (367)
260 PRK15122 magnesium-transportin 65.7 21 0.00046 35.4 7.0 36 114-149 625-661 (903)
261 cd06325 PBP1_ABC_uncharacteriz 65.6 18 0.00038 28.3 5.3 68 63-135 18-90 (281)
262 PRK05234 mgsA methylglyoxal sy 65.6 25 0.00053 27.5 6.1 87 64-155 40-134 (142)
263 PRK13055 putative lipid kinase 65.5 25 0.00055 30.3 6.7 53 92-145 23-77 (334)
264 PRK11033 zntA zinc/cadmium/mer 65.4 15 0.00032 35.5 5.7 76 67-151 578-654 (741)
265 PRK10517 magnesium-transportin 65.4 25 0.00054 34.9 7.4 35 116-150 627-662 (902)
266 PRK13288 pyrophosphatase PpaX; 65.3 26 0.00056 27.3 6.2 28 57-84 81-109 (214)
267 cd02762 MopB_1 The MopB_1 CD i 65.3 9.4 0.0002 34.7 4.2 48 101-149 155-213 (539)
268 PRK13054 lipid kinase; Reviewe 64.9 32 0.0007 28.9 7.1 51 101-151 55-109 (300)
269 COG0683 LivK ABC-type branched 64.7 18 0.0004 31.0 5.7 66 67-135 170-236 (366)
270 PRK08674 bifunctional phosphog 64.7 12 0.00027 32.1 4.7 41 104-146 80-123 (337)
271 cd01453 vWA_transcription_fact 64.7 15 0.00031 29.1 4.7 60 85-145 87-156 (183)
272 PRK14010 potassium-transportin 64.5 21 0.00046 34.6 6.6 38 113-150 490-528 (673)
273 PRK07239 bifunctional uroporph 64.4 19 0.0004 31.3 5.7 76 65-142 162-252 (381)
274 cd06409 PB1_MUG70 The MUG70 pr 64.4 10 0.00022 27.9 3.5 27 106-132 55-81 (86)
275 TIGR02405 trehalos_R_Ecol treh 64.2 38 0.00082 27.6 7.2 66 63-135 79-145 (311)
276 PRK01642 cls cardiolipin synth 64.2 41 0.00089 30.8 8.1 67 73-140 302-373 (483)
277 COG4634 Uncharacterized protei 64.2 10 0.00023 29.6 3.7 49 65-120 13-63 (113)
278 PLN02575 haloacid dehalogenase 64.0 70 0.0015 29.1 9.4 40 45-84 203-243 (381)
279 PF13419 HAD_2: Haloacid dehal 63.8 37 0.00081 24.1 6.3 44 85-132 133-176 (176)
280 cd01450 vWFA_subfamily_ECM Von 63.5 20 0.00044 25.6 4.9 43 104-146 105-154 (161)
281 PRK13337 putative lipid kinase 63.3 32 0.0007 29.0 6.8 52 101-152 56-109 (304)
282 PRK00331 glucosamine--fructose 63.2 12 0.00027 34.6 4.6 46 104-149 338-386 (604)
283 cd06379 PBP1_iGluR_NMDA_NR1 N- 63.2 21 0.00045 30.2 5.7 59 67-128 176-239 (377)
284 TIGR01647 ATPase-IIIA_H plasma 63.1 31 0.00067 33.4 7.4 34 117-150 525-559 (755)
285 cd06578 HemD Uroporphyrinogen- 62.9 8.5 0.00018 29.6 3.0 77 65-142 137-218 (239)
286 PRK13059 putative lipid kinase 62.9 33 0.00071 28.9 6.8 25 101-125 55-79 (295)
287 TIGR01470 cysG_Nterm siroheme 62.9 18 0.00039 29.5 5.0 71 63-135 22-103 (205)
288 COG1358 RPL8A Ribosomal protei 62.1 29 0.00062 26.7 5.8 53 92-147 33-89 (116)
289 cd08180 PDD 1,3-propanediol de 61.7 43 0.00093 28.7 7.4 84 58-143 4-96 (332)
290 cd06278 PBP1_LacI_like_2 Ligan 61.6 69 0.0015 24.6 7.9 55 80-134 7-62 (266)
291 PF03129 HGTP_anticodon: Antic 61.5 17 0.00036 24.9 4.0 41 65-111 21-61 (94)
292 cd01988 Na_H_Antiporter_C The 61.3 31 0.00066 23.9 5.4 46 92-137 59-105 (132)
293 smart00851 MGS MGS-like domain 61.3 24 0.00052 24.5 4.8 44 64-111 21-64 (90)
294 TIGR01591 Fdh-alpha formate de 61.1 17 0.00037 33.7 5.1 47 102-149 155-206 (671)
295 TIGR03702 lip_kinase_YegS lipi 61.0 42 0.00091 28.1 7.1 52 93-145 18-70 (293)
296 cd06371 PBP1_sensory_GC_DEF_li 61.0 32 0.0007 29.6 6.5 63 64-128 151-219 (382)
297 cd00003 PNPsynthase Pyridoxine 61.0 8.5 0.00018 33.2 3.0 49 109-157 106-154 (234)
298 cd00532 MGS-like MGS-like doma 61.0 33 0.00071 25.0 5.7 67 60-130 23-103 (112)
299 PRK04175 rpl7ae 50S ribosomal 60.9 29 0.00063 26.5 5.6 53 92-147 36-92 (122)
300 cd03134 GATase1_PfpI_like A ty 60.8 6.3 0.00014 29.6 1.9 72 64-135 17-103 (165)
301 TIGR02370 pyl_corrinoid methyl 60.7 33 0.00071 27.7 6.2 64 65-135 104-175 (197)
302 PRK12452 cardiolipin synthetas 60.7 53 0.0011 30.5 8.2 69 73-142 328-401 (509)
303 COG2185 Sbm Methylmalonyl-CoA 60.6 39 0.00085 27.1 6.5 78 56-139 15-107 (143)
304 PRK05752 uroporphyrinogen-III 60.6 6.1 0.00013 32.4 1.9 69 63-136 143-220 (255)
305 COG1597 LCB5 Sphingosine kinas 60.5 43 0.00094 28.8 7.2 72 72-146 5-77 (301)
306 PRK09423 gldA glycerol dehydro 60.4 56 0.0012 28.5 8.0 78 65-144 21-103 (366)
307 cd06324 PBP1_ABC_sugar_binding 60.4 71 0.0015 26.0 8.2 53 91-144 190-248 (305)
308 PF04244 DPRP: Deoxyribodipyri 60.3 30 0.00065 29.1 6.0 81 65-145 54-140 (224)
309 cd01476 VWA_integrin_invertebr 60.1 26 0.00056 25.9 5.1 53 83-136 79-141 (163)
310 PRK05967 cystathionine beta-ly 60.1 26 0.00056 31.5 6.0 84 55-148 105-205 (395)
311 cd06365 PBP1_Pheromone_recepto 60.1 52 0.0011 29.4 7.9 70 65-135 192-265 (469)
312 cd01482 vWA_collagen_alphaI-XI 60.0 25 0.00054 26.5 5.1 42 104-145 105-151 (164)
313 TIGR00559 pdxJ pyridoxine 5'-p 59.8 9.8 0.00021 32.9 3.1 69 74-156 85-153 (237)
314 cd05009 SIS_GlmS_GlmD_2 SIS (S 59.7 18 0.0004 26.2 4.2 42 104-147 63-108 (153)
315 PRK05613 O-acetylhomoserine am 59.4 40 0.00086 30.6 7.1 70 55-131 110-190 (437)
316 cd01422 MGS Methylglyoxal synt 59.3 52 0.0011 24.5 6.6 63 64-130 35-105 (115)
317 TIGR01548 HAD-SF-IA-hyp1 haloa 59.2 54 0.0012 25.3 7.0 67 64-135 113-187 (197)
318 TIGR01672 AphA HAD superfamily 59.2 31 0.00067 29.1 6.0 85 46-135 102-193 (237)
319 PF00781 DAGK_cat: Diacylglyce 59.2 50 0.0011 24.1 6.5 56 92-148 18-75 (130)
320 cd02770 MopB_DmsA-EC This CD ( 59.2 13 0.00029 34.5 4.1 47 102-149 166-221 (617)
321 TIGR01459 HAD-SF-IIA-hyp4 HAD- 59.1 28 0.0006 28.2 5.5 66 65-135 32-104 (242)
322 cd02068 radical_SAM_B12_BD B12 59.0 55 0.0012 23.8 6.6 64 65-135 8-76 (127)
323 PF10727 Rossmann-like: Rossma 58.9 13 0.00029 28.6 3.4 64 60-125 20-91 (127)
324 TIGR01509 HAD-SF-IA-v3 haloaci 58.7 35 0.00076 25.1 5.6 73 64-142 92-172 (183)
325 PF13377 Peripla_BP_3: Peripla 58.6 29 0.00063 25.0 5.1 71 64-135 30-106 (160)
326 cd00859 HisRS_anticodon HisRS 58.6 21 0.00045 23.1 3.9 43 63-111 18-60 (91)
327 PRK11009 aphA acid phosphatase 58.5 32 0.0007 29.0 6.0 69 63-135 120-193 (237)
328 cd00861 ProRS_anticodon_short 58.5 18 0.00039 24.5 3.8 56 63-135 21-76 (94)
329 cd06388 PBP1_iGluR_AMPA_GluR4 58.5 28 0.0006 30.3 5.8 63 69-135 147-215 (371)
330 cd06364 PBP1_CaSR Ligand-bindi 58.4 28 0.0006 31.7 6.0 72 55-129 191-271 (510)
331 cd02065 B12-binding_like B12 b 58.2 62 0.0014 22.7 7.3 65 65-135 19-88 (125)
332 cd02763 MopB_2 The MopB_2 CD i 57.5 17 0.00037 35.2 4.6 48 101-149 154-206 (679)
333 cd06385 PBP1_NPR_A Ligand-bind 57.5 38 0.00083 28.9 6.3 63 64-129 167-229 (405)
334 TIGR01494 ATPase_P-type ATPase 57.4 31 0.00068 31.1 6.1 39 112-150 392-431 (499)
335 TIGR00111 pelota probable tran 57.4 32 0.00069 30.5 6.0 73 64-137 238-332 (351)
336 PRK13226 phosphoglycolate phos 57.2 49 0.0011 26.4 6.6 63 88-154 154-221 (229)
337 PRK00843 egsA NAD(P)-dependent 57.0 83 0.0018 27.4 8.4 75 66-143 25-105 (350)
338 cd02760 MopB_Phenylacetyl-CoA- 57.0 17 0.00036 35.5 4.5 49 101-150 172-226 (760)
339 TIGR01662 HAD-SF-IIIA HAD-supe 56.9 70 0.0015 22.9 7.1 19 65-83 33-51 (132)
340 cd01461 vWA_interalpha_trypsin 56.8 28 0.00062 25.5 4.8 45 102-146 99-151 (171)
341 cd02753 MopB_Formate-Dh-H Form 56.7 18 0.0004 32.3 4.5 48 101-149 155-207 (512)
342 PF14258 DUF4350: Domain of un 56.7 20 0.00044 23.8 3.7 57 63-132 8-69 (70)
343 cd06389 PBP1_iGluR_AMPA_GluR2 56.6 27 0.00059 30.1 5.4 38 98-135 172-213 (370)
344 PRK00103 rRNA large subunit me 56.5 94 0.002 24.8 8.0 79 74-152 33-126 (157)
345 cd06320 PBP1_allose_binding Pe 56.4 75 0.0016 24.8 7.4 69 65-134 144-215 (275)
346 PRK14649 UDP-N-acetylenolpyruv 56.3 11 0.00024 32.5 2.9 34 103-136 21-54 (295)
347 cd02067 B12-binding B12 bindin 56.0 73 0.0016 22.8 7.8 65 65-135 19-89 (119)
348 TIGR03677 rpl7ae 50S ribosomal 56.0 41 0.00088 25.4 5.6 52 92-146 32-87 (117)
349 PRK05576 cobalt-precorrin-2 C( 55.9 56 0.0012 26.5 6.8 58 92-151 81-142 (229)
350 cd06373 PBP1_NPR_like Ligand b 55.9 18 0.00039 30.7 4.1 61 65-129 166-228 (396)
351 PRK09526 lacI lac repressor; R 55.8 64 0.0014 26.3 7.2 68 63-134 83-152 (342)
352 COG2237 Predicted membrane pro 55.7 25 0.00054 32.3 5.1 72 64-135 55-135 (364)
353 cd06303 PBP1_LuxPQ_Quorum_Sens 55.7 64 0.0014 25.7 7.0 78 64-144 151-234 (280)
354 PRK06975 bifunctional uroporph 55.6 25 0.00054 33.7 5.4 72 63-136 152-236 (656)
355 TIGR00640 acid_CoA_mut_C methy 55.6 60 0.0013 24.9 6.6 64 66-135 23-92 (132)
356 PRK11587 putative phosphatase; 55.0 42 0.00092 26.4 5.8 30 56-85 81-111 (218)
357 TIGR00213 GmhB_yaeD D,D-heptos 54.9 69 0.0015 24.6 6.9 20 65-84 34-53 (176)
358 PF02769 AIRS_C: AIR synthase 54.6 82 0.0018 23.0 7.2 72 63-136 67-143 (153)
359 PRK09189 uroporphyrinogen-III 54.5 17 0.00037 29.3 3.6 78 57-142 6-91 (240)
360 TIGR03772 anch_rpt_subst ancho 54.4 1.9E+02 0.004 27.2 10.7 105 40-151 347-467 (479)
361 TIGR01509 HAD-SF-IA-v3 haloaci 54.4 85 0.0018 23.1 7.1 45 81-132 139-183 (183)
362 cd06367 PBP1_iGluR_NMDA N-term 54.3 31 0.00068 28.8 5.2 68 65-136 156-232 (362)
363 cd03174 DRE_TIM_metallolyase D 54.2 85 0.0018 25.1 7.5 73 63-135 77-168 (265)
364 TIGR01304 IMP_DH_rel_2 IMP deh 54.2 53 0.0012 29.7 7.0 71 58-135 117-196 (369)
365 PRK13368 3-deoxy-manno-octulos 54.1 47 0.001 26.2 6.0 47 86-135 25-72 (238)
366 PF11814 DUF3335: Peptidase_C3 54.0 16 0.00035 31.0 3.5 20 63-82 57-76 (207)
367 cd01475 vWA_Matrilin VWA_Matri 53.9 27 0.00058 28.0 4.6 41 104-144 110-155 (224)
368 cd06349 PBP1_ABC_ligand_bindin 53.9 36 0.00077 28.0 5.4 77 56-135 140-223 (340)
369 cd06302 PBP1_LsrB_Quorum_Sensi 53.8 82 0.0018 25.6 7.5 70 64-135 144-219 (298)
370 PRK02261 methylaspartate mutas 53.8 73 0.0016 24.5 6.8 64 65-135 23-93 (137)
371 TIGR02252 DREG-2 REG-2-like, H 53.8 43 0.00093 25.7 5.5 66 65-136 113-187 (203)
372 cd01481 vWA_collagen_alpha3-VI 53.7 32 0.00069 26.7 4.8 51 85-135 81-142 (165)
373 TIGR01663 PNK-3'Pase polynucle 53.4 73 0.0016 30.2 8.0 70 67-136 207-294 (526)
374 PRK10490 sensor protein KdpD; 53.3 47 0.001 32.8 6.9 46 89-136 301-346 (895)
375 cd06341 PBP1_ABC_ligand_bindin 53.2 23 0.00049 29.1 4.1 63 64-129 152-215 (341)
376 PF01565 FAD_binding_4: FAD bi 53.2 22 0.00048 25.9 3.7 33 104-136 2-34 (139)
377 PF10566 Glyco_hydro_97: Glyco 53.1 43 0.00092 29.3 6.0 66 85-150 28-114 (273)
378 PF02633 Creatininase: Creatin 53.1 22 0.00047 29.1 4.0 77 55-135 56-138 (237)
379 PF12710 HAD: haloacid dehalog 53.1 23 0.0005 26.4 3.8 62 67-135 99-184 (192)
380 PLN02981 glucosamine:fructose- 53.0 22 0.00048 34.1 4.6 46 103-148 411-459 (680)
381 TIGR01501 MthylAspMutase methy 52.8 62 0.0014 25.3 6.4 63 66-135 22-91 (134)
382 PRK00046 murB UDP-N-acetylenol 52.7 13 0.00029 33.0 2.9 34 103-136 21-54 (334)
383 PRK00002 aroB 3-dehydroquinate 52.6 91 0.002 27.1 8.0 77 65-143 22-110 (358)
384 TIGR02026 BchE magnesium-proto 52.6 52 0.0011 30.1 6.7 72 59-135 21-100 (497)
385 PF10740 DUF2529: Protein of u 52.6 24 0.00052 29.3 4.2 109 40-150 14-134 (172)
386 PF00564 PB1: PB1 domain; Int 52.6 14 0.0003 24.9 2.4 23 104-126 51-73 (84)
387 COG4087 Soluble P-type ATPase 52.6 15 0.00032 30.1 2.8 73 67-146 61-134 (152)
388 COG0074 SucD Succinyl-CoA synt 52.5 53 0.0011 29.4 6.5 61 72-141 66-129 (293)
389 cd02757 MopB_Arsenate-R This C 52.3 27 0.00058 32.0 4.8 48 101-149 161-215 (523)
390 COG0205 PfkA 6-phosphofructoki 52.3 79 0.0017 28.6 7.7 75 57-132 50-124 (347)
391 cd08170 GlyDH Glycerol dehydro 52.2 99 0.0021 26.6 8.1 77 65-143 14-95 (351)
392 PF00070 Pyr_redox: Pyridine n 52.2 36 0.00078 22.8 4.4 42 63-104 12-56 (80)
393 TIGR00676 fadh2 5,10-methylene 52.1 40 0.00088 28.4 5.6 82 55-136 4-98 (272)
394 TIGR00868 hCaCC calcium-activa 52.0 43 0.00093 33.8 6.5 44 103-146 405-452 (863)
395 TIGR03679 arCOG00187 arCOG0018 51.9 74 0.0016 26.1 7.0 37 100-136 54-96 (218)
396 PRK15488 thiosulfate reductase 51.9 23 0.00049 33.7 4.4 48 102-150 196-250 (759)
397 TIGR01656 Histidinol-ppas hist 51.8 94 0.002 23.2 7.0 78 58-135 27-127 (147)
398 cd01567 NAPRTase_PncB Nicotina 51.7 43 0.00094 29.1 5.8 48 88-135 275-328 (343)
399 PRK15454 ethanol dehydrogenase 51.7 46 0.001 29.7 6.1 87 57-143 26-124 (395)
400 cd06328 PBP1_SBP_like_2 Peripl 51.5 49 0.0011 27.5 5.9 67 65-134 156-225 (333)
401 cd02754 MopB_Nitrate-R-NapA-li 51.4 26 0.00056 31.8 4.6 48 101-149 156-210 (565)
402 cd01994 Alpha_ANH_like_IV This 51.4 70 0.0015 25.9 6.6 37 100-136 56-98 (194)
403 TIGR03471 HpnJ hopanoid biosyn 51.3 1.2E+02 0.0026 27.3 8.7 59 91-151 263-323 (472)
404 PRK08811 uroporphyrinogen-III 51.3 15 0.00033 31.0 2.9 77 63-143 31-112 (266)
405 PF00290 Trp_syntA: Tryptophan 51.2 1.3E+02 0.0027 26.0 8.5 56 65-124 107-162 (259)
406 PF05991 NYN_YacP: YacP-like N 51.2 87 0.0019 24.7 7.0 55 70-130 64-118 (166)
407 PF12076 Wax2_C: WAX2 C-termin 51.1 16 0.00036 30.1 3.0 61 58-138 7-67 (164)
408 cd00609 AAT_like Aspartate ami 51.0 53 0.0011 26.3 5.8 76 55-131 85-170 (350)
409 PF09338 Gly_reductase: Glycin 51.0 48 0.001 31.0 6.3 40 96-135 297-341 (428)
410 cd00738 HGTP_anticodon HGTP an 50.9 46 0.001 22.1 4.8 40 66-111 24-63 (94)
411 PF10686 DUF2493: Protein of u 50.8 66 0.0014 22.4 5.6 54 79-133 8-64 (71)
412 TIGR00262 trpA tryptophan synt 50.7 96 0.0021 26.2 7.6 55 66-124 108-162 (256)
413 PRK10826 2-deoxyglucose-6-phos 50.6 1.2E+02 0.0026 23.7 7.7 20 65-84 100-119 (222)
414 TIGR02253 CTE7 HAD superfamily 50.6 1.1E+02 0.0025 23.5 8.8 68 63-135 100-176 (221)
415 PRK06769 hypothetical protein; 50.6 28 0.00062 27.0 4.1 20 65-84 36-55 (173)
416 TIGR01467 cobI_cbiL precorrin- 50.6 77 0.0017 25.5 6.8 59 92-152 81-143 (230)
417 cd06382 PBP1_iGluR_Kainate N-t 50.6 40 0.00087 27.6 5.2 61 65-129 145-208 (327)
418 TIGR01135 glmS glucosamine--fr 50.4 27 0.00057 32.5 4.6 46 104-149 340-388 (607)
419 TIGR02482 PFKA_ATP 6-phosphofr 50.2 57 0.0012 28.6 6.3 65 67-132 57-121 (301)
420 cd06374 PBP1_mGluR_groupI Liga 50.0 70 0.0015 28.4 7.0 67 65-134 206-279 (472)
421 cd06344 PBP1_ABC_ligand_bindin 49.9 46 0.00099 27.4 5.5 41 92-133 182-222 (332)
422 cd06376 PBP1_mGluR_groupIII Li 49.9 73 0.0016 28.1 7.0 65 67-133 194-264 (463)
423 PF13788 DUF4180: Domain of un 49.7 90 0.002 24.1 6.7 66 72-137 4-80 (113)
424 TIGR01488 HAD-SF-IB Haloacid D 49.6 1E+02 0.0022 22.7 8.2 126 5-144 30-177 (177)
425 cd06359 PBP1_Nba_like Type I p 49.4 74 0.0016 26.2 6.6 52 80-134 167-220 (333)
426 cd08183 Fe-ADH2 Iron-containin 49.3 1E+02 0.0022 27.0 7.8 75 65-143 14-93 (374)
427 TIGR01549 HAD-SF-IA-v1 haloaci 49.2 1E+02 0.0022 22.4 7.6 65 65-135 72-143 (154)
428 PTZ00394 glucosamine-fructose- 49.1 33 0.00071 33.0 5.1 46 104-149 403-451 (670)
429 PRK15138 aldehyde reductase; P 49.0 81 0.0017 28.0 7.2 74 65-141 22-101 (387)
430 PRK06683 hypothetical protein; 49.0 82 0.0018 22.5 6.0 55 92-149 17-74 (82)
431 cd06283 PBP1_RegR_EndR_KdgR_li 48.8 68 0.0015 24.6 6.0 38 91-128 166-203 (267)
432 PRK06975 bifunctional uroporph 48.4 16 0.00035 35.0 2.9 82 58-142 10-97 (656)
433 PF12813 XPG_I_2: XPG domain c 48.3 26 0.00056 29.6 3.8 41 66-116 10-53 (246)
434 COG2086 FixA Electron transfer 48.2 32 0.00068 29.9 4.4 64 66-135 46-120 (260)
435 PRK05265 pyridoxine 5'-phospha 48.1 20 0.00043 31.1 3.1 47 110-156 110-156 (239)
436 PRK13520 L-tyrosine decarboxyl 48.0 73 0.0016 26.4 6.4 74 56-135 107-188 (371)
437 PRK10725 fructose-1-P/6-phosph 47.8 72 0.0016 23.9 5.9 68 62-135 92-168 (188)
438 cd08171 GlyDH-like2 Glycerol d 47.7 68 0.0015 27.7 6.4 77 65-143 14-96 (345)
439 TIGR02247 HAD-1A3-hyp Epoxide 47.7 52 0.0011 25.4 5.2 20 65-84 102-121 (211)
440 PRK08811 uroporphyrinogen-III 47.6 36 0.00079 28.7 4.6 70 63-136 151-229 (266)
441 TIGR01553 formate-DH-alph form 47.6 30 0.00065 35.0 4.7 48 101-149 220-272 (1009)
442 PRK08248 O-acetylhomoserine am 47.5 86 0.0019 28.3 7.2 68 55-130 105-183 (431)
443 cd00368 Molybdopterin-Binding 47.4 36 0.00077 28.5 4.5 47 102-149 156-207 (374)
444 PRK13903 murB UDP-N-acetylenol 47.4 21 0.00045 32.2 3.3 34 103-136 33-66 (363)
445 cd06384 PBP1_NPR_B Ligand-bind 47.3 56 0.0012 28.0 5.8 62 64-129 167-229 (399)
446 PRK10725 fructose-1-P/6-phosph 47.2 52 0.0011 24.7 5.0 45 86-134 143-187 (188)
447 PRK12361 hypothetical protein; 47.1 87 0.0019 28.8 7.3 74 70-147 243-317 (547)
448 PRK07324 transaminase; Validat 47.0 37 0.00081 29.1 4.7 75 55-135 106-193 (373)
449 smart00115 CASc Caspase, inter 46.9 40 0.00088 27.9 4.7 38 42-84 12-54 (241)
450 TIGR00509 bisC_fam molybdopter 46.9 30 0.00064 33.1 4.4 48 101-149 166-227 (770)
451 PRK00861 putative lipid kinase 46.7 93 0.002 26.0 6.9 53 92-146 23-76 (300)
452 PRK08508 biotin synthase; Prov 46.7 77 0.0017 26.8 6.4 66 88-153 74-139 (279)
453 TIGR00250 RNAse_H_YqgF RNAse H 46.6 39 0.00084 25.9 4.2 44 102-145 24-72 (130)
454 COG0241 HisB Histidinol phosph 46.5 1.2E+02 0.0026 25.0 7.4 81 67-147 41-144 (181)
455 TIGR00246 tRNA_RlmH_YbeA rRNA 46.4 1.5E+02 0.0032 23.6 8.2 79 74-152 32-123 (153)
456 cd01464 vWA_subfamily VWA subf 46.4 46 0.00099 25.3 4.7 43 104-146 109-160 (176)
457 TIGR01523 ATPase-IID_K-Na pota 46.4 79 0.0017 32.1 7.4 34 116-149 735-769 (1053)
458 cd00858 GlyRS_anticodon GlyRS 46.3 1.1E+02 0.0025 22.2 7.3 40 94-135 47-87 (121)
459 cd02070 corrinoid_protein_B12- 46.3 82 0.0018 25.2 6.3 64 65-135 102-173 (201)
460 TIGR03436 acidobact_VWFA VWFA- 46.3 98 0.0021 25.6 6.9 34 102-135 164-203 (296)
461 PRK07050 cystathionine beta-ly 46.2 74 0.0016 28.1 6.5 71 55-135 106-187 (394)
462 cd03132 GATase1_catalase Type 46.2 13 0.00028 27.3 1.6 72 64-135 19-104 (142)
463 PRK14652 UDP-N-acetylenolpyruv 46.1 23 0.00049 30.8 3.2 34 103-136 36-69 (302)
464 PF07085 DRTGG: DRTGG domain; 46.0 48 0.001 23.6 4.5 54 73-135 41-94 (105)
465 PF11495 Regulator_TrmB: Archa 46.0 58 0.0012 26.6 5.4 48 88-135 9-58 (233)
466 cd08179 NADPH_BDH NADPH-depend 45.9 1.3E+02 0.0028 26.3 7.9 69 75-143 25-99 (375)
467 PF13519 VWA_2: von Willebrand 45.9 89 0.0019 22.3 5.9 44 93-136 88-136 (172)
468 PRK14988 GMP/IMP nucleotidase; 45.9 1.1E+02 0.0025 24.5 7.1 28 57-84 92-120 (224)
469 cd06322 PBP1_ABC_sugar_binding 45.8 1.4E+02 0.003 23.1 7.5 66 66-133 143-210 (267)
470 PRK06225 aspartate aminotransf 45.7 48 0.001 28.1 5.1 75 55-135 109-197 (380)
471 cd08190 HOT Hydroxyacid-oxoaci 45.6 1E+02 0.0022 27.5 7.4 76 65-141 14-96 (414)
472 cd06301 PBP1_rhizopine_binding 45.5 1.4E+02 0.003 23.2 7.3 36 92-128 172-208 (272)
473 cd06310 PBP1_ABC_sugar_binding 45.3 1.4E+02 0.0031 23.1 7.5 23 105-127 185-207 (273)
474 PTZ00295 glucosamine-fructose- 45.3 40 0.00086 31.9 4.9 48 103-150 370-420 (640)
475 PF02844 GARS_N: Phosphoribosy 45.2 29 0.00063 26.1 3.3 26 111-136 47-72 (100)
476 cd03013 PRX5_like Peroxiredoxi 45.1 1.1E+02 0.0023 23.5 6.5 58 90-150 53-112 (155)
477 PF12745 HGTP_anticodon2: Anti 45.0 27 0.00058 30.2 3.5 46 61-111 21-66 (273)
478 cd02069 methionine_synthase_B1 44.9 99 0.0022 25.5 6.7 71 65-142 108-185 (213)
479 PRK05764 aspartate aminotransf 44.9 68 0.0015 27.1 5.9 75 55-135 117-204 (393)
480 PF03129 HGTP_anticodon: Antic 44.8 98 0.0021 21.0 7.1 59 75-135 3-62 (94)
481 cd00858 GlyRS_anticodon GlyRS 44.6 58 0.0013 23.8 4.8 44 63-113 45-88 (121)
482 TIGR00466 kdsB 3-deoxy-D-manno 44.6 67 0.0014 26.3 5.6 50 81-133 15-66 (238)
483 TIGR00179 murB UDP-N-acetyleno 44.5 25 0.00053 30.1 3.2 34 103-136 13-46 (284)
484 PF08645 PNK3P: Polynucleotide 44.3 1.2E+02 0.0025 23.7 6.7 77 58-135 31-127 (159)
485 cd08178 AAD_C C-terminal alcoh 44.3 82 0.0018 27.8 6.5 69 75-144 23-97 (398)
486 PRK09456 ?-D-glucose-1-phospha 44.2 75 0.0016 24.6 5.6 22 63-84 90-111 (199)
487 cd02430 PTH2 Peptidyl-tRNA hyd 44.2 88 0.0019 23.8 5.8 36 100-135 46-82 (115)
488 cd08173 Gro1PDH Sn-glycerol-1- 44.1 1.5E+02 0.0033 25.4 8.0 66 76-144 28-97 (339)
489 COG0854 PdxJ Pyridoxal phospha 44.1 31 0.00068 30.1 3.7 78 65-156 77-154 (243)
490 cd01480 vWA_collagen_alpha_1-V 44.0 1.2E+02 0.0027 23.3 6.8 60 85-145 89-161 (186)
491 cd08197 DOIS 2-deoxy-scyllo-in 43.9 1.2E+02 0.0026 26.8 7.4 76 66-143 15-102 (355)
492 PRK10530 pyridoxal phosphate ( 43.8 38 0.00083 27.0 4.0 40 111-150 197-240 (272)
493 PRK08175 aminotransferase; Val 43.2 97 0.0021 26.6 6.6 73 55-130 117-201 (395)
494 PTZ00287 6-phosphofructokinase 43.0 59 0.0013 34.7 6.1 70 66-135 892-964 (1419)
495 PRK13057 putative lipid kinase 43.0 1.1E+02 0.0025 25.4 6.9 82 65-152 18-100 (287)
496 PF13460 NAD_binding_10: NADH( 43.0 22 0.00047 26.5 2.3 74 60-135 9-99 (183)
497 cd01465 vWA_subgroup VWA subgr 42.9 52 0.0011 24.1 4.4 45 101-145 95-151 (170)
498 PRK05752 uroporphyrinogen-III 42.8 55 0.0012 26.8 4.9 67 60-129 88-156 (255)
499 cd01454 vWA_norD_type norD typ 42.6 1.1E+02 0.0024 23.1 6.2 35 102-136 103-152 (174)
500 CHL00194 ycf39 Ycf39; Provisio 42.6 41 0.00088 28.0 4.1 69 62-132 13-107 (317)
No 1
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=99.50 E-value=1.3e-13 Score=102.71 Aligned_cols=87 Identities=30% Similarity=0.370 Sum_probs=79.3
Q ss_pred CCcHHHHHhhceEEEEec-----CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC--
Q 045172 63 YGFADELKRAWFWVRMVL-----VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-- 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~-----dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-- 135 (157)
-.+..+|++.||.|..++ ..++++|++|..+|++.+..++++++||||.|+||+++++.+|++|.+++|+|-.
T Consensus 55 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~ 134 (149)
T cd06167 55 RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAK 134 (149)
T ss_pred HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCcc
Confidence 456789999999999998 4568999999999999999889999999999999999999999999999999986
Q ss_pred CchHHHhhhhcccc
Q 045172 136 SDGALKRIANAFFS 149 (157)
Q Consensus 136 ~~~~L~r~AD~~fs 149 (157)
...+|.+.||-+++
T Consensus 135 ~s~~L~~~~d~f~~ 148 (149)
T cd06167 135 TSRELRKAADRFID 148 (149)
T ss_pred ChHHHHHhCCcccc
Confidence 66899999996654
No 2
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=99.48 E-value=1.1e-13 Score=111.02 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=76.9
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC--CchHHH
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM--SDGALK 141 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~--~~~~L~ 141 (157)
+|...|++.||.+..+. .+.|++|.-++|+++++..+|++||||.|+||++++..+||+|.+++|||-. ++.+|.
T Consensus 70 ~l~~~l~~~Gf~pv~~k---G~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~ 146 (160)
T TIGR00288 70 KLIEAVVNQGFEPIIVA---GDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQ 146 (160)
T ss_pred HHHHHHHHCCceEEEec---CcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHH
Confidence 35678999999987653 3999999999999998899999999999999999999999999999999943 778999
Q ss_pred hhhhcccchhh
Q 045172 142 RIANAFFSWSD 152 (157)
Q Consensus 142 r~AD~~fsW~e 152 (157)
+.||-|+.-.|
T Consensus 147 ~acd~FI~L~~ 157 (160)
T TIGR00288 147 NSADIAIILGE 157 (160)
T ss_pred HhcCeEEeCCC
Confidence 99999986543
No 3
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=99.43 E-value=6.4e-13 Score=97.15 Aligned_cols=86 Identities=30% Similarity=0.408 Sum_probs=62.0
Q ss_pred cHHHHHhhceEEEEecC------CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEc--CCC
Q 045172 65 FADELKRAWFWVRMVLV------KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVG--DMS 136 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d------kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVG--d~~ 136 (157)
+-..|++.|+.|..++. ..+++|+.|..+|++.+.+...+.+||||.|+||+++++.++++|.++.|+| +..
T Consensus 52 ~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~~ 131 (146)
T PF01936_consen 52 FQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDSA 131 (146)
T ss_dssp HHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGGS
T ss_pred HHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCCC
Confidence 45678999999988865 5679999999999999977778999999999999999999999999999999 336
Q ss_pred chHHHhhhhcccch
Q 045172 137 DGALKRIANAFFSW 150 (157)
Q Consensus 137 ~~~L~r~AD~~fsW 150 (157)
..+|.+.||-+++-
T Consensus 132 s~~L~~~ad~f~~~ 145 (146)
T PF01936_consen 132 SEALRSAADEFISI 145 (146)
T ss_dssp -HHHHHHSSEEEE-
T ss_pred CHHHHHhcCEEEeC
Confidence 79999999998863
No 4
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=9.6e-07 Score=70.76 Aligned_cols=88 Identities=23% Similarity=0.279 Sum_probs=73.2
Q ss_pred cHHHHHhhceEEEEecCCCc--------cHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-
Q 045172 65 FADELKRAWFWVRMVLVKPQ--------DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM- 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq--------AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~- 135 (157)
+-.+++.-|+-|.+.+-++- .=|+-+--+|+..+++-.+|++||||-|.||.++++.|+++|.+|+|+|-+
T Consensus 65 ~~~~~~~~g~~v~~~~~~~~~~~~~~k~~vDv~la~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 65 NEYELRSDGFTVVTSNLDGFTDLRITKGDVDVELAVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEP 144 (181)
T ss_pred cHHHHhhcCcEEEeccccccCcccccccCcchhhHHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCC
Confidence 33488888888888654222 347888889999998889999999999999999999999999999999987
Q ss_pred -CchHHHhhhhcccchhh
Q 045172 136 -SDGALKRIANAFFSWSD 152 (157)
Q Consensus 136 -~~~~L~r~AD~~fsW~e 152 (157)
+..+|++.||-+..-..
T Consensus 145 ~~s~~L~~~aD~~i~L~~ 162 (181)
T COG1432 145 MTSSDLRNAADYYIDLKS 162 (181)
T ss_pred cCHHHHHHhhcceEEchh
Confidence 56899999998875443
No 5
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=96.24 E-value=0.019 Score=44.62 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=55.2
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+|+..+++..|+.+.++......+ .....+.+.+...++|.+++++.+.+..++++.+.+.|...|+||-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~ 89 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSP--DLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPG 89 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCch--HHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecC
Confidence 688889999999988874433322 26667777666789999999987655678899999999999999854
No 6
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=96.22 E-value=0.035 Score=39.34 Aligned_cols=77 Identities=19% Similarity=0.138 Sum_probs=54.7
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALK 141 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~ 141 (157)
++.-|.+.|..+..+++- .........+ ..-+|++++|-. .+..++++.|+++|.++|+|.+.....+.
T Consensus 31 ~~~~l~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 31 LAYKLLRLGKPVVLLSDP------HLQLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred HHHHHHHcCCceEEecCH------HHHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 455677888888886441 1111222223 234889999854 44777889999999999999998778999
Q ss_pred hhhhcccc
Q 045172 142 RIANAFFS 149 (157)
Q Consensus 142 r~AD~~fs 149 (157)
+.+|..|.
T Consensus 103 ~~~d~~i~ 110 (139)
T cd05013 103 KLADIVLL 110 (139)
T ss_pred HhcCEEEE
Confidence 99998774
No 7
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=96.00 E-value=0.043 Score=42.85 Aligned_cols=70 Identities=9% Similarity=-0.035 Sum_probs=53.5
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..+.... |.....+.++.+...++|.|++.+.+++ ..++++.+.++|+..|.++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGG---DDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVD 89 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCC---CHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCC
Confidence 467889999999998875433 3344445555555789999999876654 578899999999999999875
No 8
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=95.66 E-value=0.068 Score=41.39 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+........ .+-...+.+.+.+.++|++++++.+.+ ..+++.+++.|..+|++|..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~~~~ipvv~~~~~ 87 (259)
T cd01542 19 KGILAALYENGYQMLLMNTNFS---IEKEIEALELLARQKVDGIILLATTIT-DEHREAIKKLNVPVVVVGQD 87 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC---HHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHhcCCCCEEEEecc
Confidence 6788899999999988755443 233333334444789999999987644 57888889999999999865
No 9
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=95.62 E-value=0.022 Score=41.04 Aligned_cols=78 Identities=10% Similarity=0.157 Sum_probs=55.8
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALK 141 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~ 141 (157)
++..|.+.|..+....+.- .+. +....+ ..=|+++++|- ..+..++++.|+++|.++|+|-+..+..|.
T Consensus 18 ~~~~l~~~g~~~~~~~~~~-----~~~-~~~~~~--~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 18 IAATLSSTGTPAFFLHPTE-----ALH-GDLGMV--TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred HHHHhhcCCCceEEcccch-----hhc-cccCcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 3445567788887764321 111 111112 23488999984 478999999999999999999998778999
Q ss_pred hhhhcccch
Q 045172 142 RIANAFFSW 150 (157)
Q Consensus 142 r~AD~~fsW 150 (157)
+.||..|..
T Consensus 90 ~~ad~~l~~ 98 (128)
T cd05014 90 KLSDVVLDL 98 (128)
T ss_pred hhCCEEEEC
Confidence 999998865
No 10
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=95.60 E-value=0.062 Score=42.23 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=50.2
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
|+..+++..|+.+..+.-.++ + ...+.+++...++|++++++.+.+ ...++.+.+.|..+|++|-.
T Consensus 31 gi~~~~~~~g~~~~v~~~~~~--~---~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 31 GIADALAERGYDLLLSFVSSP--D---RDWLARYLASGRADGVILIGQHDQ-DPLPERLAETGLPFVVWGRP 96 (275)
T ss_pred HHHHHHHHcCCEEEEEeCCch--h---HHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECCc
Confidence 567889999999888755444 1 245556665689999999987654 56789999999999999754
No 11
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=95.59 E-value=0.071 Score=43.81 Aligned_cols=69 Identities=14% Similarity=0.100 Sum_probs=55.5
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
|+..+++..|+.+.+.+.. .|.+...++.+.|.+.++|+|++++.+++ ..+.++.+++.|...|+++..
T Consensus 19 ~i~~~a~~~g~~v~~~~~~---~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~~ 88 (302)
T TIGR02634 19 IFVAAAESLGAKVFVQSAN---GNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDRL 88 (302)
T ss_pred HHHHHHHhcCCEEEEEeCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEecCc
Confidence 7788999999999776432 24555666777777899999999998765 578999999999999999765
No 12
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=95.57 E-value=0.073 Score=42.00 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=53.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+-.+++..|+.|.+..... .|..-...+++.|...++|.+++++.+.+ +.+.++.++++|..+|+++..
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPET--FDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAG 91 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCC
Confidence 477788888999998875433 23344445555555789999999997765 678899999999999999864
No 13
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=95.38 E-value=0.093 Score=40.95 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCcHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~tVVVGd~ 135 (157)
-|+..+++..|+.+.++ +..... ..-...+.+++ +.++|+|++.+-|+ ...++++++.+.|+.+|.+...
T Consensus 18 ~g~~~~a~~~g~~~~~~~~~~~d~--~~q~~~i~~~i-~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIVFDAQNDP--EEQIEQIEQAI-SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHHHHTCEEEEEEESTTTH--HHHHHHHHHHH-HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCH--HHHHHHHHHHH-HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 46778899999999997 333331 33334455555 79999999996665 6889999999999999998765
No 14
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=95.29 E-value=0.11 Score=40.76 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=52.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++-|+.|.+..... |.+......+.+-..++|+|++.+.+++ +.+.++.+.+.|...|+++..
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~---~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQG---DLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDSS 89 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCC---CHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEecCC
Confidence 588899999999987764332 3333344455455799999999876654 357889999999999999864
No 15
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=95.25 E-value=0.085 Score=43.06 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=53.5
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhcc--CcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKR--RFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r--~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..+.... |..-...+.+.+.+. ++|+|++.+.++....+++.+.++|+.+|+++..
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~---~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAER---DRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFLVNSG 91 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCC---CHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEEEecC
Confidence 578888999999998874322 344444555555578 9999999876655677899999999999999864
No 16
>PRK15482 transcriptional regulator MurR; Provisional
Probab=95.12 E-value=0.095 Score=43.56 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=66.0
Q ss_pred hHHHHHHHHhhcCcccC--CC----------cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC-
Q 045172 46 MEKNKMAASAILTPKVG--YG----------FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD- 112 (157)
Q Consensus 46 ~~kY~~Aar~~l~pkvg--yg----------la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD- 112 (157)
.+.+++++..+...+.- || ++--|.+.|..|....|.. +...+...+ +.+ |+++++|-.
T Consensus 122 ~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~------~~~~~~~~~-~~~-Dv~i~iS~sg 193 (285)
T PRK15482 122 YARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTH------VQATVSQAL-KKG-DVQIAISYSG 193 (285)
T ss_pred HHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHh------HHHHHHhcC-CCC-CEEEEEeCCC
Confidence 45677777766555422 22 2344667898888755332 222223333 333 899999954
Q ss_pred --cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhccc
Q 045172 113 --SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 113 --sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~f 148 (157)
.+-..+++.|+++|+++|.|-|.....|.+.||.-|
T Consensus 194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l 231 (285)
T PRK15482 194 SKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTL 231 (285)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEE
Confidence 677788999999999999999997789999999887
No 17
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=95.12 E-value=0.086 Score=42.18 Aligned_cols=72 Identities=10% Similarity=0.113 Sum_probs=49.6
Q ss_pred CCcHHHHHhhceEEEEec--CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVL--VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~--dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+...+ ..++ .|..-.....+.+..+++|.|++.+++....+.++.+.+.+...|+++|.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~~~p~V~i~~~ 93 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPG-IDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLASGKTKIILQNI 93 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcc-cCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhCCCCeEEEeCC
Confidence 478899999998877653 2221 12233334444444799999999876655678888888888888888663
No 18
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=95.05 E-value=0.13 Score=40.20 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..+.... |.....++.+.+.++++|++++++.+.+- ..++.+.+.|...|+++..
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~---~~~~~~~~i~~~~~~~vdgii~~~~~~~~-~~~~~~~~~~ipvV~~~~~ 87 (268)
T cd06270 19 SGVESVARKAGKHLIITAGHH---SAEKEREAIEFLLERRCDALILHSKALSD-DELIELAAQVPPLVLINRH 87 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---chHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhCCCCEEEEecc
Confidence 577888999999999875433 34555666666668999999998854332 2388899999999999864
No 19
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=95.01 E-value=0.15 Score=39.44 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=51.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.|.......+. .-...+.+.+-..++|.+++.+.+.+...+++.+++.|..+|+++..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~ 88 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDA---EREADAVETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYND 88 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCH---HHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEecc
Confidence 46778889999999987554332 22223333344689999999887766567889999999999999754
No 20
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=94.94 E-value=0.11 Score=44.60 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=53.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+.+..|+.|... .|...|.+-+..+++.|-.+++|.||+++-|++ +.+.+++|+++|..+|.+...
T Consensus 43 ~Gi~~aa~~~G~~v~~~--~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~ 114 (336)
T PRK15408 43 NGAKEAGKELGVDVTYD--GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD 114 (336)
T ss_pred HHHHHHHHHhCCEEEEE--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 47778889999999763 244445555555555555899999999885544 689999999999999999765
No 21
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.91 E-value=0.16 Score=39.94 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=50.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.|+..+++..|+.|-.....-+ ..-...+.+.|...+++++++++.+.+-..+++.++++|...|+++...
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~~ 89 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLND---PERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDM 89 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC---hHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEeccc
Confidence 4678889999999876533222 2223333344446899999999876665678889999999999998653
No 22
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=94.91 E-value=0.15 Score=40.49 Aligned_cols=72 Identities=8% Similarity=0.076 Sum_probs=51.5
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+-+...... .|.....+.++.+.+.++|.|++++-+.+....+..++..|..+|+++..
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~~~ 90 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGY-PNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIALVND 90 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEeccC
Confidence 5788999999999988743211 12223334444444789999999987776544678899999999999754
No 23
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.79 E-value=0.12 Score=41.41 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=52.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..+..... |.....++++.+...++|.||+.+.|.+ ..+++..++++|...|.++..
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 90 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQF--DPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFMDNV 90 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCC--CHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHcCCcEEEecCC
Confidence 5778899999999876644332 2333334444444789999999887765 478899999999999999875
No 24
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=94.74 E-value=0.18 Score=41.03 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCcHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.+.|+.|..+ +...+ .....++.+.+...++|.|++++-+++ +.++++.+++.|..+|.|+..
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d---~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v~~~ 90 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTAD---AAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCC---HHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57888999999999876 43333 333345555554789999999986655 778899999999999999864
No 25
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.74 E-value=0.17 Score=39.30 Aligned_cols=69 Identities=12% Similarity=0.175 Sum_probs=51.2
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..... .. +......+.+.+...++|+|++++.+.+ ..+++.+.+.|..+|.++..
T Consensus 24 ~~~~~~~~~~g~~~~~~~~-~~--~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~ 92 (270)
T cd06294 24 RGISAVANENGYDISLATG-KN--EEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEEKFPFVVIGKP 92 (270)
T ss_pred HHHHHHHHHCCCEEEEecC-CC--cHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhcCCCEEEECCC
Confidence 5778889999999876532 22 2334556666665677999999975544 57788999999999999864
No 26
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=94.71 E-value=0.074 Score=37.89 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=40.0
Q ss_pred CcceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhccc
Q 045172 102 RFGCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 102 ~v~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~f 148 (157)
.-+|++++|- ..+..+.++.|+++|.++|+|-+..+..+.+.||.-|
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l 102 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVL 102 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE
T ss_pred ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEE
Confidence 4489999994 3466778899999999999999987789999999877
No 27
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.66 E-value=0.16 Score=40.54 Aligned_cols=70 Identities=11% Similarity=0.016 Sum_probs=53.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.......+ ..-..+..+.+..+++|.|++.+.|++ ..+.++.+.+.|..+|+++..
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d---~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALD---AVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCC---HHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCC
Confidence 5778889999999998754433 333334444444799999999987766 467889999999999999864
No 28
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=94.65 E-value=0.2 Score=40.96 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=53.7
Q ss_pred CCcHHHHHh--hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKR--AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrR--AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.. .|+.+...+.. .|.+-+...++.+...+++.|++.+.|++ +.+.++.|++.|..+|.++..
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~---~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAK---NNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCC---CCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 477788888 88888776432 34555566666555889999999887766 678999999999999999754
No 29
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=94.60 E-value=0.18 Score=39.98 Aligned_cols=69 Identities=16% Similarity=0.082 Sum_probs=49.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch-HHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-~~~lr~Arer~l~tVVVGd~ 135 (157)
-|+..+++..|+.+..+... +. +. ....+..++ ..++|.|++.+.|++. .++++.+.+.|..+|+++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-~~-~~-~~~~i~~~~-~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVP-DG-EK-VLSAIDNLG-AQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHcCCEEEEccCC-CH-HH-HHHHHHHHH-HcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEecCC
Confidence 36778889999998876332 32 21 223333344 6899999999988765 45789999999999999854
No 30
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=94.57 E-value=0.17 Score=39.26 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=51.6
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++.|+.|.+++.. . |..-...+.+.+.+.++|.|++.+.+.+- ..++.++++|..+|++|..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~ipvV~~~~~ 87 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSD-E--NPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLLKRGIPVVFVDRE 87 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCC-C--CHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHHhCCCCEEEEecc
Confidence 47888899999999987542 1 23333444555558899999998876553 5689999999999999875
No 31
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=94.51 E-value=0.18 Score=40.76 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=52.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch-HHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++.|+.+-......+ ..-.....+.+...+++.+++.+.+++. ...+..+.+.|+.+|.++..
T Consensus 46 ~~i~~~~~~~G~~~~~~~~~~d---~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 116 (295)
T PRK10653 46 DGAQKEADKLGYNLVVLDSQNN---PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRG 116 (295)
T ss_pred HHHHHHHHHcCCeEEEecCCCC---HHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEccC
Confidence 6888999999999987644333 2333444444547899999999877655 57899999999999999864
No 32
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=94.51 E-value=0.17 Score=41.87 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=54.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++.||.+-......+ .| .. +.+++|.++++|.|++.|...++..+.+.++. +.-.|+++..
T Consensus 21 ~gIe~~a~~~Gy~l~l~~t~~~-~~--~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~ 88 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCNTGDD-EE--KE-EYIELLLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRY 88 (279)
T ss_dssp HHHHHHHHHTTCEEEEEEETTT-HH--HH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-
T ss_pred HHHHHHHHHcCCEEEEecCCCc-hH--HH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEec
Confidence 5788999999999988655544 22 22 55556668999999999999998888888877 9999999987
No 33
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=94.49 E-value=0.23 Score=38.93 Aligned_cols=70 Identities=9% Similarity=0.091 Sum_probs=50.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc----hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD----FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD----F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+-+.... .. .....+..+.|-..++|++++.+.+++ ..+.++.+.+.|..+|.++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-~~--~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~~ 92 (273)
T cd01541 19 RGIESVLSEKGYSLLLASTN-ND--PERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINAS 92 (273)
T ss_pred HHHHHHHHHcCCEEEEEeCC-CC--HHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEecC
Confidence 57889999999999765432 22 223333444444789999999876543 457889999999999999854
No 34
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.47 E-value=0.23 Score=38.74 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 62 GYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 62 gygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
-.|+..+++..|+.+.+..... |........+.+.++++|++++.+.+++ +.+.++.+++.|..+|.++..
T Consensus 18 ~~~i~~~~~~~g~~~~i~~~~~---~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~ 89 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQ---DLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVDIA 89 (267)
T ss_pred HHHHHHHHHhcCCEEEEecCCC---CHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEEccc
Confidence 3678889999999997643222 3334444444444789999999876654 678899999999999999754
No 35
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=94.45 E-value=0.17 Score=39.98 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=54.1
Q ss_pred ccCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 60 KVGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 60 kvgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.+..|+..++++.|+.+..+.+.. .|........+.+..+++|.+++.+.+.+ ..++++.+.+ +..+|.+|..
T Consensus 15 ~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~~~~ 88 (271)
T cd06314 15 IAEAGVKAAGKELGVDVEFVVPQQ--GTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITTDSD 88 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCC--CCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEecCC
Confidence 345788999999999998874222 13333445555555899999999987654 5688999988 9999999864
No 36
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=94.42 E-value=0.17 Score=39.83 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 62 GYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 62 gygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
..|+..+++..|+.+..+..- ...|......+.+.+-..+++++|+++.+++ ....+..+++.|..+|.+|..
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 18 KEGYENEAKKLGVSVDIQAAP-SEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHHHHHHHHHhCCeEEEEccC-CCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCC
Confidence 368889999999998876321 1112333344555554689999999876654 457789999999999999864
No 37
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=94.42 E-value=0.25 Score=39.76 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=53.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.++....+ ..-...+.+.+...++|.|++++.+++ ..+.++.+++.|..+|+++..
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGD---PAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCC---HHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCC
Confidence 5888999999999998755332 222334444444789999999986655 578999999999999999765
No 38
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=94.40 E-value=0.17 Score=40.86 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=50.0
Q ss_pred CCcHHHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.+.|++.-++. ... .|.+-+...++.+-..++|.||+++-|++ ....++.|+++|+.+|+++..
T Consensus 18 ~gi~~~a~~~g~~~~i~~~~~~--~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 18 KGAEEAAKELGSVYIIYTGPTG--TTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred HHHHHHHHHhCCeeEEEECCCC--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 478888999995433332 222 23344445556665799999999987654 567899999999999999854
No 39
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.27 E-value=0.3 Score=37.79 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=51.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++.|+.+...+... |......+.+.+.+.++|.+++++.+++-.+.++.+.+.|+.+|.++..
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~---~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~ 88 (268)
T cd06289 19 AGLEEVLEEAGYTVFLANSGE---DVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVARE 88 (268)
T ss_pred HHHHHHHHHcCCeEEEecCCC---ChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEecc
Confidence 466778888899887654332 2344455555565789999999986654345889999999999999754
No 40
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=94.20 E-value=0.29 Score=37.79 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=50.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch-HHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.+.+...+. .-...+.+.+...+++.+++++.+++. .+.++.+++.|+..|.++..
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~~ 89 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDA---AKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDRE 89 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCH---HHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEccC
Confidence 47888999999999876554332 222233333336789999999877665 36789999999999999875
No 41
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=94.17 E-value=0.28 Score=40.18 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=52.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+-++...+. ..-.....+.|.+.++|.|++++.+......+..+++.|+.+|.++..
T Consensus 84 ~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~ 153 (342)
T PRK10014 84 AGLTEALEAQGRMVFLLQGGKD---GEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASRA 153 (342)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC---HHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEecC
Confidence 4677889999998877654433 222334455555789999999987666678899999999999999764
No 42
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=94.15 E-value=0.11 Score=37.27 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=51.3
Q ss_pred cHHHHHhhc-eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHH
Q 045172 65 FADELKRAW-FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGAL 140 (157)
Q Consensus 65 la~eLrRAG-v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L 140 (157)
++.-|.+.| ..+...+ |. +... . ...+ ..-|+++.+|-. .+-.++++.|+++|.++|.|-+..+..|
T Consensus 17 ~~~~l~~~~~~~~~~~~--~~--~~~~--~-~~~~--~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 17 AKYLLERLAGIPVEVEA--AS--EFRY--R-RPLL--DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred HHHHHHHhcCCceEEEe--hh--Hhhh--c-CCCC--CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 445567776 7777654 22 1111 1 1112 345778888854 4566778899999999999999877899
Q ss_pred Hhhhhccc
Q 045172 141 KRIANAFF 148 (157)
Q Consensus 141 ~r~AD~~f 148 (157)
.+.||..|
T Consensus 88 a~~ad~~l 95 (126)
T cd05008 88 AREADYVL 95 (126)
T ss_pred HHhCCEEE
Confidence 99999887
No 43
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.15 E-value=0.26 Score=38.57 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=52.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..+.... .-|.+....+.+.+...++|.+++++.+.+ ..++++.+++.|...|.++..
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPAS-ETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred HHHHHHHHHcCCEEEEecCcc-CCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEecCC
Confidence 678899999999999874211 123444555565555789999999875543 357889999999999999764
No 44
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.09 E-value=0.33 Score=37.76 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=51.2
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch-HHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.+.|+.+.+.+.. . |.......++.+...++|.+++.+.+++. .+.++.++++|..+|.++..
T Consensus 20 ~g~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~~ 90 (275)
T cd06317 20 KAFQAAAEEDGVEVIVLDAN-G--DVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSN 90 (275)
T ss_pred HHHHHHHHhcCCEEEEEcCC-c--CHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEeCCC
Confidence 46777888899999887543 2 23333344444446899999999877664 68889999999999999764
No 45
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=93.98 E-value=0.34 Score=38.08 Aligned_cols=70 Identities=9% Similarity=0.058 Sum_probs=50.3
Q ss_pred CCcHHHHHhh-ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRA-WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRA-Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.+. |+.+.+... +...+ -...+++.+.+.++|.|++++.+++ +.+.+..+.+.|+..|+++..
T Consensus 19 ~~i~~~~~~~~g~~~~~~~~-~~~~~--~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 19 DEIQREASNYPDVELIIADA-ADDNS--KQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHHHHhcCCcEEEEEcC-CCCHH--HHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEeCCC
Confidence 5778888885 998877533 33222 2223334444789999999987754 578889999999999999864
No 46
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=93.98 E-value=0.36 Score=37.53 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+-...+.- |......+.+.+.+.++|++++++.++. ..+++.+.+.|+..|.++..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~l~~~~iPvv~~~~~ 87 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGY---DLDREYAQARKLLERGVDGLALIGLDHS-PALLDLLARRGVPYVATWNY 87 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEEcCC
Confidence 578999999999988754332 2333445555555789999999877653 57788999999999999864
No 47
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.94 E-value=0.27 Score=39.38 Aligned_cols=70 Identities=11% Similarity=0.008 Sum_probs=51.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+-......+.++ .....+.+..+++|+|+|++.+.+ ..+.+..+++.+...|+++..
T Consensus 20 ~gi~~~a~~~gy~~~~~~~~~~~~~---~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~d~~ 90 (280)
T cd06315 20 EGVREAAKAIGWNLRILDGRGSEAG---QAAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGWHAG 90 (280)
T ss_pred HHHHHHHHHcCcEEEEECCCCCHHH---HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 5778899999999877644333222 234444455799999999987755 356778888899999999864
No 48
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.93 E-value=0.35 Score=37.79 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=53.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+|+..+++..|+.+.+.+.. .|......+.+.+...++|.+++.+.+++ ...++.+.+.|..+|+++..
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~iPvv~~~~~ 87 (265)
T cd06285 19 EGIEEAAAERGYSTFVANTG---DNPDAQRRAIEMLLDRRVDGLILGDARSD-DHFLDELTRRGVPFVLVLRH 87 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHHHcCCCEEEEccC
Confidence 68899999999998664332 24455666777777899999999875544 35689999999999999875
No 49
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.91 E-value=0.34 Score=37.88 Aligned_cols=70 Identities=14% Similarity=0.018 Sum_probs=51.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc----chHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS----DFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs----DF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++.|+.+.+.+...+ ......+.+.+..+++|++++.+... .....+..+.++|..+|.||-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~ 92 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRG---GVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGR 92 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC---hHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCC
Confidence 5888999999999877544332 34445566666689999999986332 2345678889999999999854
No 50
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=93.80 E-value=0.47 Score=37.11 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=52.7
Q ss_pred CCcHHHHHh-hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch-HHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKR-AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrR-AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++. .|+.+..... .. |..-...+.+.+.+.++|.+++.+.+++. .++++.+.+.|..+|.++..
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~-~~--~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDA-KN--DVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCC-CC--CHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCC
Confidence 578888999 8999988543 22 23344444544457899999999887764 57889999999999999875
No 51
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.80 E-value=0.32 Score=37.91 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=50.8
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.......+. .....+.+.+-..++|.|++++.+.+ ...++.+.+.++.+|.|+-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~i~~~ 87 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRT---SPERQWVERLSARRTDGVILVTPELT-SAQRAALRRTGIPFVVVDPA 87 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCch---HHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcCCCCEEEEecc
Confidence 57888999999999876544332 23334444444789999999887654 36789999999999999854
No 52
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.78 E-value=0.41 Score=37.56 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=51.8
Q ss_pred CCcHHHHHh--hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCCC
Q 045172 63 YGFADELKR--AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrR--AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~~ 136 (157)
.|+..+++. .|+.+.++....+ ..-...+.+.+...++|.|++.+.|++ ..+.++.+.+.|...|+++...
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~~~ 92 (271)
T cd06321 19 KGAEAAAKKLNPGVKVTVVSADYD---LNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDVAA 92 (271)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCC---HHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecCCC
Confidence 578888899 8888877644332 223334444445789999999886654 5788899999999999998753
No 53
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.71 E-value=0.54 Score=37.04 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=50.2
Q ss_pred CCcHHHHHhh-----ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRA-----WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRA-----Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++. |+.+......- |..-..++.+.+-..++|.|++++.|++ +...++.|.++|..+|.++..
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~d~~ 94 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASN---DTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVVVDRG 94 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCC---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEEcCC
Confidence 3566667776 67777754332 2334456666554789999999986644 678899999999999999764
No 54
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=93.62 E-value=0.44 Score=36.85 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=50.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+.+....-+. .-...+.+.+...++|.+++++.+.+ ...+..+.+.|+..|++++.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvv~~~~~ 87 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSP---EREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLRAAGIPVVEIMDL 87 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCc---hhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhcCCCEEEEecC
Confidence 47788999999998876542222 22334444444789999999987655 56778888899999999875
No 55
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=93.57 E-value=0.13 Score=39.96 Aligned_cols=71 Identities=20% Similarity=0.168 Sum_probs=54.4
Q ss_pred HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHh
Q 045172 66 ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKR 142 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r 142 (157)
+..|.+.|..|..++|- . ...+ ..=|+++.+|-. .+...+++.|+++|+++|.|-+.....|.+
T Consensus 52 ~~~l~~~g~~~~~~~~~-~----------~~~~--~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~ 118 (179)
T cd05005 52 AMRLMHLGLNVYVVGET-T----------TPAI--GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAK 118 (179)
T ss_pred HHHHHhCCCeEEEeCCC-C----------CCCC--CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 34577889988887652 1 0112 345888888854 677889999999999999999987789999
Q ss_pred hhhcccc
Q 045172 143 IANAFFS 149 (157)
Q Consensus 143 ~AD~~fs 149 (157)
.||..|.
T Consensus 119 ~ad~~l~ 125 (179)
T cd05005 119 LADVVVV 125 (179)
T ss_pred hCCEEEE
Confidence 9998874
No 56
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.56 E-value=0.43 Score=37.33 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=50.5
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.+...-.+. .-...+.+.+...++|.|++.+.+++ ..++.++++|..+|+++..
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~l~~~~ipvV~~~~~ 89 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDED---EEEFELPSFLEDGKVDGIILLGGIST--EYIKEIKELGIPFVLVDHY 89 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCh---HHHHHHHHHHHHCCCCEEEEeCCCCh--HHHHHHhhcCCCEEEEccC
Confidence 46788899999998877544443 22334444444789999999997654 4589999999999999865
No 57
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=93.55 E-value=0.45 Score=36.91 Aligned_cols=68 Identities=9% Similarity=0.022 Sum_probs=47.8
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
|+..++++.|+.+..++...+ ..-...+.+.+...++|.+++.+.+.+ .++++.+.+.|...|+++..
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~l~~~~ipvV~~~~~ 87 (268)
T cd06298 20 GIDDIATMYKYNIILSNSDND---KEKELKVLNNLLAKQVDGIIFMGGKIS-EEHREEFKRSPTPVVLAGSV 87 (268)
T ss_pred HHHHHHHHcCCeEEEEeCCCC---HHHHHHHHHHHHHhcCCEEEEeCCCCc-HHHHHHHhcCCCCEEEEccc
Confidence 567788889999988754322 222233444444689999999875433 46888888899999999864
No 58
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.52 E-value=0.43 Score=36.84 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=49.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..+....+. |. ...+..++ ..++|.+++++.+.+ ..+++.+.+.|...|.++..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~-~~--~~~i~~~~-~~~vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~ 86 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDE-DL--DAALRQLL-QYRVDGVIVTSGTLS-SELAEECRRNGIPVVLINRY 86 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCH-HH--HHHHHHHH-HcCCCEEEEecCCCC-HHHHHHHhhcCCCEEEECCc
Confidence 46788999999999887654432 32 23333334 789999999976644 25588899999999999865
No 59
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.50 E-value=0.44 Score=37.23 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=50.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch-HHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++.|+.+..+... ... .-...+.+.+...++|.+++.+.+++. ..+++.+.+.|..+|+++..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~-~~~--~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAE-NSA--KKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIADIG 89 (277)
T ss_pred HHHHHHHHhcCCeEEEecCC-CCH--HHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEEecC
Confidence 57788899999999876443 222 222233333336899999998888763 57899999999999999754
No 60
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=93.45 E-value=0.45 Score=38.82 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=50.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+-......+ ..-.....+.+..+++|+|++.+.+.+..+.+..+.+.|..+|+++-.
T Consensus 80 ~~i~~~~~~~gy~~~i~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~ 149 (327)
T TIGR02417 80 KELEQQCREAGYQLLIACSDDN---PDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVALDRS 149 (327)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC---HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEEccc
Confidence 3788889999999977644322 222334445455789999999886653456778888899999999854
No 61
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=93.38 E-value=0.23 Score=39.46 Aligned_cols=99 Identities=16% Similarity=0.061 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCcc-HHHHHHHHHHHHhhccCcceEE-EEcCC--------c--
Q 045172 47 EKNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQD-ADVLLRNYMVAMVDKRRFGCLV-VVSDD--------S-- 113 (157)
Q Consensus 47 ~kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpqA-AD~AL~~~~~~~~~~r~v~clv-LVSDD--------s-- 113 (157)
+.+.+...+.+.|.-| ..+-..|++.|+.+-.||+++.. ++..|... +..-.+-|.- .++++ +
T Consensus 63 ~~~~~~~~~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~----~~~~~i~~n~~~~~~~~~~~~kp~p~~ 138 (219)
T PRK09552 63 EEIIQFLLETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL----IPKEQIYCNGSDFSGEYITITWPHPCD 138 (219)
T ss_pred HHHHHHHHhCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh----CCcCcEEEeEEEecCCeeEEeccCCcc
Confidence 4444544455566666 56778899999999999999972 22222222 1110111101 12221 1
Q ss_pred ---------chHHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccc
Q 045172 114 ---------DFVEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFS 149 (157)
Q Consensus 114 ---------DF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fs 149 (157)
....+++......-.+|.|||+ +|-...+.||+.|.
T Consensus 139 ~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 139 EHCQNHCGCCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred ccccccCCCchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 1356666655555679999999 66666778887653
No 62
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=93.38 E-value=0.47 Score=40.08 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=53.2
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
|+-.++...|+.+.++....+ .....++.+.+.++++|.|++++.+++ +.+.++.+.+++..+|+++..
T Consensus 46 gi~~~a~~~g~~l~i~~~~~~---~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~id~~ 115 (330)
T PRK10355 46 IFVKKAESLGAKVFVQSANGN---EETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRM 115 (330)
T ss_pred HHHHHHHHcCCEEEEECCCCC---HHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCeEEEECCC
Confidence 667788889999998754333 344445555555789999999987654 678899999999999999764
No 63
>PRK09701 D-allose transporter subunit; Provisional
Probab=93.36 E-value=0.4 Score=39.59 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=51.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.++. .|...|..-.....+.+..+++|.|++.+.+++ =.+.+..+.+.|+.+|+++..
T Consensus 44 ~gi~~~a~~~g~~v~~~~-~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~ 116 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFA-SPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK 116 (311)
T ss_pred HHHHHHHHHcCCeEEEec-CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEeCCC
Confidence 678889999999998863 222223444455555555789999999886654 235577888999999999865
No 64
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=93.35 E-value=0.42 Score=37.62 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=52.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+......-+ ..-.....+.+-..++|.+++.+.+++ +.+.++.+.+.|..+|+++..
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQK---QENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRG 89 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCC---HHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEecC
Confidence 4778889999999998654332 333333343344689999999887765 578899999999999999864
No 65
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=93.10 E-value=0.5 Score=36.51 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=49.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.......+ ......+.+++...++|++++.+.+.+ ...+..+.+.+..+|+++..
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~ 91 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPD---EDPLEVYRRLVESGLVDGVIISRTRPD-DPRVALLLERGFPFVTHGRT 91 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCc---HHHHHHHHHHHHcCCCCEEEEecCCCC-ChHHHHHHhcCCCEEEECCc
Confidence 4778899999999888654333 223344555555578999999876544 34567888899999999764
No 66
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=93.06 E-value=0.42 Score=39.31 Aligned_cols=96 Identities=16% Similarity=0.036 Sum_probs=64.2
Q ss_pred hhHHHHHHHHhhcCcccC----CC--------cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC
Q 045172 45 KMEKNKMAASAILTPKVG----YG--------FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD 112 (157)
Q Consensus 45 k~~kY~~Aar~~l~pkvg----yg--------la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD 112 (157)
..++.++++..+...+-- .| ++--|.+.|..+...+|. .........+ ..=|+++.+|-.
T Consensus 114 ~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~------~~~~~~~~~~--~~~Dv~I~iS~s 185 (278)
T PRK11557 114 SEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDM------HALLATVQAL--SPDDLLLAISYS 185 (278)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCCh------HHHHHHHHhC--CCCCEEEEEcCC
Confidence 346677777766555432 22 234467889888764332 2222223333 234677777743
Q ss_pred ---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhccc
Q 045172 113 ---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 113 ---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~f 148 (157)
.+...+++.|+++|.++|+|-|.....+.+.||.-|
T Consensus 186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l 224 (278)
T PRK11557 186 GERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCL 224 (278)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEE
Confidence 455678999999999999999987789999999877
No 67
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=92.77 E-value=0.52 Score=39.40 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=43.5
Q ss_pred HHHHhhceEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEcCCcchH-HHHHHHHHcCCeEEEEcCCCchHHHhhh
Q 045172 67 DELKRAWFWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV-EVFQEATLRWLKMVVVGDMSDGALKRIA 144 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~-~~lr~Arer~l~tVVVGd~~~~~L~r~A 144 (157)
+.|+.+|+.|..+++... ..|.+ .+.+.+...+.|++ |.|.-+|. ...+..++.+.++++|-|..++.. .|
T Consensus 47 ~~i~~~g~~v~~~~~~~~~~~d~~---~~~~~l~~~~~d~v--V~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~--~~ 119 (279)
T TIGR03590 47 DLLLSAGFPVYELPDESSRYDDAL---ELINLLEEEKFDIL--IVDHYGLDADWEKLIKEFGRKILVIDDLADRPH--DC 119 (279)
T ss_pred HHHHHcCCeEEEecCCCchhhhHH---HHHHHHHhcCCCEE--EEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCc--CC
Confidence 455566666665554332 11222 24444544456644 55655544 344556678999999999854444 88
Q ss_pred hccc
Q 045172 145 NAFF 148 (157)
Q Consensus 145 D~~f 148 (157)
|+.|
T Consensus 120 D~vi 123 (279)
T TIGR03590 120 DLLL 123 (279)
T ss_pred CEEE
Confidence 9887
No 68
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=92.74 E-value=0.64 Score=36.83 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=49.8
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.+.|+.+-+...... ......+...+...++|++++.+.+.+ .+.++.+++.|..+|+++..
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~---~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~~~~iPvv~~~~~ 87 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSL---ARLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRLPTERPVVLVDAE 87 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCc---HHHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHhhcCCCEEEEccC
Confidence 5888899999999888643322 122223333344789999999997766 46778889999999999864
No 69
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=92.68 E-value=0.26 Score=45.15 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=52.6
Q ss_pred HHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhh
Q 045172 66 ADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRI 143 (157)
Q Consensus 66 a~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~ 143 (157)
-.+|+++|+ .+-.++.+|+..=. ..+...|++-+.--....+=..+++.....+-.++.|||+ +|-.-.+.
T Consensus 371 i~~L~~~Gi~~v~vvTgd~~~~a~-------~i~~~lgi~~~f~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~ 443 (536)
T TIGR01512 371 IAELKALGIEKVVMLTGDRRAVAE-------RVARELGIDEVHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAA 443 (536)
T ss_pred HHHHHHcCCCcEEEEcCCCHHHHH-------HHHHHcCChhhhhccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHh
Confidence 457888888 88888887772111 1112234432211111224466888888888899999999 87788899
Q ss_pred hhcccchh
Q 045172 144 ANAFFSWS 151 (157)
Q Consensus 144 AD~~fsW~ 151 (157)
||+.++|.
T Consensus 444 A~vgia~g 451 (536)
T TIGR01512 444 ADVGIAMG 451 (536)
T ss_pred CCEEEEeC
Confidence 99999996
No 70
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=92.65 E-value=0.78 Score=35.41 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=48.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.+...... ........+.+.+.++|++++.+.+.+- ..++.+.+.|...|+++..
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~l~~~~~~~ipvV~~~~~ 87 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNSDND---PEKEKEYLESLLAYQVDGLIVNPTGNNK-ELYQRLAKNGKPVVLVDRK 87 (267)
T ss_pred HHHHHHHHHcCCEEEEEcCCCC---HHHHHHHHHHHHHcCcCEEEEeCCCCCh-HHHHHHhcCCCCEEEEcCC
Confidence 3677778888988876544332 2333344444447899999998866553 4578889999999999875
No 71
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=92.60 E-value=0.48 Score=39.94 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=49.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+......++ .|..-.....+.+-++++|.|++++.+++ +.+.+ .+++.|+.+|.+++.
T Consensus 66 ~gi~~aa~~~G~~l~i~~~~~~-~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l-~~~~~giPvV~~~~~ 137 (343)
T PRK10936 66 YGMVEEAKRLGVDLKVLEAGGY-YNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL-ELQAANIPVIALVNG 137 (343)
T ss_pred HHHHHHHHHhCCEEEEEcCCCC-CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH-HHHHCCCCEEEecCC
Confidence 4788899999999888643211 12233334455555899999999987655 44667 889999999988654
No 72
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=92.56 E-value=0.77 Score=37.62 Aligned_cols=69 Identities=6% Similarity=-0.003 Sum_probs=48.6
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+-..+...+ ........+.+...++|.+++++.+.+ .+.++.+.+.|..+|+++|.
T Consensus 83 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~~~~~ 151 (331)
T PRK14987 83 RGIESVTDAHGYQTMLAHYGYK---PEMEQERLESMLSWNIDGLILTERTHT-PRTLKMIEVAGIPVVELMDS 151 (331)
T ss_pred HHHHHHHHHCCCEEEEecCCCC---HHHHHHHHHHHHhcCCCEEEEcCCCCC-HHHHHHHHhCCCCEEEEecC
Confidence 5788899999998876543322 222234445455789999999874433 57788888999999988764
No 73
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.45 E-value=0.92 Score=35.52 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=49.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++.|+.|....... |..-...+.+.+...++|++++++.+.+.. .++.+...+..+|+|+..
T Consensus 19 ~gi~~~~~~~gy~v~~~~~~~---~~~~~~~~i~~~~~~~~dgiii~~~~~~~~-~~~~~~~~~~pvV~i~~~ 87 (269)
T cd06293 19 DAVEEEADARGLSLVLCATRN---RPERELTYLRWLDTNHVDGLIFVTNRPDDG-ALAKLINSYGNIVLVDED 87 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHHHHCCCCEEEEeCCCCCHH-HHHHHHhcCCCEEEECCC
Confidence 578889999999997764332 334455566666689999999998665544 345566779999999964
No 74
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=92.32 E-value=0.72 Score=35.99 Aligned_cols=69 Identities=10% Similarity=0.002 Sum_probs=48.5
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+....-.. |..-...+.+.+.++++|.+++++.+.+-.. ++.+++.|..+|+++-.
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~ipvV~~~~~ 87 (264)
T cd06274 19 KRLEALARERGYQLLIACSDD---DPETERETVETLIARQVDALIVAGSLPPDDP-YYLCQKAGLPVVALDRP 87 (264)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHHHHcCCCEEEEcCCCCchHH-HHHHHhcCCCEEEecCc
Confidence 466778889999886653322 2233334555555899999999987654333 77889999999999765
No 75
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=92.25 E-value=0.31 Score=35.86 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=39.0
Q ss_pred ceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhccc
Q 045172 104 GCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 104 ~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~f 148 (157)
|+++.+|-. .+-.+.++.|+++|.+++.|-+..+..|.+.||..|
T Consensus 49 dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l 96 (120)
T cd05710 49 SVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVI 96 (120)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEE
Confidence 888888854 677788899999999999999987789999999876
No 76
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=92.08 E-value=0.27 Score=37.81 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=40.5
Q ss_pred cCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
..=|+++++|-. .+-.++++.|+++|++++.|-+.....|.+.||.-|.
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~ 129 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELR 129 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 344889999955 5566788999999999999998877899999998773
No 77
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=91.98 E-value=0.47 Score=43.49 Aligned_cols=79 Identities=16% Similarity=0.055 Sum_probs=53.2
Q ss_pred HHHHHhhc-eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhh
Q 045172 66 ADELKRAW-FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRI 143 (157)
Q Consensus 66 a~eLrRAG-v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~ 143 (157)
-.+|+..| +.+-+++.+|+..=.+ ++...|++.+.--....|=..+++.+...+-.++.|||+ +|-.-.+.
T Consensus 393 l~~L~~~g~i~v~ivTgd~~~~a~~-------i~~~lgi~~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~ 465 (556)
T TIGR01525 393 IAALKRAGGIKLVMLTGDNRSAAEA-------VAAELGIDEVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAA 465 (556)
T ss_pred HHHHHHcCCCeEEEEeCCCHHHHHH-------HHHHhCCCeeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHHHHHhh
Confidence 45678889 9999998888732122 223345543322112223346777777788899999999 77677789
Q ss_pred hhcccchh
Q 045172 144 ANAFFSWS 151 (157)
Q Consensus 144 AD~~fsW~ 151 (157)
||+.+.|.
T Consensus 466 A~vgia~g 473 (556)
T TIGR01525 466 ADVGIAMG 473 (556)
T ss_pred CCEeEEeC
Confidence 99999986
No 78
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=91.82 E-value=0.33 Score=37.49 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhh
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRI 143 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~ 143 (157)
.-|.+.|..+..+++-- ...+ ..=|+++++|-. .+-.++++.|+++|.+++.|-+.....|.+.
T Consensus 50 ~~l~~~g~~~~~~~~~~-----------~~~~--~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ 116 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETT-----------TPSI--KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKL 116 (179)
T ss_pred HHHHhCCCeEEEeCCcc-----------cCCC--CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence 34678899998876521 1122 234888888854 6677889999999999999988767899999
Q ss_pred hhccc
Q 045172 144 ANAFF 148 (157)
Q Consensus 144 AD~~f 148 (157)
||.-|
T Consensus 117 ad~~l 121 (179)
T TIGR03127 117 ADVVV 121 (179)
T ss_pred CCEEE
Confidence 99876
No 79
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=91.82 E-value=0.94 Score=36.86 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=49.2
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+-....... ..-...+.+.+...++|++++.+.+.+-.+.++.+.+.|..+|.||..
T Consensus 81 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~~~ 150 (328)
T PRK11303 81 KYLERQARQRGYQLLIACSDDQ---PDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIALDRA 150 (328)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC---HHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEEECCC
Confidence 3788889999999877542211 222234455555789999999876544456788888899999999864
No 80
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=91.79 E-value=1.4 Score=34.48 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=47.1
Q ss_pred CCcHHHHHhh---ceEE--EEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRA---WFWV--RMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRA---Gv~V--~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++++. |+.+ ... +..+. ........+.+...++|.+++.+-|+ .+.+.+..+.++|...|+++..
T Consensus 19 ~~i~~~~~~~~~~g~~~~l~i~-~~~~~--~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 19 DEFKAQAKELKKAGLISEFIVT-SADGD--VAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred HHHHHHHHhhhccCCeeEEEEe-cCCCC--HHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecC
Confidence 4666777777 9844 443 33332 22233344444468999999988664 4778899999999999998754
No 81
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=91.73 E-value=1.5 Score=34.40 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=57.8
Q ss_pred cHHHHHhhceEEEEecCCCccH-----HHHHHHHHHHHhhccCcceEEEEcCCcc-h----HHHHHHHHH-cC-----Ce
Q 045172 65 FADELKRAWFWVRMVLVKPQDA-----DVLLRNYMVAMVDKRRFGCLVVVSDDSD-F----VEVFQEATL-RW-----LK 128 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAA-----D~AL~~~~~~~~~~r~v~clvLVSDDsD-F----~~~lr~Are-r~-----l~ 128 (157)
+=..|+.+|+.+=.++.+|..+ ..++...+...+...|++..+.++.+.. . .+++..+.+ -| =.
T Consensus 50 ~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 129 (166)
T TIGR01664 50 KLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTR 129 (166)
T ss_pred HHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchh
Confidence 3457788999999999998742 2345556666777777765444443332 2 345555555 34 24
Q ss_pred EEEEcCCC---------chHHHhhhhcccchhh
Q 045172 129 MVVVGDMS---------DGALKRIANAFFSWSD 152 (157)
Q Consensus 129 tVVVGd~~---------~~~L~r~AD~~fsW~e 152 (157)
++.|||.. |-.-.+.|-+-|=|.+
T Consensus 130 ~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~~~ 162 (166)
T TIGR01664 130 SFYVGDAAGRKLDFSDADIKFAKNLGLEFKYPE 162 (166)
T ss_pred cEEEECCCCCCCCCchhHHHHHHHCCCCcCChH
Confidence 99999974 6677777877777764
No 82
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=91.38 E-value=1.5 Score=33.58 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=49.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchH-HHHHHHHHcCCeEEEEcCCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV-EVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~-~~lr~Arer~l~tVVVGd~~ 136 (157)
.|+..++...|+.+.++....+. +.. ...+.+++ ..+++.+++++.+++.. +++..+++.+...|.++...
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~-~~~-~~~~~~l~-~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~~~ 90 (267)
T cd01536 19 KGAEAAAKELGVELIVLDAQNDV-SKQ-IQQIEDLI-AQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSDI 90 (267)
T ss_pred HHHHHHHHhcCceEEEECCCCCH-HHH-HHHHHHHH-HcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecCCC
Confidence 35566677789999887654432 221 13333444 57999999998776654 58899999999999998753
No 83
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=91.29 E-value=1.5 Score=33.26 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.|+..+++..|+.+.......+ ..-...+.+.+-+++++++++...++.=.. ++.+.+.|+..|.++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~ 88 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDED---PEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPL 88 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCC---HHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccc
Confidence 4667777788988887755433 232333333333789999999888766555 888999999999998763
No 84
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=91.23 E-value=1.2 Score=34.63 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=49.8
Q ss_pred CCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 62 GYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 62 gygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
..|+..++++-|+.+........ |........+.+.+.++|++++.+.+.+=.. +..+.+.|..+|++|..
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~ipvv~~~~~ 88 (264)
T cd01574 18 LAAIESAAREAGYAVTLSMLAEA--DEEALRAAVRRLLAQRVDGVIVNAPLDDADA-ALAAAPADVPVVFVDGS 88 (264)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCC--chHHHHHHHHHHHhcCCCEEEEeCCCCChHH-HHHHHhcCCCEEEEecc
Confidence 46888899999999887644322 2344555566565789999999865433233 45567899999999875
No 85
>PRK12342 hypothetical protein; Provisional
Probab=91.22 E-value=1.3 Score=37.95 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=51.1
Q ss_pred HHHHHhhceEEEEecCCCccHHHH-HHHHHHHHhhccCcceEEEEcCC----cch---HHHHHHHHH-cCCeEEEEcCCC
Q 045172 66 ADELKRAWFWVRMVLVKPQDADVL-LRNYMVAMVDKRRFGCLVVVSDD----SDF---VEVFQEATL-RWLKMVVVGDMS 136 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpqAAD~A-L~~~~~~~~~~r~v~clvLVSDD----sDF---~~~lr~Are-r~l~tVVVGd~~ 136 (157)
|-.||+.|-.|-.++..|..|+.+ |+++++ ..|+|-.|||||+ +|- +.+|..+-+ .+..-|+.|..+
T Consensus 44 AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~al----amGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s 119 (254)
T PRK12342 44 ASQLATDGDEIAALTVGGSLLQNSKVRKDVL----SRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGS 119 (254)
T ss_pred HHHHhhcCCEEEEEEeCCChHhHHHHHHHHH----HcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 556676788999999999877666 666665 5799999999988 566 566655544 478889999873
No 86
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=91.15 E-value=0.63 Score=36.68 Aligned_cols=72 Identities=8% Similarity=-0.129 Sum_probs=49.7
Q ss_pred CCcHHHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD-FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD-F~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+-.+. .-+..-|.....+..+.+.. ++|.+++++.+++ +.+.++.+.+.|...|+++..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~~~~~ 92 (275)
T cd06307 19 AALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAPDHPQVRAAVARLAAAGVPVVTLVSD 92 (275)
T ss_pred HHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 477788899887544432 11222233444555566656 9999999987754 468899999999999998753
No 87
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=91.13 E-value=0.98 Score=35.15 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=46.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+........ + .-...+.+.+-..+++++++.+.|++ ++.+++.|..+|.++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~-~--~~~~~~i~~~~~~~~dgiii~~~~~~----~~~~~~~gipvv~~~~~ 84 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSDND-P--EKEREYLEMLRQNQVDGIIAGTHNLG----IEEYENIDLPIVSFDRY 84 (265)
T ss_pred HHHHHHHHHCCCeEEEecCCcc-H--HHHHHHHHHHHHcCCCEEEEecCCcC----HHHHhcCCCCEEEEeCC
Confidence 5778899999998876543322 2 22234444455789999999998766 34777889999999875
No 88
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.11 E-value=1.3 Score=34.44 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=49.6
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+-..+.. .|..-...+.+.+.+.++|.+++++.+.+- +.+...+ .+...|++|-.
T Consensus 19 ~gi~~~~~~~gy~~~~~~~~---~~~~~~~~~i~~l~~~~~dgiii~~~~~~~-~~~~~~~-~~iPvV~i~~~ 86 (265)
T cd06290 19 KGMERGLNGSGYSPIIATGH---WNQSRELEALELLKSRRVDALILLGGDLPE-EEILALA-EEIPVLAVGRR 86 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHCCCCEEEEeCCCCCh-HHHHHHh-cCCCEEEECCC
Confidence 57888999999998776543 345566677777778999999999865443 3344444 58999999864
No 89
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=91.09 E-value=0.86 Score=37.84 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=62.9
Q ss_pred HHHHHHHHhhcCccc----CCC--------cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC---
Q 045172 47 EKNKMAASAILTPKV----GYG--------FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD--- 111 (157)
Q Consensus 47 ~kY~~Aar~~l~pkv----gyg--------la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD--- 111 (157)
+..++++..+...+. |.| ++--|.|.|+.+..++|.. ........+ ..=|+++++|-
T Consensus 128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~------~~~~~~~~~--~~~Dl~I~iS~sG~ 199 (292)
T PRK11337 128 DEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAH------IMLMSAALL--QEGDVVLVVSHSGR 199 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHH------HHHHHHhcC--CCCCEEEEEeCCCC
Confidence 556666665555432 222 3345678898887764421 111111112 34477888875
Q ss_pred CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhccc
Q 045172 112 DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 112 DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~f 148 (157)
..+..++++.|+++|.++|+|-+.....|.+.||.-|
T Consensus 200 t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l 236 (292)
T PRK11337 200 TSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVI 236 (292)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEE
Confidence 3678889999999999999999987789999999877
No 90
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=90.80 E-value=0.45 Score=36.85 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=39.2
Q ss_pred cceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 103 FGCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 103 v~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
=|+++++|- ..+-..+++.|+++|++||.|-+.....|.+.||..|.
T Consensus 102 ~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~ 151 (177)
T cd05006 102 GDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIH 151 (177)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 377888874 35677888999999999999988867889999999874
No 91
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=90.67 E-value=1.2 Score=36.11 Aligned_cols=69 Identities=6% Similarity=0.094 Sum_probs=46.4
Q ss_pred CCcHHHHHhhceEEEEecCC--CccHHHHHHHHHHHHhhccCcceEEEEcCC-cchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVK--PQDADVLLRNYMVAMVDKRRFGCLVVVSDD-SDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dk--pqAAD~AL~~~~~~~~~~r~v~clvLVSDD-sDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+...... ++ ..-.....+.+.++++|.|++++.+ +.+.+.+..+ +.|..+|++++.
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~---~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~-~~~iPvV~~~~~ 90 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPN---LDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL-TKSIPVFALVNQ 90 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCC---HHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH-hcCCCEEEEecC
Confidence 47778899999999876432 22 2222234445558999999999754 4446777766 469999888543
No 92
>PRK13937 phosphoheptose isomerase; Provisional
Probab=90.61 E-value=0.5 Score=37.57 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=40.4
Q ss_pred CcceEEEEc---CCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 102 RFGCLVVVS---DDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 102 ~v~clvLVS---DDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
.=|+++.+| ...+-.++++.|+++|.+||.|-+..+..|.+.||..+.
T Consensus 106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~ 156 (188)
T PRK13937 106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLI 156 (188)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 338888888 456778899999999999999987767899999998774
No 93
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=90.52 E-value=2 Score=32.42 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=50.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.|+..+++..|+.+....+.... | .....+..++ +.+++++|+.+.+......+..+.+.++.+|.++...
T Consensus 19 ~g~~~~~~~~g~~l~~~~~~~~~-~-~~~~~~~~~~-~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~ 89 (264)
T cd01537 19 KGIEEAAKAAGYQVLLANSQNDA-E-KQLSALENLI-ARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCH-H-HHHHHHHHHH-HcCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCC
Confidence 45666677788888877655432 1 2233344444 6799999998877666557899999999999998764
No 94
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=90.40 E-value=1.6 Score=36.63 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCcHHHHHhhc-eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch-HHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAW-FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAG-v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...| +.+.++... .. ........+.+..+++|.|+|+.-|+++ .+.++.+++.|..+|+|+..
T Consensus 44 ~gi~~~a~~~g~~~~~~~~~~-~~--~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~vd~~ 115 (330)
T PRK15395 44 KAIEKDAKAAPDVQLLMNDSQ-ND--QSKQNDQIDVLLAKGVKALAINLVDPAAAPTVIEKARGQDVPVVFFNKE 115 (330)
T ss_pred HHHHHHHHhcCCeEEEEecCC-CC--HHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 46677888885 566553322 12 2233334444557899999998655553 45789999999999999874
No 95
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=90.22 E-value=1.6 Score=37.49 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=51.6
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
-|+..++...|+.+-...-.. |....+.+.+.+..+++|.|++.+ -.+=......+.+.+..+|+||...
T Consensus 78 ~gi~~~~~~~gy~~~l~~~~~---~~~~e~~~~~~l~~~~vdGiIi~~-~~~~~~~~~~l~~~~~P~V~i~~~~ 147 (333)
T COG1609 78 KGIEEAAREAGYSLLLANTDD---DPEKEREYLETLLQKRVDGLILLG-ERPNDSLLELLAAAGIPVVVIDRSP 147 (333)
T ss_pred HHHHHHHHHcCCEEEEECCCC---CHHHHHHHHHHHHHcCCCEEEEec-CCCCHHHHHHHHhcCCCEEEEeCCC
Confidence 378899999999999875554 345556666667789999999998 2222334455566699999999863
No 96
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=90.18 E-value=0.95 Score=34.21 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=44.2
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC--c----chHHHHHHHHHcCCeEEEEcCC-Cc
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD--S----DFVEVFQEATLRWLKMVVVGDM-SD 137 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD--s----DF~~~lr~Arer~l~tVVVGd~-~~ 137 (157)
+-.+|+.+|+.+.+++.-+.. -+...+...|++..+..+.. + -|..+++.....+-.++.|||+ +|
T Consensus 135 ~l~~L~~~Gi~~~i~TGD~~~-------~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD 207 (215)
T PF00702_consen 135 ALQELKEAGIKVAILTGDNES-------TASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVND 207 (215)
T ss_dssp HHHHHHHTTEEEEEEESSEHH-------HHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGGH
T ss_pred hhhhhhccCcceeeeeccccc-------cccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHHH
Confidence 345788899998888754431 11222234677554444443 2 4677888877545599999999 54
Q ss_pred hHHHhhh
Q 045172 138 GALKRIA 144 (157)
Q Consensus 138 ~~L~r~A 144 (157)
-.-.+.|
T Consensus 208 ~~al~~A 214 (215)
T PF00702_consen 208 APALKAA 214 (215)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 3333333
No 97
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=89.99 E-value=2 Score=35.01 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=47.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+.+.....+ ........+.+...++|.+++++.+.+ ..++..+.+.|..+|.++..
T Consensus 79 ~~i~~~~~~~g~~~~i~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~ 147 (329)
T TIGR01481 79 RGIEDIATMYKYNIILSNSDED---PEKEVQVLNTLLSKQVDGIIFMGGTIT-EKLREEFSRSPVPVVLAGTV 147 (329)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC---HHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhcCCCEEEEecC
Confidence 4677888889999877543322 222334444455789999999875433 34567777889999999864
No 98
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=89.83 E-value=1.1 Score=41.36 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=53.8
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhhhh
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRIAN 145 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD 145 (157)
.+|++.|+.+-+++.+++. .+...+...|++++.-+ ...+=..+++...+.+-+++.|||+ +|-..-+.||
T Consensus 415 ~~Lk~~Gi~v~ilSgd~~~-------~a~~ia~~lgi~~~~~~-~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~ 486 (562)
T TIGR01511 415 QALKRRGIEPVMLTGDNRK-------TAKAVAKELGINVRAEV-LPDDKAALIKELQEKGRVVAMVGDGINDAPALAQAD 486 (562)
T ss_pred HHHHHcCCeEEEEcCCCHH-------HHHHHHHHcCCcEEccC-ChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCC
Confidence 4688889888888888772 12222233466633222 1235577888888888899999999 8777788899
Q ss_pred cccchh
Q 045172 146 AFFSWS 151 (157)
Q Consensus 146 ~~fsW~ 151 (157)
+.+.|.
T Consensus 487 vgia~g 492 (562)
T TIGR01511 487 VGIAIG 492 (562)
T ss_pred EEEEeC
Confidence 998886
No 99
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=89.82 E-value=1.9 Score=33.22 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=47.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+|+..+++..|+.+.++...- |......+++.+...++|.+++.+.+.+-. +++ +.+.|...|++++.
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~~~-~~~~~ipvv~~~~~ 86 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDTRS---DPEREQEYLDLLRRKQADGIILLDGSLPPT-ALT-ALAKLPPIVQACEY 86 (267)
T ss_pred HHHHHHHHHcCCeEEEecCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCHH-HHH-HHhcCCCEEEEecc
Confidence 678888999999997764332 234444555566578999999987665433 333 44679999999865
No 100
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=89.66 E-value=2 Score=34.74 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=49.4
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcc-eEE--EEcCC------------cchHHHHHHHHHcCCe
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFG-CLV--VVSDD------------SDFVEVFQEATLRWLK 128 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~-clv--LVSDD------------sDF~~~lr~Arer~l~ 128 (157)
.+-..|++.| .+-.||.+++. ....+.+ ..|++ .++ |..++ .+=..+++...+.|..
T Consensus 75 ell~~lk~~~-~~~IVS~~~~~----~~~~il~---~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~ 146 (203)
T TIGR02137 75 EFVDWLRERF-QVVILSDTFYE----FSQPLMR---QLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR 146 (203)
T ss_pred HHHHHHHhCC-eEEEEeCChHH----HHHHHHH---HcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence 4556677765 88888999882 2222222 23443 222 33333 2233457777778889
Q ss_pred EEEEcCC-CchHHHhhhhcccc
Q 045172 129 MVVVGDM-SDGALKRIANAFFS 149 (157)
Q Consensus 129 tVVVGd~-~~~~L~r~AD~~fs 149 (157)
++.|||+ +|-.+.+.||..+-
T Consensus 147 ~v~vGDs~nDl~ml~~Ag~~ia 168 (203)
T TIGR02137 147 VIAAGDSYNDTTMLSEAHAGIL 168 (203)
T ss_pred EEEEeCCHHHHHHHHhCCCCEE
Confidence 9999999 77788888887663
No 101
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=89.63 E-value=2.5 Score=32.02 Aligned_cols=92 Identities=14% Similarity=-0.018 Sum_probs=52.0
Q ss_pred HHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcce---EEEEcCCcc----------
Q 045172 49 NKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGC---LVVVSDDSD---------- 114 (157)
Q Consensus 49 Y~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~c---lvLVSDDsD---------- 114 (157)
++....+ +.|.-| --+-..|++.|+.+-.||..+. .+...+.+. .|++. -.+.+++..
T Consensus 72 ~~~~~~~-~~~~~g~~e~l~~l~~~g~~~~IvS~~~~----~~~~~~l~~---~g~~~~~~~~~~~~~~g~~~p~~~~~~ 143 (201)
T TIGR01491 72 VEEIFKE-ISLRDYAEELVRWLKEKGLKTAIVSGGIM----CLAKKVAEK---LNPDYVYSNELVFDEKGFIQPDGIVRV 143 (201)
T ss_pred HHHHHHh-CCCCccHHHHHHHHHHCCCEEEEEeCCcH----HHHHHHHHH---hCCCeEEEEEEEEcCCCeEecceeeEE
Confidence 4443333 344444 3456788899999999999875 233333332 24432 233444321
Q ss_pred ----hHHHHHHHHH-cCC---eEEEEcCC-CchHHHhhhhccc
Q 045172 115 ----FVEVFQEATL-RWL---KMVVVGDM-SDGALKRIANAFF 148 (157)
Q Consensus 115 ----F~~~lr~Are-r~l---~tVVVGd~-~~~~L~r~AD~~f 148 (157)
-..+++.+.+ .|+ .++.|||+ +|-.....|+..|
T Consensus 144 ~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~ 186 (201)
T TIGR01491 144 TFDNKGEAVERLKRELNPSLTETVAVGDSKNDLPMFEVADISI 186 (201)
T ss_pred ccccHHHHHHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeE
Confidence 1235555444 454 58999999 6556666666644
No 102
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.52 E-value=1.7 Score=34.64 Aligned_cols=65 Identities=20% Similarity=0.108 Sum_probs=48.2
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+..++... +.. +.+.+...++|.+++.+.+.. ...++.+++.|...|.++..
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~---~~~----~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~ 88 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS---EDS----DSALVVSALVDGFIVYGVPRD-DPLVAALLRRGLPVVVVDQP 88 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc---HHH----HHHHHHhcCCCEEEEeCCCCC-hHHHHHHHHcCCCEEEEecC
Confidence 578899999999998876543 222 223334789999999886533 36789999999999999765
No 103
>PRK13936 phosphoheptose isomerase; Provisional
Probab=89.26 E-value=0.72 Score=37.08 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=39.1
Q ss_pred CcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhh---hhccc
Q 045172 102 RFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRI---ANAFF 148 (157)
Q Consensus 102 ~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~---AD~~f 148 (157)
.=|+++++|-. .+-.++++.|+++|+++|.|.+.....|.+. ||..|
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l 163 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEI 163 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEE
Confidence 44999999955 6778899999999999999999766778874 88776
No 104
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=89.16 E-value=1.6 Score=42.68 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccchh
Q 045172 113 SDFVEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFSWS 151 (157)
Q Consensus 113 sDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fsW~ 151 (157)
.+=..+++..++.|-.+..|||+ +|-.--+.||++++|.
T Consensus 604 ~~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~g 643 (884)
T TIGR01522 604 EHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMG 643 (884)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEecC
Confidence 34577889999999999999999 7766668999999984
No 105
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=88.81 E-value=1.7 Score=35.23 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=50.4
Q ss_pred CcHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcCC
Q 045172 64 GFADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd~ 135 (157)
++...|+.+|+.|... .-.+.+.|.+ ..+..+. ..+.|.|++.+..++...+++.+++.|+ +..++|-+
T Consensus 153 ~~~~~~~~~G~~v~~~~~~~~~~~d~~--~~v~~~~-~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 224 (336)
T cd06360 153 GFKEAFTEAGGKIVKELWVPFGTSDFA--SYLAQIP-DDVPDAVFVFFAGGDAIKFVKQYDAAGLKAKIPLIGSG 224 (336)
T ss_pred HHHHHHHHcCCEEEEEEecCCCCcchH--HHHHHHH-hcCCCEEEEecccccHHHHHHHHHHcCCccCCeEEecc
Confidence 3556788889887543 3334566654 3444445 5789999999999999999999999999 66677643
No 106
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=88.72 E-value=1.2 Score=35.95 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=48.4
Q ss_pred cHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcC
Q 045172 65 FADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd 134 (157)
+..+|..+|+.|-.+ .-.+...| ....+.++. ..+.+.+++.+...+...+++.+++.|++..++|-
T Consensus 156 ~~~~~~~~g~~v~~~~~~~~~~~d--~~~~~~~~~-~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~i~~~ 223 (334)
T cd06347 156 FKEAFKKLGGEIVAEETFNAGDTD--FSAQLTKIK-AKNPDVIFLPGYYTEVGLIAKQARELGIKVPILGG 223 (334)
T ss_pred HHHHHHHcCCEEEEEEEecCCCCc--HHHHHHHHH-hcCCCEEEEcCchhhHHHHHHHHHHcCCCCcEEec
Confidence 445666788766543 22344445 445555555 57999999999999999999999999998877763
No 107
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=88.69 E-value=0.63 Score=37.68 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=53.8
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALK 141 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~ 141 (157)
++--|-+.|..+..+++ ......+...+ ..=|+++.+|-. .+-..+++.|+++|++++.|-+.....|.
T Consensus 18 ~~~~l~~~g~~~~~~~~------~~~~~~~~~~~--~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~ 89 (268)
T TIGR00393 18 IVATFASTGTPSFFLHP------TEAMHGDLGMV--EPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGSPNSSLA 89 (268)
T ss_pred HHHHHHhcCCceEEeCH------hHHhhcccCCC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCCccc
Confidence 34445677777776543 11111010112 233889999865 66778899999999999999998778999
Q ss_pred hhhhcccch
Q 045172 142 RIANAFFSW 150 (157)
Q Consensus 142 r~AD~~fsW 150 (157)
..||..|..
T Consensus 90 ~~~d~~l~~ 98 (268)
T TIGR00393 90 RAADYVLDI 98 (268)
T ss_pred ccCCEEEEc
Confidence 999999865
No 108
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=88.54 E-value=2.6 Score=36.92 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=50.4
Q ss_pred cHHHHHhhceEEEE---ecCCCccH--HHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 65 FADELKRAWFWVRM---VLVKPQDA--DVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~---V~dkpqAA--D~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+..++++.|+-|-. ++..+... +......+...+...+.+.+++.++..+-..+++.|++.|++.+.||-.
T Consensus 192 f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~ 267 (403)
T cd06361 192 FIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKAIERNINKVWIASD 267 (403)
T ss_pred HHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEEC
Confidence 55788889987743 33332211 1123333344344678999999999999999999999999998888855
No 109
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.54 E-value=2.8 Score=32.75 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=46.6
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
-|+..+++..|+.+.......+ ......+.+.+-..++|+|++++.+.+.. .. .+...|..+|.|+..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~~dgiii~~~~~~~~-~~-~~~~~~iPvV~~~~~ 86 (263)
T cd06280 19 RAVEDAAYRAGLRVILCNTDED---PEKEAMYLELMEEERVTGVIFAPTRATLR-RL-AELRLSFPVVLIDRA 86 (263)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC---HHHHHHHHHHHHhCCCCEEEEeCCCCCch-HH-HHHhcCCCEEEECCC
Confidence 3677889999999977654433 23333444445478899999999665543 33 456679999999865
No 110
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=88.49 E-value=1.3 Score=37.32 Aligned_cols=96 Identities=22% Similarity=0.204 Sum_probs=66.9
Q ss_pred hhHHHHHHHHhhcCccc----CCC--------cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC
Q 045172 45 KMEKNKMAASAILTPKV----GYG--------FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD 112 (157)
Q Consensus 45 k~~kY~~Aar~~l~pkv----gyg--------la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD 112 (157)
.++..++|+.-+...+. |.| ++--|-|-|+.|..++|.... . | ++...+-+++|++-+-
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~------~-~--~~~~~~~~Dv~i~iS~ 186 (281)
T COG1737 116 DEEALERAVELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQ------L-M--QLALLTPGDVVIAISF 186 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHH------H-H--HHHhCCCCCEEEEEeC
Confidence 45566677776666661 222 234567889999998876551 1 1 2224556656655555
Q ss_pred cch----HHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 113 SDF----VEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 113 sDF----~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
|.. ..+++.|+++|+++|.|=|.....|.+.||..+.
T Consensus 187 sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~ 227 (281)
T COG1737 187 SGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLL 227 (281)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEe
Confidence 544 5678999999999999999977899999999874
No 111
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=88.44 E-value=3 Score=32.41 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=45.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+.++...- |.+....+++.+..+++|.+++.+-+.+-..+-......|..+|+||..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~ 88 (269)
T cd06275 19 RGVEQYCYRQGYNLILCNTEG---DPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWG 88 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecc
Confidence 467778888899887754322 2334444444555789999999886655322222233468999999865
No 112
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=88.36 E-value=2.5 Score=32.91 Aligned_cols=65 Identities=8% Similarity=0.134 Sum_probs=46.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.+.|+.+......++ ....+.+.+.++|++++++.+.+ ...++.+++.|..+|.+|..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~-------~~~~~~l~~~~vdgii~~~~~~~-~~~~~~~~~~~ipvV~~~~~ 83 (261)
T cd06272 19 TGINQAISKNGYNMNVSITPSL-------AEAEDLFKENRFDGVIIFGESAS-DVEYLYKIKLAIPVVSYGVD 83 (261)
T ss_pred HHHHHHHHHcCCEEEEEecccH-------HHHHHHHHHcCcCEEEEeCCCCC-hHHHHHHHHcCCCEEEEccc
Confidence 4778889999998887643211 12233344789999999976543 33568888999999999875
No 113
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=88.28 E-value=0.94 Score=36.43 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=40.8
Q ss_pred cCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhccc
Q 045172 101 RRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 101 r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~f 148 (157)
..=|+++.+|.. .+-..+++.|+++|++||.|-...+..|.+.||.-+
T Consensus 110 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l 160 (192)
T PRK00414 110 REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEI 160 (192)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEE
Confidence 455888889854 677788999999999999998877789999999876
No 114
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=87.98 E-value=4.4 Score=31.05 Aligned_cols=75 Identities=12% Similarity=0.080 Sum_probs=43.9
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEE---EEc-CCcchH--------------H-HHHHHHHcCC
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLV---VVS-DDSDFV--------------E-VFQEATLRWL 127 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clv---LVS-DDsDF~--------------~-~lr~Arer~l 127 (157)
..|++.|+.|-.|+..|+ . +.+.+.+. .|++.++ ++. +|--|+ . +.+.+.+.++
T Consensus 97 ~~l~~~g~~v~ivS~s~~---~-~v~~~~~~---lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~~ 169 (202)
T TIGR01490 97 RWHKAEGHTIVLVSASLT---I-LVKPLARI---LGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQI 169 (202)
T ss_pred HHHHHCCCEEEEEeCCcH---H-HHHHHHHH---cCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcCC
Confidence 445788999999999997 2 22223322 3555332 333 431121 2 3344455676
Q ss_pred ---eEEEEcCC-CchHHHhhhhccc
Q 045172 128 ---KMVVVGDM-SDGALKRIANAFF 148 (157)
Q Consensus 128 ---~tVVVGd~-~~~~L~r~AD~~f 148 (157)
.++.|||+ +|-.+.+.|+..+
T Consensus 170 ~~~~~~~~gDs~~D~~~~~~a~~~~ 194 (202)
T TIGR01490 170 DLKDSYAYGDSISDLPLLSLVGHPY 194 (202)
T ss_pred CHHHcEeeeCCcccHHHHHhCCCcE
Confidence 58899999 6666666666543
No 115
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=87.94 E-value=3 Score=33.82 Aligned_cols=69 Identities=7% Similarity=-0.023 Sum_probs=43.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd 134 (157)
.|+..++.+.|+.+.......+ ..-..++.+.+...++|.+++.+.+.+....-...+..++.+|.||.
T Consensus 76 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~ 144 (327)
T PRK10423 76 RGVERSCFERGYSLVLCNTEGD---EQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDW 144 (327)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC---HHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECC
Confidence 4778899999998876543322 22233444445578999999998665543221111235889999975
No 116
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=87.06 E-value=2.1 Score=34.64 Aligned_cols=67 Identities=12% Similarity=-0.052 Sum_probs=48.0
Q ss_pred HHHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 66 ADELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 66 a~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
...|++.|+.|-... -.|.+.|.. ..+..+. ..+.+.+++.+...+...+++.+++.|+...++|..
T Consensus 156 ~~~~~~~g~~v~~~~~~~~~~~d~~--~~l~~i~-~~~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (334)
T cd06342 156 KKALKAAGGKVVAREGTTDGATDFS--AILTKIK-AANPDAVFFGGYYPEAGPLVRQMRQLGLKAPFMGGD 223 (334)
T ss_pred HHHHHHcCCEEEEEecCCCCCccHH--HHHHHHH-hcCCCEEEEcCcchhHHHHHHHHHHcCCCCcEEecC
Confidence 355666788666543 333455642 2233333 578999999999999999999999999998888764
No 117
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=87.03 E-value=3.2 Score=32.86 Aligned_cols=68 Identities=12% Similarity=-0.040 Sum_probs=44.8
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHc-CCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLR-WLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer-~l~tVVVGd~ 135 (157)
.|+..+++..|+.+...... . ..-..++.+.+..+++|.|++++.+.+ ..++..+.+. +...|+++..
T Consensus 21 ~gi~~~~~~~gy~~~~~~~~-~---~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~~ipvv~~~~~ 89 (260)
T cd06304 21 EGLEKAEKELGVEVKYVESV-E---DADYEPNLRQLAAQGYDLIFGVGFGFM-DAVEKVAKEYPDVKFAIIDGV 89 (260)
T ss_pred HHHHHHHHhcCceEEEEecC-C---HHHHHHHHHHHHHcCCCEEEECCcchh-HHHHHHHHHCCCCEEEEecCc
Confidence 46778889999998875332 2 223345666666789999999875533 2333444443 7888998865
No 118
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=86.92 E-value=4 Score=33.47 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=49.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH-cCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL-RWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are-r~l~tVVVGd~ 135 (157)
.|+..++...|+.+.+.+.. . |..-...+.+.+..+++|+|++++.+. ..+.++.+.+ .|+.+|.++..
T Consensus 79 ~gi~~~~~~~g~~~~~~~~~-~--~~~~~~~~i~~l~~~~vdgiii~~~~~-~~~~~~~l~~~~~iPvV~~d~~ 148 (341)
T PRK10703 79 EAVEKNCYQKGYTLILCNAW-N--NLEKQRAYLSMLAQKRVDGLLVMCSEY-PEPLLAMLEEYRHIPMVVMDWG 148 (341)
T ss_pred HHHHHHHHHCCCEEEEEeCC-C--CHHHHHHHHHHHHHcCCCEEEEecCCC-CHHHHHHHHhcCCCCEEEEecc
Confidence 57888899999988876432 1 233344555555578999999987543 3467788888 89999999754
No 119
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=86.87 E-value=1.4 Score=35.18 Aligned_cols=83 Identities=27% Similarity=0.333 Sum_probs=54.6
Q ss_pred CCcHHHHHhhceEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEc-CC-----cchHHHHHHHHHcCCe---EEEE
Q 045172 63 YGFADELKRAWFWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVS-DD-----SDFVEVFQEATLRWLK---MVVV 132 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVS-DD-----sDF~~~lr~Arer~l~---tVVV 132 (157)
+.+-.+|+.+|+..=.|+.||+ .++..|..+-..- -+++ .++ |+ +|-..++..+.+.|+. ++.|
T Consensus 95 ~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~----~F~~--i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~V 168 (220)
T COG0546 95 KELLAALKSAGYKLGIVTNKPERELDILLKALGLAD----YFDV--IVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMV 168 (220)
T ss_pred HHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc----ccce--EEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEE
Confidence 5566789999999999999998 4444444322211 1222 333 32 3456788888888887 8999
Q ss_pred cCC-CchHHHhhhh---cccchh
Q 045172 133 GDM-SDGALKRIAN---AFFSWS 151 (157)
Q Consensus 133 Gd~-~~~~L~r~AD---~~fsW~ 151 (157)
||+ .|-.-.++|. +.+.|.
T Consensus 169 GDs~~Di~aA~~Ag~~~v~v~~g 191 (220)
T COG0546 169 GDSLNDILAAKAAGVPAVGVTWG 191 (220)
T ss_pred CCCHHHHHHHHHcCCCEEEEECC
Confidence 999 5555566665 445664
No 120
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=86.42 E-value=3.5 Score=32.00 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=45.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
-|+..+++..|+.+......- |..-...+.+.+.+.++|++++.+.+.+ .+.++.+.+.+ .+|+|+..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~-pvv~~~~~ 86 (260)
T cd06286 19 DGIEKAALKHGYKVVLLQTNY---DKEKELEYLELLKTKQVDGLILCSREND-WEVIEPYTKYG-PIVLCEEY 86 (260)
T ss_pred HHHHHHHHHcCCEEEEEeCCC---ChHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHhcCC-CEEEEecc
Confidence 467788888899887754321 1222223444444789999999886544 35677777877 88888764
No 121
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=86.34 E-value=3.2 Score=34.38 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=11.8
Q ss_pred CcceEEEEcCCcchHHHHHHHH
Q 045172 102 RFGCLVVVSDDSDFVEVFQEAT 123 (157)
Q Consensus 102 ~v~clvLVSDDsDF~~~lr~Ar 123 (157)
+.+++|.+.-|=-+..+++.+.
T Consensus 57 ~~d~ivv~GGDGTl~~v~~~l~ 78 (293)
T TIGR00147 57 GVDTVIAGGGDGTINEVVNALI 78 (293)
T ss_pred CCCEEEEECCCChHHHHHHHHh
Confidence 4555555555555555555443
No 122
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=86.29 E-value=1.6 Score=35.87 Aligned_cols=66 Identities=24% Similarity=0.182 Sum_probs=44.5
Q ss_pred cHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEc
Q 045172 65 FADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVG 133 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVG 133 (157)
+...|+++|.-+.+|.. .+...| ....+.+++ ..+.+.+++++...+...+++.+++.|+ ...++|
T Consensus 158 ~~~~~~~~g~~~~~v~~~~~~~~~~d--~~~~v~~i~-~~~~d~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 228 (346)
T cd06330 158 FKAALKRLRPDVEVVSEQWPKLGAPD--YGSEITALL-AAKPDAIFSSLWGGDLVTFVRQANARGLFDGTTVVL 228 (346)
T ss_pred HHHHHHHhCCCCeecccccCCCCCcc--cHHHHHHHH-hcCCCEEEEecccccHHHHHHHHHhcCcccCceEEe
Confidence 45667777654455432 223333 334445555 6889999999989999999999999999 434443
No 123
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=86.25 E-value=2.6 Score=34.48 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=62.1
Q ss_pred HHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHH----------
Q 045172 49 NKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVE---------- 117 (157)
Q Consensus 49 Y~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~---------- 117 (157)
-++...+.++...| -.|...|+.+|..|-.||..|. -+-+.+.+.+--..+-+.+|..+|--|++
T Consensus 68 v~~~~~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~----~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~ 143 (212)
T COG0560 68 LEEVREEFLRLTPGAEELVAALKAAGAKVVIISGGFT----FLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGE 143 (212)
T ss_pred HHHHHHhcCcCCccHHHHHHHHHHCCCEEEEEcCChH----HHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcc
Confidence 33444443333333 5678899999999999999998 44444544442112234445555411333
Q ss_pred -----HHHHHHHcCCe---EEEEcCC-CchHHHhhhhcccch
Q 045172 118 -----VFQEATLRWLK---MVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 118 -----~lr~Arer~l~---tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
+.+.+.+.|.. |+-+||+ +|-.+-+.|+..+-+
T Consensus 144 ~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 144 GKAKALRELAAELGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred hHHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 44777888997 9999999 777777777766543
No 124
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=86.10 E-value=2.2 Score=31.85 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=48.9
Q ss_pred CcccC-CCcHHHHHhhceEEEEecCCCcc-HHHHHHHHHHHHhhccCcceE--EEEcC---------------------C
Q 045172 58 TPKVG-YGFADELKRAWFWVRMVLVKPQD-ADVLLRNYMVAMVDKRRFGCL--VVVSD---------------------D 112 (157)
Q Consensus 58 ~pkvg-ygla~eLrRAGv~V~~V~dkpqA-AD~AL~~~~~~~~~~r~v~cl--vLVSD---------------------D 112 (157)
.|.-| ..+-..|+..|+.+-.+|..+.. .+..+. ..+++-+ ..+|. +
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~--------~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 143 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLE--------GIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCS 143 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHH--------HcCChhheeEEeccCceECCCCcEEEecCCCCccCc
Confidence 34333 44557788899999999988762 222221 1222111 12221 1
Q ss_pred cc----hHHHHHHHHHc-CCeEEEEcCC-CchHHHhhhhccc
Q 045172 113 SD----FVEVFQEATLR-WLKMVVVGDM-SDGALKRIANAFF 148 (157)
Q Consensus 113 sD----F~~~lr~Arer-~l~tVVVGd~-~~~~L~r~AD~~f 148 (157)
+. =..+++...+. .-+++.|||+ +|-.-.+.||+-|
T Consensus 144 ~~~g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 144 CPCGCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCCCCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCccc
Confidence 11 13477777776 8889999999 6655666788765
No 125
>PRK10671 copA copper exporting ATPase; Provisional
Probab=86.03 E-value=2.2 Score=41.17 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=47.9
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhhhh
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRIAN 145 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD 145 (157)
.+|+..|+.+-+++.+++..=.+ .+...|++-+.--....+=..+++.....+-.++.|||+ +|-..-+.||
T Consensus 660 ~~L~~~gi~v~~~Tgd~~~~a~~-------ia~~lgi~~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 732 (834)
T PRK10671 660 QRLHKAGYRLVMLTGDNPTTANA-------IAKEAGIDEVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQAD 732 (834)
T ss_pred HHHHHCCCeEEEEcCCCHHHHHH-------HHHHcCCCEEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCC
Confidence 45667777776666555521111 112234432221112223455677777788889999999 8888889999
Q ss_pred cccchh
Q 045172 146 AFFSWS 151 (157)
Q Consensus 146 ~~fsW~ 151 (157)
+.+.|.
T Consensus 733 vgia~g 738 (834)
T PRK10671 733 VGIAMG 738 (834)
T ss_pred eeEEec
Confidence 998885
No 126
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=85.99 E-value=3.4 Score=37.12 Aligned_cols=72 Identities=26% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCcHHHHHhhc--eEEEEecCCCc---cHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH----cCCeEEEEc
Q 045172 63 YGFADELKRAW--FWVRMVLVKPQ---DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL----RWLKMVVVG 133 (157)
Q Consensus 63 ygla~eLrRAG--v~V~~V~dkpq---AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are----r~l~tVVVG 133 (157)
.-+.+||++-| |.|=+|+.-|. .||..+.+++-++++..+.+..++|||-.+=..++---+. .+++-|||=
T Consensus 54 vkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~i~VsDGaeDE~vlPiIqSr~~V~sV~RVVVk 133 (344)
T PF04123_consen 54 VKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSAIVVSDGAEDERVLPIIQSRVPVDSVKRVVVK 133 (344)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEEEEEecChhhhhhhHhhhccCceEEEEEEEEE
Confidence 45779999999 55666766666 7999999999999999999999999997765555444433 567777774
Q ss_pred C
Q 045172 134 D 134 (157)
Q Consensus 134 d 134 (157)
=
T Consensus 134 Q 134 (344)
T PF04123_consen 134 Q 134 (344)
T ss_pred c
Confidence 3
No 127
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=85.82 E-value=2.5 Score=36.73 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=52.2
Q ss_pred cccCCCcHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHH-----------H
Q 045172 59 PKVGYGFADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEAT-----------L 124 (157)
Q Consensus 59 pkvgygla~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Ar-----------e 124 (157)
|.-+..|+..|+..|..|-.+|. .|-..+-++...+.+.. ....||||+.|-+. ...++..++ -
T Consensus 19 ~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~-~~~~d~vvfTS~ng-v~~~~~~l~~~~~~~~~~~~l 96 (381)
T PRK07239 19 ARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALI-AAPPDIVVATTGIG-FRGWVEAADGWGLADELLEAL 96 (381)
T ss_pred cCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHH-cCCCCEEEEeChHH-HHHHHHHHHHcCChHHHHHHH
Confidence 44446788999999999887632 22222223333333333 35799999999776 333333322 2
Q ss_pred cCCeEEEEcCCCchHHHh
Q 045172 125 RWLKMVVVGDMSDGALKR 142 (157)
Q Consensus 125 r~l~tVVVGd~~~~~L~r 142 (157)
.+++.+.||..|..+|..
T Consensus 97 ~~~~i~aVG~~Ta~aL~~ 114 (381)
T PRK07239 97 SSARLLARGPKATGAIRA 114 (381)
T ss_pred cCCeEEEECccHHHHHHH
Confidence 578899999998777774
No 128
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=85.79 E-value=2.5 Score=32.43 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=44.3
Q ss_pred CcHHHHHhhceEEEEecCC-CccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcC
Q 045172 64 GFADELKRAWFWVRMVLVK-PQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGD 134 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dk-pqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd 134 (157)
++...++.+|+.+..+..- +...|. ...+.++. ..+.+.+++.++.++...+++.+++.|+ ...+||-
T Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~--~~~~~~l~-~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 155 AFKAAFKKKGGTVVGEEYYPLGTTDF--TSLLQKLK-AAKPDVIVLCGSGEDAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHHHHHHcCCEEEEEecCCCCCccH--HHHHHHHH-hcCCCEEEEcccchHHHHHHHHHHHcCCCCCCcEEec
Confidence 4556777888766543222 222332 22233333 4567888888888999999999999999 6666663
No 129
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=85.63 E-value=7.5 Score=27.53 Aligned_cols=67 Identities=18% Similarity=0.091 Sum_probs=42.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEc-CCcchHHHHHHHH---HcCCe-EEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVS-DDSDFVEVFQEAT---LRWLK-MVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS-DDsDF~~~lr~Ar---er~l~-tVVVGd~ 135 (157)
.-+++.|+++|+.|..+..-... .++.+.+...+.|.+++-+ ..+.+..+.+.++ +.+-. .+++|..
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPP------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-H------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHCCCeEEEECCCCCH------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 44789999999999987322211 5555656567888877766 5666655555554 44332 5556655
No 130
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=85.56 E-value=6.3 Score=29.06 Aligned_cols=71 Identities=8% Similarity=0.048 Sum_probs=47.9
Q ss_pred CCcHHHHHh--hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 63 YGFADELKR--AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrR--AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.|+...+.. .|+.+.++.......+ ....+.++. ..+++.+++.+.+..-..++..+.+.++.+|.++-..
T Consensus 20 ~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~ 92 (269)
T cd01391 20 AGIELAAEEIGRGLEVILADSQSDPER--ALEALRDLI-QQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATA 92 (269)
T ss_pred HHHHHHHHHhCCceEEEEecCCCCHHH--HHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCC
Confidence 355556666 6777776654433212 222233333 5699999999888776668999999999999998763
No 131
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=85.56 E-value=2.5 Score=34.90 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=49.2
Q ss_pred CCcHHHHHhhce--EEEEecCCCccHHHHHHH-HHHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWF--WVRMVLVKPQDADVLLRN-YMVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv--~V~~V~dkpqAAD~AL~~-~~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+-.+-+..|+ .+...+..+ |.+-+. ++.+++ .+++|.|++..-|+ -+.+.+++|.++|..+|.+-..
T Consensus 53 ~g~~~~a~~~g~~~~~~~~~~~~---d~~~Q~~~i~~~i-a~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~ 125 (322)
T COG1879 53 KGAEAAAKKLGVVVAVVIADAQN---DVAKQIAQIEDLI-AQGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSD 125 (322)
T ss_pred HHHHHHHHHcCCcEEEEeccccc---ChHHHHHHHHHHH-HcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecC
Confidence 567788888895 444433333 344444 334444 79999999986555 6999999999999999998776
No 132
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=85.43 E-value=3.1 Score=38.97 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhhcCccc----CCC--------cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC
Q 045172 45 KMEKNKMAASAILTPKV----GYG--------FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD 112 (157)
Q Consensus 45 k~~kY~~Aar~~l~pkv----gyg--------la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD 112 (157)
..+.+++++..+...+. |.| +...|.+.|+.+....| ..+.......+ ..=|+++++|-.
T Consensus 454 d~~~l~~aa~~L~~a~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d------~~~~~~~~~~l--~~~DvvI~iS~s 525 (638)
T PRK14101 454 NFEHVEQAIDILNNARRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGD------LYMQAASAALL--GKGDVIVAVSKS 525 (638)
T ss_pred CHHHHHHHHHHHhcCCEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCC------HHHHHHHHhcC--CCCCEEEEEeCC
Confidence 34567777777766554 223 23356778888776543 22322222233 233889999864
Q ss_pred ---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 113 ---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 113 ---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
.+-..+++.|+++|+++|.|-|. ...|.+.||.-|.
T Consensus 526 G~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 526 GRAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 45677888999999999999996 6889999998773
No 133
>PRK13938 phosphoheptose isomerase; Provisional
Probab=85.33 E-value=1.3 Score=36.16 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=39.7
Q ss_pred CcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccch
Q 045172 102 RFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 102 ~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
.=|+++.+|-. .+-..+++.|+++|+++|.|.+..+..|.+.||.-|..
T Consensus 113 ~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v 164 (196)
T PRK13938 113 PGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINV 164 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEe
Confidence 33788888875 34457788999999999999998778999999987743
No 134
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=85.30 E-value=3.3 Score=32.49 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=41.7
Q ss_pred ccCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHH-HHHcCC---eEEEEcCC
Q 045172 60 KVGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQE-ATLRWL---KMVVVGDM 135 (157)
Q Consensus 60 kvgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~-Arer~l---~tVVVGd~ 135 (157)
+.|+|+ ..|+..|+.+-.++.+|.. ... . .+...|++-+.- +.+ +..+.++. +.+.|+ .++.|||+
T Consensus 52 ~d~~~i-~~L~~~Gi~v~I~T~~~~~---~v~-~---~l~~lgl~~~f~-g~~-~k~~~l~~~~~~~gl~~~ev~~VGDs 121 (183)
T PRK09484 52 RDGYGI-RCLLTSGIEVAIITGRKSK---LVE-D---RMTTLGITHLYQ-GQS-NKLIAFSDLLEKLAIAPEQVAYIGDD 121 (183)
T ss_pred cchHHH-HHHHHCCCEEEEEeCCCcH---HHH-H---HHHHcCCceeec-CCC-cHHHHHHHHHHHhCCCHHHEEEECCC
Confidence 334555 4577899999999988872 111 1 222334443221 333 33344444 444665 58888888
Q ss_pred -CchHHHhhhhc
Q 045172 136 -SDGALKRIANA 146 (157)
Q Consensus 136 -~~~~L~r~AD~ 146 (157)
+|-...+.|.+
T Consensus 122 ~~D~~~a~~aG~ 133 (183)
T PRK09484 122 LIDWPVMEKVGL 133 (183)
T ss_pred HHHHHHHHHCCC
Confidence 54444444443
No 135
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=85.26 E-value=4.1 Score=32.50 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCcHHHHHhhc-eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAW-FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAG-v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
-|+...|...| +.+-+....+ | ....+..++ .+++|.++++|...+=......+.+.+..+|++|..
T Consensus 18 ~~i~~~l~~~g~~~l~~~~~~~---~--~~~~~~~~~-~~~vdGvIi~~~~~~~~~~~~~~~~~~~PvV~i~~~ 85 (247)
T cd06276 18 NSFVNTLGKNAQVDLYFHHYNE---D--LFKNIISNT-KGKYSGYVVMPHFKNEIQYFLLKKIPKEKLLILDHS 85 (247)
T ss_pred HHHHHHHHhcCcEEEEEEcCch---H--HHHHHHHHH-hcCCCEEEEecCCCCcHHHHHHhccCCCCEEEEcCc
Confidence 47888999999 7776654443 2 223445555 689999999986422111344445578899999975
No 136
>PRK02947 hypothetical protein; Provisional
Probab=85.21 E-value=1.5 Score=36.53 Aligned_cols=48 Identities=27% Similarity=0.317 Sum_probs=39.7
Q ss_pred cCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCC-----------chHHHhhhhccc
Q 045172 101 RRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMS-----------DGALKRIANAFF 148 (157)
Q Consensus 101 r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~-----------~~~L~r~AD~~f 148 (157)
..=|+++++|-. .+-.++++.|+++|.++|.|-+.. ...|.+.||.-+
T Consensus 105 ~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l 166 (246)
T PRK02947 105 RPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVL 166 (246)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEE
Confidence 344899999954 677788999999999999999874 268999999877
No 137
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=85.10 E-value=2.9 Score=32.03 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=45.6
Q ss_pred CcHHHHHhhceEEEEecCC-CccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVK-PQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dk-pqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
++...+++.|+.+.....- +...| ....+.+++ ..+.+.+++.++..+...+++.+++.|+...++|-.
T Consensus 154 ~~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~~l~-~~~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 223 (298)
T cd06268 154 AFREALKKLGGEVVAEETYPPGATD--FSPLIAKLK-AAGPDAVFLAGYGGDAALFLKQAREAGLKVPIVGGD 223 (298)
T ss_pred HHHHHHHHcCCEEEEEeccCCCCcc--HHHHHHHHH-hcCCCEEEEccccchHHHHHHHHHHcCCCCcEEecC
Confidence 3455677778655433222 22233 233444444 567899999999899999999999999876676643
No 138
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=85.07 E-value=7.5 Score=30.79 Aligned_cols=98 Identities=12% Similarity=0.046 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhh-ccCcceE-EEEcCC--------cc-
Q 045172 47 EKNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVD-KRRFGCL-VVVSDD--------SD- 114 (157)
Q Consensus 47 ~kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~-~r~v~cl-vLVSDD--------sD- 114 (157)
+.+.+.+.+-+.+.-| ..+-..|++.|+.+-.||+++.. .+..+.+-+. ...+-|- ..++++ ++
T Consensus 59 ~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~----~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~ 134 (214)
T TIGR03333 59 EEITSFVLETAEIREGFREFVAFINEHGIPFYVISGGMDF----FVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCD 134 (214)
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHCCCeEEEECCCcHH----HHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCc
Confidence 3555544443445445 56677788889999999999871 2222222220 1112110 122221 11
Q ss_pred ----------hHHHHHHHHHcCCeEEEEcCC-CchHHHhhhhccc
Q 045172 115 ----------FVEVFQEATLRWLKMVVVGDM-SDGALKRIANAFF 148 (157)
Q Consensus 115 ----------F~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~f 148 (157)
-..+++......=+++.|||+ +|-...+.||+.|
T Consensus 135 ~~~~~~cg~~K~~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~~ 179 (214)
T TIGR03333 135 GTCQNQCGCCKPSLIRKLSEPNDYHIVIGDSVTDVEAAKQSDLCF 179 (214)
T ss_pred cccccCCCCCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHhCCeeE
Confidence 246777666666789999999 7777778888876
No 139
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=85.04 E-value=1.7 Score=36.42 Aligned_cols=75 Identities=11% Similarity=0.037 Sum_probs=51.8
Q ss_pred HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHh
Q 045172 66 ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKR 142 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r 142 (157)
+.-|-+.|..+..+.+- ..+..++ .. -..=|+++.+|-. .+-.++++.|+++|.++|.|-+.....|.+
T Consensus 61 ~~~l~~~g~~~~~~~~~-----~~~~~~~--~~-~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~ 132 (321)
T PRK11543 61 AATLASTGTPAFFVHPA-----EALHGDL--GM-IESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGL 132 (321)
T ss_pred HHHHHcCCCceeecChH-----HHhhCCc--Cc-cCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHH
Confidence 44567788888776431 1111111 11 1233788888865 566778889999999999999986789999
Q ss_pred hhhccc
Q 045172 143 IANAFF 148 (157)
Q Consensus 143 ~AD~~f 148 (157)
.||.-|
T Consensus 133 ~ad~~l 138 (321)
T PRK11543 133 AAKAVL 138 (321)
T ss_pred hCCEEE
Confidence 999977
No 140
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=84.76 E-value=3.3 Score=31.81 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=50.7
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcce----EE-------EEc----CCcchHHHHH
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGC----LV-------VVS----DDSDFVEVFQ 120 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~c----lv-------LVS----DDsDF~~~lr 120 (157)
++|--| .-+-..|+.+ +.+-.||.++.. ....+.+ ..|++. .+ ++. ........++
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~----~~~~~l~---~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~ 138 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYE----FAGPLMR---QLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVK 138 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHH----HHHHHHH---HcCCchhhcceEEECCCCeEECccccccchHHHHHH
Confidence 344444 3566778888 888889999982 1122222 223221 11 111 1134556777
Q ss_pred HHHHcCCeEEEEcCC-CchHHHhhhhcccch
Q 045172 121 EATLRWLKMVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 121 ~Arer~l~tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
.....+-.+|.|||+ +|-...+.|++.+.|
T Consensus 139 ~~~~~~~~~v~iGDs~~D~~~~~aa~~~v~~ 169 (205)
T PRK13582 139 ALKSLGYRVIAAGDSYNDTTMLGEADAGILF 169 (205)
T ss_pred HHHHhCCeEEEEeCCHHHHHHHHhCCCCEEE
Confidence 777788899999999 554567777766543
No 141
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=84.56 E-value=2.9 Score=31.85 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=36.7
Q ss_pred HHHHHhhccCcceEEEEc--CCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 93 YMVAMVDKRRFGCLVVVS--DDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 93 ~~~~~~~~r~v~clvLVS--DDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.++.++. |+++|-+||- ||+|-..++.+|.++|+...+++|.
T Consensus 46 EaTRvLL-RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 46 EATRVLL-RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred HHHHHHH-hcCCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 4556664 8999999996 6789999999999999999999997
No 142
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=84.51 E-value=1.3 Score=37.34 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=54.2
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALK 141 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~ 141 (157)
++.-|-+.|..+..+.+. +.. ......+ ..-|+++.+|-. .+-.++++.|+++|++||.|-+.....|.
T Consensus 65 ~~~~l~~~g~~~~~~~~~----~~~--~~~~~~~--~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la 136 (326)
T PRK10892 65 MAATFASTGTPSFFVHPG----EAA--HGDLGMV--TPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMA 136 (326)
T ss_pred HHHHHhcCCceeEEeChH----Hhh--ccccccC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCccc
Confidence 344566788888775321 111 1111222 233788899864 77888999999999999999999778999
Q ss_pred hhhhccc
Q 045172 142 RIANAFF 148 (157)
Q Consensus 142 r~AD~~f 148 (157)
+.||..|
T Consensus 137 ~~ad~~l 143 (326)
T PRK10892 137 RAADIHL 143 (326)
T ss_pred ccCCEEE
Confidence 9999988
No 143
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=84.46 E-value=2.5 Score=35.62 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHHhhceEEE-EecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEc
Q 045172 67 DELKRAWFWVR-MVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVG 133 (157)
Q Consensus 67 ~eLrRAGv~V~-~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVG 133 (157)
.+|++.|+.|- .+.-.|..+|.. ..+..+. ..+.|+|++.+..+|.+.+++.+++.|+..-+++
T Consensus 170 ~~~~~~G~~vv~~~~~~~~~~D~~--~~v~~ik-~a~pD~v~~~~~~~~~~~~~~~~~~~G~~~~~~~ 234 (357)
T cd06337 170 AALADAGYKLVDPGRFEPGTDDFS--SQINAFK-REGVDIVTGFAIPPDFATFWRQAAQAGFKPKIVT 234 (357)
T ss_pred HHHHhCCcEEecccccCCCCCcHH--HHHHHHH-hcCCCEEEeCCCccHHHHHHHHHHHCCCCCCeEE
Confidence 45667888764 334455677744 2233333 6889999999999999999999999999754443
No 144
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=84.38 E-value=4.6 Score=32.34 Aligned_cols=68 Identities=16% Similarity=0.053 Sum_probs=45.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHc-CCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLR-WLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer-~l~tVVVGd~ 135 (157)
.|+..++++.|+.+..++.. ...+ ..+..+.+.+.++|.+++.+-..+ ..+...+++. +...|++|..
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~-~~~~---~~~~i~~l~~~~vdgiI~~~~~~~-~~~~~~~~~~~~~PiV~i~~~ 90 (265)
T cd06354 22 EGLERAAKELGIEYKYVESK-SDAD---YEPNLEQLADAGYDLIVGVGFLLA-DALKEVAKQYPDQKFAIIDAV 90 (265)
T ss_pred HHHHHHHHHcCCeEEEEecC-CHHH---HHHHHHHHHhCCCCEEEEcCcchH-HHHHHHHHHCCCCEEEEEecc
Confidence 47788999999999887443 2222 234455555899999999863311 1344444543 8899999864
No 145
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=84.20 E-value=1.9 Score=35.36 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhcCccc----CCC----cHHH----HHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC-
Q 045172 46 MEKNKMAASAILTPKV----GYG----FADE----LKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD- 112 (157)
Q Consensus 46 ~~kY~~Aar~~l~pkv----gyg----la~e----LrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD- 112 (157)
.+..++++..+...+- |.| +|.+ |-|-|+.+....| ..........+ ..=|+++++|-.
T Consensus 115 ~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~------~~~~~~~~~~~--~~~D~vI~iS~sG 186 (284)
T PRK11302 115 PSAINRAVDLLTQAKKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDD------IVMQRMSCMNS--SDGDVVVLISHTG 186 (284)
T ss_pred HHHHHHHHHHHHcCCeEEEEEcchHHHHHHHHHHHHHhcCCceEecCC------HHHHHHHHHhC--CCCCEEEEEeCCC
Confidence 4556666666655442 222 2322 5567776665432 21111111111 233777777654
Q ss_pred --cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 113 --SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 113 --sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
.+...+++.|+++|+++|+|.+ ....|.+.||.-|.
T Consensus 187 ~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~ 224 (284)
T PRK11302 187 RTKSLVELAQLARENGATVIAITS-AGSPLAREATLALT 224 (284)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEe
Confidence 4566788999999999999998 46789999998773
No 146
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=83.63 E-value=5.5 Score=34.77 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=53.5
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~ 137 (157)
|..+|++-|. .|-.|.|+- ..+..+...+.+.+...|+++.+. |-.++.+. .++..+++.+...|| ||.++.
T Consensus 17 l~~~l~~~g~~~~lvvt~~~-~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~ 95 (374)
T cd08189 17 LPAAISQLGVKKVLIVTDKG-LVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSV 95 (374)
T ss_pred HHHHHHhcCCCeEEEEeCcc-hhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 6778888774 566667743 444556677888887778876654 33345554 777888888998888 999865
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
......
T Consensus 96 ~D~aK~ 101 (374)
T cd08189 96 IDCAKA 101 (374)
T ss_pred HHHHHH
Confidence 555544
No 147
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=83.62 E-value=4.3 Score=33.25 Aligned_cols=75 Identities=15% Similarity=-0.002 Sum_probs=52.8
Q ss_pred hcCcccCCC------cHHHHHhhceEEEE-ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 56 ILTPKVGYG------FADELKRAWFWVRM-VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 56 ~l~pkvgyg------la~eLrRAGv~V~~-V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
++.+...|| +...+++.|+.|-. ..-.|...|.. ..+..+. ..+.|.|++.+...+-+.+++.+++.|+.
T Consensus 142 il~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~--~~v~~l~-~~~pd~v~~~~~~~~~~~~~~~~~~~G~~ 218 (312)
T cd06346 142 TTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYS--SEVAAAA-AGGPDALVVIGYPETGSGILRSAYEQGLF 218 (312)
T ss_pred EEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHH--HHHHHHH-hcCCCEEEEecccchHHHHHHHHHHcCCC
Confidence 344555555 44677788987643 34445566655 4555555 57899999999999999999999999997
Q ss_pred EEEEc
Q 045172 129 MVVVG 133 (157)
Q Consensus 129 tVVVG 133 (157)
.-++|
T Consensus 219 ~~~~~ 223 (312)
T cd06346 219 DKFLL 223 (312)
T ss_pred CceEe
Confidence 54554
No 148
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=83.60 E-value=7.2 Score=30.20 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=45.9
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+.+.+...++ .......+.+...++|.+++.+.+++=. ...+.+.+...|+++..
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~~dgiii~~~~~~~~--~~~~~~~~ipvv~~~~~ 87 (269)
T cd06288 20 LGAQDAAREHGYLLLVVNTGGDD---ELEAEAVEALLDHRVDGIIYATMYHREV--TLPPELLSVPTVLLNCY 87 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEecCCCChh--HHHHHhcCCCEEEEecc
Confidence 36677888899998887655543 2233444445578999999998654422 22346689999999864
No 149
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=83.59 E-value=7.7 Score=30.89 Aligned_cols=78 Identities=13% Similarity=-0.009 Sum_probs=45.7
Q ss_pred cCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC---eEEEEcCC-C
Q 045172 61 VGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL---KMVVVGDM-S 136 (157)
Q Consensus 61 vgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l---~tVVVGd~-~ 136 (157)
.|+|+ .+|++.|+.+-.++.+|+. .... .+...|+..+.-..- ++-..+...+..-|+ .++.|||+ +
T Consensus 39 D~~~~-~~L~~~Gi~laIiT~k~~~----~~~~---~l~~lgi~~~f~~~k-pkp~~~~~~~~~l~~~~~ev~~iGD~~n 109 (169)
T TIGR02726 39 DGMGV-IVLQLCGIDVAIITSKKSG----AVRH---RAEELKIKRFHEGIK-KKTEPYAQMLEEMNISDAEVCYVGDDLV 109 (169)
T ss_pred hHHHH-HHHHHCCCEEEEEECCCcH----HHHH---HHHHCCCcEEEecCC-CCHHHHHHHHHHcCcCHHHEEEECCCHH
Confidence 34444 4789999999999999982 2222 233456654444332 222344444444555 59999998 5
Q ss_pred chHHHhhhhcc
Q 045172 137 DGALKRIANAF 147 (157)
Q Consensus 137 ~~~L~r~AD~~ 147 (157)
|-...+.|.+.
T Consensus 110 Di~~~~~ag~~ 120 (169)
T TIGR02726 110 DLSMMKRVGLA 120 (169)
T ss_pred HHHHHHHCCCe
Confidence 54455555443
No 150
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=83.54 E-value=7.7 Score=33.87 Aligned_cols=79 Identities=13% Similarity=0.047 Sum_probs=56.5
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCch
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSDG 138 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~~ 138 (157)
|..++++.|=.|-.|.|+-......+..++.+.+...|+++.+. |..++.+. ++++.+|+.+...|| ||.++..
T Consensus 17 l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~i 96 (380)
T cd08185 17 LGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSM 96 (380)
T ss_pred HHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 55677776766777787654334678888999997778887665 55566666 566788888998888 9998654
Q ss_pred HHHhh
Q 045172 139 ALKRI 143 (157)
Q Consensus 139 ~L~r~ 143 (157)
.....
T Consensus 97 D~aK~ 101 (380)
T cd08185 97 DTAKA 101 (380)
T ss_pred HHHHH
Confidence 44444
No 151
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=83.46 E-value=8.7 Score=29.52 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=46.2
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC---eEEEEcCC
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL---KMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l---~tVVVGd~ 135 (157)
+...++..|+.|..+..-|... ......+.++. ..+.+.+++.+...+...+++.|++.|+ ..+++.+.
T Consensus 160 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~l~-~~~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~i~~~~ 231 (298)
T cd06269 160 LEEELEKNGICVAFVESIPDGS-EDIRRLLKELK-SSTARVIVVFSSEEDALRLLEEAVELGMMTGYHWIITDL 231 (298)
T ss_pred HHHHHHHCCeeEEEEEEcCCCH-HHHHHHHHHHH-hcCCcEEEEEechHHHHHHHHHHHHcCCCCCeEEEEECh
Confidence 3445556788888776655432 22333333333 4566888888888999999999999988 66666665
No 152
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=83.28 E-value=5.1 Score=35.70 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=46.0
Q ss_pred HHHHhhceEEEE---ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcC
Q 045172 67 DELKRAWFWVRM---VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 67 ~eLrRAGv~V~~---V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd 134 (157)
.++++.|+-|-. ++..|...|. ...+.++....+.+.||+.+...+...+++.|++.|+..+.||-
T Consensus 196 ~~~~~~gi~i~~~~~i~~~~~~~d~--~~~l~~l~~~~~a~vVvl~~~~~~~~~ll~~a~~~g~~~~wigs 264 (458)
T cd06375 196 QEARLRNICIATSEKVGRSADRKSY--DSVIRKLLQKPNARVVVLFTRSEDARELLAAAKRLNASFTWVAS 264 (458)
T ss_pred HHHHHCCeeEEEEEEecCCCCHHHH--HHHHHHHhccCCCEEEEEecChHHHHHHHHHHHHcCCcEEEEEe
Confidence 557778977643 4444444343 33333333235889999999999999999999999999766754
No 153
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=83.21 E-value=11 Score=30.78 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCc
Q 045172 46 MEKNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 46 ~~kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpq 84 (157)
...|+......+.|--| ..+-..|+..|+.+=.++.++.
T Consensus 96 ~~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~ 135 (248)
T PLN02770 96 EALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPR 135 (248)
T ss_pred HHHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCH
Confidence 34455544444555555 5566678889999999999986
No 154
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=83.11 E-value=3.4 Score=33.29 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=46.5
Q ss_pred CCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 62 GYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 62 gygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
-.|+..+++..|+.+-+.+...+ .+ .+...++|.+++++.+.+- +.++.+.+.+..+|+||..
T Consensus 26 ~~~i~~~~~~~gy~~~~~~~~~~-~~---------~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~ 88 (269)
T cd06287 26 AAAAAESALERGLALCLVPPHEA-DS---------PLDALDIDGAILVEPMADD-PQVARLRQRGIPVVSIGRP 88 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCc-hh---------hhhccCcCeEEEecCCCCC-HHHHHHHHcCCCEEEeCCC
Confidence 36888999999999988754321 11 2336799999999865443 5667778889999999864
No 155
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=82.72 E-value=6 Score=34.68 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=56.3
Q ss_pred HhhcCcccCCC------cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchHH---HHHH
Q 045172 54 SAILTPKVGYG------FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFVE---VFQE 121 (157)
Q Consensus 54 r~~l~pkvgyg------la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~~---~lr~ 121 (157)
|...+|++-|| +..+|++-|. .|-.|.| +...+..+..++.+.+...|+++.+. |..++.... .+..
T Consensus 2 ~~~~~~~i~~G~g~l~~l~~~l~~~g~~~~livt~-~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~ 80 (377)
T cd08188 2 RKFVAPEIIFGRGALKLAGRYARRLGAKKVLLVSD-PGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAEL 80 (377)
T ss_pred CCccCCceEECcCHHHHHHHHHHHcCCCeEEEEeC-cchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 45567777665 4456666663 4455666 44445556777888887778877654 445566654 4677
Q ss_pred HHHcCCeEEE-EcCCCchHHHh
Q 045172 122 ATLRWLKMVV-VGDMSDGALKR 142 (157)
Q Consensus 122 Arer~l~tVV-VGd~~~~~L~r 142 (157)
+++.+...|| ||.++......
T Consensus 81 ~~~~~~d~IIaiGGGsviD~AK 102 (377)
T cd08188 81 YLENGCDVIIAVGGGSPIDCAK 102 (377)
T ss_pred HHhcCCCEEEEeCCchHHHHHH
Confidence 7887777666 88886544443
No 156
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=82.56 E-value=7.2 Score=31.90 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=44.5
Q ss_pred HHHHHhhceEEEEecCCCc---cHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcCC
Q 045172 66 ADELKRAWFWVRMVLVKPQ---DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGDM 135 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpq---AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd~ 135 (157)
..+++..|+-|-....-|. ..| +...+..+. ..+.+.+++.+...|...+++.|++.|+ ..++++++
T Consensus 181 ~~~~~~~gi~v~~~~~~~~~~~~~d--~~~~l~~l~-~~~~~vvv~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~ 252 (348)
T cd06350 181 EEELEKNGICIAFVEAIPPSSTEED--IKRILKKLK-SSTARVIVVFGDEDDALRLFCEAYKLGMTGKYWIISTD 252 (348)
T ss_pred HHHHHHCCCcEEEEEEccCCCcHHH--HHHHHHHHH-hCCCcEEEEEeCcHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 3456667766654332232 344 334444444 5677999999999999999999999998 34455554
No 157
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=82.53 E-value=3.3 Score=34.53 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=49.4
Q ss_pred cHHHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcC
Q 045172 65 FADELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd 134 (157)
+..+|++.|+.|-.+. -.|.+.|. ...+.++. +.+.+.|++.+...+++.+++.+++.|++.-++|.
T Consensus 158 ~~~~~~~~G~~v~~~~~~~~~~~d~--s~~i~~i~-~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (347)
T cd06335 158 LTAALAARGLKPVAVEWFNWGDKDM--TAQLLRAK-AAGADAIIIVGNGPEGAQIANGMAKLGWKVPIISH 225 (347)
T ss_pred HHHHHHHcCCeeEEEeeecCCCccH--HHHHHHHH-hCCCCEEEEEecChHHHHHHHHHHHcCCCCcEecc
Confidence 3467788898865432 22345554 35555555 57899999999999999999999999998766663
No 158
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=82.52 E-value=2.4 Score=36.63 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=41.8
Q ss_pred CcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccch
Q 045172 102 RFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 102 ~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
.=|++|.+|-. .+..+.++.|+++|.+||.|-...+..|.+.||.-+..
T Consensus 131 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~~ 182 (299)
T PRK05441 131 AKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIEV 182 (299)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEc
Confidence 34899999865 67888999999999999999988678999999998743
No 159
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=82.46 E-value=2.4 Score=36.65 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=41.3
Q ss_pred CcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccch
Q 045172 102 RFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 102 ~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
.=|++|.+|-. .+..++++.|+++|.+|+.|.......|.+.||+.+..
T Consensus 126 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 126 KNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 34999999965 56678899999999999999887667899999998854
No 160
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=82.33 E-value=18 Score=29.02 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=42.7
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccC--cceEEEEcCCc-----chHHHHHHHHHcCCe
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRR--FGCLVVVSDDS-----DFVEVFQEATLRWLK 128 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~--v~clvLVSDDs-----DF~~~lr~Arer~l~ 128 (157)
+.|--| ..+-..|+..|+.+=.++.+|.. ....+++.+.-.+ ++ .|+.||+. +=..+++.++.-|+.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~----~~~~~l~~~gl~~~f~d-~ii~~~~~~~~KP~p~~~~~a~~~l~~~ 172 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTRE----MMDVVAPEAALQGYRPD-YNVTTDDVPAGRPAPWMALKNAIELGVY 172 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHH----HHHHHHHHHHhcCCCCc-eEEccccCCCCCCCHHHHHHHHHHcCCC
Confidence 445444 45667888899999999999862 2222332221112 13 33445442 323445555666763
Q ss_pred ----EEEEcCC
Q 045172 129 ----MVVVGDM 135 (157)
Q Consensus 129 ----tVVVGd~ 135 (157)
+++|||+
T Consensus 173 ~~~~~l~IGDs 183 (253)
T TIGR01422 173 DVAACVKVGDT 183 (253)
T ss_pred CchheEEECCc
Confidence 8999998
No 161
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=81.97 E-value=6.5 Score=34.70 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=53.5
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~ 137 (157)
|..++++-|. .|-.|.| +......+..++.+.+...|+++.+. |..++.+. ..++.+|+.+...|| ||.++.
T Consensus 22 l~~~~~~~g~~~~livt~-~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 22 AMNMMADYGFTRTLIVTD-NMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSP 100 (383)
T ss_pred HHHHHHhcCCCEEEEEcC-cchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 5677888784 5556677 44444667778899887788876544 54466666 667788889999888 999865
Q ss_pred hHHHh
Q 045172 138 GALKR 142 (157)
Q Consensus 138 ~~L~r 142 (157)
-....
T Consensus 101 iD~AK 105 (383)
T PRK09860 101 HDCAK 105 (383)
T ss_pred HHHHH
Confidence 43333
No 162
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=81.84 E-value=3.6 Score=33.31 Aligned_cols=68 Identities=7% Similarity=-0.069 Sum_probs=46.9
Q ss_pred CcHHHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcC
Q 045172 64 GFADELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd 134 (157)
++...+++.|+.+-.... .+.+.| ....+.+.+ ..+.|+|++.+++.+-..+++.+++.|++.=++|-
T Consensus 152 ~~~~~~~~~G~~v~~~~~~~~~~~d--~~~~~~~l~-~~~pdaIi~~~~~~~~~~~~~~l~~~g~~~p~~~~ 220 (312)
T cd06333 152 ELKALAPKYGIEVVADERYGRTDTS--VTAQLLKIR-AARPDAVLIWGSGTPAALPAKNLRERGYKGPIYQT 220 (312)
T ss_pred HHHHHHHHcCCEEEEEEeeCCCCcC--HHHHHHHHH-hCCCCEEEEecCCcHHHHHHHHHHHcCCCCCEEee
Confidence 345667777876543222 233444 344566666 46789999999998888899999999998766643
No 163
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=81.76 E-value=0.92 Score=35.64 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=53.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHH-----HcCCeEEEEcCCCc
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEAT-----LRWLKMVVVGDMSD 137 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Ar-----er~l~tVVVGd~~~ 137 (157)
..|...|+.+|+.|..+.-=-. .......++.+.+....++++++-|. +-+..+++... -.++..++||..+-
T Consensus 130 ~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS~-~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta 207 (231)
T PF02602_consen 130 PDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTSP-SAVRAFLELLKKNGALLKRVPIVAIGPRTA 207 (231)
T ss_dssp HHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESSH-HHHHHHHHHSSGHHHHHTTSEEEESSHHHH
T ss_pred HHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECCH-HHHHHHHHHhHhhhhhhhCCEEEEECHHHH
Confidence 3478899999999988744333 44557778888886667777666555 44555555544 57899999998864
Q ss_pred hHHH
Q 045172 138 GALK 141 (157)
Q Consensus 138 ~~L~ 141 (157)
.++.
T Consensus 208 ~~l~ 211 (231)
T PF02602_consen 208 KALR 211 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 164
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=81.69 E-value=4.6 Score=33.09 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=45.7
Q ss_pred HHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEE
Q 045172 66 ADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 66 a~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVV 132 (157)
...|++.|+.|-.. .-.|+..|.. ..+.++. ..+.|.+++.+.+.++..+++.+++.|++.-++
T Consensus 162 ~~~~~~~g~~v~~~~~~~~~~~d~~--~~v~~l~-~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 226 (345)
T cd06338 162 REKAEAAGLEVVYDETYPPGTADLS--PLISKAK-AAGPDAVVVAGHFPDAVLLVRQMKELGYNPKAL 226 (345)
T ss_pred HHHHHHcCCEEEEEeccCCCccchH--HHHHHHH-hcCCCEEEECCcchhHHHHHHHHHHcCCCCCEE
Confidence 34678889887542 3334555633 3444444 688999999999999999999999999874333
No 165
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=81.37 E-value=3 Score=35.13 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=40.7
Q ss_pred CcceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 102 RFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 102 ~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
.=|+++.+|-. ++..+.++.|+++|.+||.|.......|.+.||.-+.
T Consensus 118 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I~ 168 (257)
T cd05007 118 ERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAIA 168 (257)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEE
Confidence 44899999864 6788889999999999999988767899999998773
No 166
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=81.10 E-value=10 Score=29.26 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=44.5
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhh-ccCcceEEEEcCC-----cc---hHHHHHHHHHcC
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVD-KRRFGCLVVVSDD-----SD---FVEVFQEATLRW 126 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~-~r~v~clvLVSDD-----sD---F~~~lr~Arer~ 126 (157)
..|--| ..+-..|+..|+.+-+++..+.. ...++.+.+. ..-+++ ++-+++ ++ |..+++......
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~----~~~~~l~~~~l~~~f~~-~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 166 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTP----FVAPLLEALGIADYFSV-VIGGDSLPNKKPDPAPLLLACEKLGLDP 166 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHH----HHHHHHHHcCCccCccE-EEcCCCCCCCCcChHHHHHHHHHcCCCh
Confidence 334444 45666778889999999988752 2223333221 112343 222222 12 333333333333
Q ss_pred CeEEEEcCC-CchHHHhhhhc
Q 045172 127 LKMVVVGDM-SDGALKRIANA 146 (157)
Q Consensus 127 l~tVVVGd~-~~~~L~r~AD~ 146 (157)
-++++|||+ ++-...+.|++
T Consensus 167 ~~~i~igD~~~Di~~a~~~g~ 187 (226)
T PRK13222 167 EEMLFVGDSRNDIQAARAAGC 187 (226)
T ss_pred hheEEECCCHHHHHHHHHCCC
Confidence 468999998 55555555655
No 167
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=80.93 E-value=4 Score=34.00 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=49.8
Q ss_pred hcCcccCCCc------HHHHHhhceEEEEecCCC-ccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 56 ILTPKVGYGF------ADELKRAWFWVRMVLVKP-QDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 56 ~l~pkvgygl------a~eLrRAGv~V~~V~dkp-qAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
++.+...||- ...++++|+.|-.+..-| .+.|.. .++.++. ..+.|.|++....++...+++.+++.|+.
T Consensus 149 ~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~--~~i~~l~-~~~~d~v~~~~~~~~~~~~~~~~~~~G~~ 225 (347)
T cd06340 149 LVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLT--SEVLKLK-AANPDAILPASYTNDAILLVRTMKEQRVE 225 (347)
T ss_pred EEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchH--HHHHHHH-hcCCCEEEEcccchhHHHHHHHHHHcCCC
Confidence 4445445552 346888998886543333 344443 3444444 57899999999999999999999999996
Q ss_pred E
Q 045172 129 M 129 (157)
Q Consensus 129 t 129 (157)
.
T Consensus 226 ~ 226 (347)
T cd06340 226 P 226 (347)
T ss_pred C
Confidence 4
No 168
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=80.92 E-value=7.5 Score=33.54 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=47.0
Q ss_pred cHHHHHhhceEEEEecCCC--ccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC-eEEEEcC
Q 045172 65 FADELKRAWFWVRMVLVKP--QDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL-KMVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkp--qAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l-~tVVVGd 134 (157)
+..+|++.|+-|-...--| +..+......+.++. ..+.+.|++.++.++-..+++.|++.|+ ..+.||.
T Consensus 196 ~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~-~~~~dvIil~~~~~~~~~il~qa~~~g~~~~~~i~~ 267 (410)
T cd06363 196 FSELIANTGICIAYQGLIPLDTDPETDYQQILKQIN-QTKVNVIVVFASRQPAEAFFNSVIQQNLTGKVWIAS 267 (410)
T ss_pred HHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHh-cCCCeEEEEEcChHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3467888897664322111 112334445555555 6789999999999999999999999999 4444553
No 169
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=80.87 E-value=5.5 Score=32.07 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=42.1
Q ss_pred ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcC
Q 045172 73 WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGD 134 (157)
Q Consensus 73 Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd 134 (157)
|..|......+...|.+ ..+..+. .-+.|.|++.++..+-..+++.+++.|+ +.-++|-
T Consensus 160 ~~~~~~~~~~~~~~d~~--~~i~~l~-~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 220 (333)
T cd06332 160 GEVVEEVYTPLGQLDFS--AELAQIR-AAKPDAVFVFLPGGMAVNFVKQYDQAGLKKKIPLYGP 220 (333)
T ss_pred EEEeeEEecCCCCcchH--HHHHHHH-hcCCCEEEEecccchHHHHHHHHHHcCcccCCceecc
Confidence 55555545555666654 2344433 6788999999888999999999999999 7656664
No 170
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=80.75 E-value=8.4 Score=30.12 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=54.1
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecCCC--------ccHHHHHHHHHHHHhhccCcceE--EEEc-----CCcch----H
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLVKP--------QDADVLLRNYMVAMVDKRRFGCL--VVVS-----DDSDF----V 116 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~dkp--------qAAD~AL~~~~~~~~~~r~v~cl--vLVS-----DDsDF----~ 116 (157)
+.|--| ..+-..|+..|+.+=.|+.++ .+...+....+.+++...|+. | +.+| ++... .
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~ 106 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKI 106 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCH
Confidence 455555 566788999999999999875 233344556677777777887 4 4455 44222 3
Q ss_pred HHHHHHHH-cCC---eEEEEcCC-CchHHHhhh
Q 045172 117 EVFQEATL-RWL---KMVVVGDM-SDGALKRIA 144 (157)
Q Consensus 117 ~~lr~Are-r~l---~tVVVGd~-~~~~L~r~A 144 (157)
+++..+-+ -|+ .++.|||+ +|-...+.|
T Consensus 107 ~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~a 139 (161)
T TIGR01261 107 KLLEPYLKKNLIDKARSYVIGDRETDMQLAENL 139 (161)
T ss_pred HHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHC
Confidence 45555544 443 48999998 433334433
No 171
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=80.39 E-value=4.2 Score=29.61 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=32.7
Q ss_pred CcceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhh
Q 045172 102 RFGCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIAN 145 (157)
Q Consensus 102 ~v~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD 145 (157)
.-|+++.+|- ..+-.+.++.|+++|.++|+|-+. +.|...||
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~--~~l~~~~~ 87 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG--GKLLEMAR 87 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCC--chHHHHHH
Confidence 4478888884 456778888999999999998754 35888887
No 172
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=79.60 E-value=7.5 Score=32.60 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHHHHhhceEEEEecCCC-ccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe---EEEEcCC
Q 045172 66 ADELKRAWFWVRMVLVKP-QDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK---MVVVGDM 135 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkp-qAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~---tVVVGd~ 135 (157)
...|+..|+.|-....-| .+.|.+ .++..+. .-+.|.|++.+.-.+.+.+++.+++.|+. ..++|.+
T Consensus 154 ~~~~~~~G~~vv~~~~~~~~~~D~~--~~v~~l~-~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 224 (348)
T cd06355 154 KAQLESLGGEVVGEEYLPLGHTDFQ--SIINKIK-AAKPDVVVSTVNGDSNVAFFKQLKAAGITASKVPVLSFS 224 (348)
T ss_pred HHHHHHcCCeEEeeEEecCChhhHH--HHHHHHH-HhCCCEEEEeccCCchHHHHHHHHHcCCCccCCeeEEcc
Confidence 346888898876544333 466665 4555555 57899999999888999999999999996 3455543
No 173
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=79.34 E-value=13 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCc
Q 045172 47 EKNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 47 ~kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpq 84 (157)
+.|+....+-.+|-.| ..+-..|++.|+.+-.++.++.
T Consensus 84 ~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~ 122 (229)
T PRK13226 84 QRYEALIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPE 122 (229)
T ss_pred HHHHHhhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCH
Confidence 4444433333455555 5677788889998888888876
No 174
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=78.80 E-value=8.1 Score=31.75 Aligned_cols=66 Identities=8% Similarity=-0.060 Sum_probs=47.0
Q ss_pred HHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe---EEEEcC
Q 045172 66 ADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK---MVVVGD 134 (157)
Q Consensus 66 a~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~---tVVVGd 134 (157)
...++++|+.|-.+ .-.|...|. ...+.++. ..+.|.|++.++-.+...+++.+++.|+. ..++|.
T Consensus 153 ~~~~~~~G~~vv~~~~~~~~~~d~--~~~v~~~~-~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 222 (333)
T cd06331 153 RALLEELGGEVVGEEYLPLGTSDF--GSVIEKIK-AAGPDVVLSTLVGDSNVAFYRQFAAAGLDADRIPILSL 222 (333)
T ss_pred HHHHHHcCCEEEEEEEecCCcccH--HHHHHHHH-HcCCCEEEEecCCCChHHHHHHHHHcCCCcCCCeeEEc
Confidence 34577889877433 223445554 35555555 57899999999999999999999999996 444444
No 175
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=78.46 E-value=6.6 Score=33.63 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=48.4
Q ss_pred HHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 66 ADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 66 a~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
...++++|+-|-.. .-.|.+.|. -..+..+. ..+.|.|++.+...|+..+++.+++.|++.-++|-.
T Consensus 182 ~~~~~~~G~~v~~~~~~~~g~~D~--~~~v~~l~-~~~~d~v~~~~~~~~~~~~~k~~~~~G~~~~~i~~~ 249 (369)
T PRK15404 182 KDGLKKAGANVVFFEGITAGDKDF--SALIAKLK-KENVDFVYYGGYHPEMGQILRQAREAGLKTQFMGPE 249 (369)
T ss_pred HHHHHHcCCEEEEEEeeCCCCCch--HHHHHHHH-hcCCCEEEECCCchHHHHHHHHHHHCCCCCeEEecC
Confidence 45678888887543 333445663 33444455 578999988888889999999999999987666653
No 176
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=78.36 E-value=5.6 Score=33.19 Aligned_cols=65 Identities=11% Similarity=-0.005 Sum_probs=47.6
Q ss_pred cHHHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCeEEEE
Q 045172 65 FADELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~tVVV 132 (157)
+-..|+++|+.|-.... .+.+.|.+ ..+..+. ..+.+.|++.+... +...+++.+++.|++.-++
T Consensus 158 ~~~~l~~~G~~vv~~~~~~~~~~D~s--~~i~~i~-~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 224 (347)
T cd06336 158 YKAAWEAAGGKVVSEEPYDPGTTDFS--PIVTKLL-AEKPDVIFLGGPSPAPAALVIKQARELGFKGGFL 224 (347)
T ss_pred HHHHHHHcCCEEeeecccCCCCcchH--HHHHHHH-hcCCCEEEEcCCCchHHHHHHHHHHHcCCCccEE
Confidence 44678899987754333 33456653 4444444 68899999999999 9999999999999986444
No 177
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=78.35 E-value=11 Score=31.06 Aligned_cols=63 Identities=17% Similarity=0.083 Sum_probs=43.4
Q ss_pred cHHHHHhhceEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 65 FADELKRAWFWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
+..+|++.|+.|.....-|. +.+.-+...+.++. ..+.+.|++.++..+...+++.|++.|+.
T Consensus 155 ~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~-~~~~dvvi~~~~~~~~~~~~~~a~~~g~~ 218 (350)
T cd06366 155 LVDALQEAGIEISYRAAFPPSANDDDITDALKKLK-EKDSRVIVVHFSPDLARRVFCEAYKLGMM 218 (350)
T ss_pred HHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHh-cCCCeEEEEECChHHHHHHHHHHHHcCCc
Confidence 44677778887765432222 11233344444444 46789999999999999999999999994
No 178
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=78.32 E-value=8.7 Score=31.17 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=39.7
Q ss_pred HHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 68 ELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 68 eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
++...|..|....-.|.. | .....+.++. ..+.+.|+|.+...+...+++.|++.|+.
T Consensus 149 ~~~~~g~~v~~~~~~~~~-~-d~~~~l~~i~-~~~~d~Vi~~~~~~~~~~i~~qa~~~g~~ 206 (324)
T cd06368 149 ALSPKGIQVTVRRLDDDT-D-MYRPLLKEIK-REKERRIILDCSPERLKEFLEQAVEVGMM 206 (324)
T ss_pred hhccCCceEEEEEecCCc-h-HHHHHHHHHh-hccCceEEEECCHHHHHHHHHHHHHhccc
Confidence 344446555543322322 2 3445555555 67899999999999999999999999985
No 179
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=78.23 E-value=5.8 Score=32.93 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=47.9
Q ss_pred cHHHHHh--hceEEEEecCCCc-c-HHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 65 FADELKR--AWFWVRMVLVKPQ-D-ADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 65 la~eLrR--AGv~V~~V~dkpq-A-AD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+-..|++ +|+.|-...-.|. . .|.. ..+.++. ..+.|.|++.+...+...+++.+++.|+..-++|-.
T Consensus 163 ~~~~~~~~~~G~~vv~~~~~~~~~~~d~~--~~i~~l~-~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 234 (342)
T cd06329 163 FKAMLAAKRPDIQIVGEDLHPLGKVKDFS--PYVAKIK-ASGADTVITGNWGNDLLLLVKQAADAGLKLPFYTPY 234 (342)
T ss_pred HHHHHHhhcCCcEEeceeccCCCCCCchH--HHHHHHH-HcCCCEEEEcccCchHHHHHHHHHHcCCCceEEecc
Confidence 5567777 8887754333333 3 4433 2344445 578999999998889999999999999987676643
No 180
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=78.05 E-value=11 Score=32.62 Aligned_cols=66 Identities=8% Similarity=0.062 Sum_probs=44.9
Q ss_pred HHHHHhhceEEEE---ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEc
Q 045172 66 ADELKRAWFWVRM---VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVG 133 (157)
Q Consensus 66 a~eLrRAGv~V~~---V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVG 133 (157)
..++++.|+-|-. ++..|.+.|.. ..+.++....+.+.++|.+...+...+++.|++.|+ +.+.||
T Consensus 193 ~~~~~~~gi~i~~~~~~~~~~~~~d~~--~~l~~l~~~~~a~viil~~~~~~~~~~~~~a~~~g~~~~~~~i~ 263 (452)
T cd06362 193 EKLAAERGICIAGSEKIPSSATEEEFD--NIIRKLLSKPNARVVVLFCREDDIRGLLAAAKRLNAEGHFQWIA 263 (452)
T ss_pred HHHHHHCCeeEEEEEEcCCCCCHHHHH--HHHHHHhhcCCCeEEEEEcChHHHHHHHHHHHHcCCcCceEEEE
Confidence 3567778876543 34444555543 333333322468999999999999999999999999 445554
No 181
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=78.03 E-value=7.6 Score=33.01 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=54.9
Q ss_pred hcCcccCCC------cHHHHHhhceEEEEecCC-CccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 56 ILTPKVGYG------FADELKRAWFWVRMVLVK-PQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 56 ~l~pkvgyg------la~eLrRAGv~V~~V~dk-pqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
++.+...|| +...++.+|+.|-....- |.+.|. ...+..+. ..+.|.|++.....+-+.+++.+++.|++
T Consensus 145 iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~--~~~v~~i~-~~~pd~V~~~~~~~~~~~~~~~~~~~G~~ 221 (351)
T cd06334 145 LVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQ--KAQWLQIR-RSGPDYVILWGWGVMNPVAIKEAKRVGLD 221 (351)
T ss_pred EEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccH--HHHHHHHH-HcCCCEEEEecccchHHHHHHHHHHcCCC
Confidence 455555554 345678889887554332 334554 45555666 68999999999999999999999999998
Q ss_pred EEEEcCC
Q 045172 129 MVVVGDM 135 (157)
Q Consensus 129 tVVVGd~ 135 (157)
.-++|..
T Consensus 222 ~~~~~~~ 228 (351)
T cd06334 222 DKFIGNW 228 (351)
T ss_pred ceEEEee
Confidence 6676643
No 182
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.86 E-value=21 Score=28.06 Aligned_cols=51 Identities=24% Similarity=0.218 Sum_probs=31.8
Q ss_pred HHHHHhhc-cCcceEEEEcCCcchHHHHHHHHHcCCe--EEEEc-CCCchHHHhhh
Q 045172 93 YMVAMVDK-RRFGCLVVVSDDSDFVEVFQEATLRWLK--MVVVG-DMSDGALKRIA 144 (157)
Q Consensus 93 ~~~~~~~~-r~v~clvLVSDDsDF~~~lr~Arer~l~--tVVVG-d~~~~~L~r~A 144 (157)
.+.+++.. ..++++ ++.+|.-..++++.+++.|++ ..||| |.++..+....
T Consensus 175 ~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~~~~~ivg~d~~~~~~~~i~ 229 (274)
T cd06311 175 VMQDLLTKFPKIDAV-WAHDDDMAVGVLAAIKQAGRTDIKFVVGGAGSKDMIKMIM 229 (274)
T ss_pred HHHHHHHhCCCcCEE-EECCCcHHHHHHHHHHHcCCCCCceEEEeCCCHHHHHHHH
Confidence 34444532 235654 445555577899999999985 45665 77777765443
No 183
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=77.85 E-value=4.9 Score=34.34 Aligned_cols=52 Identities=33% Similarity=0.415 Sum_probs=42.2
Q ss_pred cCcceEEEEcCCcchH-HHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchhhhhcC
Q 045172 101 RRFGCLVVVSDDSDFV-EVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWSDLLMG 156 (157)
Q Consensus 101 r~v~clvLVSDDsDF~-~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~ev~~G 156 (157)
.|+|-+++=|...||. .+|+.|+.-.-+.||||.. ++.+. .-.|+|..+..|
T Consensus 114 ~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~N---a~~r~-~~~~~w~~~~~~ 166 (218)
T PF07279_consen 114 KGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYN---AFSRS-TNGFSWRSVLRG 166 (218)
T ss_pred cCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEec---cccCC-cCCccHHHhcCC
Confidence 4789999999999999 9999999866678999986 34443 356899988765
No 184
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=77.59 E-value=4.9 Score=33.09 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=48.7
Q ss_pred cHHHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 65 FADELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+-..+++.|+.|-... -.+.+.|.. ..+.+.. ..+.+.+++.+...+...+++.+++.|++..++|-.
T Consensus 157 ~~~~~~~~g~~v~~~~~~~~~~~d~~--~~v~~i~-~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 225 (344)
T cd06348 157 FQKALRDQGLNLVTVQTFQTGDTDFQ--AQITAVL-NSKPDLIVISALAADGGNLVRQLRELGYNGLIVGGN 225 (344)
T ss_pred HHHHHHHcCCEEEEEEeeCCCCCCHH--HHHHHHH-hcCCCEEEECCcchhHHHHHHHHHHcCCCCceeccc
Confidence 3456677888776542 223344443 3344444 678999999999999999999999999998777643
No 185
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=77.53 E-value=4.3 Score=36.20 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=36.2
Q ss_pred cCcceEEEEcCCcch-----HHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSDF-----VEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsDF-----~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...++|+++..|... ...++.||++|.+.|||.-. .......||.|++
T Consensus 169 ~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr-~s~ta~~Ad~~l~ 221 (461)
T cd02750 169 YNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPD-YSPSAKHADLWVP 221 (461)
T ss_pred hcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCC-CCcchhhcCEEec
Confidence 357999999888533 24566799999999999544 4566788999874
No 186
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=77.23 E-value=13 Score=32.39 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=51.0
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~ 137 (157)
|..+|++-|. .|-.|.|+ .....-+..++.+.+...|++..+. |..++... .++..+|+.+...|| ||.++.
T Consensus 15 l~~~l~~~g~~~~liv~~~-~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 15 LPAECAELGIKRPLIVTDP-GLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred HHHHHHHcCCCeEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 5566777674 45556663 3334445667888887778877665 55566665 556667888888877 999865
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
......
T Consensus 94 iD~aK~ 99 (370)
T cd08192 94 LDLAKA 99 (370)
T ss_pred HHHHHH
Confidence 555444
No 187
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=77.19 E-value=16 Score=29.21 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=44.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC-eEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL-KMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l-~tVVVGd~ 135 (157)
.|+..+++..|+.+-+..... |.....++.+.+...++|+|++.+.+.++.... . .+.+. .+|++|+.
T Consensus 55 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~-~-~~~~~~pvv~~~~~ 123 (309)
T PRK11041 55 RGIEVTAAEHGYLVLIGDCAH---QNQQEKTFVNLIITKQIDGMLLLGSRLPFDASK-E-EQRNLPPMVMANEF 123 (309)
T ss_pred HHHHHHHHHCCCEEEEEeCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCChHHHH-H-HHhcCCCEEEEccc
Confidence 478888999999887653322 455555666666678999999987665554322 2 23444 56777764
No 188
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=76.98 E-value=9.7 Score=33.44 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred cCcccCCC------cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHH
Q 045172 57 LTPKVGYG------FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATL 124 (157)
Q Consensus 57 l~pkvgyg------la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Are 124 (157)
.+|++-|| |..++++-|. .|-.|.| +...+.-+...+.+.+...|+++.+. |..++.+. ..++.+++
T Consensus 7 ~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd-~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~ 85 (382)
T PRK10624 7 LNETAYFGRGAIGALTDEVKRRGFKKALIVTD-KTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKA 85 (382)
T ss_pred CCCeEEECcCHHHHHHHHHHhcCCCEEEEEeC-cchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHh
Confidence 35555444 5567777674 4555566 45555557888888887778887665 44455554 56688889
Q ss_pred cCCeEEE-EcCCCchHHHhh
Q 045172 125 RWLKMVV-VGDMSDGALKRI 143 (157)
Q Consensus 125 r~l~tVV-VGd~~~~~L~r~ 143 (157)
.+...|| ||.++.......
T Consensus 86 ~~~D~IIaiGGGS~iD~aK~ 105 (382)
T PRK10624 86 SGADYLIAIGGGSPQDTCKA 105 (382)
T ss_pred cCCCEEEEeCChHHHHHHHH
Confidence 8998887 999865555543
No 189
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=76.76 E-value=23 Score=26.18 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=51.0
Q ss_pred HHHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchH----HHHHHHHHcCC--eEEEEcCC-Cc
Q 045172 66 ADELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV----EVFQEATLRWL--KMVVVGDM-SD 137 (157)
Q Consensus 66 a~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~----~~lr~Arer~l--~tVVVGd~-~~ 137 (157)
+.-|+.+||.|.-.. +.|. +.+.+.+...+.+++||=|.+.... ++++..++.|. -.+++|.. .+
T Consensus 20 ~~~l~~~G~~vi~lG~~vp~-------e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~ 92 (122)
T cd02071 20 ARALRDAGFEVIYTGLRQTP-------EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPP 92 (122)
T ss_pred HHHHHHCCCEEEECCCCCCH-------HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCH
Confidence 456899999998863 4443 2355555578999999988776554 45666777755 23556643 22
Q ss_pred hHHHh----hhhccc----chhhhhc
Q 045172 138 GALKR----IANAFF----SWSDLLM 155 (157)
Q Consensus 138 ~~L~r----~AD~~f----sW~ev~~ 155 (157)
....+ ..|.+| +|++++.
T Consensus 93 ~~~~~~~~~G~d~~~~~~~~~~~~~~ 118 (122)
T cd02071 93 EDYELLKEMGVAEIFGPGTSIEEIID 118 (122)
T ss_pred HHHHHHHHCCCCEEECCCCCHHHHHH
Confidence 22322 345555 6776653
No 190
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=76.75 E-value=6.4 Score=31.93 Aligned_cols=66 Identities=9% Similarity=-0.033 Sum_probs=44.5
Q ss_pred cHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEc
Q 045172 65 FADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVG 133 (157)
Q Consensus 65 la~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVG 133 (157)
+...++..|+.+... .-.+...|. ...+.+++ ..+.+.|++.+++.+...+++.+++.|++.=++|
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~d~--~~~~~~l~-~~~~dav~~~~~~~~a~~~i~~~~~~G~~~~~~~ 222 (336)
T cd06326 156 VEKALAARGLKPVATASYERNTADV--AAAVAQLA-AARPQAVIMVGAYKAAAAFIRALRKAGGGAQFYN 222 (336)
T ss_pred HHHHHHHcCCCeEEEEeecCCcccH--HHHHHHHH-hcCCCEEEEEcCcHHHHHHHHHHHhcCCCCcEEE
Confidence 556677778654443 222333443 33444444 4578999998888899999999999999775554
No 191
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=76.74 E-value=7.4 Score=32.28 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=47.4
Q ss_pred cHHHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE-EEEcCC
Q 045172 65 FADELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM-VVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t-VVVGd~ 135 (157)
+..+++.+|+-|-.... .+.+.|+. ..+..+. ..+.|.|++.....+...+++.+++.|+.. +++++.
T Consensus 164 ~~~~~~~~G~~vv~~~~~~~~~~d~~--~~v~~i~-~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 233 (362)
T cd06343 164 LKDGLGDAGLEIVAETSYEVTEPDFD--SQVAKLK-AAGADVVVLATTPKFAAQAIRKAAELGWKPTFLLSSV 233 (362)
T ss_pred HHHHHHHcCCeEEEEeeecCCCccHH--HHHHHHH-hcCCCEEEEEcCcHHHHHHHHHHHHcCCCceEEEEec
Confidence 44567788887654333 33455654 3344444 689999999999999999999999999864 344443
No 192
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=76.71 E-value=15 Score=29.64 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=52.4
Q ss_pred CcHHHHHhhceEE-EEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe---EEEEcCC-Cch
Q 045172 64 GFADELKRAWFWV-RMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK---MVVVGDM-SDG 138 (157)
Q Consensus 64 gla~eLrRAGv~V-~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~---tVVVGd~-~~~ 138 (157)
++...|+++|+.| ..+.-.|...|.. ..+.++. +.+.|.+++.++.++-..+++.+++.|++ +.+.|.. .+.
T Consensus 154 ~~~~~~~~~G~~vv~~~~~~~~~~d~~--~~~~~l~-~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (343)
T PF13458_consen 154 AFRKALEAAGGKVVGEIRYPPGDTDFS--ALVQQLK-SAGPDVVVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSLDDA 230 (343)
T ss_dssp HHHHHHHHTTCEEEEEEEE-TTSSHHH--HHHHHHH-HTTTSEEEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGGSSH
T ss_pred HHHHHHhhcCceeccceecccccccch--HHHHHHh-hcCCCEEEEeccchhHHHHHHHHHhhccccccceeeccccCcH
Confidence 4677889999886 2333345555544 2333333 57999999999999999999999999998 3444443 444
Q ss_pred HHHhhh
Q 045172 139 ALKRIA 144 (157)
Q Consensus 139 ~L~r~A 144 (157)
.|....
T Consensus 231 ~l~~~~ 236 (343)
T PF13458_consen 231 SLQQLG 236 (343)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 454444
No 193
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=76.31 E-value=40 Score=27.48 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=42.3
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCc-ceEEEEcCCc-----chHHHHHHHHHcCC--
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRF-GCLVVVSDDS-----DFVEVFQEATLRWL-- 127 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v-~clvLVSDDs-----DF~~~lr~Arer~l-- 127 (157)
+.|--| -.+-..|+..|+.+=.++.+|... ...+++.+.-.+. .-.++.|||. +=..++..+++-|+
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~----~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~ 175 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREM----MDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYD 175 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH----HHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCC
Confidence 344444 345678889999999999888721 2222222211222 1234445542 32345555566665
Q ss_pred --eEEEEcCC
Q 045172 128 --KMVVVGDM 135 (157)
Q Consensus 128 --~tVVVGd~ 135 (157)
.+++|||+
T Consensus 176 ~~e~l~IGDs 185 (267)
T PRK13478 176 VAACVKVDDT 185 (267)
T ss_pred CcceEEEcCc
Confidence 37999998
No 194
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=76.19 E-value=17 Score=30.68 Aligned_cols=62 Identities=8% Similarity=-0.036 Sum_probs=46.8
Q ss_pred cHHHHHhhceEEEE---ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 65 FADELKRAWFWVRM---VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 65 la~eLrRAGv~V~~---V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
+...|..+|+.|-. ++-.|.+.|.+ .++..+. ..+.|.|++.+...+...+++.+++.|+..
T Consensus 152 ~~~~~~~~G~~vv~~~~~~~~~~~~d~s--~~v~~l~-~~~pd~V~~~~~~~~~~~~~~~~~~~G~~~ 216 (360)
T cd06357 152 MRDLLEQRGGEVLGERYLPLGASDEDFA--RIVEEIR-EAQPDFIFSTLVGQSSYAFYRAYAAAGFDP 216 (360)
T ss_pred HHHHHHHcCCEEEEEEEecCCCchhhHH--HHHHHHH-HcCCCEEEEeCCCCChHHHHHHHHHcCCCc
Confidence 55677788987643 34445577764 4455555 578999999999999999999999999973
No 195
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=76.18 E-value=11 Score=28.98 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.6
Q ss_pred cHHHHHhhceEEEEecCCCc
Q 045172 65 FADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq 84 (157)
+-..|+..|+.+-.++..+.
T Consensus 93 ~L~~l~~~g~~~~i~S~~~~ 112 (213)
T TIGR01449 93 TLGALRAKGLRLGLVTNKPT 112 (213)
T ss_pred HHHHHHHCCCeEEEEeCCCH
Confidence 44677888998888888775
No 196
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=76.12 E-value=5 Score=34.73 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=39.6
Q ss_pred ceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchh
Q 045172 104 GCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWS 151 (157)
Q Consensus 104 ~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~ 151 (157)
+++|.+|- ..|-..+++.|+++|.+||.|-...+..|.+.||..+...
T Consensus 94 ~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ 144 (340)
T PRK11382 94 CAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQ 144 (340)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeC
Confidence 56777764 4678899999999999999997776789999999877544
No 197
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=76.03 E-value=7.9 Score=38.17 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccchh
Q 045172 116 VEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFSWS 151 (157)
Q Consensus 116 ~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fsW~ 151 (157)
..+++..++.|-.+..+||+ +|-.--+.||+.+.|.
T Consensus 620 ~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g 656 (917)
T TIGR01116 620 SELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG 656 (917)
T ss_pred HHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC
Confidence 56677777889888889999 7777779999999884
No 198
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=75.61 E-value=9.7 Score=29.87 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=43.6
Q ss_pred CCcHHHHHh-hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKR-AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrR-AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++.. .|+.+-.-+. |. ....+++..+++|.+++.+.+. ++++.+.+.+..+|.++..
T Consensus 18 ~gi~~~~~~~~g~~~~~~~~-----~~---~~~~~~l~~~~vdGiI~~~~~~---~~~~~l~~~~~PvV~~~~~ 80 (265)
T cd01543 18 RGIARYAREHGPWSIYLEPR-----GL---QEPLRWLKDWQGDGIIARIDDP---EMAEALQKLGIPVVDVSGS 80 (265)
T ss_pred HHHHHHHHhcCCeEEEEecc-----cc---hhhhhhccccccceEEEECCCH---HHHHHHhhCCCCEEEEeCc
Confidence 477888888 7887765332 11 4445556688999999876433 4567778889999999764
No 199
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=75.44 E-value=10 Score=27.96 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=34.7
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhcc-CcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKR-RFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r-~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
|+...++..|+.+..+..-+...+ .-.+.+.+.+... +.+.|++.+| .....+++.+++.|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~-~~a~~~~~~~~~~g~~ 207 (269)
T cd01391 144 GFKAALKKAGIEVVAIEYGDLDTE-KGFQALLQLLKAAPKPDAIFACND-EMAAGALKAAREAGLT 207 (269)
T ss_pred HHHHHHHhcCcEEEeccccCCCcc-ccHHHHHHHHhcCCCCCEEEEcCc-hHHHHHHHHHHHcCCC
Confidence 344555556644433222122221 2333455555333 5676666665 7788999999998873
No 200
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=75.03 E-value=8.3 Score=31.83 Aligned_cols=64 Identities=13% Similarity=-0.002 Sum_probs=44.5
Q ss_pred HHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEE
Q 045172 66 ADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 66 a~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVV 132 (157)
...+++.|+-|... .-.+.+.|.. ..+.++. ..+.+.|++.+...+...+++.+++.|++.-.+
T Consensus 165 ~~~~~~~G~~vv~~~~~~~~~~d~~--~~v~~l~-~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (344)
T cd06345 165 KALLPEAGLEVVSVERFSPDTTDFT--PILQQIK-AADPDVIIAGFSGNVGVLFTQQWAEQKVPIPTI 229 (344)
T ss_pred HHHHHHcCCeEEEEEecCCCCCchH--HHHHHHH-hcCCCEEEEeecCchHHHHHHHHHHcCCCCceE
Confidence 45678888876553 3333344432 3333444 578999999999999999999999999864333
No 201
>PRK09492 treR trehalose repressor; Provisional
Probab=75.02 E-value=15 Score=29.71 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=42.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+-..+..- |.....+..+.+..+++|++++++.++.-.+.+ .+.+...|+|+..
T Consensus 82 ~~i~~~~~~~gy~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~l---~~~~~pvv~i~~~ 148 (315)
T PRK09492 82 RTMLPAFYEQGYDPIIMESQF---SPEKVNEHLGVLKRRNVDGVILFGFTGITEEML---APWQDKLVLLARD 148 (315)
T ss_pred HHHHHHHHHcCCeEEEEecCC---ChHHHHHHHHHHHhcCCCEEEEeCCCcccHHHH---HhcCCCEEEEecc
Confidence 577889999999986654322 222334455556578999999997433222333 3445678888753
No 202
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=74.90 E-value=26 Score=24.52 Aligned_cols=50 Identities=10% Similarity=0.095 Sum_probs=35.6
Q ss_pred HHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCCchHHHh
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMSDGALKR 142 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r 142 (157)
+.+.+.....++++.++.+ ++-...++..+.+.+...+|+|-...+.+.+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~-~~~~~~I~~~~~~~~~dllviG~~~~~~~~~ 101 (124)
T cd01987 52 AEALRLAEELGAEVVTLPG-DDVAEAIVEFAREHNVTQIVVGKSRRSRWRE 101 (124)
T ss_pred HHHHHHHHHcCCEEEEEeC-CcHHHHHHHHHHHcCCCEEEeCCCCCchHHH
Confidence 4444555567777765544 4447889999999999999999985555543
No 203
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=74.66 E-value=20 Score=29.57 Aligned_cols=68 Identities=9% Similarity=-0.012 Sum_probs=41.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe-EEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK-MVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~-tVVVGd~ 135 (157)
.|+..++...|+.+-.... .. |..-..++.+.+...++|.+++++.+.+-. .+..+.+ +.. +|+++..
T Consensus 79 ~gi~~~~~~~g~~~~~~~~-~~--~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~-~~~~~~~-~~p~vV~i~~~ 147 (343)
T PRK10727 79 KAVEQVAYHTGNFLLIGNG-YH--NEQKERQAIEQLIRHRCAALVVHAKMIPDA-ELASLMK-QIPGMVLINRI 147 (343)
T ss_pred HHHHHHHHHcCCEEEEEeC-CC--CHHHHHHHHHHHHhcCCCEEEEecCCCChH-HHHHHHh-cCCCEEEEecC
Confidence 4677889999998865432 22 222333445545578999999997543332 2333333 566 7888754
No 204
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=74.16 E-value=6.3 Score=31.82 Aligned_cols=74 Identities=12% Similarity=0.019 Sum_probs=45.1
Q ss_pred cCCCcHHHHHhhceEEEEecCCCcc----------HHHHHHHHHHHHhh----ccC-cceEEEEcCCc-c----hHHHHH
Q 045172 61 VGYGFADELKRAWFWVRMVLVKPQD----------ADVLLRNYMVAMVD----KRR-FGCLVVVSDDS-D----FVEVFQ 120 (157)
Q Consensus 61 vgygla~eLrRAGv~V~~V~dkpqA----------AD~AL~~~~~~~~~----~r~-v~clvLVSDDs-D----F~~~lr 120 (157)
+|.-++.+|...|+.|+.+...|+. .|+.=...+...+. -.| ++.+++++.+. + ...++.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~~~~~~~~~i~ 90 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPDLAPPMIKFID 90 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCChhHHHHHHHH
Confidence 4566778888889888888666542 12211112222221 046 89998887642 2 336778
Q ss_pred HHHHcCCeEEEEcC
Q 045172 121 EATLRWLKMVVVGD 134 (157)
Q Consensus 121 ~Arer~l~tVVVGd 134 (157)
.|++.|++.+|.-.
T Consensus 91 aa~~~gv~~~V~~S 104 (285)
T TIGR03649 91 FARSKGVRRFVLLS 104 (285)
T ss_pred HHHHcCCCEEEEee
Confidence 88999998776643
No 205
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=74.05 E-value=8.7 Score=30.33 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=44.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+|+..+++..|+.+-.... ++ +.. .. ..++|.+++++..++ +.++.+.+.+..+|+++..
T Consensus 24 ~gi~~~~~~~g~~~~~~~~-~~--~~~-------~~-~~~vdgii~~~~~~~--~~~~~~~~~~~pvV~~~~~ 83 (270)
T cd01544 24 LGIEKRAQELGIELTKFFR-DD--DLL-------EI-LEDVDGIIAIGKFSQ--EQLAKLAKLNPNLVFVDSN 83 (270)
T ss_pred HHHHHHHHHcCCEEEEEec-cc--hhH-------Hh-ccCcCEEEEecCCCH--HHHHHHHhhCCCEEEECCC
Confidence 5788889999999877544 22 111 13 588999999986655 7788889999999999764
No 206
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=73.94 E-value=7.5 Score=31.96 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=46.9
Q ss_pred cHHHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcC
Q 045172 65 FADELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd 134 (157)
+...|+++|+.|-.... .+.+.|.. ..+.++. ..+.|.|++.+...+.+.+++.+++.|+ +..++|-
T Consensus 155 ~~~~~~~~G~~vv~~~~~~~~~~d~~--~~v~~l~-~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (334)
T cd06327 155 ARKVVKANGGKVVGSVRHPLGTSDFS--SYLLQAQ-ASGADVLVLANAGADTVNAIKQAAEFGLTKGQKLAGL 224 (334)
T ss_pred HHHHHHhcCCEEcCcccCCCCCccHH--HHHHHHH-hCCCCEEEEeccchhHHHHHHHHHHhCCccCCcEEEe
Confidence 44567778877643322 22344544 4555555 5789999999999999999999999999 4555554
No 207
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=73.87 E-value=19 Score=31.65 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=52.4
Q ss_pred cHHHHHhh---ce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcC
Q 045172 65 FADELKRA---WF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGD 134 (157)
Q Consensus 65 la~eLrRA---Gv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd 134 (157)
|..+|++. |. .+-.|.|+....-..+...+.+.+...|+++.+. |..++.+. .+++.+++.+...|| ||.
T Consensus 14 l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 93 (383)
T cd08186 14 IGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG 93 (383)
T ss_pred HHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44556665 54 5667777665444555677778887778877665 45445554 677778888887776 898
Q ss_pred CCchHHHhhh
Q 045172 135 MSDGALKRIA 144 (157)
Q Consensus 135 ~~~~~L~r~A 144 (157)
++.......+
T Consensus 94 GS~iD~aK~i 103 (383)
T cd08186 94 GSPIDSAKSA 103 (383)
T ss_pred ccHHHHHHHH
Confidence 8665555544
No 208
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=73.78 E-value=12 Score=36.89 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccc
Q 045172 116 VEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFS 149 (157)
Q Consensus 116 ~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fs 149 (157)
..+++..+++|-.+..+||+ +|-.-=+.||+.++
T Consensus 592 ~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIA 626 (867)
T TIGR01524 592 SRIIGLLKKAGHTVGFLGDGINDAPALRKADVGIS 626 (867)
T ss_pred HHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEE
Confidence 45667778899999999999 76555578898875
No 209
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=73.77 E-value=12 Score=36.38 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=51.5
Q ss_pred HHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhhh
Q 045172 67 DELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRIA 144 (157)
Q Consensus 67 ~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~A 144 (157)
.+|+++|+.|.+++ |.|++|- ......|++-+.==+...|=..+++..+++|-.+.++||+ +|---=..|
T Consensus 455 ~~Lr~~GI~vvMiTGDn~~TA~--------aIA~elGId~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~A 526 (679)
T PRK01122 455 AELRKMGIKTVMITGDNPLTAA--------AIAAEAGVDDFLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQA 526 (679)
T ss_pred HHHHHCCCeEEEECCCCHHHHH--------HHHHHcCCcEEEccCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhC
Confidence 46888898888885 6666332 1223456655433344556667889999999999999999 664444678
Q ss_pred hcccch
Q 045172 145 NAFFSW 150 (157)
Q Consensus 145 D~~fsW 150 (157)
|+.+.-
T Consensus 527 DVGIAM 532 (679)
T PRK01122 527 DVGVAM 532 (679)
T ss_pred CEeEEe
Confidence 888753
No 210
>PRK11914 diacylglycerol kinase; Reviewed
Probab=73.70 E-value=12 Score=31.38 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=24.2
Q ss_pred cCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCCchHHHhh
Q 045172 101 RRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMSDGALKRI 143 (157)
Q Consensus 101 r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~ 143 (157)
.+.|.||.+.-|--..+++.-+...++..-+|--+|.-.|.|.
T Consensus 63 ~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~ 105 (306)
T PRK11914 63 KGTDALVVVGGDGVISNALQVLAGTDIPLGIIPAGTGNDHARE 105 (306)
T ss_pred cCCCEEEEECCchHHHHHhHHhccCCCcEEEEeCCCcchhHHH
Confidence 5556666666666666666555555555555544444445443
No 211
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=73.62 E-value=8.2 Score=30.72 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHhhc-cC-----cceEEEEcCCcc-------hHHHHHHHHHcCCeEEEEcCC--CchHHHhhhh
Q 045172 85 DADVLLRNYMVAMVDK-RR-----FGCLVVVSDDSD-------FVEVFQEATLRWLKMVVVGDM--SDGALKRIAN 145 (157)
Q Consensus 85 AAD~AL~~~~~~~~~~-r~-----v~clvLVSDDsD-------F~~~lr~Arer~l~tVVVGd~--~~~~L~r~AD 145 (157)
..+-||.- +.+.++. .+ -..+||+||-.+ ..+..+.+++.|+++++||-+ ....|+..|.
T Consensus 86 ~~~~AL~~-a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~ 160 (192)
T cd01473 86 YIVEALKY-GLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAASENKLKLLAG 160 (192)
T ss_pred cHHHHHHH-HHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccccHHHHHHhcC
Confidence 45666654 3333432 11 355888888533 557788899999997777766 4467777774
No 212
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=73.06 E-value=3.9 Score=32.99 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCcHHHHHhhceEEEEec---CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH-------cCCeEEEE
Q 045172 63 YGFADELKRAWFWVRMVL---VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL-------RWLKMVVV 132 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~---dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are-------r~l~tVVV 132 (157)
..|+..|+..|+.|..++ ..|...+. ..+.+.+...++|++++-|..+ ...+++.... .+.+.|+|
T Consensus 131 ~~l~~~L~~~G~~v~~~~vY~~~~~~~~~---~~~~~~l~~~~~d~i~f~S~~~-~~~f~~~~~~~~~~~~l~~~~~v~I 206 (240)
T PRK09189 131 PVFEDRLAAAGIPFRVAECYDMLPVMYSP---ATLSAILGGAPFDAVLLYSRVA-ARRFFALMRLSIAPPADEKTRFLCL 206 (240)
T ss_pred chhHHHHHhCCCeeEEEEEEEeecCCCCh---HHHHHHHhcCCCCEEEEeCHHH-HHHHHHHHhhhcCcccccccCeEEe
Confidence 468999999998887763 22332222 2334555567899998888664 5555555432 35667899
Q ss_pred cCCCchHHHh
Q 045172 133 GDMSDGALKR 142 (157)
Q Consensus 133 Gd~~~~~L~r 142 (157)
|..+-.++..
T Consensus 207 g~~ta~al~~ 216 (240)
T PRK09189 207 SARVAAALPA 216 (240)
T ss_pred CHHHHHHHhh
Confidence 9886455543
No 213
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=72.95 E-value=5.7 Score=29.96 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEE
Q 045172 90 LRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 90 L~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVV 132 (157)
+-+++.....-+-=|+|+.+|.. +.-.+.++.||++|++||.|
T Consensus 91 ~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 91 FARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp HHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 33444444222444999999974 55677899999999999987
No 214
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=72.94 E-value=23 Score=29.28 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=41.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe-EEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK-MVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~-tVVVGd~ 135 (157)
.|+..+++..|+.+-....... .| -.....+.+...++|.+++++.+.+... +....+ ... .|+|+..
T Consensus 79 ~gi~~~~~~~gy~~~~~~~~~~-~~--~~~~~i~~l~~~~vdGiIi~~~~~~~~~-~~~~~~-~~p~vV~i~~~ 147 (346)
T PRK10401 79 KAVDLVAQQHQKYVLIGNSYHE-AE--KERHAIEVLIRQRCNALIVHSKALSDDE-LAQFMD-QIPGMVLINRV 147 (346)
T ss_pred HHHHHHHHHCCCEEEEEcCCCC-hH--HHHHHHHHHHhcCCCEEEEeCCCCChHH-HHHHHh-cCCCEEEEecc
Confidence 3788899999999876543222 22 2234444455789999999975443332 333333 344 6778764
No 215
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=72.92 E-value=4.8 Score=37.21 Aligned_cols=47 Identities=6% Similarity=0.052 Sum_probs=35.4
Q ss_pred CcceEEEEcCCcc-------------hHHHHHHHHHcCCeEEEEcCCCchHHHh-hhhcccc
Q 045172 102 RFGCLVVVSDDSD-------------FVEVFQEATLRWLKMVVVGDMSDGALKR-IANAFFS 149 (157)
Q Consensus 102 ~v~clvLVSDDsD-------------F~~~lr~Arer~l~tVVVGd~~~~~L~r-~AD~~fs 149 (157)
..+||+++..|.- +...+++|+++|.+.|||.=. ...... .||.|++
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr-~s~ta~~~AD~~l~ 229 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPR-YTDTAAVLAAEWIP 229 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCC-CCccccccCCEEEC
Confidence 4899999987743 347888999999999999544 234454 6999885
No 216
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=72.66 E-value=16 Score=31.52 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=51.1
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcch---HHHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDF---VEVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF---~~~lr~Arer~l~tVV-VGd~~~ 137 (157)
|+.+|++.|. .|-.|.++ ...+......+.+.+...+++..+. +..+++. ..+++.+++.+...|| ||.++.
T Consensus 14 l~~~l~~~~~~~~lvv~~~-~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 92 (370)
T cd08551 14 LGEEIKNLGGRKALIVTDP-GLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSV 92 (370)
T ss_pred HHHHHHHcCCCeEEEEeCc-chhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 6677887764 44455664 4444566677888887777877654 4345554 4667777888888777 888865
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
......
T Consensus 93 ~D~AK~ 98 (370)
T cd08551 93 LDTAKA 98 (370)
T ss_pred HHHHHH
Confidence 554444
No 217
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=72.50 E-value=19 Score=31.59 Aligned_cols=80 Identities=15% Similarity=0.067 Sum_probs=54.2
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcch---HHHHHHHHHcCCeEEE-EcCCCch
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDF---VEVFQEATLRWLKMVV-VGDMSDG 138 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF---~~~lr~Arer~l~tVV-VGd~~~~ 138 (157)
|.+++++-|-.+-.|.+++...-.-+..++.+.+...|++..+. |.-++.. .+.++.+++.+...|| ||.++..
T Consensus 20 l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 99 (382)
T cd08187 20 LGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVI 99 (382)
T ss_pred HHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 56677776767777888665444456678888887778876543 3335444 4567888888887776 8988655
Q ss_pred HHHhhh
Q 045172 139 ALKRIA 144 (157)
Q Consensus 139 ~L~r~A 144 (157)
.....+
T Consensus 100 D~aK~i 105 (382)
T cd08187 100 DSAKAI 105 (382)
T ss_pred HHHHHH
Confidence 555543
No 218
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=72.47 E-value=18 Score=25.78 Aligned_cols=86 Identities=16% Similarity=0.206 Sum_probs=46.2
Q ss_pred hhcCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhh-ccCcceEEEEcCCcc--------hHHHHHHHHH
Q 045172 55 AILTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVD-KRRFGCLVVVSDDSD--------FVEVFQEATL 124 (157)
Q Consensus 55 ~~l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~-~r~v~clvLVSDDsD--------F~~~lr~Are 124 (157)
..++|--| -.+-..|+..|+.+-.|+..+. .......+.+- ..-++.++ .|+|.. |-.+++..--
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~----~~~~~~l~~~~~~~~f~~i~-~~~~~~~~Kp~~~~~~~~~~~~~~ 148 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSR----ERIERVLERLGLDDYFDEII-SSDDVGSRKPDPDAYRRALEKLGI 148 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEH----HHHHHHHHHTTHGGGCSEEE-EGGGSSSSTTSHHHHHHHHHHHTS
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCc----cccccccccccccccccccc-ccchhhhhhhHHHHHHHHHHHcCC
Confidence 44455554 4455678889999999999875 11122222220 11245444 555433 3444444422
Q ss_pred cCCeEEEEcCCCchHHHhhhhc
Q 045172 125 RWLKMVVVGDMSDGALKRIANA 146 (157)
Q Consensus 125 r~l~tVVVGd~~~~~L~r~AD~ 146 (157)
..-.+++|||.. ..+..+-.+
T Consensus 149 ~p~~~~~vgD~~-~d~~~A~~~ 169 (176)
T PF13419_consen 149 PPEEILFVGDSP-SDVEAAKEA 169 (176)
T ss_dssp SGGGEEEEESSH-HHHHHHHHT
T ss_pred CcceEEEEeCCH-HHHHHHHHc
Confidence 334599999983 455444333
No 219
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=72.44 E-value=13 Score=31.27 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=42.9
Q ss_pred HHHHhhc--eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEE----EEcC
Q 045172 67 DELKRAW--FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMV----VVGD 134 (157)
Q Consensus 67 ~eLrRAG--v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tV----VVGd 134 (157)
..+++.| +-|....-.+...+.-....+.++- ..+.+.|+|.+...+-..+++.|++.|+.+- ++|+
T Consensus 147 ~~~~~~g~~i~v~~~~~~~~~~~~d~~~~L~~ik-~~~~~~iil~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~ 219 (382)
T cd06380 147 DYLREKDNKWQVTARRVDNVTDEEEFLRLLEDLD-RRKEKRIVLDCESERLNKILEQIVDVGKNRKGYHYILAN 219 (382)
T ss_pred HHHhccCCceEEEEEEecCCCcHHHHHHHHHHhh-cccceEEEEECCHHHHHHHHHHHHHhhhcccceEEEEcc
Confidence 3456667 5555432221111223334444443 5688999999999999999999999998863 5554
No 220
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=72.19 E-value=6.6 Score=35.60 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=37.0
Q ss_pred cCcceEEEEcCCcc-----hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSD-----FVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsD-----F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...+||+++-.|.- +...++.|+++|.+.|||.=. .....+.||.|++
T Consensus 156 ~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr-~t~ta~~Ad~~l~ 208 (501)
T cd02766 156 VNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPY-RTATAARADLHIQ 208 (501)
T ss_pred hcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCC-CCccHHHhCeeec
Confidence 35689999976643 446677899999999999654 3466788999985
No 221
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=72.08 E-value=7.9 Score=25.55 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=38.2
Q ss_pred HHHHHhh-ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC---cchHHHHHHHHHcCCeEEEEc
Q 045172 66 ADELKRA-WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD---SDFVEVFQEATLRWLKMVVVG 133 (157)
Q Consensus 66 a~eLrRA-Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD---sDF~~~lr~Arer~l~tVVVG 133 (157)
...|.+. |..|..+++ +. .- +......-..=|+++++|-. .+-..+++.|+++|.++|+|-
T Consensus 17 ~~~l~~~~~~~~~~~~~-~~---~~---~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 17 ALELLELTGIEVVALIA-TE---LE---HASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHhcccCCceEEeCC-cH---HH---HHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3445566 888877653 21 11 11111112345888888855 567778999999999999875
No 222
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=71.94 E-value=7.3 Score=33.71 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred ceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccch
Q 045172 104 GCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 104 ~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
|++|.+|-. ++-.+.++.|+++|.+||.|....+..|.+.||..+..
T Consensus 129 DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~aD~~I~~ 178 (296)
T PRK12570 129 DVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIADIAISP 178 (296)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEee
Confidence 899999864 55678899999999999999887667899999988753
No 223
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=71.71 E-value=10 Score=31.11 Aligned_cols=59 Identities=7% Similarity=-0.003 Sum_probs=42.3
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..+++..|+.+-+..+... + . ...++|.|++++.+++ ++++.+.+.+..+|+++..
T Consensus 87 ~~i~~~~~~~g~~~~~~~~~~~--~---------~-~~~~vDgiI~~~~~~~--~~~~~l~~~~~pvV~~~~~ 145 (327)
T PRK10339 87 HGIETQCEKLGIELTNCYEHSG--L---------P-DIKNVTGILIVGKPTP--ALRAAASALTDNICFIDFH 145 (327)
T ss_pred HHHHHHHHHCCCEEEEeecccc--c---------c-ccccCCEEEEeCCCCH--HHHHHHHhcCCCEEEEeCC
Confidence 4677889999998876544322 1 0 1478999999986443 6778888889999999754
No 224
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=71.56 E-value=7.9 Score=28.03 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHH-----------HHHHHhhccCcceEEEEcCCcchHH
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRN-----------YMVAMVDKRRFGCLVVVSDDSDFVE 117 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~-----------~~~~~~~~r~v~clvLVSDDsDF~~ 117 (157)
..++.+|+..|+.|...- |...+..... ...+.+ .+.||+|+.++...|..
T Consensus 20 ~~l~~~L~~~g~~V~~~D--P~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~vvl~t~h~~f~~ 81 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYD--PYVDEEEIKELGKLEGVEVCDDLEEAL--KGADAVVLATDHDEFRE 81 (106)
T ss_dssp HHHHHHHHHTT-EEEEE---TTSHHHHHHHHCHHHCEEEESSHHHHH--TTESEEEESS--GGGGC
T ss_pred HHHHHHHHHCCCEEEEEC--CccChHHHHhhCCccceEEecCHHHHh--cCCCEEEEEecCHHHhc
Confidence 457899999999988852 4444444433 233444 69999999999999987
No 225
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=71.54 E-value=24 Score=23.87 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=17.3
Q ss_pred ccCcceEEEEcCCcchHHHHHHHHHcCCe-EEEEcC
Q 045172 100 KRRFGCLVVVSDDSDFVEVFQEATLRWLK-MVVVGD 134 (157)
Q Consensus 100 ~r~v~clvLVSDDsDF~~~lr~Arer~l~-tVVVGd 134 (157)
+.|+.+.+-.++ ..+..-++.|...|.. .++||+
T Consensus 29 ~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~ 63 (94)
T cd00861 29 AAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGK 63 (94)
T ss_pred HCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECC
Confidence 345554443332 3566666666666666 444554
No 226
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=71.48 E-value=6.1 Score=31.02 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=47.5
Q ss_pred CCCcHHHHHhhceEEEEecCCCcc---------------HHHHHHHHHHHHhhccCcceEEEEcC---Ccc---hHHHHH
Q 045172 62 GYGFADELKRAWFWVRMVLVKPQD---------------ADVLLRNYMVAMVDKRRFGCLVVVSD---DSD---FVEVFQ 120 (157)
Q Consensus 62 gygla~eLrRAGv~V~~V~dkpqA---------------AD~AL~~~~~~~~~~r~v~clvLVSD---DsD---F~~~lr 120 (157)
|-.++..|...|+.|+.+..+|.. +|..=...+...+ .|++++++++. +.. ...++.
T Consensus 11 G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al--~g~d~v~~~~~~~~~~~~~~~~~li~ 88 (233)
T PF05368_consen 11 GRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAAL--KGVDAVFSVTPPSHPSELEQQKNLID 88 (233)
T ss_dssp HHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHH--TTCSEEEEESSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHH--cCCceEEeecCcchhhhhhhhhhHHH
Confidence 344566666677777776555521 2222234555566 59999999998 444 457888
Q ss_pred HHHHcCCeEEEEcCC
Q 045172 121 EATLRWLKMVVVGDM 135 (157)
Q Consensus 121 ~Arer~l~tVVVGd~ 135 (157)
-|.+.|++.+|.++.
T Consensus 89 Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 89 AAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHT-SEEEESEE
T ss_pred hhhccccceEEEEEe
Confidence 999999999998776
No 227
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=71.21 E-value=30 Score=26.32 Aligned_cols=74 Identities=8% Similarity=-0.057 Sum_probs=43.7
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH-cC---CeEEEEcCC-CchH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL-RW---LKMVVVGDM-SDGA 139 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are-r~---l~tVVVGd~-~~~~ 139 (157)
.-.+|+..|+.+-.++.+|.. .+...+...|++.++--+ .+. .+.+..+.+ -| =.++.|||+ +|..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~-------~~~~~l~~~gi~~~~~~~-~~k-~~~~~~~~~~~~~~~~~~~~vGDs~~D~~ 106 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAK-------LVEDRCKTLGITHLYQGQ-SNK-LIAFSDILEKLALAPENVAYIGDDLIDWP 106 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCH-------HHHHHHHHcCCCEEEecc-cch-HHHHHHHHHHcCCCHHHEEEECCCHHHHH
Confidence 367899999999999999972 112233344565433222 222 455555543 33 358889998 5555
Q ss_pred HHhhhhcc
Q 045172 140 LKRIANAF 147 (157)
Q Consensus 140 L~r~AD~~ 147 (157)
..+.|.+.
T Consensus 107 ~~~~ag~~ 114 (154)
T TIGR01670 107 VMEKVGLS 114 (154)
T ss_pred HHHHCCCe
Confidence 55555443
No 228
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=71.21 E-value=23 Score=31.01 Aligned_cols=78 Identities=12% Similarity=-0.038 Sum_probs=51.5
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~ 137 (157)
+..++++.|. .|-.|.| +...+.-+..++.+.+...|+++.+. |..+++.. ++++.+|+.+...|| ||.++.
T Consensus 14 l~~~~~~~~~~r~livt~-~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 92 (375)
T cd08194 14 TGAVLADLGGKRPLIVTD-KVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSP 92 (375)
T ss_pred HHHHHHHcCCCeEEEEcC-cchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 5566676553 4666676 44444446677888887778887665 55566665 566677777887777 888865
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
....+.
T Consensus 93 ~D~AKa 98 (375)
T cd08194 93 IDTAKA 98 (375)
T ss_pred HHHHHH
Confidence 444443
No 229
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=71.20 E-value=8.6 Score=34.35 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=36.9
Q ss_pred cCcceEEEEcCCc------chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDS------DFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDs------DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...++|+++..|. .....++.||++|.+.|||.-. .......||.|++
T Consensus 159 ~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr-~s~ta~~Ad~~l~ 212 (477)
T cd02759 159 ENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPR-LTWLAARADLWLP 212 (477)
T ss_pred hcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCC-CChhhHhhCeeec
Confidence 4569999999884 3445677899999999888554 3566789999884
No 230
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=71.17 E-value=14 Score=33.11 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCc-----cHHHH---HHHHHHHHhhccCcc--eEEEEc-----C
Q 045172 48 KNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQ-----DADVL---LRNYMVAMVDKRRFG--CLVVVS-----D 111 (157)
Q Consensus 48 kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpq-----AAD~A---L~~~~~~~~~~r~v~--clvLVS-----D 111 (157)
-|+....+-+.|.-| ..+-.+|+.+|+.+-.|+.++. -.-.. ....+...+...++. . +.+| |
T Consensus 20 ~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~-i~i~~~~~sd 98 (354)
T PRK05446 20 DFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDE-VLICPHFPED 98 (354)
T ss_pred cccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceee-EEEeCCcCcc
Confidence 344445555666666 6778899999999999999732 11111 234566666666654 2 2333 3
Q ss_pred Ccch----HHHHHHHHHcC----CeEEEEcCC-CchHHHhhhhcc--------cchhhhh
Q 045172 112 DSDF----VEVFQEATLRW----LKMVVVGDM-SDGALKRIANAF--------FSWSDLL 154 (157)
Q Consensus 112 DsDF----~~~lr~Arer~----l~tVVVGd~-~~~~L~r~AD~~--------fsW~ev~ 154 (157)
++.. .+++..+.+.. -.++.|||+ +|....+.|-+. +.|++|.
T Consensus 99 ~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~~~~~~~i~ 158 (354)
T PRK05446 99 NCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYARETLNWDAIA 158 (354)
T ss_pred cCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECCCCCHHHHH
Confidence 3222 44666665543 569999998 555455544433 4676653
No 231
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=70.64 E-value=13 Score=24.71 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=26.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD 112 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD 112 (157)
+.++.+|++.|+.|.+-. .+. .+.+++..+- ..|+.++++|.++
T Consensus 18 ~~~~~~Lr~~g~~v~~d~-~~~----~~~~~~~~a~-~~g~~~~iiig~~ 61 (91)
T cd00860 18 KEVAKKLSDAGIRVEVDL-RNE----KLGKKIREAQ-LQKIPYILVVGDK 61 (91)
T ss_pred HHHHHHHHHCCCEEEEEC-CCC----CHHHHHHHHH-HcCCCEEEEECcc
Confidence 345777777777776632 222 3445554443 5777777777754
No 232
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=70.62 E-value=32 Score=28.74 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=20.6
Q ss_pred hcCcccC-CCcHHHHHhhceEEEEecCCCc
Q 045172 56 ILTPKVG-YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 56 ~l~pkvg-ygla~eLrRAGv~V~~V~dkpq 84 (157)
...|.-| -.+-.+|+..|+.+-+++.++.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~ 136 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPR 136 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCH
Confidence 3444434 3466778889999999998886
No 233
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=70.24 E-value=29 Score=23.15 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=34.9
Q ss_pred CCCccHHHHHHHHHHHHhhccCcceEEEEcCC--cchHHHHHHHHHcCCeEEEEcCC
Q 045172 81 VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD--SDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 81 dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD--sDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.||+ -.+..++.+.+ +...+-.+.|.|+ +| ++.|++.|++||.|..+
T Consensus 3 gKP~---p~~~~~a~~~~-~~~~~~~~~VGD~~~~D----i~~a~~~G~~~ilV~tG 51 (75)
T PF13242_consen 3 GKPS---PGMLEQALKRL-GVDPSRCVMVGDSLETD----IEAAKAAGIDTILVLTG 51 (75)
T ss_dssp STTS---HHHHHHHHHHH-TSGGGGEEEEESSTTTH----HHHHHHTTSEEEEESSS
T ss_pred CCCc---HHHHHHHHHHc-CCCHHHEEEEcCCcHhH----HHHHHHcCCcEEEECCC
Confidence 5777 56666677666 4445667778877 55 56789999999999887
No 234
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=70.21 E-value=8.6 Score=31.47 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=37.9
Q ss_pred cCcceEEEEcCCc---chHHHHHHHHHcCCeEEEEcCCCchHHHhh---hhccc
Q 045172 101 RRFGCLVVVSDDS---DFVEVFQEATLRWLKMVVVGDMSDGALKRI---ANAFF 148 (157)
Q Consensus 101 r~v~clvLVSDDs---DF~~~lr~Arer~l~tVVVGd~~~~~L~r~---AD~~f 148 (157)
..=|+++.+|..- +-..+++.|+++|.++|+|....++.|.+. ||+-+
T Consensus 108 ~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i 161 (196)
T PRK10886 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEI 161 (196)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEE
Confidence 3448888888753 466778899999999999988766788885 68765
No 235
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=69.94 E-value=30 Score=23.15 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=44.1
Q ss_pred CcHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEEE--cCCcchHHHHHHHHHcC--CeEEEEcCCCc
Q 045172 64 GFADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVV--SDDSDFVEVFQEATLRW--LKMVVVGDMSD 137 (157)
Q Consensus 64 gla~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLV--SDDsDF~~~lr~Arer~--l~tVVVGd~~~ 137 (157)
++...|++.|+ .|.++.+..+ +.+.+.+...+.+++= .++-+-.++++..+..+ ..+|++++..+
T Consensus 13 ~l~~~l~~~~~~~v~~~~~~~~---------~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 13 LLEKLLERAGYEEVTTASSGEE---------ALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHTTEEEEEEESSHHH---------HHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHHHHHHhCCCCEEEEECCHHH---------HHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 45677889999 8887666443 3334444556665543 35667778888888854 88999997743
No 236
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=69.86 E-value=6.3 Score=30.91 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=52.2
Q ss_pred cHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcc--hHHHHH----H-HHHcCCeEEEEcC
Q 045172 65 FADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD--FVEVFQ----E-ATLRWLKMVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD--F~~~lr----~-Arer~l~tVVVGd 134 (157)
|+..|+..|+.+-.+|. .|...+..|...+ +-+.....|+||..|-..- |...++ . ..-.+.+.++||+
T Consensus 3 l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l-~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG~ 81 (231)
T PF02602_consen 3 LAALLRALGAEVIELPLIEIEPLPDLASLEAAL-EQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVGP 81 (231)
T ss_dssp HHHHHHHTTEEEEEEESEEEEECCHHHHHHHHH-HHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESSH
T ss_pred HHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHH-HhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEcH
Confidence 68899999999887743 4544444454444 4443579999999998753 334343 1 1236888999999
Q ss_pred CCchHHHhh
Q 045172 135 MSDGALKRI 143 (157)
Q Consensus 135 ~~~~~L~r~ 143 (157)
.+..+|...
T Consensus 82 ~Ta~~l~~~ 90 (231)
T PF02602_consen 82 KTAEALREY 90 (231)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 876777664
No 237
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=69.69 E-value=18 Score=29.84 Aligned_cols=62 Identities=10% Similarity=-0.091 Sum_probs=45.9
Q ss_pred cHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 65 FADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 65 la~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
+...|+++|+.|-.. .-.|...|. ...+..+. +.+.|.|++.....+++.+++.+++.|+..
T Consensus 152 ~~~~~~~~G~~v~~~~~~~~~~~d~--~~~v~~l~-~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~ 214 (333)
T cd06358 152 AKRYIAELGGEVVGEEYVPLGTTDF--TSVLERIA-ASGADAVLSTLVGQDAVAFNRQFAAAGLRD 214 (333)
T ss_pred HHHHHHHcCCEEeeeeeecCChHHH--HHHHHHHH-HcCCCEEEEeCCCCchHHHHHHHHHcCCCc
Confidence 346788899887542 333456665 34444555 578899999999999999999999999974
No 238
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=69.56 E-value=34 Score=26.05 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=37.1
Q ss_pred CcHHHHHhh-ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEc
Q 045172 64 GFADELKRA-WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVG 133 (157)
Q Consensus 64 gla~eLrRA-Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVG 133 (157)
|+-..++++ |+.+..+...+..++. ....+..++....-...+++++|.....+++.+++.|+ ..-+||
T Consensus 142 gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l~~~g~~~~i~ivg 213 (267)
T cd01536 142 GFRDALKEYPDIEIVAVQDGNWDREK-ALQAMEDLLQANPDIDAIFAANDSMALGAVAALKAAGRKGDVKIVG 213 (267)
T ss_pred HHHHHHHhCCCcEEEEEecCCCcHHH-HHHHHHHHHHhCCCccEEEEecCCchHHHHHHHHhcCCCCCceEEe
Confidence 344556666 3544333211111111 23334444432222346778888888999999999987 344443
No 239
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=69.47 E-value=16 Score=30.65 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=43.2
Q ss_pred cHHHHHhhceEEEEe---cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe---EEEEcC
Q 045172 65 FADELKRAWFWVRMV---LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK---MVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~V---~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~---tVVVGd 134 (157)
+..+++..|+-|..+ +..+.+.|.. ..+.++. ..+ +.+++.+...+...+++.+++.|+. .+.||.
T Consensus 158 ~~~~~~~~G~~v~~~~~~~~~~~~~d~~--~~l~~i~-~~~-~vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~ 229 (389)
T cd06352 158 LEAALREFNLTVSHVVFMEDNSGAEDLL--EILQDIK-RRS-RIIIMCGSSEDVRELLLAAHDLGLTSGDYVFILI 229 (389)
T ss_pred HHHHHHhcCCeEEEEEEecCCccchhHH--HHHHHhh-hcc-eEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEE
Confidence 445667778777654 2222145543 2233333 345 8888888889999999999999995 666653
No 240
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=69.46 E-value=4.3 Score=31.77 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=44.5
Q ss_pred CCcHHHHHhhceEEEEec---CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH-------cCCeEEEE
Q 045172 63 YGFADELKRAWFWVRMVL---VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL-------RWLKMVVV 132 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~---dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are-------r~l~tVVV 132 (157)
..|+..|+..|..|..++ -.|...+. ......+....+|++++.|.. -+..+++.+.. .+++.++|
T Consensus 138 ~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~---~~~~~~~~~~~~d~ivftS~~-~v~~~~~~~~~~~~~~~~~~~~~~ai 213 (249)
T PRK05928 138 EVLGDTLEERGAEVDECEVYERVPPKLDG---AELLARLQSGEVDAVIFTSPS-TVRAFFSLAPELGRREWLLSCKAVVI 213 (249)
T ss_pred HHHHHHHHHCCCEEeEEEEEEeeCCCCCh---HHHHHHHHhCCCCEEEECCHH-HHHHHHHHhcccchhHHHhCCeEEEe
Confidence 458899999998877763 22221111 111122224688998887754 34444444433 26778889
Q ss_pred cCCCchHHHh
Q 045172 133 GDMSDGALKR 142 (157)
Q Consensus 133 Gd~~~~~L~r 142 (157)
|..+-.+|..
T Consensus 214 G~~Ta~~l~~ 223 (249)
T PRK05928 214 GERTAEALRE 223 (249)
T ss_pred CHHHHHHHHH
Confidence 9886555554
No 241
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=69.38 E-value=21 Score=31.25 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=52.0
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~ 137 (157)
|..+|++.|. .|-.|.|+ ......+..++.+.+...|+++.+. |..++... .+++.+++.+...|| ||.++.
T Consensus 19 l~~~l~~~g~~~~lvv~~~-~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 97 (377)
T cd08176 19 IGDELKNLGFKKALIVTDK-GLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSP 97 (377)
T ss_pred HHHHHHHhCCCeEEEECCc-hHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 5678888785 45556664 4333467778888887778887655 44466665 556667778887777 898865
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
......
T Consensus 98 iD~aK~ 103 (377)
T cd08176 98 HDCAKA 103 (377)
T ss_pred HHHHHH
Confidence 444443
No 242
>PRK06849 hypothetical protein; Provisional
Probab=69.35 E-value=12 Score=32.46 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=37.1
Q ss_pred cCCCcHHHHHhhceEEEEecCCCc-------------------cHHHHHHHHHHHHhhccCcceEEEEcCCc
Q 045172 61 VGYGFADELKRAWFWVRMVLVKPQ-------------------DADVLLRNYMVAMVDKRRFGCLVVVSDDS 113 (157)
Q Consensus 61 vgygla~eLrRAGv~V~~V~dkpq-------------------AAD~AL~~~~~~~~~~r~v~clvLVSDDs 113 (157)
.+++++..|.++|+.|-.+...|. ..+......+.+.+...++|.|+-.||+.
T Consensus 16 ~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~~e~~ 87 (389)
T PRK06849 16 AALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEEV 87 (389)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEECChHH
Confidence 357899999999999988855543 12233455666666677788888887765
No 243
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=69.08 E-value=20 Score=29.74 Aligned_cols=69 Identities=6% Similarity=0.033 Sum_probs=48.9
Q ss_pred hcCcccCCC------cHHHHHhhceEEEE-ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC
Q 045172 56 ILTPKVGYG------FADELKRAWFWVRM-VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL 127 (157)
Q Consensus 56 ~l~pkvgyg------la~eLrRAGv~V~~-V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l 127 (157)
++.+-..|| ....|++.|..|-. +.-.|.++|.. .++..+. .-+.|.|++...-.+...+++.++++|+
T Consensus 137 il~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~--~~v~~l~-~~~pd~v~~~~~~~~~~~~~~~~~~~G~ 212 (334)
T cd06356 137 TIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFG--STIQKIQ-AAKPDFVMSILVGANHLSFYRQWAAAGL 212 (334)
T ss_pred EECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHH--HHHHHHH-hcCCCEEEEeccCCcHHHHHHHHHHcCC
Confidence 444444454 24678888977643 34455567763 4444444 5789999999889999999999999999
No 244
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=68.66 E-value=19 Score=35.03 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=47.8
Q ss_pred HHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhhh
Q 045172 67 DELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRIA 144 (157)
Q Consensus 67 ~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~A 144 (157)
.+|+++|+.|.+++. .|.+|. ......|++-+.-=....|=..+++..++.|-.+..+||+ +|-.-=..|
T Consensus 456 ~~l~~~Gi~v~miTGD~~~ta~--------~iA~~lGI~~v~a~~~PedK~~~v~~lq~~g~~VamvGDG~NDapAL~~A 527 (675)
T TIGR01497 456 AQLRKMGIKTIMITGDNRLTAA--------AIAAEAGVDDFIAEATPEDKIALIRQEQAEGKLVAMTGDGTNDAPALAQA 527 (675)
T ss_pred HHHHHCCCEEEEEcCCCHHHHH--------HHHHHcCCCEEEcCCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhC
Confidence 346677777777754 333221 1122346643332233355566778888899899999999 765555788
Q ss_pred hcccch
Q 045172 145 NAFFSW 150 (157)
Q Consensus 145 D~~fsW 150 (157)
|+.+..
T Consensus 528 dvGiAm 533 (675)
T TIGR01497 528 DVGVAM 533 (675)
T ss_pred CEeEEe
Confidence 988765
No 245
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=68.46 E-value=20 Score=31.39 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=52.8
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchHH---HHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFVE---VFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~~---~lr~Arer~l~tVV-VGd~~~ 137 (157)
+..+|++-|. .|-.|.|+ .....-+..++.+.+...|+++.+. |..++.... .++.+++.+...|| ||.++.
T Consensus 20 l~~~l~~~g~~r~lvvt~~-~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSv 98 (379)
T TIGR02638 20 IVDEVKRRGFKKALVVTDK-DLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSP 98 (379)
T ss_pred HHHHHHhcCCCEEEEEcCc-chhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 5677788774 55566764 4444447788888887778887765 555566655 67778888888777 898855
Q ss_pred hHHHh
Q 045172 138 GALKR 142 (157)
Q Consensus 138 ~~L~r 142 (157)
.....
T Consensus 99 iD~aK 103 (379)
T TIGR02638 99 IDTAK 103 (379)
T ss_pred HHHHH
Confidence 44443
No 246
>PRK11263 cardiolipin synthase 2; Provisional
Probab=68.40 E-value=35 Score=30.87 Aligned_cols=69 Identities=7% Similarity=0.056 Sum_probs=49.8
Q ss_pred ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEc----CCcchHHHHHHHHHcCCeEEEEcCC-CchHHHh
Q 045172 73 WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVS----DDSDFVEVFQEATLRWLKMVVVGDM-SDGALKR 142 (157)
Q Consensus 73 Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS----DDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r 142 (157)
+..+..|++.|......+...+.+++. .-=.-|.+.| .+..+...|+.|.+|||++-+|-++ ++..+..
T Consensus 190 ~~~~~~v~~~p~~~~~~i~~~~~~~i~-~A~~~I~I~tpYf~p~~~l~~aL~~Aa~RGV~V~ii~~~~~d~~~~~ 263 (411)
T PRK11263 190 EAQALLVWRDNEEHRDDIERHYLKALR-QARREVIIANAYFFPGYRLLRALRNAARRGVRVRLILQGEPDMPIVR 263 (411)
T ss_pred CeEEEEEECCCcchHHHHHHHHHHHHH-HhceEEEEEecCcCCCHHHHHHHHHHHHCCCEEEEEeCCCCCcHHHH
Confidence 357889988887666677777777773 3334566665 4778899999999999999998655 3444433
No 247
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=68.03 E-value=24 Score=34.92 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=28.5
Q ss_pred chHHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccc
Q 045172 114 DFVEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFS 149 (157)
Q Consensus 114 DF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fs 149 (157)
|=..+++..++.|-.+..+||+ +|-.-=+.||+.++
T Consensus 656 ~K~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIA 692 (941)
T TIGR01517 656 DKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFS 692 (941)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchHHHHHhCCccee
Confidence 3345788889999999999999 66544478999885
No 248
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=67.84 E-value=9.9 Score=33.63 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=56.6
Q ss_pred EEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEE-cCC--CchHHHhhhhcccchhhh
Q 045172 77 RMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVV-GDM--SDGALKRIANAFFSWSDL 153 (157)
Q Consensus 77 ~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVV-Gd~--~~~~L~r~AD~~fsW~ev 153 (157)
-|.||....-=..-+.+++.+.++--+.+||..++.+.-+..+++-||..=..+.| |+. .+.-+...||+.++=+++
T Consensus 37 ~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aDi~~~~D~~ 116 (275)
T PF12683_consen 37 VTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHEDPEVISSAADIVVNPDEI 116 (275)
T ss_dssp EE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSSEEEE--HH
T ss_pred EeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccCeEeccchh
Confidence 34488877777788999999999999999999999999999999999965554444 443 568899999999987777
Q ss_pred hcC
Q 045172 154 LMG 156 (157)
Q Consensus 154 ~~G 156 (157)
.+|
T Consensus 117 ~~G 119 (275)
T PF12683_consen 117 SRG 119 (275)
T ss_dssp HHH
T ss_pred hcc
Confidence 666
No 249
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=67.77 E-value=22 Score=31.06 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=48.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEE------------------EEcCCcchHHHHHHH-H
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLV------------------VVSDDSDFVEVFQEA-T 123 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clv------------------LVSDDsDF~~~lr~A-r 123 (157)
-.+-..|++.|+.+-.+|..+.- ....+.+.+ |++.++ .|+.... .++++.+ .
T Consensus 187 ~elL~~Lk~~G~~~aIvSgg~~~----~~~~l~~~L---gld~~~an~lei~dg~ltg~v~g~iv~~k~K-~~~L~~la~ 258 (322)
T PRK11133 187 TELVLKLQALGWKVAIASGGFTY----FADYLRDKL---RLDAAVANELEIMDGKLTGNVLGDIVDAQYK-ADTLTRLAQ 258 (322)
T ss_pred HHHHHHHHHcCCEEEEEECCcch----hHHHHHHHc---CCCeEEEeEEEEECCEEEeEecCccCCcccH-HHHHHHHHH
Confidence 55668999999999999999861 122333222 333211 1112223 4455554 4
Q ss_pred HcCC---eEEEEcCC-CchHHHhhhhcccch
Q 045172 124 LRWL---KMVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 124 er~l---~tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
+-|+ .||.|||+ +|-...+.|++.+-|
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEEe
Confidence 5565 69999999 666666777776655
No 250
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=67.57 E-value=8.7 Score=35.44 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=36.8
Q ss_pred cCcceEEEEcCCc-----chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDS-----DFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDs-----DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...+||+++..|. -+...+..|+++|.+.|||.-. .......||.|++
T Consensus 158 ~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr-~s~ta~~Ad~~l~ 210 (567)
T cd02765 158 VNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPV-YSTTAAKADQWVP 210 (567)
T ss_pred hcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCC-CCcchhhcCEEec
Confidence 3679999998884 2446667899999999999554 3466778999884
No 251
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=67.35 E-value=26 Score=29.65 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=48.2
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcce--EEEEcCCcchH---HHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGC--LVVVSDDSDFV---EVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~c--lvLVSDDsDF~---~~lr~Arer~l~tVV-VGd~~~ 137 (157)
|..++++.|. .+-.|.| +...+ .+...+.+.+... +++ +..+..++++. .++..+++.+...|| ||.++.
T Consensus 14 l~~~~~~~g~~~~liv~~-~~~~~-~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 90 (332)
T cd07766 14 IGEEIKRGGFDRALVVSD-EGVVK-GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGST 90 (332)
T ss_pred HHHHHHhcCCCeEEEEeC-Cchhh-hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchH
Confidence 4556676664 3556666 44455 6777788888554 544 44455556665 566677777777776 999865
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
......
T Consensus 91 ~D~aK~ 96 (332)
T cd07766 91 LDTAKA 96 (332)
T ss_pred HHHHHH
Confidence 555544
No 252
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=67.33 E-value=22 Score=26.38 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=37.5
Q ss_pred ccCCCcHHHHHhhceEEEEecCCCc----------------cHHH--------HHHHHHHHHhhccCcceEEEEcCCcch
Q 045172 60 KVGYGFADELKRAWFWVRMVLVKPQ----------------DADV--------LLRNYMVAMVDKRRFGCLVVVSDDSDF 115 (157)
Q Consensus 60 kvgygla~eLrRAGv~V~~V~dkpq----------------AAD~--------AL~~~~~~~~~~r~v~clvLVSDDsDF 115 (157)
+.||-+...|++.|+-|-.|..+.+ ..|. .+-..+-++. ..|+..+++.+. ..-
T Consensus 14 ~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~-~~g~~~v~~~~g-~~~ 91 (116)
T PF13380_consen 14 KFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAA-ALGVKAVWLQPG-AES 91 (116)
T ss_dssp SHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHH-HHT-SEEEE-TT-S--
T ss_pred ChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHH-HcCCCEEEEEcc-hHH
Confidence 3456667778888877777754433 2221 1222333333 567777777777 666
Q ss_pred HHHHHHHHHcCCeEEEEcCC
Q 045172 116 VEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 116 ~~~lr~Arer~l~tVVVGd~ 135 (157)
.++++.|++.|++ ++|..
T Consensus 92 ~~~~~~a~~~gi~--vigp~ 109 (116)
T PF13380_consen 92 EELIEAAREAGIR--VIGPN 109 (116)
T ss_dssp HHHHHHHHHTT-E--EEESS
T ss_pred HHHHHHHHHcCCE--EEeCC
Confidence 6777777776666 45554
No 253
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=67.13 E-value=11 Score=30.46 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=25.9
Q ss_pred ceEEEEcCC------cchHHHHHHHHHcCCeEEEEcCCC
Q 045172 104 GCLVVVSDD------SDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 104 ~clvLVSDD------sDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
..+||++|| .+...+.+.+++.|+++.+||-++
T Consensus 133 kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~ 171 (193)
T cd01477 133 KVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQ 171 (193)
T ss_pred eEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 448899974 267888999999999977776663
No 254
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=67.13 E-value=11 Score=33.46 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=36.0
Q ss_pred CcceEEEEcCCc------chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 102 RFGCLVVVSDDS------DFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 102 ~v~clvLVSDDs------DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
..++|+++..|. -+..-++.|+++|.+.|||+-. .......||.|++
T Consensus 156 ~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr-~t~ta~~AD~~i~ 208 (454)
T cd02755 156 NARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPR-FSELASKADEWIP 208 (454)
T ss_pred cCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCEecC
Confidence 459999997762 1455667889999999999876 3466788999874
No 255
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=66.58 E-value=27 Score=27.12 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=50.6
Q ss_pred HHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcc-eE--EEEcCC----------c
Q 045172 48 KNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFG-CL--VVVSDD----------S 113 (157)
Q Consensus 48 kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~-cl--vLVSDD----------s 113 (157)
.++..... +.|.-| -.+-.+|+..|+.+-.||..+. .....+.+. .|++ ++ ++.+|+ .
T Consensus 76 ~~~~~~~~-~~~~~g~~~~l~~l~~~g~~~~IvS~~~~----~~~~~~l~~---~~i~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
T TIGR00338 76 LLKEVREN-LPLTEGAEELVKTLKEKGYKVAVISGGFD----LFAEHVKDK---LGLDAAFANRLEVEDGKLTGLVEGPI 147 (219)
T ss_pred HHHHHHhc-CCcCCCHHHHHHHHHHCCCEEEEECCCcH----HHHHHHHHH---cCCCceEeeEEEEECCEEEEEecCcc
Confidence 34444333 344444 4466788889999999998774 122222222 2331 11 111111 0
Q ss_pred c----hHHHHHHH-HHcCC---eEEEEcCC-CchHHHhhhhcccch
Q 045172 114 D----FVEVFQEA-TLRWL---KMVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 114 D----F~~~lr~A-rer~l---~tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
- =..+++.+ ++-|+ .++.|||+ +|-...+.|+..+.|
T Consensus 148 ~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~ 193 (219)
T TIGR00338 148 VDASYKGKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAF 193 (219)
T ss_pred cCCcccHHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEe
Confidence 0 13344444 33455 58999998 666666777766644
No 256
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=66.28 E-value=16 Score=31.64 Aligned_cols=68 Identities=18% Similarity=0.087 Sum_probs=48.0
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHh-----------------------------hccCcceEEEE------
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMV-----------------------------DKRRFGCLVVV------ 109 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~-----------------------------~~r~v~clvLV------ 109 (157)
||..|..-|..|..|.|.+. ..+.+.+.+.+ ...+++.||-+
T Consensus 68 La~aL~~lG~~~~ivtd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lIaIERpGra 144 (291)
T PF14336_consen 68 LARALQALGKEVVIVTDERC---APVVKAAVRAAGLQGVDKVEIPPFFPDDFAQAFLEADGLLKEPRPDLLIAIERPGRA 144 (291)
T ss_pred HHHHHHHcCCeEEEEECHHH---HHHHHHHHHHHhhCcccccccccccccchhhhHHHHhhccccCCCCEEEEeCCcccC
Confidence 67789999999999999987 22222222222 23344444433
Q ss_pred -------------c-CCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 110 -------------S-DDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 110 -------------S-DDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
| --..|-+++..|++.|+.|+.|||+
T Consensus 145 ~dG~Y~nmrG~~I~~~~a~~D~lf~~a~~~gi~tigIGDG 184 (291)
T PF14336_consen 145 ADGNYYNMRGEDISHLVAPLDDLFLAAKEPGIPTIGIGDG 184 (291)
T ss_pred CCCCEecCcCCcCccccccHHHHHHHhhcCCCCEEEECCC
Confidence 1 2457899999999999999999999
No 257
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=65.81 E-value=9.9 Score=31.97 Aligned_cols=80 Identities=16% Similarity=0.075 Sum_probs=53.5
Q ss_pred HhhcCcccC----CC----cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCc-ceEEEEcCCc---chHHHHHH
Q 045172 54 SAILTPKVG----YG----FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRF-GCLVVVSDDS---DFVEVFQE 121 (157)
Q Consensus 54 r~~l~pkvg----yg----la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v-~clvLVSDDs---DF~~~lr~ 121 (157)
.++...+.| || |..+|+++|+.|+.||.-..+ ..|.-.--..+. .+|. .++.++|+.- .+.+....
T Consensus 76 ~~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~-~aaaa~~g~~lt-~~g~~~~v~~~s~~~~~~~~~~~~~~ 153 (257)
T TIGR00522 76 KDVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASIS-SAVCGLTGLQLY-KFGKTATIVFFTDNYRPQTPYNVIKE 153 (257)
T ss_pred CCEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHH-HHHHHHcCCCcc-cCCCcEEEEEecCCcCCCCHHHHHHH
Confidence 356666666 74 466779999999999876653 222222222222 4565 8899998764 45567777
Q ss_pred HHHcCCeEEEEcCC
Q 045172 122 ATLRWLKMVVVGDM 135 (157)
Q Consensus 122 Arer~l~tVVVGd~ 135 (157)
...++.+|+|+=|.
T Consensus 154 ~l~~~~~Tlvll~~ 167 (257)
T TIGR00522 154 NRKIGLHTLVLLDI 167 (257)
T ss_pred HHhcCCCcEEEEec
Confidence 88899999999654
No 258
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=65.72 E-value=9.3 Score=37.58 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=36.1
Q ss_pred cCcceEEEEcCCcc-----hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSD-----FVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsD-----F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...+||+++..|.- ....+++|+++|.+.|||.-. .......||.|++
T Consensus 223 ~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr-~t~tA~~AD~wlp 275 (912)
T TIGR03479 223 FNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPD-YNPSTIHADLWLP 275 (912)
T ss_pred hcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCC-CChhhhhCCeecC
Confidence 46899999977642 345667899999999999544 3456678999985
No 259
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=65.70 E-value=37 Score=29.49 Aligned_cols=75 Identities=15% Similarity=-0.015 Sum_probs=47.9
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~ 137 (157)
|+.+|++-|. .+-.|.|+-.. ....+.+.+...+++..+. |..++.+. .+++.+++.+...|| ||.++.
T Consensus 14 l~~~~~~~g~~~~livtd~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 14 LPSLLKGLGGKRVLLVTGPRSA----IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred HHHHHHhcCCCeEEEEeCchHH----HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 4556666664 46667776543 4455666776667766655 55565555 567778888888877 898865
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
......
T Consensus 90 ~D~aK~ 95 (367)
T cd08182 90 LDTAKA 95 (367)
T ss_pred HHHHHH
Confidence 444444
No 260
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=65.68 E-value=21 Score=35.40 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=27.6
Q ss_pred chHHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccc
Q 045172 114 DFVEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFS 149 (157)
Q Consensus 114 DF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fs 149 (157)
|=..+++..+++|-.+..+||+ +|-.-=+.||+.++
T Consensus 625 ~K~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIA 661 (903)
T PRK15122 625 QKSRVLKALQANGHTVGFLGDGINDAPALRDADVGIS 661 (903)
T ss_pred HHHHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEE
Confidence 3345677788999999999999 66544567898875
No 261
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=65.57 E-value=18 Score=28.30 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=41.0
Q ss_pred CCcHHHHHhhceE----EEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFW----VRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~----V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++..+|+. |.++ .+... |..-...+.+.+.+.+++.+++++++++.. +. +...+...|.+|..
T Consensus 18 ~gi~~~~~~~g~~~g~~v~l~~~~~~~--~~~~~~~~~~~l~~~~vd~iI~~~~~~~~~--~~-~~~~~iPvV~~~~~ 90 (281)
T cd06325 18 KGFKDGLKEAGYKEGKNVKIDYQNAQG--DQSNLPTIARKFVADKPDLIVAIATPAAQA--AA-NATKDIPIVFTAVT 90 (281)
T ss_pred HHHHHHHHHhCccCCceEEEEEecCCC--CHHHHHHHHHHHHhcCCCEEEEcCcHHHHH--HH-HcCCCCCEEEEecC
Confidence 5788999999973 3332 22221 233333444444467999999987654322 22 55678888888743
No 262
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=65.56 E-value=25 Score=27.52 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=59.4
Q ss_pred CcHHHHHhh-ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC-------CcchHHHHHHHHHcCCeEEEEcCC
Q 045172 64 GFADELKRA-WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD-------DSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRA-Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD-------DsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
|-+..|+.. |+.|..|...|...+ .++.+++-+..++-+|-.+| ..|.-.+.|.|-+.|+-.+.=-+.
T Consensus 40 gTa~~L~~~~Gi~v~~vi~~~~gg~----~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~t 115 (142)
T PRK05234 40 TTGGLIQEATGLDVTRLLSGPLGGD----QQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRAT 115 (142)
T ss_pred hHHHHHHhccCCeeEEEEcCCCCCc----hhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHH
Confidence 568999999 999999843333222 34667776778888777664 225668889999999877765555
Q ss_pred CchHHHhhhhcccchhhhhc
Q 045172 136 SDGALKRIANAFFSWSDLLM 155 (157)
Q Consensus 136 ~~~~L~r~AD~~fsW~ev~~ 155 (157)
. .++-..-+.-.+|.|...
T Consensus 116 A-~a~~~al~~~~~~~~~~~ 134 (142)
T PRK05234 116 A-DFLISSLLFDDEVEILIP 134 (142)
T ss_pred H-HHHHHHHhcccchhhccc
Confidence 3 455555444568877654
No 263
>PRK13055 putative lipid kinase; Reviewed
Probab=65.48 E-value=25 Score=30.26 Aligned_cols=53 Identities=8% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHhhccCcceEEEEcC--CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhh
Q 045172 92 NYMVAMVDKRRFGCLVVVSD--DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIAN 145 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSD--DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD 145 (157)
.++...+...|++.-++.+- .-+-..+++.+.+.+..+|||..+ |+.+...++
T Consensus 23 ~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GG-DGTl~evvn 77 (334)
T PRK13055 23 ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGG-DGTINEVVN 77 (334)
T ss_pred HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECC-CCHHHHHHH
Confidence 34444444445544444332 124444555554444444444444 344444443
No 264
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=65.43 E-value=15 Score=35.54 Aligned_cols=76 Identities=17% Similarity=0.080 Sum_probs=45.7
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhhhh
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRIAN 145 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD 145 (157)
.+|++.|+.+.+++..++.+-.++. ...|++...=++ ..|=..+++..++.+ .++.|||+ +|-.--+.||
T Consensus 578 ~~L~~~gi~~~llTGd~~~~a~~ia-------~~lgi~~~~~~~-p~~K~~~v~~l~~~~-~v~mvGDgiNDapAl~~A~ 648 (741)
T PRK11033 578 SELKALGIKGVMLTGDNPRAAAAIA-------GELGIDFRAGLL-PEDKVKAVTELNQHA-PLAMVGDGINDAPAMKAAS 648 (741)
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHH-------HHcCCCeecCCC-HHHHHHHHHHHhcCC-CEEEEECCHHhHHHHHhCC
Confidence 3567778887777776663333322 233444211111 123445666666544 78999999 7766667899
Q ss_pred cccchh
Q 045172 146 AFFSWS 151 (157)
Q Consensus 146 ~~fsW~ 151 (157)
+.++|.
T Consensus 649 vgia~g 654 (741)
T PRK11033 649 IGIAMG 654 (741)
T ss_pred eeEEec
Confidence 998875
No 265
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=65.39 E-value=25 Score=34.94 Aligned_cols=35 Identities=17% Similarity=0.025 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccch
Q 045172 116 VEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 116 ~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
..+++..+++|-.+..+||+ +|-.-=+.||+.++=
T Consensus 627 ~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAm 662 (902)
T PRK10517 627 ERIVTLLKREGHVVGFMGDGINDAPALRAADIGISV 662 (902)
T ss_pred HHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEe
Confidence 45677778899999999999 765555678988863
No 266
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=65.29 E-value=26 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=21.3
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecCCCc
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~dkpq 84 (157)
+.|-.| ..+-..|++.|+.+-.++.+|.
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~ 109 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMR 109 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCH
Confidence 344444 5677788899999999999886
No 267
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.26 E-value=9.4 Score=34.73 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=36.2
Q ss_pred cCcceEEEEcCCcchH-----------HHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSDFV-----------EVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsDF~-----------~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...++|+++-.|.--+ ..++.|+++|.+.|||.=. .......||.|++
T Consensus 155 ~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr-~t~ta~~AD~~l~ 213 (539)
T cd02762 155 DRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPR-RTETAKLADEHLF 213 (539)
T ss_pred hhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCC-CchhhHhcCEeeC
Confidence 3469999998775433 4677899999999999554 3466778999985
No 268
>PRK13054 lipid kinase; Reviewed
Probab=64.93 E-value=32 Score=28.92 Aligned_cols=51 Identities=8% Similarity=-0.072 Sum_probs=27.3
Q ss_pred cCcceEEEEcCCcchHHHHHHHHHc--C--CeEEEEcCCCchHHHhhhhcccchh
Q 045172 101 RRFGCLVVVSDDSDFVEVFQEATLR--W--LKMVVVGDMSDGALKRIANAFFSWS 151 (157)
Q Consensus 101 r~v~clvLVSDDsDF~~~lr~Arer--~--l~tVVVGd~~~~~L~r~AD~~fsW~ 151 (157)
.+.|+||.+.-|=-+.+++.-.... + ...-+|=-+|.-.|.|.-.+--+|.
T Consensus 55 ~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~ 109 (300)
T PRK13054 55 LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPD 109 (300)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHH
Confidence 4567777777777777777665533 1 2333443333345555544444443
No 269
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=64.72 E-value=18 Score=30.96 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHhhceE-EEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 67 DELKRAWFW-VRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 67 ~eLrRAGv~-V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
..|+..|.. |....-.|...| +...+.++. .-+.|.|++.+.-.+.+.++|.++++|++..+++..
T Consensus 170 ~~l~~~G~~~~~~~~~~~~~~~--~~~~v~~i~-~~~~d~v~~~~~~~~~~~~~r~~~~~G~~~~~~~~~ 236 (366)
T COG0683 170 AALKALGGEVVVEEVYAPGDTD--FSALVAKIK-AAGPDAVLVGGYGPDAALFLRQAREQGLKAKLIGGD 236 (366)
T ss_pred HHHHhCCCeEEEEEeeCCCCCC--hHHHHHHHH-hcCCCEEEECCCCccchHHHHHHHHcCCCCcccccc
Confidence 456778986 222344455555 666777777 689999999999999999999999999999777665
No 270
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=64.69 E-value=12 Score=32.12 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=30.1
Q ss_pred ceEEEEcCCc---chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhc
Q 045172 104 GCLVVVSDDS---DFVEVFQEATLRWLKMVVVGDMSDGALKRIANA 146 (157)
Q Consensus 104 ~clvLVSDDs---DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~ 146 (157)
++++.+|..- +-...++.|+++|.++|+|.+. +.|.+.||.
T Consensus 80 dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~--~~L~~~a~~ 123 (337)
T PRK08674 80 TLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSG--GKLKEMAKE 123 (337)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCC--chHHHHHHh
Confidence 5666666442 3456688899999999999875 358888886
No 271
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=64.66 E-value=15 Score=29.09 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHhhcc----CcceEEEEcCCc-----chHHHHHHHHHcCCeEEEEcCCCc-hHHHhhhh
Q 045172 85 DADVLLRNYMVAMVDKR----RFGCLVVVSDDS-----DFVEVFQEATLRWLKMVVVGDMSD-GALKRIAN 145 (157)
Q Consensus 85 AAD~AL~~~~~~~~~~r----~v~clvLVSDDs-----DF~~~lr~Arer~l~tVVVGd~~~-~~L~r~AD 145 (157)
+-+-||. .+.+.+.+. +-..|+|+||.+ ++..+.+.+++.|++..+||=+++ ..|+..|.
T Consensus 87 ~l~~aL~-~A~~~l~~~~~~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~ 156 (183)
T cd01453 87 SLQNGLE-MALESLKHMPSHGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEMHICKEICK 156 (183)
T ss_pred hHHHHHH-HHHHHHhcCCccCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHHHHHHHHHH
Confidence 4555554 344444221 123577777633 456789999999999888876632 44666654
No 272
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=64.48 E-value=21 Score=34.62 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccch
Q 045172 113 SDFVEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 113 sDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
.|=..+++..++.|-.+..+||+ +|---=..||+.+.-
T Consensus 490 edK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGIAM 528 (673)
T PRK14010 490 EDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAM 528 (673)
T ss_pred HHHHHHHHHHHhCCCEEEEECCChhhHHHHHhCCEEEEe
Confidence 34456788888899889999999 653333567887743
No 273
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=64.41 E-value=19 Score=31.33 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=47.8
Q ss_pred cHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH------------cCCeE
Q 045172 65 FADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL------------RWLKM 129 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are------------r~l~t 129 (157)
|+.+|+.+|..|..++- .|.+. ..-...+.+.+.+.++||+++-|... ...+++.+.+ .+++.
T Consensus 162 L~~~L~~~G~~V~~~~vY~~~~~~~-~~~~~~~~~~l~~~~~d~v~FtS~st-v~~f~~~l~~~~~~~~~~~~~~~~~~i 239 (381)
T PRK07239 162 FLEALRAAGAEVVPVPVYRWVPPPD-PGPLDRLVDAIASRGLDAVTFTSAPA-VAALLERAREMGLLDQLLAALRTDVLA 239 (381)
T ss_pred HHHHHHHCCCEEEEeCcEEEcCCCC-hhHHHHHHHHHHcCCccEEEEcCHHH-HHHHHHHHHHcCChHHHHHhhccCCEE
Confidence 89999999998888742 22211 11123344555556799999988554 3333433332 45677
Q ss_pred EEEcCCCchHHHh
Q 045172 130 VVVGDMSDGALKR 142 (157)
Q Consensus 130 VVVGd~~~~~L~r 142 (157)
+.||..+..+|..
T Consensus 240 ~aIGp~Ta~al~~ 252 (381)
T PRK07239 240 ACVGPVTAAPLVR 252 (381)
T ss_pred EEECHHHHHHHHH
Confidence 8899987666664
No 274
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=64.39 E-value=10 Score=27.94 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.0
Q ss_pred EEEEcCCcchHHHHHHHHHcCCeEEEE
Q 045172 106 LVVVSDDSDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 106 lvLVSDDsDF~~~lr~Arer~l~tVVV 132 (157)
.||.+.|+|..+-+..||..|.++|-+
T Consensus 55 ~VllT~D~DL~e~v~iar~~g~~~v~L 81 (86)
T cd06409 55 IVLITSDSDLVAAVLVARSAGLKKLDL 81 (86)
T ss_pred EEEEeccchHHHHHHHHHHcCCCEEEE
Confidence 477788899999999999999999865
No 275
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=64.23 E-value=38 Score=27.60 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=43.2
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC-cchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD-SDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD-sDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.|+..++...|+.+-......+ ..-.....+.+..+++|++++.+.+ .+- +.+. +.+..+|++|..
T Consensus 79 ~~i~~~~~~~gy~~~i~~~~~~---~~~~~~~~~~l~~~~vdGvIi~~~~~~~~-~~l~---~~~~p~V~i~~~ 145 (311)
T TIGR02405 79 SGMLPVFYTAGYDPIIMESQFS---PQLTNEHLSVLQKRNVDGVILFGFTGCDE-EILE---SWNHKAVVIARD 145 (311)
T ss_pred HHHHHHHHHCCCeEEEecCCCC---hHHHHHHHHHHHhcCCCEEEEeCCCCCCH-HHHH---hcCCCEEEEecC
Confidence 5788999999999887654332 2222344455557899999998743 332 2333 346688999853
No 276
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=64.22 E-value=41 Score=30.75 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=49.5
Q ss_pred ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEc----CCcchHHHHHHHHHcCCeEEEEcCC-CchHH
Q 045172 73 WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVS----DDSDFVEVFQEATLRWLKMVVVGDM-SDGAL 140 (157)
Q Consensus 73 Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS----DDsDF~~~lr~Arer~l~tVVVGd~-~~~~L 140 (157)
+..|+.+++.|...+..+..-+++++. .-=.-|.+.| .|.++...|+.|.+||+++-+|=+. ++..+
T Consensus 302 ~~~~qi~~sgP~~~~~~~~~~~~~~I~-~A~~~I~I~tpYfip~~~i~~aL~~Aa~rGV~Vril~p~~~d~~~ 373 (483)
T PRK01642 302 GHTVQVIASGPGDPEETIHQFLLTAIY-SARERLWITTPYFVPDEDLLAALKTAALRGVDVRIIIPSKNDSLL 373 (483)
T ss_pred CceEEEEeCCCCChhhHHHHHHHHHHH-HhccEEEEEcCCcCCCHHHHHHHHHHHHcCCEEEEEeCCCCCcHH
Confidence 568999999999887777777777774 2224566665 5778999999999999998776444 44433
No 277
>COG4634 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.17 E-value=10 Score=29.64 Aligned_cols=49 Identities=24% Similarity=0.169 Sum_probs=32.6
Q ss_pred cHHHHHhhceEEEEecCCC--ccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHH
Q 045172 65 FADELKRAWFWVRMVLVKP--QDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQ 120 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkp--qAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr 120 (157)
||+-|--+|+.---+++-+ +|.|.-. ++.. +.+-.|+||-||||+++..
T Consensus 13 lad~l~~~g~e~~h~r~lg~~da~D~EI----~a~A---~~~~~iivTkDsDF~~la~ 63 (113)
T COG4634 13 LADWLPMAGIEAVHWRDLGLRDATDIEI----WAYA---RRNNRIIVTKDSDFADLAL 63 (113)
T ss_pred HHHHhhhcccceeeecccCcCCCccHHH----HHHH---HhcCcEEEEcCccHHHHHH
Confidence 5777778885544455555 3667643 4333 4567899999999977643
No 278
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=64.05 E-value=70 Score=29.12 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=25.9
Q ss_pred hhHHHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCc
Q 045172 45 KMEKNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 45 k~~kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpq 84 (157)
+.+.|.+.......|.-| ..+-..|+..|+.+-.++.+|.
T Consensus 203 ~~~~y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~ 243 (381)
T PLN02575 203 KEEIYQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPR 243 (381)
T ss_pred HHHHHHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCH
Confidence 344555554444455545 5566778888888888888875
No 279
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=63.85 E-value=37 Score=24.13 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEE
Q 045172 85 DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 85 AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVV 132 (157)
.++-..-.++.+-+ ...-+.+++|.|.. .=+.-|++.|+.||.|
T Consensus 133 Kp~~~~~~~~~~~~-~~~p~~~~~vgD~~---~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 133 KPDPDAYRRALEKL-GIPPEEILFVGDSP---SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp TTSHHHHHHHHHHH-TSSGGGEEEEESSH---HHHHHHHHTTSEEEEE
T ss_pred hhHHHHHHHHHHHc-CCCcceEEEEeCCH---HHHHHHHHcCCeEEeC
Confidence 44466677777766 45556666676665 5567778888888765
No 280
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=63.53 E-value=20 Score=25.56 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=32.0
Q ss_pred ceEEEEcCCc-----chHHHHHHHHHcCCeEEEEcCC--CchHHHhhhhc
Q 045172 104 GCLVVVSDDS-----DFVEVFQEATLRWLKMVVVGDM--SDGALKRIANA 146 (157)
Q Consensus 104 ~clvLVSDDs-----DF~~~lr~Arer~l~tVVVGd~--~~~~L~r~AD~ 146 (157)
..++|+||-. +...+++.+++.|++.++||-+ ....|...|+.
T Consensus 105 ~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~~ 154 (161)
T cd01450 105 KVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGPADEEELREIASC 154 (161)
T ss_pred eEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccccCHHHHHHHhCC
Confidence 4689998832 2889999999999997777765 44566666654
No 281
>PRK13337 putative lipid kinase; Reviewed
Probab=63.26 E-value=32 Score=28.96 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=27.1
Q ss_pred cCcceEEEEcCCcchHHHHHHHHHcC--CeEEEEcCCCchHHHhhhhcccchhh
Q 045172 101 RRFGCLVVVSDDSDFVEVFQEATLRW--LKMVVVGDMSDGALKRIANAFFSWSD 152 (157)
Q Consensus 101 r~v~clvLVSDDsDF~~~lr~Arer~--l~tVVVGd~~~~~L~r~AD~~fsW~e 152 (157)
.+.|+||.+.-|=-..+++.-....+ ...-||=-+|.-.|.|.-.+-.+|++
T Consensus 56 ~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~ 109 (304)
T PRK13337 56 RKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEK 109 (304)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHH
Confidence 45667777777776666666544332 22334433333455555554444443
No 282
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=63.18 E-value=12 Score=34.59 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=37.3
Q ss_pred ceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 104 GCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 104 ~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
++++.||- ..+-..+++.|+++|.+||.|-+..+..|.+.||..|.
T Consensus 338 dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~ 386 (604)
T PRK00331 338 TLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLY 386 (604)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEE
Confidence 56666654 34666788999999999999999877899999997664
No 283
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=63.18 E-value=21 Score=30.22 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=38.9
Q ss_pred HHHHhhce----EEEE-ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 67 DELKRAWF----WVRM-VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 67 ~eLrRAGv----~V~~-V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
..|+..|+ -|.. +.-.|.+.|.. ..+..+. ..+.+.+++.+...+...+++.|++.|+.
T Consensus 176 ~~~~~~g~~~~~~v~~~~~~~~~~~d~~--~~l~~ik-~~~~~vIvl~~~~~~~~~l~~qa~~~g~~ 239 (377)
T cd06379 176 TLLEEREIEFKIKVEKVVEFEPGEKNVT--SLLQEAK-ELTSRVILLSASEDDAAVIYRNAGMLNMT 239 (377)
T ss_pred HHHHhcCCccceeeeEEEecCCchhhHH--HHHHHHh-hcCCeEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 46667787 4332 22233444432 3333333 56889999999999999999999999885
No 284
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=63.06 E-value=31 Score=33.39 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=27.0
Q ss_pred HHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccch
Q 045172 117 EVFQEATLRWLKMVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 117 ~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
.+++..+++|-.+..+||+ +|-.-=+.||+.++-
T Consensus 525 ~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm 559 (755)
T TIGR01647 525 EIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAV 559 (755)
T ss_pred HHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEe
Confidence 3566788999999999999 775555678998864
No 285
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=62.90 E-value=8.5 Score=29.62 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=0.0
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc--chHHHHHH---HHHcCCeEEEEcCCCchH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS--DFVEVFQE---ATLRWLKMVVVGDMSDGA 139 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs--DF~~~lr~---Arer~l~tVVVGd~~~~~ 139 (157)
|+..|+.+|+.|..++---....... ....+.+....+++|++.|-.+ -|...+.. ....+.+.++||+.+...
T Consensus 137 l~~~L~~~g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~aig~~t~~~ 215 (239)
T cd06578 137 LAEALRERGAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRALLKNVKIAAIGPRTAEA 215 (239)
T ss_pred HHHHHHHCCCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEECHHHHHH
Q ss_pred HHh
Q 045172 140 LKR 142 (157)
Q Consensus 140 L~r 142 (157)
|..
T Consensus 216 l~~ 218 (239)
T cd06578 216 LRE 218 (239)
T ss_pred HHH
No 286
>PRK13059 putative lipid kinase; Reviewed
Probab=62.88 E-value=33 Score=28.91 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=15.9
Q ss_pred cCcceEEEEcCCcchHHHHHHHHHc
Q 045172 101 RRFGCLVVVSDDSDFVEVFQEATLR 125 (157)
Q Consensus 101 r~v~clvLVSDDsDF~~~lr~Arer 125 (157)
.+.++||.+.-|--..+++.-+-+.
T Consensus 55 ~~~d~vi~~GGDGTv~evv~gl~~~ 79 (295)
T PRK13059 55 ESYKYILIAGGDGTVDNVVNAMKKL 79 (295)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhc
Confidence 4566666677776666666655543
No 287
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=62.88 E-value=18 Score=29.48 Aligned_cols=71 Identities=20% Similarity=0.085 Sum_probs=43.7
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHH----------HHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCeEEE
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNY----------MVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLKMVV 131 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~----------~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~tVV 131 (157)
+.-+.-|-.+|-.|..|+..+...=..|... -.+.+ .+.+-++.-+||+ --..+...|+++|.-+-+
T Consensus 22 ~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl--~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 22 LRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADIL--EGAFLVIAATDDEELNRRVAHAARARGVPVNV 99 (205)
T ss_pred HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHh--CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4445667778888888876665221222111 00112 2445555666776 567899999999998888
Q ss_pred EcCC
Q 045172 132 VGDM 135 (157)
Q Consensus 132 VGd~ 135 (157)
++|.
T Consensus 100 ~d~~ 103 (205)
T TIGR01470 100 VDDP 103 (205)
T ss_pred CCCc
Confidence 8886
No 288
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=62.09 E-value=29 Score=26.72 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHhhccCcceEEEEcCCcc----hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcc
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSD----FVEVFQEATLRWLKMVVVGDMSDGALKRIANAF 147 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsD----F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~ 147 (157)
++.+..+ .+|--.||+++.|.+ ...+-.++.+.|+..|.|++. ..|++++.+-
T Consensus 33 ~e~~Kai-~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk--~~LG~a~g~~ 89 (116)
T COG1358 33 NEVTKAI-ERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSK--KELGKAVGKE 89 (116)
T ss_pred HHHHHHH-HcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCH--HHHHHHhCCC
Confidence 4566667 688999999999999 555566677899999999987 5899988765
No 289
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=61.67 E-value=43 Score=28.71 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=51.2
Q ss_pred CcccCC--CcHHHHHhhc-eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeE
Q 045172 58 TPKVGY--GFADELKRAW-FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKM 129 (157)
Q Consensus 58 ~pkvgy--gla~eLrRAG-v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~t 129 (157)
+|++-| |...+|...+ =.+-.|.| |...+.-+..++.+.+... +++.+. |..++.+. .+++.+++.+...
T Consensus 4 p~~i~~G~g~~~~l~~~~~~~~lvv~~-~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~ 81 (332)
T cd08180 4 KTKIYFGEDALERLKELKNKRVLIVTD-PFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDI 81 (332)
T ss_pred CCeEEECcCHHHHHHHhCCCeEEEEeC-chhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCE
Confidence 444443 3455554432 24444555 4444544677788888544 665544 45566777 7788888989988
Q ss_pred EE-EcCCCchHHHhh
Q 045172 130 VV-VGDMSDGALKRI 143 (157)
Q Consensus 130 VV-VGd~~~~~L~r~ 143 (157)
|| ||.++.......
T Consensus 82 IiaiGGGs~~D~aKa 96 (332)
T cd08180 82 VIALGGGSAIDAAKA 96 (332)
T ss_pred EEEECCchHHHHHHH
Confidence 87 898865555543
No 290
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.65 E-value=69 Score=24.60 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=41.8
Q ss_pred cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCeEEEEcC
Q 045172 80 LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 80 ~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~tVVVGd 134 (157)
|+-.+..-..+...+.+.+...|..|++..+++. +....++.+...++.-+++-.
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~ 62 (266)
T cd06278 7 ADLDNPFYSELLEALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTS 62 (266)
T ss_pred CCCCCchHHHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEec
Confidence 4444555566777788888889999988877654 677888899999998888754
No 291
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=61.51 E-value=17 Score=24.87 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=23.8
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD 111 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD 111 (157)
++..|+.+|+.|..=. .+ ..+.+++.++- ..|++++++|.+
T Consensus 21 l~~~L~~~gi~v~~d~-~~----~~~~k~~~~a~-~~g~p~~iiiG~ 61 (94)
T PF03129_consen 21 LANKLRKAGIRVELDD-SD----KSLGKQIKYAD-KLGIPFIIIIGE 61 (94)
T ss_dssp HHHHHHHTTSEEEEES-SS----STHHHHHHHHH-HTTESEEEEEEH
T ss_pred HHHHHHHCCCEEEEEC-CC----CchhHHHHHHh-hcCCeEEEEECc
Confidence 4667777776665522 11 23455665555 567777777664
No 292
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=61.29 E-value=31 Score=23.92 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=30.9
Q ss_pred HHHHHHhhccCcceEEEEc-CCcchHHHHHHHHHcCCeEEEEcCCCc
Q 045172 92 NYMVAMVDKRRFGCLVVVS-DDSDFVEVFQEATLRWLKMVVVGDMSD 137 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVS-DDsDF~~~lr~Arer~l~tVVVGd~~~ 137 (157)
+.+.+.+...|+++-+++. +.+-...+++.|.+.+...||+|....
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~ 105 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGS 105 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCC
Confidence 3333444345665554442 234667899999999999999999843
No 293
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=61.29 E-value=24 Score=24.55 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=32.9
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD 111 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD 111 (157)
|-|..|+..|+.|+++..|+.... .++.+++-+..++.+|-.++
T Consensus 21 gTa~~L~~~Gi~~~~~~~ki~~~~----~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 21 GTAKFLREAGLPVKTLHPKVHGGI----LAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHHHCCCcceeccCCCCCCC----HHHHHHhcCCCeEEEEECCC
Confidence 448899999999987777765321 24777777888898888765
No 294
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=61.09 E-value=17 Score=33.67 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=36.4
Q ss_pred CcceEEEEcCCc-----chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 102 RFGCLVVVSDDS-----DFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 102 ~v~clvLVSDDs-----DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
..++++++..|. .....++.|+++|.+.|+|.-. ...+...||.|++
T Consensus 155 ~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~-~s~ta~~ad~~i~ 206 (671)
T TIGR01591 155 NADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPR-KTETAKIADLHIP 206 (671)
T ss_pred hCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCcccC
Confidence 468999997764 3556778899999999999654 3566778998885
No 295
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=61.02 E-value=42 Score=28.11 Aligned_cols=52 Identities=23% Similarity=0.251 Sum_probs=22.4
Q ss_pred HHHHHhhccCcceEEEEc-CCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhh
Q 045172 93 YMVAMVDKRRFGCLVVVS-DDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIAN 145 (157)
Q Consensus 93 ~~~~~~~~r~v~clvLVS-DDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD 145 (157)
++.+.+...|+++-+..+ ..-|-..+.+++.+.+..+||+..+ |+.+...++
T Consensus 18 ~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GG-DGTi~ev~n 70 (293)
T TIGR03702 18 EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGG-DGTLREVAT 70 (293)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcC-ChHHHHHHH
Confidence 333444444454332222 2244455555554444444444333 344444443
No 296
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=61.02 E-value=32 Score=29.57 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=37.9
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccC-cceEEEEcCC-----cchHHHHHHHHHcCCe
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRR-FGCLVVVSDD-----SDFVEVFQEATLRWLK 128 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~-v~clvLVSDD-----sDF~~~lr~Arer~l~ 128 (157)
++..+|+..|+-|..+..-|. .+.-+...+..+- +.+ .+.|++.++. .+-..+++.|++.|+.
T Consensus 151 ~l~~~l~~~gi~v~~~~~~~~-~~~d~~~~L~~lk-~~~~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~ 219 (382)
T cd06371 151 KLASALRAHGLPVGLVTSMGP-DEKGAREALKKVR-SADRVRVVIMCMHSVLIGGEEQRLLLETALEMGMT 219 (382)
T ss_pred HHHHHHHHCCCcEEEEEEecC-CHHHHHHHHHHHh-cCCCcEEEEEEeeccccCcHHHHHHHHHHHHcCCc
Confidence 466778888976654332222 1223444444444 344 5666665544 3447899999999998
No 297
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=60.99 E-value=8.5 Score=33.22 Aligned_cols=49 Identities=6% Similarity=0.047 Sum_probs=39.2
Q ss_pred EcCCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchhhhhcCC
Q 045172 109 VSDDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWSDLLMGK 157 (157)
Q Consensus 109 VSDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~ev~~Gk 157 (157)
.++-....+++...+..|.++-++=|..+..+...+.+.-+|-|+-+|.
T Consensus 106 ~~~~~~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~ 154 (234)
T cd00003 106 AGQAEKLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGP 154 (234)
T ss_pred hcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh
Confidence 3444556778888899999999999988888888888888888887773
No 298
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=60.96 E-value=33 Score=25.01 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=44.5
Q ss_pred ccCCCc------HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhc-cCcceEEEEcCCc-------chHHHHHHHHHc
Q 045172 60 KVGYGF------ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDK-RRFGCLVVVSDDS-------DFVEVFQEATLR 125 (157)
Q Consensus 60 kvgygl------a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~-r~v~clvLVSDDs-------DF~~~lr~Arer 125 (157)
+.||.+ |..|+..|+.|..|..-+...| .++.+++-+ ..++.++-+++.. |=-.+.|.|.+.
T Consensus 23 ~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~g~----~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~ 98 (112)
T cd00532 23 SDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGE----PTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLY 98 (112)
T ss_pred HCCCEEEECcHHHHHHHHcCCceEEEEecCCCCC----cHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHc
Confidence 557655 8899999999999854433111 345666667 7889888877533 244566777777
Q ss_pred CCeEE
Q 045172 126 WLKMV 130 (157)
Q Consensus 126 ~l~tV 130 (157)
|+..+
T Consensus 99 ~Ip~~ 103 (112)
T cd00532 99 KIPVT 103 (112)
T ss_pred CCCEE
Confidence 66544
No 299
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=60.93 E-value=29 Score=26.48 Aligned_cols=53 Identities=23% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHhhccCcceEEEEcCCcch----HHHHHHHHHcCCeEEEEcCCCchHHHhhhhcc
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSDF----VEVFQEATLRWLKMVVVGDMSDGALKRIANAF 147 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsDF----~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~ 147 (157)
++.+..+ .+|--.||++++|.+= ..+...|++.|+..+.+|+. ..|++++-..
T Consensus 36 ~~v~kai-kkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk--~eLG~a~Gk~ 92 (122)
T PRK04175 36 NETTKAV-ERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK--KDLGKAAGLE 92 (122)
T ss_pred HHHHHHH-HcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH--HHHHHHhCCC
Confidence 3456666 6788899999999843 57788899999999888865 5788777654
No 300
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=60.80 E-value=6.3 Score=29.55 Aligned_cols=72 Identities=15% Similarity=-0.008 Sum_probs=44.5
Q ss_pred CcHHHHHhhceEEEEecCC-Cc--cHHHHH---HHH-HHHHhhccCcceEEEEcC--------CcchHHHHHHHHHcCCe
Q 045172 64 GFADELKRAWFWVRMVLVK-PQ--DADVLL---RNY-MVAMVDKRRFGCLVVVSD--------DSDFVEVFQEATLRWLK 128 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dk-pq--AAD~AL---~~~-~~~~~~~r~v~clvLVSD--------DsDF~~~lr~Arer~l~ 128 (157)
++.+.|+++|+.|++++.. .+ ....-+ .-+ ..+-......|.|++.+- +.++.+.|+.+.+++-.
T Consensus 17 ~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (165)
T cd03134 17 YPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKP 96 (165)
T ss_pred HHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCe
Confidence 5677899999999999755 22 111111 111 011111124688888873 34566778888888888
Q ss_pred EEEEcCC
Q 045172 129 MVVVGDM 135 (157)
Q Consensus 129 tVVVGd~ 135 (157)
.+.|+.+
T Consensus 97 i~~ic~G 103 (165)
T cd03134 97 VAAICHG 103 (165)
T ss_pred EEEEchH
Confidence 8888877
No 301
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=60.69 E-value=33 Score=27.66 Aligned_cols=64 Identities=16% Similarity=0.038 Sum_probs=46.6
Q ss_pred cHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEc----CCcchHHHHHHHHHcCCe---EEEEcCC
Q 045172 65 FADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVS----DDSDFVEVFQEATLRWLK---MVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS----DDsDF~~~lr~Arer~l~---tVVVGd~ 135 (157)
.+.-|+.+||.|.-. ++.|. +.+.+.+...+.+.++|=+ .-..+..+++..++.|+. .|+||..
T Consensus 104 v~~~l~~~G~~vi~LG~~vp~-------e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~ 175 (197)
T TIGR02370 104 VVTMLRANGFDVIDLGRDVPI-------DTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGA 175 (197)
T ss_pred HHHHHHhCCcEEEECCCCCCH-------HHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEECh
Confidence 456799999999965 66665 4556666677888776643 335688899999999774 6777776
No 302
>PRK12452 cardiolipin synthetase; Reviewed
Probab=60.66 E-value=53 Score=30.51 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=49.5
Q ss_pred ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEc----CCcchHHHHHHHHHcCCeEEEEcCC-CchHHHh
Q 045172 73 WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVS----DDSDFVEVFQEATLRWLKMVVVGDM-SDGALKR 142 (157)
Q Consensus 73 Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS----DDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r 142 (157)
...|+.+++.|...+..+...+++++. .-=..|.+.| .|..+...|+.|..+|+++-++=++ +|..+..
T Consensus 328 ~~~~q~~~sgp~~~~~~i~~~~l~~I~-~A~~~I~I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~~~D~~~~~ 401 (509)
T PRK12452 328 EGAVQIVASGPSSDDKSIRNTLLAVMG-SAKKSIWIATPYFIPDQETLTLLRLSAISGIDVRILYPGKSDSIISD 401 (509)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHHH-HhhhEEEEECCccCCCHHHHHHHHHHHHcCCEEEEEcCCCCChHHHH
Confidence 357899999998777788888888884 2223444443 5578889999999999999887765 4444433
No 303
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=60.62 E-value=39 Score=27.14 Aligned_cols=78 Identities=26% Similarity=0.233 Sum_probs=51.1
Q ss_pred hcCcccC-CC-------cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC----cchHHHHHHHH
Q 045172 56 ILTPKVG-YG-------FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD----SDFVEVFQEAT 123 (157)
Q Consensus 56 ~l~pkvg-yg-------la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD----sDF~~~lr~Ar 123 (157)
+++.|.| .| ++..|+.+||.|-. +.--|++|.++..- + ...++.+++-|=+ .+|.++.+.+|
T Consensus 15 vlvak~GlDgHd~gakvia~~l~d~GfeVi~-~g~~~tp~e~v~aA----~-~~dv~vIgvSsl~g~h~~l~~~lve~lr 88 (143)
T COG2185 15 VLVAKLGLDGHDRGAKVIARALADAGFEVIN-LGLFQTPEEAVRAA----V-EEDVDVIGVSSLDGGHLTLVPGLVEALR 88 (143)
T ss_pred EEEeccCccccccchHHHHHHHHhCCceEEe-cCCcCCHHHHHHHH----H-hcCCCEEEEEeccchHHHHHHHHHHHHH
Confidence 5556666 22 57889999999987 55555666655433 3 3556666655544 46888899999
Q ss_pred HcCCeEE--EEcCC-CchH
Q 045172 124 LRWLKMV--VVGDM-SDGA 139 (157)
Q Consensus 124 er~l~tV--VVGd~-~~~~ 139 (157)
|+|+.-+ ++|.. .++.
T Consensus 89 e~G~~~i~v~~GGvip~~d 107 (143)
T COG2185 89 EAGVEDILVVVGGVIPPGD 107 (143)
T ss_pred HhCCcceEEeecCccCchh
Confidence 9888754 45554 4454
No 304
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=60.59 E-value=6.1 Score=32.40 Aligned_cols=69 Identities=23% Similarity=0.175 Sum_probs=40.1
Q ss_pred CCcHHHHHhhceEEEEec---CC-CccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHH-----HcCCeEEEEc
Q 045172 63 YGFADELKRAWFWVRMVL---VK-PQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEAT-----LRWLKMVVVG 133 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~---dk-pqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Ar-----er~l~tVVVG 133 (157)
.-|+..|+..|+.|..++ .. |...+.. +.+.+...++|++++-|... +..+++.+. -.++..++||
T Consensus 143 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~----~~~~~~~~~~d~v~ftS~~~-~~~~~~~~~~~~~~~~~~~~~~ig 217 (255)
T PRK05752 143 ELLAERLREQGASVDYLELYRRCLPDYPAGT----LLQRVEAERLNGLVVSSGQG-FEHLQQLAGADWPELARLPLFVPS 217 (255)
T ss_pred HHHHHHHHHCCCEEeEEEEEeecCCCCCHHH----HHHHHHhCCCCEEEECCHHH-HHHHHHHhChhHHHhcCceEEEeC
Confidence 468999999999988763 12 2211222 23334356788888776654 433333321 2456667777
Q ss_pred CCC
Q 045172 134 DMS 136 (157)
Q Consensus 134 d~~ 136 (157)
..+
T Consensus 218 ~~t 220 (255)
T PRK05752 218 PRV 220 (255)
T ss_pred HHH
Confidence 764
No 305
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=60.51 E-value=43 Score=28.83 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=52.9
Q ss_pred hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhc
Q 045172 72 AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLKMVVVGDMSDGALKRIANA 146 (157)
Q Consensus 72 AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~ 146 (157)
+-+..++.+.+- .-...++.+.+.+...|.+-.+.++... |=.++++.|...+..+|+++.+ |+.+.+.++.
T Consensus 5 ~~~i~Np~sG~~--~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG-DGTv~eving 77 (301)
T COG1597 5 ALLIYNPTSGKG--KAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG-DGTVNEVANG 77 (301)
T ss_pred EEEEEccccccc--chhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC-cchHHHHHHH
Confidence 344444444422 2345677788888888888888888888 8888888888899999999888 6778777653
No 306
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=60.45 E-value=56 Score=28.48 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=49.7
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceE-EEEcCCcchH---HHHHHHHHcCCeEEE-EcCCCchH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCL-VVVSDDSDFV---EVFQEATLRWLKMVV-VGDMSDGA 139 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~cl-vLVSDDsDF~---~~lr~Arer~l~tVV-VGd~~~~~ 139 (157)
|+.+|++.|=.+-.|.|+-- .+. +..++.+.+...|++++ ..|..++... .+++.+++.+...|| ||.++...
T Consensus 21 l~~~l~~~g~~~livtd~~~-~~~-~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D 98 (366)
T PRK09423 21 LGEYLKPLGKRALVIADEFV-LGI-VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLD 98 (366)
T ss_pred HHHHHHHcCCEEEEEEChhH-HHH-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 55677776755556676543 333 77888888877788763 3465555555 566777777766555 88886544
Q ss_pred HHhhh
Q 045172 140 LKRIA 144 (157)
Q Consensus 140 L~r~A 144 (157)
....+
T Consensus 99 ~aK~i 103 (366)
T PRK09423 99 TAKAV 103 (366)
T ss_pred HHHHH
Confidence 44443
No 307
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.37 E-value=71 Score=26.00 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=32.6
Q ss_pred HHHHHHHhhc-cCcceEEEEcCCcchHHHHHHHHHcCCe----EEEEc-CCCchHHHhhh
Q 045172 91 RNYMVAMVDK-RRFGCLVVVSDDSDFVEVFQEATLRWLK----MVVVG-DMSDGALKRIA 144 (157)
Q Consensus 91 ~~~~~~~~~~-r~v~clvLVSDDsDF~~~lr~Arer~l~----tVVVG-d~~~~~L~r~A 144 (157)
...+.+++.. ..+++|+ +++|.-=..+++.++++|++ ..||| |.++..+....
T Consensus 190 ~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vp~di~vig~D~~~~~~~~~~ 248 (305)
T cd06324 190 YEQAENLLKRYPDVRLIW-AANDQMAFGALRAAKEAGRKPGRDVLFGGVNWSPEALRAIK 248 (305)
T ss_pred HHHHHHHHHHCCCccEEE-ECCchHHHHHHHHHHHcCCCcCCCEEEEecCCCHHHHHHHH
Confidence 3345555532 2466544 56666667899999999986 56666 44554444433
No 308
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=60.31 E-value=30 Score=29.05 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=39.2
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC-CcchHHHHHH-HHHcCCeEEEEcCC----Cch
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD-DSDFVEVFQE-ATLRWLKMVVVGDM----SDG 138 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD-DsDF~~~lr~-Arer~l~tVVVGd~----~~~ 138 (157)
.|++|+..|+.|.-+.-..+....++...+...+...+++.|.++.- |-.+..-|+. +.+.|+...++-|. ++.
T Consensus 54 fa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~~l~~~~~~~~i~~~~~~~~~Fl~s~~ 133 (224)
T PF04244_consen 54 FADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQRLESLAQQLGIPLEVLEDPHFLTSRE 133 (224)
T ss_dssp HHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHHHHHH----SSS-EEEE--TTSSS-HH
T ss_pred HHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHhhhcccCCceEEeCCCCccCCHH
Confidence 47899999999999854433332255555556666678877766543 3344444544 45589999998886 334
Q ss_pred HHHhhhh
Q 045172 139 ALKRIAN 145 (157)
Q Consensus 139 ~L~r~AD 145 (157)
.+..+++
T Consensus 134 ~f~~~~~ 140 (224)
T PF04244_consen 134 EFAEWFE 140 (224)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 4444443
No 309
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=60.14 E-value=26 Score=25.89 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=34.3
Q ss_pred CccHHHHHHHHHHHHhhc-----cCc-ceEEEEcCC---cchHHHHHHHHH-cCCeEEEEcCCC
Q 045172 83 PQDADVLLRNYMVAMVDK-----RRF-GCLVVVSDD---SDFVEVFQEATL-RWLKMVVVGDMS 136 (157)
Q Consensus 83 pqAAD~AL~~~~~~~~~~-----r~v-~clvLVSDD---sDF~~~lr~Are-r~l~tVVVGd~~ 136 (157)
.-+...||. ++.+++.. .+. ..++|+||- .+-....+.+++ .|++++.||-+.
T Consensus 79 ~T~l~~aL~-~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~l~~~~~v~v~~vg~g~ 141 (163)
T cd01476 79 TTATGAAIE-VALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRAVPNIETFAVGTGD 141 (163)
T ss_pred CccHHHHHH-HHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHHHhhcCCCEEEEEECCC
Confidence 345666664 44455521 122 568999984 234567788888 899999888774
No 310
>PRK05967 cystathionine beta-lyase; Provisional
Probab=60.09 E-value=26 Score=31.53 Aligned_cols=84 Identities=12% Similarity=-0.031 Sum_probs=52.4
Q ss_pred hhcCcccCCCcHH-----HHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEc------CCcchHHHHHHHH
Q 045172 55 AILTPKVGYGFAD-----ELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVS------DDSDFVEVFQEAT 123 (157)
Q Consensus 55 ~~l~pkvgygla~-----eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS------DDsDF~~~lr~Ar 123 (157)
.|+.|.-+||--. .+++.|+.|..+...+. . .+.+.+ +.+...+++-| .-.|...+.+.|+
T Consensus 105 ~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~---e----~l~~al-~~~TklV~lesPsNP~l~v~dl~~I~~la~ 176 (395)
T PRK05967 105 HALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIG---A----GIAKLM-RPNTKVVHTEAPGSNTFEMQDIPAIAEAAH 176 (395)
T ss_pred EEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCH---H----HHHHhc-CcCceEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 4777777898643 47899999999853211 1 233344 34444444443 4568899999999
Q ss_pred HcCCeEEEEcCCC------chHHHhhhhccc
Q 045172 124 LRWLKMVVVGDMS------DGALKRIANAFF 148 (157)
Q Consensus 124 er~l~tVVVGd~~------~~~L~r~AD~~f 148 (157)
+.|+-+|| |.+ -+-|.-.||+-+
T Consensus 177 ~~g~~vvV--D~t~a~p~~~~pl~~GaDivv 205 (395)
T PRK05967 177 RHGAIVMM--DNTWATPLYFRPLDFGVDISI 205 (395)
T ss_pred HhCCEEEE--ECCccCceecChhHcCCCEEE
Confidence 99975544 663 244444566554
No 311
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=60.06 E-value=52 Score=29.42 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=45.2
Q ss_pred cHHHHHhhceEEEEe---cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHH-HHHHHHcCCeEEEEcCC
Q 045172 65 FADELKRAWFWVRMV---LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEV-FQEATLRWLKMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V---~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~-lr~Arer~l~tVVVGd~ 135 (157)
|..+|++.|+-|-.+ +..++..+......+.... ..+.+.|||.++..+...+ ++.+|+.+.+.+.||..
T Consensus 192 ~~~~~~~~gi~I~~~~~i~~~~~~~~~~~~~~l~~i~-~~~arvIvl~~~~~~~~~l~~~~~~~~~~~~~wi~s~ 265 (469)
T cd06365 192 LREEMQRNGICLAFVEKIPVNMQLYLTRAEKYYNQIM-TSSAKVIIIYGDTDSLLEVSFRLWQYLLIGKVWITTS 265 (469)
T ss_pred HHHHHHHCCeEEEEEEEecCCchhhHHHHHHHHHHhh-cCCCeEEEEEcCcHHHHHHHHHHHHhccCceEEEeec
Confidence 456788889877653 4444333233344444444 5789999999998887665 56666677777777754
No 312
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=60.00 E-value=25 Score=26.49 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.0
Q ss_pred ceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCC--CchHHHhhhh
Q 045172 104 GCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDM--SDGALKRIAN 145 (157)
Q Consensus 104 ~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~--~~~~L~r~AD 145 (157)
..++|+|| +.|...+.+.+++.|+..++||-+ ....|.+.|.
T Consensus 105 k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 105 KVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred EEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCcCCHHHHHHHhC
Confidence 46888887 235677888999999999999875 2344554443
No 313
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=59.77 E-value=9.8 Score=32.92 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=46.4
Q ss_pred eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchhhh
Q 045172 74 FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWSDL 153 (157)
Q Consensus 74 v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~ev 153 (157)
-+|-+||+||+ +.-...|.|+ .++-+...++++..+..|.++-.+=|..+..+.-.+++.-++-|+
T Consensus 85 ~~vtLVPEkr~-----------ElTTegGldv---~~~~~~l~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VEL 150 (237)
T TIGR00559 85 EQVTLVPEARD-----------EVTTEGGLDV---ARLKDKLCELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEI 150 (237)
T ss_pred CEEEECCCCCC-----------CccCCcCchh---hhCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEE
Confidence 46677777777 1112333333 334444567788888888888888888777888888877777777
Q ss_pred hcC
Q 045172 154 LMG 156 (157)
Q Consensus 154 ~~G 156 (157)
-+|
T Consensus 151 hTG 153 (237)
T TIGR00559 151 HTG 153 (237)
T ss_pred ech
Confidence 666
No 314
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=59.68 E-value=18 Score=26.24 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=28.9
Q ss_pred ceEEEEc-CCcc---hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcc
Q 045172 104 GCLVVVS-DDSD---FVEVFQEATLRWLKMVVVGDMSDGALKRIANAF 147 (157)
Q Consensus 104 ~clvLVS-DDsD---F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~ 147 (157)
++++++| ++.. -..+++.+++.|.++++|.+.. .. .+.+|.-
T Consensus 63 ~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~~~-~s-~~~~d~~ 108 (153)
T cd05009 63 TPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDG-DA-KDLADVV 108 (153)
T ss_pred CcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEecCC-cc-cccCCeE
Confidence 5666777 4432 4568899999999999998864 22 4555543
No 315
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=59.39 E-value=40 Score=30.59 Aligned_cols=70 Identities=23% Similarity=0.132 Sum_probs=45.7
Q ss_pred hhcCcccCCCcH-----HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC------cchHHHHHHHH
Q 045172 55 AILTPKVGYGFA-----DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD------SDFVEVFQEAT 123 (157)
Q Consensus 55 ~~l~pkvgygla-----~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD------sDF~~~lr~Ar 123 (157)
.|++|...||=- ..|.+.|+.|..|++ |. |. .++...+ +.+...|++.+-- .|...+.+.|+
T Consensus 110 ~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-~~--d~---e~l~~~l-~~~tk~V~~e~~~Np~~~v~di~~I~~la~ 182 (437)
T PRK05613 110 HIVTSPRLYGGTETLFLVTLNRLGIEVTFVEN-PD--DP---ESWQAAV-QPNTKAFFGETFANPQADVLDIPAVAEVAH 182 (437)
T ss_pred EEEECCCccHHHHHHHHHHHHhcCeEEEEECC-CC--CH---HHHHHhC-CccCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 467777777743 567899999999973 33 22 2233344 3444455544332 48899999999
Q ss_pred HcCCeEEE
Q 045172 124 LRWLKMVV 131 (157)
Q Consensus 124 er~l~tVV 131 (157)
+.|+-+||
T Consensus 183 ~~gi~liv 190 (437)
T PRK05613 183 RNQVPLIV 190 (437)
T ss_pred HcCCeEEE
Confidence 99987665
No 316
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=59.32 E-value=52 Score=24.47 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=42.9
Q ss_pred CcHHHHHh-hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC--C-----cchHHHHHHHHHcCCeEE
Q 045172 64 GFADELKR-AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD--D-----SDFVEVFQEATLRWLKMV 130 (157)
Q Consensus 64 gla~eLrR-AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD--D-----sDF~~~lr~Arer~l~tV 130 (157)
|-+..|+. .|+.|+.|.-.|.-.| .++.+++-+..++-++-.+| + .|--.+.|.|-+.++..+
T Consensus 35 gTa~~L~~~~Gi~v~~vk~~~~~g~----~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 35 TTGLLIQEATGLTVNRMKSGPLGGD----QQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLA 105 (115)
T ss_pred hHHHHHHHhhCCcEEEEecCCCCch----hHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEE
Confidence 55888999 9999999922234444 45677776788888887777 2 234456666777776544
No 317
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=59.23 E-value=54 Score=25.25 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=37.3
Q ss_pred CcHHHHHhhceEEEEecCCCcc-HHHHHHHHHHHHhhccCcceEEEEcCCc----chHHHHHHHHHcCC---eEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVKPQD-ADVLLRNYMVAMVDKRRFGCLVVVSDDS----DFVEVFQEATLRWL---KMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqA-AD~AL~~~~~~~~~~r~v~clvLVSDDs----DF~~~lr~Arer~l---~tVVVGd~ 135 (157)
.+=..|+..|+.+-.++.+|.. ++..|...=++ .=++ .++.|||. +=..+...++.-|+ .+++|||+
T Consensus 113 ~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~----~~f~-~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~vGD~ 187 (197)
T TIGR01548 113 GLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE----ILFP-VQIWMEDCPPKPNPEPLILAAKALGVEACHAAMVGDT 187 (197)
T ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch----hhCC-EEEeecCCCCCcCHHHHHHHHHHhCcCcccEEEEeCC
Confidence 4445688999999999999872 33333222111 1123 34445542 22223333444455 58999998
No 318
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=59.18 E-value=31 Score=29.06 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=47.3
Q ss_pred hHHHHHHHHhhcCcccC-CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcc---eEEEEcCCcc---hHHH
Q 045172 46 MEKNKMAASAILTPKVG-YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFG---CLVVVSDDSD---FVEV 118 (157)
Q Consensus 46 ~~kY~~Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~---clvLVSDDsD---F~~~ 118 (157)
.+.|.....+-..|.-+ -.+-.+|+..|+.+-.|+.+++.-...+.+.+.+. .|++ .+++=+|+.. ....
T Consensus 102 w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~---lGi~~~f~~i~~~d~~~~~Kp~~~ 178 (237)
T TIGR01672 102 WEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKN---FHIPAMNPVIFAGDKPGQYQYTKT 178 (237)
T ss_pred HHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHH---hCCchheeEEECCCCCCCCCCCHH
Confidence 34555555555555544 56777889999999999998543122233334332 3443 2333334421 1122
Q ss_pred HHHHHHcCCeEEEEcCC
Q 045172 119 FQEATLRWLKMVVVGDM 135 (157)
Q Consensus 119 lr~Arer~l~tVVVGd~ 135 (157)
..+.+.|+ ++.|||+
T Consensus 179 -~~l~~~~i-~i~vGDs 193 (237)
T TIGR01672 179 -QWIQDKNI-RIHYGDS 193 (237)
T ss_pred -HHHHhCCC-eEEEeCC
Confidence 23345665 7899998
No 319
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=59.17 E-value=50 Score=24.12 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=27.3
Q ss_pred HHHHHHhhccCcceEEEEcCCcchHHHHHH-HHHcCC-eEEEEcCCCchHHHhhhhccc
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSDFVEVFQE-ATLRWL-KMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsDF~~~lr~-Arer~l-~tVVVGd~~~~~L~r~AD~~f 148 (157)
+++...+...+.++-+..+...+...-+.. +....- .+|||..+ |+.+...++...
T Consensus 18 ~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GG-DGTl~~vv~~l~ 75 (130)
T PF00781_consen 18 KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGG-DGTLNEVVNGLM 75 (130)
T ss_dssp HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEES-HHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcC-ccHHHHHHHHHh
Confidence 445555545555555555555555555544 222332 34444333 455665555443
No 320
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.15 E-value=13 Score=34.48 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=35.0
Q ss_pred CcceEEEEcCCcc--------hHHHHHHHHHcCCeEEEEcCCCchHHHh-hhhcccc
Q 045172 102 RFGCLVVVSDDSD--------FVEVFQEATLRWLKMVVVGDMSDGALKR-IANAFFS 149 (157)
Q Consensus 102 ~v~clvLVSDDsD--------F~~~lr~Arer~l~tVVVGd~~~~~L~r-~AD~~fs 149 (157)
..+||+++..|.- ....++.|+++|.+.|||.=. ...... .||.|++
T Consensus 166 ~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr-~t~tA~~~AD~~i~ 221 (617)
T cd02770 166 DSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPR-YTDTAVTLADEWIP 221 (617)
T ss_pred cCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCC-CCccccccCCEEEC
Confidence 5799999988842 346678899999999999544 234454 7999874
No 321
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=59.06 E-value=28 Score=28.17 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=38.4
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcce---EEEEcCCcchHHHHHHH-HHcC---CeEEEEcCC
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGC---LVVVSDDSDFVEVFQEA-TLRW---LKMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~c---lvLVSDDsDF~~~lr~A-rer~---l~tVVVGd~ 135 (157)
+-.+|+.+|+.+-.++.+|...- - +.+.+...|++. =.++|++.--...+..+ ++-| -+.++|||+
T Consensus 32 ~L~~L~~~G~~~~ivTN~~~~~~--~---~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~ 104 (242)
T TIGR01459 32 NLNKIIAQGKPVYFVSNSPRNIF--S---LHKTLKSLGINADLPEMIISSGEIAVQMILESKKRFDIRNGIIYLLGHL 104 (242)
T ss_pred HHHHHHHCCCEEEEEeCCCCChH--H---HHHHHHHCCCCccccceEEccHHHHHHHHHhhhhhccCCCceEEEeCCc
Confidence 45678999999999988887321 1 112233445543 24455554334444443 3333 348999996
No 322
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=58.97 E-value=55 Score=23.82 Aligned_cols=64 Identities=25% Similarity=0.133 Sum_probs=39.1
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhc-cCcceEEEEcCCcchHH---HHHHHHHcCC-eEEEEcCC
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDK-RRFGCLVVVSDDSDFVE---VFQEATLRWL-KMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~-r~v~clvLVSDDsDF~~---~lr~Arer~l-~tVVVGd~ 135 (157)
+|+-|+.+|+-|......+ .| +..+.+.. ...+.+++=+-..++.. +++.+|+++- .+||+|..
T Consensus 8 ~aa~l~~~g~~v~~~~~~~--~~-----~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~ 76 (127)
T cd02068 8 LAAVLEDAGFIVAEHDVLS--AD-----DIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGP 76 (127)
T ss_pred HHHHHHHCCCeeeecCCCC--HH-----HHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCc
Confidence 5788999998888854332 22 33333333 56777776665555544 6667777663 45556654
No 323
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=58.95 E-value=13 Score=28.57 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=42.5
Q ss_pred ccCCCcHHHHHhhceEEEEecCC-CccHHHHHH-------HHHHHHhhccCcceEEEEcCCcchHHHHHHHHHc
Q 045172 60 KVGYGFADELKRAWFWVRMVLVK-PQDADVLLR-------NYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLR 125 (157)
Q Consensus 60 kvgygla~eLrRAGv~V~~V~dk-pqAAD~AL~-------~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer 125 (157)
+||+-|+..|.++|+.|..|... +..++.|-. ..+.+.+ ...|.++|-..|+....+.......
T Consensus 20 rVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~--~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 20 RVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEIL--RDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp CCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGG--CC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccccccc--ccCCEEEEEechHHHHHHHHHHHHh
Confidence 78999999999999999998543 434443322 1222333 5678888877777899998888765
No 324
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=58.74 E-value=35 Score=25.13 Aligned_cols=73 Identities=12% Similarity=0.182 Sum_probs=38.0
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcch----HHHHHH-HHHcC---CeEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF----VEVFQE-ATLRW---LKMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF----~~~lr~-Arer~---l~tVVVGd~ 135 (157)
.+-..|+..|+.+-.++..|... ..+..+ .. + ..-++.+ +.|++... .++.+. +++-| -.+++|||+
T Consensus 92 ~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~~-l-~~~f~~i-~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vgD~ 166 (183)
T TIGR01509 92 PLLEALRARGKKLALLTNSPRDH-AVLVQE-LG-L-RDLFDVV-IFSGDVGRGKPDPDIYLLALKKLGLKPEECLFVDDS 166 (183)
T ss_pred HHHHHHHHCCCeEEEEeCCchHH-HHHHHh-cC-C-HHHCCEE-EEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEEcCC
Confidence 34457888899999999988755 222221 11 1 1123433 34544321 123333 23334 468999998
Q ss_pred CchHHHh
Q 045172 136 SDGALKR 142 (157)
Q Consensus 136 ~~~~L~r 142 (157)
. ..+.-
T Consensus 167 ~-~di~a 172 (183)
T TIGR01509 167 P-AGIEA 172 (183)
T ss_pred H-HHHHH
Confidence 3 34433
No 325
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=58.59 E-value=29 Score=24.97 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=41.4
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC------eEEEEcCC
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL------KMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l------~tVVVGd~ 135 (157)
|...+++..|+.+..........+......+...+.+.+.+ -+++++|.-...+++.++++|+ ..|.++|.
T Consensus 30 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pd-aii~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~ 106 (160)
T PF13377_consen 30 GFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPD-AIICSNDRLALGVLRALRELGIRVPQDISVVSFDDS 106 (160)
T ss_dssp HHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSS-EEEESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSS
T ss_pred HHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCc-EEEEcCHHHHHHHHHHHHHcCCcccccccEEEecCc
Confidence 45566677777655442222211111111111133322334 6677999999999999999987 67777775
No 326
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=58.58 E-value=21 Score=23.09 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=26.1
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD 111 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD 111 (157)
+.++.+|+.+|+.|.+...... +...+..+ ...|+..++++.+
T Consensus 18 ~~i~~~Lr~~g~~v~~~~~~~~-----~~~~~~~a-~~~~~~~~i~i~~ 60 (91)
T cd00859 18 LELAEQLRDAGIKAEIDYGGRK-----LKKQFKYA-DRSGARFAVILGE 60 (91)
T ss_pred HHHHHHHHHCCCEEEEecCCCC-----HHHHHHHH-HHcCCCEEEEEcH
Confidence 4567888888888776443211 33333333 3577777777775
No 327
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=58.53 E-value=32 Score=28.97 Aligned_cols=69 Identities=7% Similarity=-0.007 Sum_probs=39.0
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCc--c---eEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRF--G---CLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v--~---clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
-.+-.+|+..|+.+-.|+.+++.-.....+.+.+ ..|+ + -+++-.|++--.+-...+.+.|+ ++.|||.
T Consensus 120 ~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk---~~gip~~~~f~vil~gd~~~K~~K~~~l~~~~i-~I~IGDs 193 (237)
T PRK11009 120 RQLIDMHVKRGDSIYFITGRTATKTETVSKTLAD---DFHIPADNMNPVIFAGDKPGQYTKTQWLKKKNI-RIFYGDS 193 (237)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHH---HcCCCcccceeEEEcCCCCCCCCHHHHHHhcCC-eEEEcCC
Confidence 4567788899999999999775322223333332 2455 3 34444443211222234445666 7889998
No 328
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=58.48 E-value=18 Score=24.45 Aligned_cols=56 Identities=14% Similarity=-0.092 Sum_probs=39.6
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
+.++.+|+.+|+.|.+ .+.+. .+.+++-.+- ..|++.+++|.++. ..-.+|.|=|.
T Consensus 21 ~~la~~Lr~~g~~v~~-d~~~~----~l~k~i~~a~-~~g~~~~iiiG~~e-----------~~~~~v~vk~~ 76 (94)
T cd00861 21 EKLYAELQAAGVDVLL-DDRNE----RPGVKFADAD-LIGIPYRIVVGKKS-----------AAEGIVEIKVR 76 (94)
T ss_pred HHHHHHHHHCCCEEEE-ECCCC----CcccchhHHH-hcCCCEEEEECCch-----------hhCCEEEEEEC
Confidence 5678999999999987 33322 5666666665 79999999999753 33346666555
No 329
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=58.47 E-value=28 Score=30.26 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=43.4
Q ss_pred HHhhceEEEE--ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEE----EEcCC
Q 045172 69 LKRAWFWVRM--VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMV----VVGDM 135 (157)
Q Consensus 69 LrRAGv~V~~--V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tV----VVGd~ 135 (157)
+...|..|-. +.... ..| .... +.-+...+.++|+|.+...+-..+++.|++-|..+- ++|+.
T Consensus 147 ~~~~g~~v~~~~~~~~~-~~d--~~~~-L~~ik~~~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 215 (371)
T cd06388 147 AGQNGWQVSAICVENFN-DAS--YRRL-LEDLDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANL 215 (371)
T ss_pred hHhcCCeeeeEEeccCC-cHH--HHHH-HHHhcccccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccC
Confidence 3555766554 32221 223 3333 333447799999999999999999999999999885 77764
No 330
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=58.39 E-value=28 Score=31.74 Aligned_cols=72 Identities=13% Similarity=0.207 Sum_probs=47.3
Q ss_pred hhcCcccCCCc------HHHHHhhceEEEEe---cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHc
Q 045172 55 AILTPKVGYGF------ADELKRAWFWVRMV---LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLR 125 (157)
Q Consensus 55 ~~l~pkvgygl------a~eLrRAGv~V~~V---~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer 125 (157)
.++.+...||. ..++++.|+-|-.. +..+.+.|. ...+.. +...+.+.||+.+...+...+++.|++.
T Consensus 191 aiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~--~~~l~k-lk~~~a~vVvl~~~~~~~~~ll~qa~~~ 267 (510)
T cd06364 191 GTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEI--QRVVEV-IQNSTAKVIVVFSSGPDLEPLIKEIVRR 267 (510)
T ss_pred EEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHH--HHHHHH-HHhcCCeEEEEEeCcHHHHHHHHHHHHh
Confidence 34445555663 35677788876543 332333332 222323 3356899999999999999999999999
Q ss_pred CCeE
Q 045172 126 WLKM 129 (157)
Q Consensus 126 ~l~t 129 (157)
|++-
T Consensus 268 g~~~ 271 (510)
T cd06364 268 NITG 271 (510)
T ss_pred CCCC
Confidence 9864
No 331
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=58.23 E-value=62 Score=22.73 Aligned_cols=65 Identities=18% Similarity=0.042 Sum_probs=38.9
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHH---HHHHHHcC--CeEEEEcCC
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEV---FQEATLRW--LKMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~---lr~Arer~--l~tVVVGd~ 135 (157)
++..|+++|+.|..... +-....+.+ .+...+.+.+++=+....+... +..++++. =..+++|..
T Consensus 19 ~~~~l~~~G~~v~~l~~--~~~~~~~~~----~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~ 88 (125)
T cd02065 19 VAIALRDNGFEVIDLGV--DVPPEEIVE----AAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGA 88 (125)
T ss_pred HHHHHHHCCCEEEEcCC--CCCHHHHHH----HHHHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 46679999999998733 222233333 3334788888887777765444 34555544 255666665
No 332
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=57.51 E-value=17 Score=35.15 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=35.0
Q ss_pred cCcceEEEEcCCcc-----hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSD-----FVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsD-----F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...++||++..+.+ +..-++.|+++|.+.|||.=. .......||.|++
T Consensus 154 ~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr-~t~ta~~AD~wl~ 206 (679)
T cd02763 154 EHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPV-RTGYAAIADEWVP 206 (679)
T ss_pred HhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCc-CCcchHhhCeecC
Confidence 35689999976543 344567889999999999543 3456788999874
No 333
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=57.48 E-value=38 Score=28.94 Aligned_cols=63 Identities=14% Similarity=0.088 Sum_probs=42.9
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
+|..+|+..|+-|.... .+...+..+...+..+- +.+ +.|++..+..+...+++.|++.|+..
T Consensus 167 ~l~~~~~~~gi~v~~~~-~~~~~~~d~~~~l~~ik-~~~-~iii~~~~~~~~~~i~~~a~~~g~~~ 229 (405)
T cd06385 167 GLYMELKKNNITVVDLV-FEEDDLINYTTLLQDIK-QKG-RVIYVCCSPDIFRRLMLQFWREGLPS 229 (405)
T ss_pred HHHHHHHhCCeEEEEee-ccCCchhhHHHHHHHHh-hcc-eEEEEeCCHHHHHHHHHHHHHcCCCC
Confidence 45667888898876543 32111334444444443 334 88888899999999999999999875
No 334
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=57.45 E-value=31 Score=31.05 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=29.1
Q ss_pred CcchHHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccch
Q 045172 112 DSDFVEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 112 DsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
..+-..+++..++.|-.+..|||+ +|-.--+.||+.+..
T Consensus 392 p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Advgia~ 431 (499)
T TIGR01494 392 PEEKAALVEALQKKGRVVAMTGDGVNDAPALKKADVGIAM 431 (499)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCChhhHHHHHhCCCcccc
Confidence 345557788888899999999999 665555688877543
No 335
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=57.37 E-value=32 Score=30.47 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=50.6
Q ss_pred CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhh-----------------ccCcceEEEEcCCc-----chHHHHHH
Q 045172 64 GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVD-----------------KRRFGCLVVVSDDS-----DFVEVFQE 121 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~-----------------~r~v~clvLVSDDs-----DF~~~lr~ 121 (157)
||--.|++.-+ -+.+++.--+.+..+....++.|. ..|.=.-+||||+- ++.+++..
T Consensus 238 gl~EvL~~~~v-~~~l~d~k~~~E~~~l~~f~~~l~kd~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~~~l~~~ 316 (351)
T TIGR00111 238 GINEVLKRGLV-ARILQETRYAKEIMVIDEFLEHLAKDGDKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQREEIEKLLDS 316 (351)
T ss_pred HHHHHHhChHH-HHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEECHHHHHHHHHcCCceEEEEecchhhhHHHHHHHHHH
Confidence 44444444333 233355555667777777776664 33445678999987 89999999
Q ss_pred HHHcCCeEEEEcCCCc
Q 045172 122 ATLRWLKMVVVGDMSD 137 (157)
Q Consensus 122 Arer~l~tVVVGd~~~ 137 (157)
|++.|-+++||+..++
T Consensus 317 v~~~gg~V~i~Ss~~e 332 (351)
T TIGR00111 317 VESMGGKVVILSTEHE 332 (351)
T ss_pred HHHcCCEEEEEcCCCc
Confidence 9999999999998853
No 336
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=57.17 E-value=49 Score=26.44 Aligned_cols=63 Identities=16% Similarity=-0.111 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC---chHH-Hhhhhccc-chhhhh
Q 045172 88 VLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS---DGAL-KRIANAFF-SWSDLL 154 (157)
Q Consensus 88 ~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~---~~~L-~r~AD~~f-sW~ev~ 154 (157)
-....++++.+ +...+..+.|-|. ..+ +..|+..|++||.|.-+. +..+ ...+|..+ +|+++.
T Consensus 154 p~~~~~~~~~l-~~~p~~~l~IGDs--~~D-i~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~ 221 (229)
T PRK13226 154 PLPLLVAAERI-GVAPTDCVYVGDD--ERD-ILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLW 221 (229)
T ss_pred HHHHHHHHHHh-CCChhhEEEeCCC--HHH-HHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHH
Confidence 45566677666 4445555666665 355 778999999999885441 1223 34578877 577764
No 337
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=57.04 E-value=83 Score=27.37 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=45.4
Q ss_pred HHHHHhhce--EEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchH---HHHHHHHHcCCeEEE-EcCCCchH
Q 045172 66 ADELKRAWF--WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV---EVFQEATLRWLKMVV-VGDMSDGA 139 (157)
Q Consensus 66 a~eLrRAGv--~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~---~~lr~Arer~l~tVV-VGd~~~~~ 139 (157)
..++++-|. .|-.|.|..- .+. ....+.+.+...+ ++.+.+..++.+. .++..+++.+...|| ||.++...
T Consensus 25 ~~~l~~~~~~~~~livtd~~~-~~~-~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D 101 (350)
T PRK00843 25 GDVCSDLKLTGRALIVTGPTT-KKI-AGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVID 101 (350)
T ss_pred HHHHHHhCCCCeEEEEECCcH-HHH-HHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHH
Confidence 344555553 5556666443 344 3466777776666 6666677777766 566667777776666 77775444
Q ss_pred HHhh
Q 045172 140 LKRI 143 (157)
Q Consensus 140 L~r~ 143 (157)
+...
T Consensus 102 ~ak~ 105 (350)
T PRK00843 102 VAKL 105 (350)
T ss_pred HHHH
Confidence 4443
No 338
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=56.97 E-value=17 Score=35.47 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=36.6
Q ss_pred cCcceEEEEcCCcc------hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccch
Q 045172 101 RRFGCLVVVSDDSD------FVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 101 r~v~clvLVSDDsD------F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
...+||+++-.|.. +...+..||++|.+.||| |.-.......||.|++-
T Consensus 172 ~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvV-DPr~t~ta~~AD~wlpi 226 (760)
T cd02760 172 PLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQV-EPHLSVTGACSAEWVPI 226 (760)
T ss_pred hcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEE-cCCCCcchhhcCeEeCc
Confidence 35789999987763 345567788999999999 55334667789999853
No 339
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=56.90 E-value=70 Score=22.91 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=15.9
Q ss_pred cHHHHHhhceEEEEecCCC
Q 045172 65 FADELKRAWFWVRMVLVKP 83 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkp 83 (157)
+-..|+.+|+.+-.++.+|
T Consensus 33 ~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 33 ALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred HHHHHHHCCCEEEEEECCc
Confidence 4467889999999999888
No 340
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=56.82 E-value=28 Score=25.49 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=26.8
Q ss_pred CcceEEEEcC-----CcchHHHHHHHHHcCC--eEEEEcCC-CchHHHhhhhc
Q 045172 102 RFGCLVVVSD-----DSDFVEVFQEATLRWL--KMVVVGDM-SDGALKRIANA 146 (157)
Q Consensus 102 ~v~clvLVSD-----DsDF~~~lr~Arer~l--~tVVVGd~-~~~~L~r~AD~ 146 (157)
+...++|+|| +.++...++.+.+.++ .+|+||.. ....|...|+.
T Consensus 99 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~~~~l~~ia~~ 151 (171)
T cd01461 99 SVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDVNTYLLERLARE 151 (171)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCccCHHHHHHHHHc
Confidence 5688999999 3345556666554444 45556654 33456666653
No 341
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=56.73 E-value=18 Score=32.28 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=36.0
Q ss_pred cCcceEEEEcCCc-----chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDS-----DFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDs-----DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...++|+++..|. .+..-++.|+++|.+.|+|+-. .......||.|++
T Consensus 155 ~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~-~s~ta~~Ad~~l~ 207 (512)
T cd02753 155 EEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPR-RTELARFADLHLQ 207 (512)
T ss_pred HhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCC-CccchHhhCeeeC
Confidence 3569999998774 3445567889999999999865 2345678999885
No 342
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=56.67 E-value=20 Score=23.77 Aligned_cols=57 Identities=23% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHH-----HHHHHHHcCCeEEEE
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVE-----VFQEATLRWLKMVVV 132 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~-----~lr~Arer~l~tVVV 132 (157)
|.++..|++.|+.|+.+. +|. | +|. ..=..+++++++..+.+ -|...-++|=+.|++
T Consensus 8 ~a~~~~L~~~g~~v~~~~-~~~--~-~l~---------~~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWR-KPY--E-ALE---------ADDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHCCCeeEEec-ccH--H-HhC---------CCCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 668889999999998854 353 1 332 25568899998866753 455555688555554
No 343
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=56.62 E-value=27 Score=30.10 Aligned_cols=38 Identities=0% Similarity=0.170 Sum_probs=33.0
Q ss_pred hhccCcceEEEEcCCcchHHHHHHHHHcCCeEE----EEcCC
Q 045172 98 VDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMV----VVGDM 135 (157)
Q Consensus 98 ~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tV----VVGd~ 135 (157)
|.+.+.++|+|.+..++-..+++.|++-|+.+- ++|+.
T Consensus 172 ik~~~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~ 213 (370)
T cd06389 172 LENKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANL 213 (370)
T ss_pred hccccceEEEEECCHHHHHHHHHHHHHhCccccceEEEEccC
Confidence 357899999999999999999999999999766 67764
No 344
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=56.45 E-value=94 Score=24.81 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=50.5
Q ss_pred eEEEEecCCCc----cHHHHHHHHHHHHhhccCcc-eEEEEc------CCcchHHHHHHHHHcCC--eEEEEcCC--Cch
Q 045172 74 FWVRMVLVKPQ----DADVLLRNYMVAMVDKRRFG-CLVVVS------DDSDFVEVFQEATLRWL--KMVVVGDM--SDG 138 (157)
Q Consensus 74 v~V~~V~dkpq----AAD~AL~~~~~~~~~~r~v~-clvLVS------DDsDF~~~lr~Arer~l--~tVVVGd~--~~~ 138 (157)
+-+.-++++++ .++.+..+.....+....-+ .+|+.. |..+|++.+......|. =+.+||.. -+.
T Consensus 33 ~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~ 112 (157)
T PRK00103 33 LELIEIPDEKRPKNADAEQIKAKEGERILAALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSP 112 (157)
T ss_pred ceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCH
Confidence 45555566553 44555666666665433323 344433 34689999999888765 56788874 457
Q ss_pred HHHhhhhcccchhh
Q 045172 139 ALKRIANAFFSWSD 152 (157)
Q Consensus 139 ~L~r~AD~~fsW~e 152 (157)
++...||.-+|-..
T Consensus 113 ~v~~~a~~~lSLS~ 126 (157)
T PRK00103 113 AVKKRADQSLSLSK 126 (157)
T ss_pred HHHHhcCceEEecc
Confidence 88889998877543
No 345
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=56.43 E-value=75 Score=24.84 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=35.7
Q ss_pred cHHHHHhh-ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcC
Q 045172 65 FADELKRA-WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGD 134 (157)
Q Consensus 65 la~eLrRA-Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd 134 (157)
+-..|++. |..+..+.......+.+ ...+.+++....-.+.+..++|.-...+++.+++.|+ ...|||=
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~~di~vig~ 215 (275)
T cd06320 144 FTEAIKKASGIEVVASQPADWDREKA-YDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQGKVLVVGT 215 (275)
T ss_pred HHHHHhhCCCcEEEEecCCCccHHHH-HHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCCCCeEEEec
Confidence 34455566 76654432222122222 2344455532221234455566677789999999998 4445553
No 346
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=56.29 E-value=11 Score=32.50 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=31.4
Q ss_pred cceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 103 FGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 103 v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.++++.+.+-.|+..+++.|++.++...|+|.++
T Consensus 21 a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GS 54 (295)
T PRK14649 21 ARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGS 54 (295)
T ss_pred eeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecce
Confidence 4889999999999999999999999999999884
No 347
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=56.03 E-value=73 Score=22.83 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=39.3
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC-CcchH---HHHHHHHHcCC--eEEEEcCC
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD-DSDFV---EVFQEATLRWL--KMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD-DsDF~---~~lr~Arer~l--~tVVVGd~ 135 (157)
++.-|+++|+.|.-.. ++-... .+.+.+...+.+.+++=+. .+.+. ++++..++.+. -.++||..
T Consensus 19 ~~~~l~~~G~~V~~lg--~~~~~~----~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 19 VARALRDAGFEVIDLG--VDVPPE----EIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred HHHHHHHCCCEEEECC--CCCCHH----HHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECC
Confidence 5778999999995532 222223 3444444678887777554 44443 45566666765 44677766
No 348
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=56.02 E-value=41 Score=25.40 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=37.5
Q ss_pred HHHHHHhhccCcceEEEEcCCcch----HHHHHHHHHcCCeEEEEcCCCchHHHhhhhc
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSDF----VEVFQEATLRWLKMVVVGDMSDGALKRIANA 146 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsDF----~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~ 146 (157)
++.+.+| .+|--.||+++.|.+= ..+...|++.++..+.+|+. ..|++++-.
T Consensus 32 ~~v~kai-kkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk--~eLG~a~Gk 87 (117)
T TIGR03677 32 NEVTKAV-ERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK--EDLGAAAGL 87 (117)
T ss_pred HHHHHHH-HcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH--HHHHHHhCC
Confidence 3456666 5677778888888732 56778889999998888865 577776654
No 349
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=55.91 E-value=56 Score=26.51 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=42.1
Q ss_pred HHHHHHhhccCcceEEEEcCCcch----HHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchh
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSDF----VEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWS 151 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsDF----~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~ 151 (157)
..+.+.+ ..|-+..+|+|-|+-| ..+++.+++.|...-||-..+ ..-.-.|=+.+||.
T Consensus 81 ~~i~~~~-~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~viPGiS-s~~~a~a~~g~~l~ 142 (229)
T PRK05576 81 EEIAAEA-EEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETVPGIS-SFTAIASRAGVPLA 142 (229)
T ss_pred HHHHHHH-HcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEeCChh-HHHHHHHHcCCCcc
Confidence 4444544 4677899999999988 788888888898888887764 33344455677887
No 350
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=55.89 E-value=18 Score=30.71 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=40.0
Q ss_pred cHHHHHhhceEEEEecCCCc--cHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 65 FADELKRAWFWVRMVLVKPQ--DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq--AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
+...|+..|+-|..++-.|. +.|.. ..+..+. ..+ +.|++.+...+...+++.|++.|+..
T Consensus 166 ~~~~~~~~g~~v~~~~~~~~~~~~d~~--~~l~~ik-~~~-~vii~~~~~~~~~~~~~qa~~~g~~~ 228 (396)
T cd06373 166 VYTVLKEENITVSDFPFDEDKELDDYK--ELLRDIS-KKG-RVVIMCASPDTVREIMLAAHRLGLTS 228 (396)
T ss_pred HHHHHhhcCceeeEEeecCCccccCHH--HHHHHHH-hcC-cEEEEecCHHHHHHHHHHHHHcCCCC
Confidence 34566667776655544443 23432 3333333 345 88888888889999999999999874
No 351
>PRK09526 lacI lac repressor; Reviewed
Probab=55.78 E-value=64 Score=26.34 Aligned_cols=68 Identities=7% Similarity=0.023 Sum_probs=39.8
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEE-cCCcc-hHHHHHHHHHcCCeEEEEcC
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVV-SDDSD-FVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLV-SDDsD-F~~~lr~Arer~l~tVVVGd 134 (157)
.|+..++...|+.+.......+ |..-..+..+.+...++|.|++. +.+++ ...++. ...+..+|.++.
T Consensus 83 ~gi~~~a~~~g~~~~i~~~~~~--~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~~--~~~~iPvV~~d~ 152 (342)
T PRK09526 83 AAIKSRADQLGYSVVISMVERS--GVEACQAAVNELLAQRVSGVIINVPLEDADAEKIVA--DCADVPCLFLDV 152 (342)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC--hHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHHh--hcCCCCEEEEec
Confidence 5677888899999987632111 11112233344447899999996 43433 222221 235888888864
No 352
>COG2237 Predicted membrane protein [Function unknown]
Probab=55.73 E-value=25 Score=32.29 Aligned_cols=72 Identities=24% Similarity=0.129 Sum_probs=52.9
Q ss_pred CcHHHHHhhceEEE--EecCCC---ccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH----cCCeEEEEcC
Q 045172 64 GFADELKRAWFWVR--MVLVKP---QDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL----RWLKMVVVGD 134 (157)
Q Consensus 64 gla~eLrRAGv~V~--~V~dkp---qAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are----r~l~tVVVGd 134 (157)
-+-+|||.-|--|. .|+.-| -.+|..+.++.-.+++..+.|..++|||-.+=..++---+. ..++.|||--
T Consensus 55 kiydeLk~~geDveIA~vsG~~~vgv~sd~~l~~qld~vl~~~~pd~av~VsDGaeDe~ivPiI~Sr~~I~svkrVVVrQ 134 (364)
T COG2237 55 KIYDELKAKGEDVEIAVVSGDKDVGVESDLKLSEQLDEVLSELDPDDAVVVSDGAEDERIVPIIQSRVKIDSVKRVVVRQ 134 (364)
T ss_pred HHHHHHhccCCceEEEEEecCCCcchhhHHHHHHHHHHHHHcCCCcEEEEeccCcccchhhhhhhcccceeEEEEEEEec
Confidence 45689999995444 444444 49999999999999999999999999997664443333222 5677888754
Q ss_pred C
Q 045172 135 M 135 (157)
Q Consensus 135 ~ 135 (157)
+
T Consensus 135 s 135 (364)
T COG2237 135 S 135 (364)
T ss_pred C
Confidence 4
No 353
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=55.71 E-value=64 Score=25.72 Aligned_cols=78 Identities=6% Similarity=-0.021 Sum_probs=42.1
Q ss_pred CcHHHHHhh-ceEEEEecCCCccHHHHHHHHHHHHhhcc-CcceEEEEcCCcchHHHHHHHHHcCCe----EEEEcCCCc
Q 045172 64 GFADELKRA-WFWVRMVLVKPQDADVLLRNYMVAMVDKR-RFGCLVVVSDDSDFVEVFQEATLRWLK----MVVVGDMSD 137 (157)
Q Consensus 64 gla~eLrRA-Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r-~v~clvLVSDDsDF~~~lr~Arer~l~----tVVVGd~~~ 137 (157)
|+-..|+.+ |+-+..+...+...+.+ .+.+.+++... .++ .|+.++|.--.++++.+++.|+. .|.+++. +
T Consensus 151 gf~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-ai~~~nd~~A~g~l~al~~~G~~~dv~vvg~d~~-~ 227 (280)
T cd06303 151 TFIDCVHARNNWTLTSEFYTDATRQKA-YQATSDILSNNPDVD-FIYACSTDIALGASDALKELGREDDILINGWGGG-S 227 (280)
T ss_pred HHHHHHHhCCCceEEEeecCCCCHHHH-HHHHHHHHHhCCCCc-EEEECCcHHHHHHHHHHHHcCCCCCcEEEecCCC-H
Confidence 344455555 54433222222333333 34566666322 244 45566777777999999999974 5555554 4
Q ss_pred hHHHhhh
Q 045172 138 GALKRIA 144 (157)
Q Consensus 138 ~~L~r~A 144 (157)
.++....
T Consensus 228 ~~~~~~~ 234 (280)
T cd06303 228 AELDAIQ 234 (280)
T ss_pred HHHHHHH
Confidence 4445544
No 354
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=55.61 E-value=25 Score=33.73 Aligned_cols=72 Identities=11% Similarity=0.017 Sum_probs=43.2
Q ss_pred CCcHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH----------cCCeE
Q 045172 63 YGFADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL----------RWLKM 129 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are----------r~l~t 129 (157)
..|+..|+.+|+.|..++- .+...+...+..+.+.+ ..++++++ +++-+-...+++.+++ .+...
T Consensus 152 ~~L~~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l-~~~idav~-fTS~s~v~~f~~la~~~l~~~~~~~l~~~~i 229 (656)
T PRK06975 152 EWLAERLREAGAEVELVEAYRRVVPEPSIGAWERVHALL-SGAPHAWL-LTSSEAVRNLDELARAHLNPAEIDALKHAPL 229 (656)
T ss_pred HHHHHHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHH-hCCCcEEE-ECCHHHHHHHHHHHHhhcCHHHHHHHhCCeE
Confidence 3489999999999887631 11111222223344445 45788877 5556666666665432 35667
Q ss_pred EEEcCCC
Q 045172 130 VVVGDMS 136 (157)
Q Consensus 130 VVVGd~~ 136 (157)
|+||..+
T Consensus 230 vaIgprt 236 (656)
T PRK06975 230 VAPHARI 236 (656)
T ss_pred EEeCHHH
Confidence 8888764
No 355
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=55.56 E-value=60 Score=24.88 Aligned_cols=64 Identities=17% Similarity=0.009 Sum_probs=42.6
Q ss_pred HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc----hHHHHHHHHHcCC--eEEEEcCC
Q 045172 66 ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD----FVEVFQEATLRWL--KMVVVGDM 135 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD----F~~~lr~Arer~l--~tVVVGd~ 135 (157)
+..|+-+||-|-... .=+.++. ..+..-..+.+.+||-|-+.+ +..+++..+++|. -.|++|..
T Consensus 23 ~~~l~~~GfeVi~lg-~~~s~e~-----~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~ 92 (132)
T TIGR00640 23 ATAYADLGFDVDVGP-LFQTPEE-----IARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGV 92 (132)
T ss_pred HHHHHhCCcEEEECC-CCCCHHH-----HHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 567999999998743 2232332 233333679999999888864 5566777788876 35777854
No 356
>PRK11587 putative phosphatase; Provisional
Probab=55.02 E-value=42 Score=26.36 Aligned_cols=30 Identities=13% Similarity=0.034 Sum_probs=20.5
Q ss_pred hcCcccC-CCcHHHHHhhceEEEEecCCCcc
Q 045172 56 ILTPKVG-YGFADELKRAWFWVRMVLVKPQD 85 (157)
Q Consensus 56 ~l~pkvg-ygla~eLrRAGv~V~~V~dkpqA 85 (157)
-++|--| ..+-..|+..|+.+=.|+.++..
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~ 111 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVP 111 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCch
Confidence 3344434 45667788889988888888763
No 357
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=54.95 E-value=69 Score=24.58 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=13.4
Q ss_pred cHHHHHhhceEEEEecCCCc
Q 045172 65 FADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq 84 (157)
+=.+|+.+|+.+=.++.+|.
T Consensus 34 ~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 34 ALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred HHHHHHHCCCEEEEEeCCcc
Confidence 44566777777777777764
No 358
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=54.64 E-value=82 Score=23.01 Aligned_cols=72 Identities=21% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCcHHHHHh----hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC-eEEEEcCCC
Q 045172 63 YGFADELKR----AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL-KMVVVGDMS 136 (157)
Q Consensus 63 ygla~eLrR----AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l-~tVVVGd~~ 136 (157)
.||+..|.+ .|+-+..-.++|...+..- ...++++.-+-..+++..+..+...+++.+++.|+ ...+||-.+
T Consensus 67 GGL~~~l~em~~~s~~g~~i~~~~~p~~~~~~--~~~~~l~~~~~g~~l~~v~~~~~~~~~~~~~~~g~~~~~~IG~V~ 143 (153)
T PF02769_consen 67 GGLAGALAEMAEASGVGAEIDLDKIPLSDELQ--SPLEMLFSESEGRLLVAVPPEDAEEFLAALKKAGIPNATVIGEVT 143 (153)
T ss_dssp THHHHHHHHHHHCTTEEEEEEGGGSHHHHHHH--HHHHHHHHSSSTEEEEEEEGGGHHHHHHHHHHTTCTTEEEEEEEE
T ss_pred chHHHHHHHHHHhCCcceEEccccchhhhhhh--hhhhhhccCCCCCEEEEEcHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 388775543 3577777667655444442 34555565666666666666666999999999999 799999763
No 359
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=54.54 E-value=17 Score=29.27 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=47.6
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHH---HHHH-cCCe
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQ---EATL-RWLK 128 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr---~Are-r~l~ 128 (157)
+.|.-. ..|+..|+..|+.|-.+|- .|.. +. ..+.+ ....||||.+|-+.--. +.. ..+. .+.+
T Consensus 6 TRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~-----~~~~l-~~~~d~iifTS~naV~~-~~~~~~~~~~~~~~~ 77 (240)
T PRK09189 6 TRPEPAAERTAARLRAMGHEPVLLPLSRPVHDV-AA-----AFTAL-SEPHGAIAVTSAEAVRH-LAALGERLLPHLALP 77 (240)
T ss_pred ECCCCchHHHHHHHHHCCCceEEecccccccCh-hh-----hhhhh-cCCcCEEEEECHHHHHH-HHhcchhhHHhcCCe
Confidence 344444 6788999999999888742 2221 11 12233 34579999999764211 111 1222 5788
Q ss_pred EEEEcCCCchHHHh
Q 045172 129 MVVVGDMSDGALKR 142 (157)
Q Consensus 129 tVVVGd~~~~~L~r 142 (157)
.+.||+.|..+|.+
T Consensus 78 ~~aVG~~Ta~~l~~ 91 (240)
T PRK09189 78 LFAVGEATAEAARE 91 (240)
T ss_pred EEEEcHHHHHHHHH
Confidence 99999998666664
No 360
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=54.41 E-value=1.9e+02 Score=27.24 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=62.3
Q ss_pred hhhhhhhHHHHHHHHhhcC--cccC-------CCcHHHHHhhceEEEEe-----cCCCccHHHHHHHHHHHHhhccCcce
Q 045172 40 GNYSIKMEKNKMAASAILT--PKVG-------YGFADELKRAWFWVRMV-----LVKPQDADVLLRNYMVAMVDKRRFGC 105 (157)
Q Consensus 40 ~~~~~k~~kY~~Aar~~l~--pkvg-------ygla~eLrRAGv~V~~V-----~dkpqAAD~AL~~~~~~~~~~r~v~c 105 (157)
++|..+++...+..++.+. |.-+ ..+.--+++.|+.+..+ ...|.++|++ .+.+.+.+.+|.|
T Consensus 347 ~ay~~eL~~Ld~~~~~~la~ip~k~r~vvt~H~af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~---~Li~~IK~~~V~~ 423 (479)
T TIGR03772 347 SAYIHRLERLDTYVRRTIATIPPSRRHLITTHDAYSYLGQAYGLNIAGFVTPNPAVEPSLADRR---RLTRTIENLKVPA 423 (479)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccCCEEEEECCcHHHHHHHCCCeEEeeeccCCCCCCCHHHHH---HHHHHHHHcCCCE
Confidence 3444555555555555554 3222 34555566777766543 3456777765 4445556789999
Q ss_pred EEEEcCCc-chHHHHHHHHHcCCeEEEE-cCCCchHHHhhhhcccchh
Q 045172 106 LVVVSDDS-DFVEVFQEATLRWLKMVVV-GDMSDGALKRIANAFFSWS 151 (157)
Q Consensus 106 lvLVSDDs-DF~~~lr~Arer~l~tVVV-Gd~~~~~L~r~AD~~fsW~ 151 (157)
|+.=+.-+ .-..+-..|++.|++.+.+ ||.. ...++-|++|-
T Consensus 424 IF~Epq~~~~~~~l~~IA~e~Gv~V~~l~~d~l----~~~~~tY~~~M 467 (479)
T TIGR03772 424 VFLEPNLAARSTTLNEIADELGVRVCAIYGDTF----DDDVTNYVDLM 467 (479)
T ss_pred EEEeCCCCCchHHHHHHHHHcCCcEEeeecCCC----CCccccHHHHH
Confidence 99866544 3234667889999998766 5653 22345555553
No 361
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=54.35 E-value=85 Score=23.06 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=30.4
Q ss_pred CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEE
Q 045172 81 VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 81 dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVV 132 (157)
.||+ -....++.+.+ ....+..+.|. |+. .+ ++-|++.|++||.|
T Consensus 139 ~KP~---~~~~~~~~~~~-~~~~~~~~~vg-D~~-~d-i~aA~~~G~~~i~v 183 (183)
T TIGR01509 139 GKPD---PDIYLLALKKL-GLKPEECLFVD-DSP-AG-IEAAKAAGMHTVLV 183 (183)
T ss_pred CCCC---HHHHHHHHHHc-CCCcceEEEEc-CCH-HH-HHHHHHcCCEEEeC
Confidence 4665 55566677666 45556666665 444 34 88899999999875
No 362
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=54.27 E-value=31 Score=28.82 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=43.4
Q ss_pred cHHHHHhhceE--EEEe-cCCCccH-H-HHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC----eEEEEcCC
Q 045172 65 FADELKRAWFW--VRMV-LVKPQDA-D-VLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL----KMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~--V~~V-~dkpqAA-D-~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l----~tVVVGd~ 135 (157)
+...|+..|+- +..+ .-.|... | ..+...+. +.+.+.++|.++..+-..+++.|++.|+ -+.+++|+
T Consensus 156 l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~----~~~~~vivl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~ 231 (362)
T cd06367 156 VETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLK----KLESRVILLYCSKEEAERIFEAAASLGLTGPGYVWIVGEL 231 (362)
T ss_pred HHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHH----hcCCcEEEEeCCHHHHHHHHHHHHHcCCCCCCcEEEECcc
Confidence 55667777765 2221 1122222 2 22333333 4567899999999999999999999998 46777776
Q ss_pred C
Q 045172 136 S 136 (157)
Q Consensus 136 ~ 136 (157)
.
T Consensus 232 ~ 232 (362)
T cd06367 232 A 232 (362)
T ss_pred c
Confidence 3
No 363
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=54.16 E-value=85 Score=25.14 Aligned_cols=73 Identities=8% Similarity=-0.065 Sum_probs=50.2
Q ss_pred CCcHHHHHhhceEEEEecCCCc------------cHHHHHHHHHHHHhhccCcceEEEEcCCcc-------hHHHHHHHH
Q 045172 63 YGFADELKRAWFWVRMVLVKPQ------------DADVLLRNYMVAMVDKRRFGCLVVVSDDSD-------FVEVFQEAT 123 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpq------------AAD~AL~~~~~~~~~~r~v~clvLVSDDsD-------F~~~lr~Ar 123 (157)
-.....+..+|+-.-.++..+. ..++.....+.+.+-..|+...+-+++-+. +.++++.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALE 156 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 3445667777765555544333 114555666666666888877776654444 788999999
Q ss_pred HcCCeEEEEcCC
Q 045172 124 LRWLKMVVVGDM 135 (157)
Q Consensus 124 er~l~tVVVGd~ 135 (157)
+.|+..|.+-|.
T Consensus 157 ~~g~~~i~l~Dt 168 (265)
T cd03174 157 EAGADEISLKDT 168 (265)
T ss_pred HcCCCEEEechh
Confidence 999999999887
No 364
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=54.15 E-value=53 Score=29.69 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=45.9
Q ss_pred CcccCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEE---------cCCcchHHHHHHHHHcCCe
Q 045172 58 TPKVGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVV---------SDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 58 ~pkvgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLV---------SDDsDF~~~lr~Arer~l~ 128 (157)
-|..-+-+..+++.+||.|++ .-.|+.+ .+.+..++ ..|++.|++- |...+..++.+..++.++.
T Consensus 117 ~p~l~~~ii~~vr~a~Vtvki-Rl~~~~~----~e~a~~l~-eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IP 190 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAV-RVSPQNA----REIAPIVV-KAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVP 190 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEE-ecCCcCH----HHHHHHHH-HCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCC
Confidence 344445566788999988887 3355421 12222333 6899999973 5567788888888887776
Q ss_pred EEEEcCC
Q 045172 129 MVVVGDM 135 (157)
Q Consensus 129 tVVVGd~ 135 (157)
.++ |+.
T Consensus 191 VI~-G~V 196 (369)
T TIGR01304 191 VIA-GGV 196 (369)
T ss_pred EEE-eCC
Confidence 553 666
No 365
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=54.13 E-value=47 Score=26.15 Aligned_cols=47 Identities=13% Similarity=0.022 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhcc-CcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 86 ADVLLRNYMVAMVDKR-RFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 86 AD~AL~~~~~~~~~~r-~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
++.-|..|.++.+... +++.+++++++.. +...+.+.|++++...+.
T Consensus 25 ~GkPli~~~i~~l~~~~~~~~ivv~t~~~~---i~~~~~~~~~~v~~~~~~ 72 (238)
T PRK13368 25 LGKPMIQHVYERAAQAAGVEEVYVATDDQR---IEDAVEAFGGKVVMTSDD 72 (238)
T ss_pred CCcCHHHHHHHHHHhcCCCCeEEEECChHH---HHHHHHHcCCeEEecCcc
Confidence 3455788888888765 7899999998744 444455568877655443
No 366
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=54.00 E-value=16 Score=30.95 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.5
Q ss_pred CCcHHHHHhhceEEEEecCC
Q 045172 63 YGFADELKRAWFWVRMVLVK 82 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dk 82 (157)
||||-+..|.|+.|+...+.
T Consensus 57 ~GLAlAA~rrG~~vev~~~~ 76 (207)
T PF11814_consen 57 FGLALAAARRGFKVEVWVST 76 (207)
T ss_pred HHHHHHHHHcCCceEEEECC
Confidence 99999999999999987443
No 367
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=53.92 E-value=27 Score=27.98 Aligned_cols=41 Identities=32% Similarity=0.356 Sum_probs=29.4
Q ss_pred ceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCC--CchHHHhhh
Q 045172 104 GCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDM--SDGALKRIA 144 (157)
Q Consensus 104 ~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~--~~~~L~r~A 144 (157)
..+||+||- .+-....+.+++.|++.++||-+ ....|...|
T Consensus 110 kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 110 RVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred eEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCcCCHHHHHHHh
Confidence 457889886 34667788899999997777654 335666665
No 368
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=53.87 E-value=36 Score=27.98 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=51.3
Q ss_pred hcCcccCCC------cHHHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 56 ILTPKVGYG------FADELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 56 ~l~pkvgyg------la~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
++.+...|| +...|++.|+.|-.... .|...|.. ..+..+. ..+.|.|++.....+...+++.+++.|+.
T Consensus 140 ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~--~~v~~l~-~~~~d~v~~~~~~~~~~~~~~~~~~~g~~ 216 (340)
T cd06349 140 ILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFR--PTITRLR-DANPDAIILISYYNDGAPIARQARAVGLD 216 (340)
T ss_pred EEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHH--HHHHHHH-hcCCCEEEEccccchHHHHHHHHHHcCCC
Confidence 444444454 34567777887764322 23344443 3334444 67899999999999999999999999998
Q ss_pred EEEEcCC
Q 045172 129 MVVVGDM 135 (157)
Q Consensus 129 tVVVGd~ 135 (157)
.-++|-+
T Consensus 217 ~~~~~~~ 223 (340)
T cd06349 217 IPVVASS 223 (340)
T ss_pred CcEEccC
Confidence 6666643
No 369
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=53.82 E-value=82 Score=25.56 Aligned_cols=70 Identities=11% Similarity=-0.002 Sum_probs=37.1
Q ss_pred CcHHHHHhhce---EEEEecCCCccHHHHHHHHHHHHhhcc-CcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcCC
Q 045172 64 GFADELKRAWF---WVRMVLVKPQDADVLLRNYMVAMVDKR-RFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGDM 135 (157)
Q Consensus 64 gla~eLrRAGv---~V~~V~dkpqAAD~AL~~~~~~~~~~r-~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd~ 135 (157)
|.-..|+++|+ .+..+...+...+.+ ...+.+++... .++ .+++++|.--..+++.++++|+ ..-|||-.
T Consensus 144 Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-ai~~~~D~~A~g~~~al~~~g~~~dv~vvG~D 219 (298)
T cd06302 144 AAKAYQKEKYYPMLELVDRQYGDDDADKS-YQTAQELLKAYPDLK-GIIGPTSVGIPGAARAVEEAGLKGKVAVTGLG 219 (298)
T ss_pred HHHHHHhhcCCCCeEEeCcccCCCCHHHH-HHHHHHHHHhCCCce-EEEECCCcchhHHHHHHHhcCCCCCEEEEEeC
Confidence 44456666662 221122222223333 23455555322 344 4555667777789999999998 34455543
No 370
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.82 E-value=73 Score=24.51 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=37.8
Q ss_pred cHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEc----CCcchHHHHHHHHHcCCe--EEEEcCC
Q 045172 65 FADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVS----DDSDFVEVFQEATLRWLK--MVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS----DDsDF~~~lr~Arer~l~--tVVVGd~ 135 (157)
++..|+.+||.|--. .+.|. ..+.+.+...+.+.+++=| ....+-+++++.++.+.. .|+||..
T Consensus 23 v~~~lr~~G~eVi~LG~~vp~-------e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~ 93 (137)
T PRK02261 23 LDRALTEAGFEVINLGVMTSQ-------EEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGN 93 (137)
T ss_pred HHHHHHHCCCEEEECCCCCCH-------HHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECC
Confidence 456789999999887 34554 2344444455666655532 234666777777776441 2444443
No 371
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=53.76 E-value=43 Score=25.65 Aligned_cols=66 Identities=17% Similarity=0.204 Sum_probs=35.7
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhh-ccCcceEEEEcCCc-----c---hHHHHHHHHHcCCeEEEEcCC
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVD-KRRFGCLVVVSDDS-----D---FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~-~r~v~clvLVSDDs-----D---F~~~lr~Arer~l~tVVVGd~ 135 (157)
+-..|+..|+.+-.++..+.... ..++.+. ..-++. ++.|++. + |..+++..--..-++++|||+
T Consensus 113 ~l~~L~~~g~~~~i~Sn~~~~~~-----~~l~~~~l~~~fd~-i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~ 186 (203)
T TIGR02252 113 LLKDLRERGLILGVISNFDSRLR-----GLLEALGLLEYFDF-VVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDS 186 (203)
T ss_pred HHHHHHHCCCEEEEEeCCchhHH-----HHHHHCCcHHhcce-EEeecccCCCCCCHHHHHHHHHHcCCChhHEEEECCC
Confidence 44577888999999998876321 1222210 112343 4455543 2 333333332223468999998
Q ss_pred C
Q 045172 136 S 136 (157)
Q Consensus 136 ~ 136 (157)
.
T Consensus 187 ~ 187 (203)
T TIGR02252 187 L 187 (203)
T ss_pred c
Confidence 3
No 372
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=53.70 E-value=32 Score=26.66 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHhhc-------cCcc-eEEEEcCCc---chHHHHHHHHHcCCeEEEEcCC
Q 045172 85 DADVLLRNYMVAMVDK-------RRFG-CLVVVSDDS---DFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 85 AAD~AL~~~~~~~~~~-------r~v~-clvLVSDDs---DF~~~lr~Arer~l~tVVVGd~ 135 (157)
....||..=...+... .++. .+||+||-. |.....+.+|..|+..++||.+
T Consensus 81 ~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~~ 142 (165)
T cd01481 81 NTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALKRAGIVPFAIGAR 142 (165)
T ss_pred cHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHHHCCcEEEEEeCC
Confidence 4566665433333321 2343 678888753 4666678889999999999987
No 373
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=53.41 E-value=73 Score=30.20 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=47.6
Q ss_pred HHHHhhceEEEEecCCCcc-----HHHHHHHHHHHHhhccCcceEEEEcCCcch-----HHHHHHHHHc-C----C---e
Q 045172 67 DELKRAWFWVRMVLVKPQD-----ADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-----VEVFQEATLR-W----L---K 128 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqA-----AD~AL~~~~~~~~~~r~v~clvLVSDDsDF-----~~~lr~Arer-~----l---~ 128 (157)
.+|+.+|+.+-.|+.++.- .-..++..|..++...|+.--+.++.+.+. .+++..+-+. + + .
T Consensus 207 ~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~ 286 (526)
T TIGR01663 207 KELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDD 286 (526)
T ss_pred HHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHH
Confidence 5678899999999998882 122345566666766677655666655443 4677776553 2 3 6
Q ss_pred EEEEcCCC
Q 045172 129 MVVVGDMS 136 (157)
Q Consensus 129 tVVVGd~~ 136 (157)
++.|||..
T Consensus 287 S~~VGDaa 294 (526)
T TIGR01663 287 CFFVGDAA 294 (526)
T ss_pred eEEeCCcc
Confidence 89999984
No 374
>PRK10490 sensor protein KdpD; Provisional
Probab=53.25 E-value=47 Score=32.77 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 89 LLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 89 AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.|.+++ +...+.|.+...+- .+.--..+++.|++.|++.+|+|-+.
T Consensus 301 ~l~~~~-~lA~~lGa~~~~~~-~~dva~~i~~~A~~~~vt~IViG~s~ 346 (895)
T PRK10490 301 AILSAL-RLAQELGAETATLS-DPAEEKAVLRYAREHNLGKIIIGRRA 346 (895)
T ss_pred HHHHHH-HHHHHcCCEEEEEe-CCCHHHHHHHHHHHhCCCEEEECCCC
Confidence 455555 46667899966554 44456889999999999999999983
No 375
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=53.22 E-value=23 Score=29.06 Aligned_cols=63 Identities=14% Similarity=0.056 Sum_probs=41.8
Q ss_pred CcHHHHHhhceEEEEec-CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 64 GFADELKRAWFWVRMVL-VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~-dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
++-..+++.|+.+.... ..|...|.. ..+.+++ ..+.|.|++.++-.+...+++.+++.|++.
T Consensus 152 ~~~~~~~~~G~~v~~~~~~~~~~~d~~--~~~~~i~-~~~pdaV~~~~~~~~a~~~~~~~~~~G~~~ 215 (341)
T cd06341 152 LLARSLAAAGVSVAGIVVITATAPDPT--PQAQQAA-AAGADAIITVLDAAVCASVLKAVRAAGLTP 215 (341)
T ss_pred HHHHHHHHcCCccccccccCCCCCCHH--HHHHHHH-hcCCCEEEEecChHHHHHHHHHHHHcCCCC
Confidence 34556777787654432 233345542 2333444 468899988887779999999999999864
No 376
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=53.16 E-value=22 Score=25.86 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=30.1
Q ss_pred ceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 104 GCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 104 ~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.++|-.++-.|...+++.|++.+++..+.|.++
T Consensus 2 ~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~ 34 (139)
T PF01565_consen 2 AAVVRPKSVEEVQAIVKFANENGVPVRVRGGGH 34 (139)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTSEEEEESSST
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCC
Confidence 467888999999999999999999999999874
No 377
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=53.13 E-value=43 Score=29.26 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHhhccCcceEEE-----------------EcCCcchHHHHHHHHHcCCeEEEEcCCCc----hHHHhh
Q 045172 85 DADVLLRNYMVAMVDKRRFGCLVV-----------------VSDDSDFVEVFQEATLRWLKMVVVGDMSD----GALKRI 143 (157)
Q Consensus 85 AAD~AL~~~~~~~~~~r~v~clvL-----------------VSDDsDF~~~lr~Arer~l~tVVVGd~~~----~~L~r~ 143 (157)
-++-.-.+..+|.....|++-+++ +.++.|..+|++-|+++||+..+...+.. ..+.+.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~ 107 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ 107 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH
Confidence 345666778888888999998877 44688999999999999999999999842 115555
Q ss_pred hhcccch
Q 045172 144 ANAFFSW 150 (157)
Q Consensus 144 AD~~fsW 150 (157)
.|.+|+|
T Consensus 108 ~~~~f~~ 114 (273)
T PF10566_consen 108 LDEAFKL 114 (273)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666644
No 378
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=53.07 E-value=22 Score=29.10 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=47.1
Q ss_pred hhcCcccCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcc----hHHHHHHHHHc--CCe
Q 045172 55 AILTPKVGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD----FVEVFQEATLR--WLK 128 (157)
Q Consensus 55 ~~l~pkvgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD----F~~~lr~Arer--~l~ 128 (157)
-++.|-+.||...+... |- =||+-.|+ .=.++..++.+++...|+.-||+|+..-. ...+++.++.+ ++.
T Consensus 56 ~lv~P~i~yG~s~~h~~--fp-GTisl~~~-t~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~~l~~~~~~~~ 131 (237)
T PF02633_consen 56 ALVLPPIPYGCSPHHMG--FP-GTISLSPE-TLIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAARELRQEYPGVK 131 (237)
T ss_dssp EEE---B--BB-GCCTT--ST-T-BBB-HH-HHHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHHHHHHHGCC-E
T ss_pred EEEeCCCccccCcccCC--CC-CeEEeCHH-HHHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHHHHHhhCCCcE
Confidence 78999999999988774 22 23444443 34678888888888999999999999864 34455566655 888
Q ss_pred EEEEcCC
Q 045172 129 MVVVGDM 135 (157)
Q Consensus 129 tVVVGd~ 135 (157)
.+++...
T Consensus 132 v~~~~~~ 138 (237)
T PF02633_consen 132 VFVINWW 138 (237)
T ss_dssp EEEEEGG
T ss_pred EEEeech
Confidence 8877664
No 379
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=53.06 E-value=23 Score=26.41 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=38.5
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcce---EEEEcCCcc---------------hHHHHHHH------
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGC---LVVVSDDSD---------------FVEVFQEA------ 122 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~c---lvLVSDDsD---------------F~~~lr~A------ 122 (157)
.+|+.+|+.|-.||..|. -+.+++.+ ..|++. ++--..+.+ =...++..
T Consensus 99 ~~~~~~~~~v~IvS~~~~----~~i~~~~~---~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 99 RELKDNGIKVVIVSGSPD----EIIEPIAE---RLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp HHHHHTTSEEEEEEEEEH----HHHHHHHH---HTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCCcH----HHHHHHHH---HcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 445789999999999987 33344443 346653 332221111 24466666
Q ss_pred HHcCCeEEEEcCC
Q 045172 123 TLRWLKMVVVGDM 135 (157)
Q Consensus 123 rer~l~tVVVGd~ 135 (157)
....-.++.|||+
T Consensus 172 ~~~~~~~~~iGDs 184 (192)
T PF12710_consen 172 DIDPDRVIAIGDS 184 (192)
T ss_dssp THTCCEEEEEESS
T ss_pred CCCCCeEEEEECC
Confidence 3457889999999
No 380
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=53.04 E-value=22 Score=34.13 Aligned_cols=46 Identities=17% Similarity=0.068 Sum_probs=38.3
Q ss_pred cceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhccc
Q 045172 103 FGCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFF 148 (157)
Q Consensus 103 v~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~f 148 (157)
-+++++||- ..|=...++.|+++|.+|+.|-...+..|.+.||.-+
T Consensus 411 ~~lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i 459 (680)
T PLN02981 411 EDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGV 459 (680)
T ss_pred CCeEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeE
Confidence 478888885 4477788999999999999998776789999999755
No 381
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=52.84 E-value=62 Score=25.30 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=40.8
Q ss_pred HHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEE----cCCcchHHHHHHHHHcCC--eEEEEcCC
Q 045172 66 ADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVV----SDDSDFVEVFQEATLRWL--KMVVVGDM 135 (157)
Q Consensus 66 a~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLV----SDDsDF~~~lr~Arer~l--~tVVVGd~ 135 (157)
+..|+.+||.|--. .+.|. +.+.+.+-..+++.+++= +.-..|.++.++.+++|+ ..|+||..
T Consensus 22 ~~~l~~~GfeVi~LG~~v~~-------e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 22 DHAFTNAGFNVVNLGVLSPQ-------EEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred HHHHHHCCCEEEECCCCCCH-------HHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 67899999999875 33333 233333335667766552 234468899999999987 34556763
No 382
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=52.75 E-value=13 Score=33.03 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=30.3
Q ss_pred cceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 103 FGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 103 v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
+++++.++|-.++..+++.+++.++...|+|.+|
T Consensus 21 A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GS 54 (334)
T PRK00046 21 ARHLVEAESEEQLLEALADARAAGLPVLVLGGGS 54 (334)
T ss_pred EeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceE
Confidence 3889999999999999999999999999999874
No 383
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=52.63 E-value=91 Score=27.14 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=46.1
Q ss_pred cHHHHHhhc-eEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEE-cC------CcchHHHHHHHHHcCC---e-EEEE
Q 045172 65 FADELKRAW-FWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVV-SD------DSDFVEVFQEATLRWL---K-MVVV 132 (157)
Q Consensus 65 la~eLrRAG-v~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLV-SD------DsDF~~~lr~Arer~l---~-tVVV 132 (157)
+..+|+..| =.+-.|.| +...+ .+...+.+.+...|+++.+.+ ++ .+....+++.+++.|. . .|.|
T Consensus 22 l~~~l~~~~~~~~livtd-~~~~~-~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIav 99 (358)
T PRK00002 22 LGELLAPLKGKKVAIVTD-ETVAP-LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIAL 99 (358)
T ss_pred HHHHHHhcCCCeEEEEEC-CchHH-HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 344555543 23445565 44444 488888888877888877654 32 2445666777778776 3 4457
Q ss_pred cCCCchHHHhh
Q 045172 133 GDMSDGALKRI 143 (157)
Q Consensus 133 Gd~~~~~L~r~ 143 (157)
|.++-..+...
T Consensus 100 GGGsv~D~aK~ 110 (358)
T PRK00002 100 GGGVIGDLAGF 110 (358)
T ss_pred cCcHHHHHHHH
Confidence 87754444443
No 384
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=52.61 E-value=52 Score=30.07 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=39.9
Q ss_pred cccC-CCcHHHHHhhc-eEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEcCCcchH---HHHHHHHHc--CCeEE
Q 045172 59 PKVG-YGFADELKRAW-FWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV---EVFQEATLR--WLKMV 130 (157)
Q Consensus 59 pkvg-ygla~eLrRAG-v~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~---~~lr~Arer--~l~tV 130 (157)
|-.| -=||+.|+.+| ..|+.+-..-. ..+ .++.+.+...+-|.+++-+--+.+. .+++.+|++ ++ +|
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~----~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~-~i 95 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTD----EKLVERLRAHCPDLVLITAITPAIYIACETLKFARERLPNA-II 95 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCH----HHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHHCCCC-EE
Confidence 4344 34677899999 57998732211 122 2233344345667666644444444 456667776 54 45
Q ss_pred EEcCC
Q 045172 131 VVGDM 135 (157)
Q Consensus 131 VVGd~ 135 (157)
|+|..
T Consensus 96 V~GG~ 100 (497)
T TIGR02026 96 VLGGI 100 (497)
T ss_pred EEcCC
Confidence 56655
No 385
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=52.60 E-value=24 Score=29.26 Aligned_cols=109 Identities=15% Similarity=0.025 Sum_probs=49.9
Q ss_pred hhhhh-hhHHHHHHHHhhcCcccCCCc-----HHHHHhhceEEEE-ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC
Q 045172 40 GNYSI-KMEKNKMAASAILTPKVGYGF-----ADELKRAWFWVRM-VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD 112 (157)
Q Consensus 40 ~~~~~-k~~kY~~Aar~~l~pkvgygl-----a~eLrRAGv~V~~-V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD 112 (157)
.++.. .+.-.+.|||=+.-.-+|-|- ..||+-.--..-. .+.=|+++.+.--.+-.+.+ -..|-++|.|..
T Consensus 14 ~rI~ekee~~iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~l--t~~DRVllfs~~ 91 (172)
T PF10740_consen 14 KRISEKEEESIEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDEL--TETDRVLLFSPF 91 (172)
T ss_dssp HHH-HCCHHHHHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT----------TT-EEEEEES-
T ss_pred HHHhhhhHhhHHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccc--cccceEEEEeCC
Confidence 34434 344788899988777777442 1222211000000 01223333332111112223 256889999887
Q ss_pred cch---HHHHHHHHHcCCeEEEEcC-C-CchHHHhhhhcccch
Q 045172 113 SDF---VEVFQEATLRWLKMVVVGD-M-SDGALKRIANAFFSW 150 (157)
Q Consensus 113 sDF---~~~lr~Arer~l~tVVVGd-~-~~~~L~r~AD~~fsW 150 (157)
++= ..+.+.+.+.|...|+|.. . ....|-.+||++++-
T Consensus 92 ~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl 134 (172)
T PF10740_consen 92 STDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDL 134 (172)
T ss_dssp S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE-
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeec
Confidence 766 6667777789999999992 2 336788889988853
No 386
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=52.59 E-value=14 Score=24.90 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.9
Q ss_pred ceEEEEcCCcchHHHHHHHHHcC
Q 045172 104 GCLVVVSDDSDFVEVFQEATLRW 126 (157)
Q Consensus 104 ~clvLVSDDsDF~~~lr~Arer~ 126 (157)
+=+|.+|+|+||..++..+++.+
T Consensus 51 gD~V~i~sd~Dl~~a~~~~~~~~ 73 (84)
T PF00564_consen 51 GDLVTISSDEDLQEAIEQAKESG 73 (84)
T ss_dssp SSEEEESSHHHHHHHHHHHHHCT
T ss_pred CCEEEeCCHHHHHHHHHHHHhcC
Confidence 34799999999999999999853
No 387
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=52.57 E-value=15 Score=30.10 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=30.8
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC-CchHHHhhhh
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM-SDGALKRIAN 145 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD 145 (157)
.++.=+|+.|.-|... ||--+|..+..-+ +.+-..++.|-|--+=.-+| |++.+..++||++ -++.+-..||
T Consensus 61 ~lae~~gi~~~rv~a~---a~~e~K~~ii~eL-kk~~~k~vmVGnGaND~laL---r~ADlGI~tiq~e~v~~r~l~~AD 133 (152)
T COG4087 61 QLAEFVGIPVERVFAG---ADPEMKAKIIREL-KKRYEKVVMVGNGANDILAL---READLGICTIQQEGVPERLLLTAD 133 (152)
T ss_pred HHHHHcCCceeeeecc---cCHHHHHHHHHHh-cCCCcEEEEecCCcchHHHh---hhcccceEEeccCCcchHHHhhch
Confidence 3444455555554332 3344555555555 22333334444433322222 3344555555533 2333334444
Q ss_pred c
Q 045172 146 A 146 (157)
Q Consensus 146 ~ 146 (157)
+
T Consensus 134 v 134 (152)
T COG4087 134 V 134 (152)
T ss_pred h
Confidence 3
No 388
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=52.48 E-value=53 Score=29.44 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=42.1
Q ss_pred hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHH---HHHHHHHcCCeEEEEcCCCchHHH
Q 045172 72 AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVE---VFQEATLRWLKMVVVGDMSDGALK 141 (157)
Q Consensus 72 AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~---~lr~Arer~l~tVVVGd~~~~~L~ 141 (157)
|-..|..|| -|.|||.+ ++.+ ..+++++|++|+.----| +.+.|+++| +.+||-.+|+.+.
T Consensus 66 a~~svI~Vp-~~~aadai-----~EAi-da~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~ 129 (293)
T COG0074 66 ANASVIFVP-PPFAADAI-----LEAI-DAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIIT 129 (293)
T ss_pred CCEEEEecC-cHHHHHHH-----HHHH-hCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCc
Confidence 444444443 35688875 5778 488999999999865555 555666677 7888877766543
No 389
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=52.26 E-value=27 Score=32.03 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=34.4
Q ss_pred cCcceEEEEcCCcc-------hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSD-------FVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsD-------F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...++|++++.|.- +..-+..|+++|.+.|||.-. .......||.|++
T Consensus 161 ~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr-~s~ta~~AD~~l~ 215 (523)
T cd02757 161 ANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPR-LSNTAAKADEWLP 215 (523)
T ss_pred hcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCC-CChhhHhcCEeeC
Confidence 45699999996642 223455678899999999554 3455677999984
No 390
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=52.26 E-value=79 Score=28.59 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=60.5
Q ss_pred cCcccCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEE
Q 045172 57 LTPKVGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 57 l~pkvgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVV 132 (157)
+.|--.+...+-+.+.|...-+ +..|.-.....+..+.+.+-+.|+|+||.+--|--++....++.+-++.+|.|
T Consensus 50 i~~l~~~~v~~~~~~GGT~lgs-sR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 50 IKPLTREDVDDLINRGGTFLGS-ARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred ceeccccchhHHHhcCCeEEee-CCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 4454556667778899999888 66666555666678888888999999999999999999999998888777765
No 391
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=52.18 E-value=99 Score=26.60 Aligned_cols=77 Identities=9% Similarity=-0.001 Sum_probs=49.6
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcce-EEEEcCCcchH---HHHHHHHHcCCe-EEEEcCCCchH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGC-LVVVSDDSDFV---EVFQEATLRWLK-MVVVGDMSDGA 139 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~c-lvLVSDDsDF~---~~lr~Arer~l~-tVVVGd~~~~~ 139 (157)
|..+|++.|=.+-.|.|+-.. + .+...+.+.+...+++. +..+..++... .+++.+++.+.. .|.||.++...
T Consensus 14 l~~~~~~~~~r~livt~~~~~-~-~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD 91 (351)
T cd08170 14 LGEYLARLGKRALIIADEFVL-D-LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLD 91 (351)
T ss_pred HHHHHHHhCCeEEEEECHHHH-H-HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhH
Confidence 455666666566667765443 3 67888888887777875 45576777666 455566665554 45688876544
Q ss_pred HHhh
Q 045172 140 LKRI 143 (157)
Q Consensus 140 L~r~ 143 (157)
....
T Consensus 92 ~aK~ 95 (351)
T cd08170 92 TAKA 95 (351)
T ss_pred HHHH
Confidence 4443
No 392
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.18 E-value=36 Score=22.77 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=33.8
Q ss_pred CCcHHHHHhhceEEEEecCCCc---cHHHHHHHHHHHHhhccCcc
Q 045172 63 YGFADELKRAWFWVRMVLVKPQ---DADVLLRNYMVAMVDKRRFG 104 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpq---AAD~AL~~~~~~~~~~r~v~ 104 (157)
-.+|.+|.+.|..|.++...|. ..|..+...+.+.|.++||+
T Consensus 12 ~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~ 56 (80)
T PF00070_consen 12 IELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVE 56 (80)
T ss_dssp HHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCE
Confidence 4578999999999999866655 56888888888888777774
No 393
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=52.13 E-value=40 Score=28.42 Aligned_cols=82 Identities=12% Similarity=0.037 Sum_probs=48.1
Q ss_pred hhcCcccCC------CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhh-ccCcceEEEEc-CCcc---hHHHHHHHH
Q 045172 55 AILTPKVGY------GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVD-KRRFGCLVVVS-DDSD---FVEVFQEAT 123 (157)
Q Consensus 55 ~~l~pkvgy------gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~-~r~v~clvLVS-DDsD---F~~~lr~Ar 123 (157)
|+.+|+-.. .-+.+|+..|+-.-.|++.|.+....---.+...+. ..|++.++=+| -|.+ +...|..+.
T Consensus 4 E~~PP~~~~~~~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~ 83 (272)
T TIGR00676 4 EFFPPKTDEGEENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYR 83 (272)
T ss_pred EEECcCCchhHHHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHH
Confidence 455666543 346778888877777788887533322223333332 34777666444 3333 666677778
Q ss_pred HcCCeEE--EEcCCC
Q 045172 124 LRWLKMV--VVGDMS 136 (157)
Q Consensus 124 er~l~tV--VVGd~~ 136 (157)
+.|++.| +-||..
T Consensus 84 ~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 84 ELGIRHILALRGDPP 98 (272)
T ss_pred HCCCCEEEEeCCCCC
Confidence 8888844 457763
No 394
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=51.99 E-value=43 Score=33.80 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.5
Q ss_pred cceEEEEcCCcch--HHHHHHHHHcCCe--EEEEcCCCchHHHhhhhc
Q 045172 103 FGCLVVVSDDSDF--VEVFQEATLRWLK--MVVVGDMSDGALKRIANA 146 (157)
Q Consensus 103 v~clvLVSDDsDF--~~~lr~Arer~l~--tVVVGd~~~~~L~r~AD~ 146 (157)
...+||+||-.|- ..+++.++++|++ ||.+|...+..|...|+.
T Consensus 405 ~~~IILLTDGedn~~~~~l~~lk~~gVtI~TIg~G~dad~~L~~IA~~ 452 (863)
T TIGR00868 405 GSEIVLLTDGEDNTISSCFEEVKQSGAIIHTIALGPSAAKELEELSDM 452 (863)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHcCCEEEEEEeCCChHHHHHHHHHh
Confidence 4689999997654 6778888898887 677776666777777664
No 395
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=51.92 E-value=74 Score=26.07 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=27.6
Q ss_pred ccCcceEEEEcC------CcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 100 KRRFGCLVVVSD------DSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 100 ~r~v~clvLVSD------DsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
..|++-.++-.+ ..+|...++.+++.|+..||.||..
T Consensus 54 ~lgip~~~i~~~~~~~~~~~~l~~~l~~~~~~g~~~vv~G~i~ 96 (218)
T TIGR03679 54 ALGIPLVKIETSGEKEKEVEDLKGALKELKREGVEGIVTGAIA 96 (218)
T ss_pred HhCCCEEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 457876655444 2347888888888899999999984
No 396
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=51.91 E-value=23 Score=33.73 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=34.3
Q ss_pred CcceEEEEcCCc------chHHHHHHHH-HcCCeEEEEcCCCchHHHhhhhcccch
Q 045172 102 RFGCLVVVSDDS------DFVEVFQEAT-LRWLKMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 102 ~v~clvLVSDDs------DF~~~lr~Ar-er~l~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
..+||+++..|. -+...+..|+ ++|.+.||| |.-.......||.|++-
T Consensus 196 ~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivI-DPr~s~ta~~Ad~~l~i 250 (759)
T PRK15488 196 NSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVF-EPRFSVVASKADEWHAI 250 (759)
T ss_pred hCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEE-CCCCCcchhhCCeeecc
Confidence 459999998773 1334455666 899999999 44334667899999853
No 397
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=51.84 E-value=94 Score=23.17 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=42.7
Q ss_pred CcccC-CCcHHHHHhhceEEEEecCCCcc----H-HHH---HHHHHHHHhhccCcceE--EEE----cCCc----chHHH
Q 045172 58 TPKVG-YGFADELKRAWFWVRMVLVKPQD----A-DVL---LRNYMVAMVDKRRFGCL--VVV----SDDS----DFVEV 118 (157)
Q Consensus 58 ~pkvg-ygla~eLrRAGv~V~~V~dkpqA----A-D~A---L~~~~~~~~~~r~v~cl--vLV----SDDs----DF~~~ 118 (157)
.|.-| ..+-..|+..|+.+-.++.+|.. - ..+ ....+...+...++... +.. |++. --.++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 34444 45678899999999999998741 0 111 22344445555666522 221 2221 22334
Q ss_pred HHHH-HHcCC---eEEEEcCC
Q 045172 119 FQEA-TLRWL---KMVVVGDM 135 (157)
Q Consensus 119 lr~A-rer~l---~tVVVGd~ 135 (157)
+..+ .+-|+ .+++|||+
T Consensus 107 ~~~~~~~~~~~~~e~i~IGDs 127 (147)
T TIGR01656 107 ILEALKRLGVDASRSLVVGDR 127 (147)
T ss_pred HHHHHHHcCCChHHEEEEcCC
Confidence 4443 33454 38899998
No 398
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=51.74 E-value=43 Score=29.08 Aligned_cols=48 Identities=19% Similarity=0.092 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhccCc---ceEEEEcCCcchHHHHHHHHHcCC---eEEEEcCC
Q 045172 88 VLLRNYMVAMVDKRRF---GCLVVVSDDSDFVEVFQEATLRWL---KMVVVGDM 135 (157)
Q Consensus 88 ~AL~~~~~~~~~~r~v---~clvLVSDDsDF~~~lr~Arer~l---~tVVVGd~ 135 (157)
..+...+.+.++..|+ ++.+++|+|.|+.+.++...+.+. -+.+||-.
T Consensus 275 ~~~~~~~~~~l~~~g~~~~~~~ii~sg~l~~~~~i~~~~~~~~~~~~~fGvGt~ 328 (343)
T cd01567 275 VELIKKVRKHLDELGIDLNKKKIIISGDLDTEEAIELLLEQGASPNDAFGVGTS 328 (343)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEEECCCCHHHHHHHHHHcCCCcCcEEeeCcc
Confidence 3556667778888888 889999999999999999999764 55555554
No 399
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=51.73 E-value=46 Score=29.66 Aligned_cols=87 Identities=7% Similarity=-0.046 Sum_probs=56.9
Q ss_pred cCcccCCC------cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHc
Q 045172 57 LTPKVGYG------FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLR 125 (157)
Q Consensus 57 l~pkvgyg------la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer 125 (157)
.++++-|| |..++++.|...-.|-..+......+..++.+.+...|++..+. |..++... +.++.+|+.
T Consensus 26 ~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~ 105 (395)
T PRK15454 26 VPPVTLCGPGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRES 105 (395)
T ss_pred cCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc
Confidence 34555555 46677888855444433355555667788899998889987765 66677666 667778887
Q ss_pred CCeEE-EEcCCCchHHHhh
Q 045172 126 WLKMV-VVGDMSDGALKRI 143 (157)
Q Consensus 126 ~l~tV-VVGd~~~~~L~r~ 143 (157)
+...| .||.++.-.....
T Consensus 106 ~~D~IiavGGGS~iD~AKa 124 (395)
T PRK15454 106 GCDGVIAFGGGSVLDAAKA 124 (395)
T ss_pred CcCEEEEeCChHHHHHHHH
Confidence 77654 5888864444433
No 400
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=51.48 E-value=49 Score=27.46 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=44.2
Q ss_pred cHHHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCc-chHHHHHHHHHcCCe-EEEEcC
Q 045172 65 FADELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS-DFVEVFQEATLRWLK-MVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs-DF~~~lr~Arer~l~-tVVVGd 134 (157)
+...|+++|+.|-.... .|.+.|.. ..+.++. ..+.|.|+++.... +|..+++.+++.|+. ++++|.
T Consensus 156 ~~~~~~~~G~~vv~~~~~~~~~~d~~--~~v~~l~-~~~pd~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 225 (333)
T cd06328 156 FKAALEKLGAAIVTEEYAPTDTTDFT--PYAQRLL-DALKKVLFVIWAGAGGPWPKLQQMGVLGYGIEITLAG 225 (333)
T ss_pred HHHHHHhCCCEEeeeeeCCCCCcchH--HHHHHHH-hcCCCEEEEEecCchhHHHHHHHhhhhcCCCeEEecc
Confidence 44578888987754432 34455543 3455555 56889888775444 899999999998877 444443
No 401
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.44 E-value=26 Score=31.85 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=35.5
Q ss_pred cCcceEEEEcCCcc-----hHHHHHHHHHc--CCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSD-----FVEVFQEATLR--WLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsD-----F~~~lr~Arer--~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...++|+++..|.. ....++.|+++ |.+.|||.-. .......||.|++
T Consensus 156 ~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~-~t~ta~~Ad~~l~ 210 (565)
T cd02754 156 EHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPR-RTRTADIADLHLP 210 (565)
T ss_pred hhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCC-CCcchHHhCeeeC
Confidence 35799999988853 33456778888 9999999554 3456778999874
No 402
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=51.40 E-value=70 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=25.7
Q ss_pred ccCcceEEEEc--CCc----chHHHHHHHHHcCCeEEEEcCCC
Q 045172 100 KRRFGCLVVVS--DDS----DFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 100 ~r~v~clvLVS--DDs----DF~~~lr~Arer~l~tVVVGd~~ 136 (157)
..|++.+++-. ++. ++...|+.++++|+..||.||..
T Consensus 56 ~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~ 98 (194)
T cd01994 56 AMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAIL 98 (194)
T ss_pred HcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 45888776653 333 44556666666799999999984
No 403
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=51.35 E-value=1.2e+02 Score=27.32 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=39.7
Q ss_pred HHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC--CchHHHhhhhcccchh
Q 045172 91 RNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM--SDGALKRIANAFFSWS 151 (157)
Q Consensus 91 ~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~--~~~~L~r~AD~~fsW~ 151 (157)
...+.+.|...++.|.|-...+-| .++++..++.|+++|.+|=+ ++..|+. .+-..+.+
T Consensus 263 ~~~l~~~l~~~~i~~~~~~~~~~~-~e~l~~l~~aG~~~v~iGiES~s~~~L~~-~~K~~~~~ 323 (472)
T TIGR03471 263 AEEIARKLGPLGVTWSCNARANVD-YETLKVMKENGLRLLLVGYESGDQQILKN-IKKGLTVE 323 (472)
T ss_pred HHHHHHHHhhcCceEEEEecCCCC-HHHHHHHHHcCCCEEEEcCCCCCHHHHHH-hcCCCCHH
Confidence 344555555678888887765555 57899999999999999987 3344443 23334443
No 404
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=51.32 E-value=15 Score=30.96 Aligned_cols=77 Identities=12% Similarity=0.002 Sum_probs=48.8
Q ss_pred CCcHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcc--hHHHHHHHHHcCCeEEEEcCCCc
Q 045172 63 YGFADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD--FVEVFQEATLRWLKMVVVGDMSD 137 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD--F~~~lr~Arer~l~tVVVGd~~~ 137 (157)
-.|+..|+..|..|-..|. .|.. |..+.. .++-+ ...||+|.+|-+.- |...+..-.-.+++.+.||+.|.
T Consensus 31 ~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~~~~-~l~~l--~~~d~iiftS~NAV~~~~~~~~~~~~~~~~~~AVG~~TA 106 (266)
T PRK08811 31 APLRRAVARHGGRLLALSPWRLQRLD-TAQARD-ALRQA--LAAPIVVFTSPAAVRAAHRLLPLQRPARAHWLSVGEGTA 106 (266)
T ss_pred HHHHHHHHHCCCcEEEcCceeecCCC-chhHHH-HHhhc--ccCCEEEEECHHHHHHHHHHhcccCccCCeEEEECHHHH
Confidence 6789999999999988766 1221 122222 22334 26899999998762 11222111125788899999987
Q ss_pred hHHHhh
Q 045172 138 GALKRI 143 (157)
Q Consensus 138 ~~L~r~ 143 (157)
.+|...
T Consensus 107 ~aL~~~ 112 (266)
T PRK08811 107 RALQAC 112 (266)
T ss_pred HHHHHc
Confidence 777754
No 405
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=51.19 E-value=1.3e+02 Score=26.03 Aligned_cols=56 Identities=16% Similarity=0.062 Sum_probs=32.5
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL 124 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are 124 (157)
+..+++.+||.--.+||=|-.-...+ .+.+...|++.+.|||-.+.-..+-+.+..
T Consensus 107 F~~~~~~aGvdGlIipDLP~ee~~~~----~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLPPEESEEL----REAAKKHGLDLIPLVAPTTPEERIKKIAKQ 162 (259)
T ss_dssp HHHHHHHHTEEEEEETTSBGGGHHHH----HHHHHHTT-EEEEEEETTS-HHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCChHHHHHH----HHHHHHcCCeEEEEECCCCCHHHHHHHHHh
Confidence 55677777777777777776333333 233345677777777666666655555544
No 406
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=51.17 E-value=87 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=37.7
Q ss_pred HhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEE
Q 045172 70 KRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMV 130 (157)
Q Consensus 70 rRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tV 130 (157)
.-.|+.|-. +...+.||..+.+.+.+.- +.+ .-+++||+|.. +-+.|+.+|...+
T Consensus 64 ~~~gi~Vvf-t~~~~tAD~~Ie~~v~~~~-~~~-~~v~VVTSD~~---iq~~~~~~GA~~i 118 (166)
T PF05991_consen 64 EYGGIEVVF-TKEGETADDYIERLVRELK-NRP-RQVTVVTSDRE---IQRAARGRGAKRI 118 (166)
T ss_pred eeCceEEEE-CCCCCCHHHHHHHHHHHhc-cCC-CeEEEEeCCHH---HHHHHhhCCCEEE
Confidence 336888877 7778999988777766544 334 66677777754 4455667777665
No 407
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=51.11 E-value=16 Score=30.12 Aligned_cols=61 Identities=25% Similarity=0.079 Sum_probs=41.9
Q ss_pred CcccCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCCc
Q 045172 58 TPKVGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMSD 137 (157)
Q Consensus 58 ~pkvgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~~ 137 (157)
+-||||.+|..|=+-||.|-+++. ..=..|+..+-.- .-+-|+++++.+. ++-+|||+.+
T Consensus 7 ~sKvaraiA~~LC~rgv~V~m~~~---~~y~~lk~~~~~~----~~~~Lv~~~~~~~-------------K~WlVGd~l~ 66 (164)
T PF12076_consen 7 TSKVARAIALALCRRGVQVVMLSK---ERYESLKSEAPEE----CQSNLVQSTSYQA-------------KTWLVGDGLT 66 (164)
T ss_pred ccHHHHHHHHHHHhcCCEEEEecH---HHHHHHHHHcCHH----hhccEEeecCCCc-------------eeEEeCCCCC
Confidence 358899999999999999999721 1113444444322 2356888887654 9999999943
Q ss_pred h
Q 045172 138 G 138 (157)
Q Consensus 138 ~ 138 (157)
.
T Consensus 67 ~ 67 (164)
T PF12076_consen 67 E 67 (164)
T ss_pred H
Confidence 3
No 408
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=51.05 E-value=53 Score=26.29 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred hhcCcccCC-CcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc---------chHHHHHHHHH
Q 045172 55 AILTPKVGY-GFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS---------DFVEVFQEATL 124 (157)
Q Consensus 55 ~~l~pkvgy-gla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs---------DF~~~lr~Are 124 (157)
.++.|.-+| +....++..|+.+..++..++..+.-.... .+...+.++.++++++-.. ++..+++.+++
T Consensus 85 ~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~ 163 (350)
T cd00609 85 EVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLEL-LEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKK 163 (350)
T ss_pred EEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHH-HHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHh
Confidence 477777664 588999999999999877655322111112 2222256777777766322 46677788989
Q ss_pred cCCeEEE
Q 045172 125 RWLKMVV 131 (157)
Q Consensus 125 r~l~tVV 131 (157)
.|+..++
T Consensus 164 ~~~~~iv 170 (350)
T cd00609 164 HGILIIS 170 (350)
T ss_pred CCeEEEE
Confidence 8876554
No 409
>PF09338 Gly_reductase: Glycine/sarcosine/betaine reductase component B subunits; InterPro: IPR015417 This is a family of glycine reductase, sarcosine reductase and betaine reductases. These enzymes catalyse the following reactions: sarcosine reductase: Acetyl phosphate + methylamine + thioredoxin disulphide = N-methylglycine + phosphate + thioredoxin. glycine reductase: Acetyl phosphate + NH3 + thioredoxin disulphide = glycine + phosphate + thioredoxin. betaine reductase: Acetyl phosphate + trimethylamine + thioredoxin disulphide = N,N,N-trimethylglycine + phosphate + thioredoxin. ; GO: 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process
Probab=51.00 E-value=48 Score=31.02 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=34.4
Q ss_pred HHhhccCcceEEEEcC-----CcchHHHHHHHHHcCCeEEEEcCC
Q 045172 96 AMVDKRRFGCLVVVSD-----DSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 96 ~~~~~r~v~clvLVSD-----DsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
.++...|+|+.++..+ |.||.-.++.+-++|.+||.|-|+
T Consensus 297 ~la~~LgaDGaIvs~eG~GN~d~D~~~~~~~~e~~GIktV~it~e 341 (428)
T PF09338_consen 297 KLAEMLGADGAIVSEEGFGNPDVDFAMNIEEIEKRGIKTVGITDE 341 (428)
T ss_pred HHHHHhCCCEEEEEecCCCchhHHHHHHHHHHHHCCCCEEEecce
Confidence 3344569999998875 899999999999999999999976
No 410
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=50.91 E-value=46 Score=22.11 Aligned_cols=40 Identities=15% Similarity=-0.057 Sum_probs=18.9
Q ss_pred HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC
Q 045172 66 ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD 111 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD 111 (157)
+.+|+.+|+.|.+-.. + ..+.+++..+- ..|+..++.|.+
T Consensus 24 ~~~Lr~~g~~v~~~~~-~----~~~~k~~~~a~-~~g~~~~iiig~ 63 (94)
T cd00738 24 LNALLANGIRVLYDDR-E----RKIGKKFREAD-LRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHCCCEEEecCC-C----cCHhHHHHHHH-hCCCCEEEEECC
Confidence 5556666665554221 1 23444443332 455555555554
No 411
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=50.84 E-value=66 Score=22.43 Aligned_cols=54 Identities=15% Similarity=0.005 Sum_probs=43.3
Q ss_pred ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc-chHHHH--HHHHHcCCeEEEEc
Q 045172 79 VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS-DFVEVF--QEATLRWLKMVVVG 133 (157)
Q Consensus 79 V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs-DF~~~l--r~Arer~l~tVVVG 133 (157)
|...+.-.|..++...++.+ .....-++|||-.+ .-+|.+ +-|+++|+..++.-
T Consensus 8 i~GgR~~~D~~~i~~~Ld~~-~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 8 ITGGRDWTDHELIWAALDKV-HARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred EEECCccccHHHHHHHHHHH-HHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 46667778999999999888 46667788999998 777765 56888999988763
No 412
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=50.67 E-value=96 Score=26.21 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=31.2
Q ss_pred HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH
Q 045172 66 ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL 124 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are 124 (157)
..+++.+|+..-+++|-|-. . .....+.+...|++.+.+|+..+....+-..+..
T Consensus 108 ~~~~~~aGvdgviipDlp~e--e--~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~ 162 (256)
T TIGR00262 108 YAKCKEVGVDGVLVADLPLE--E--SGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEK 162 (256)
T ss_pred HHHHHHcCCCEEEECCCChH--H--HHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHh
Confidence 34677777777777776651 1 1233334445666666666666665555544444
No 413
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=50.65 E-value=1.2e+02 Score=23.73 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=14.0
Q ss_pred cHHHHHhhceEEEEecCCCc
Q 045172 65 FADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq 84 (157)
+-..|++.|+.+=.++..+.
T Consensus 100 ~l~~l~~~g~~~~i~S~~~~ 119 (222)
T PRK10826 100 ALALCKAQGLKIGLASASPL 119 (222)
T ss_pred HHHHHHHCCCeEEEEeCCcH
Confidence 33567788888888877664
No 414
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=50.64 E-value=1.1e+02 Score=23.48 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=36.7
Q ss_pred CCcHHHHHhhceEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEcCCcc-----hHHHHHHHHHcCC---eEEEEc
Q 045172 63 YGFADELKRAWFWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVSDDSD-----FVEVFQEATLRWL---KMVVVG 133 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVSDDsD-----F~~~lr~Arer~l---~tVVVG 133 (157)
-.+=..|+..|+.+=.|+..+. .+...|...=++ .-++. ++.|++.. =.-+...+++-|+ ++|+||
T Consensus 100 ~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~----~~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ig 174 (221)
T TIGR02253 100 RDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR----DFFDA-VITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVG 174 (221)
T ss_pred HHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH----HhccE-EEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEEC
Confidence 3455678889999999999875 333333221111 11243 34444432 1223333344555 589999
Q ss_pred CC
Q 045172 134 DM 135 (157)
Q Consensus 134 d~ 135 (157)
|+
T Consensus 175 Ds 176 (221)
T TIGR02253 175 DR 176 (221)
T ss_pred CC
Confidence 97
No 415
>PRK06769 hypothetical protein; Validated
Probab=50.62 E-value=28 Score=26.99 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=12.4
Q ss_pred cHHHHHhhceEEEEecCCCc
Q 045172 65 FADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq 84 (157)
+-.+|+..|+.+=.++.++.
T Consensus 36 ~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 36 SLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred HHHHHHHCCCEEEEEECCch
Confidence 33466666777777766653
No 416
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=50.60 E-value=77 Score=25.52 Aligned_cols=59 Identities=10% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHhhccCcceEEEEcCCcch----HHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchhh
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSDF----VEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWSD 152 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsDF----~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~e 152 (157)
..+.+.+ ..|-++.+|+|-|+-| ..+++.+.+.|+.+-||-..+ ....-.|-+.++|.+
T Consensus 81 ~~i~~~~-~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~veviPGiS-s~~~a~a~~g~~l~~ 143 (230)
T TIGR01467 81 EAVAAEL-EEGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVVPGIT-SFAACASAAGLPLVE 143 (230)
T ss_pred HHHHHHH-HCCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEeCChh-HHHHHHHHhCCCccc
Confidence 3444555 4677899999999977 577777777788887886664 455556667777664
No 417
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=50.55 E-value=40 Score=27.59 Aligned_cols=61 Identities=8% Similarity=0.075 Sum_probs=39.7
Q ss_pred cHHHHHhhce---EEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 65 FADELKRAWF---WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 65 la~eLrRAGv---~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
+...++..|. .|....-.|.. |. ...+.++. ..+.+.|++.+...+-..+++.|++.|+..
T Consensus 145 l~~~~~~~~~~g~~v~~~~~~~~~-d~--~~~l~~i~-~~~~d~vv~~~~~~~~~~~~~qa~~~g~~~ 208 (327)
T cd06382 145 LQELLQAFGISGITITVRQLDDDL-DY--RPLLKEIK-NSGDNRIIIDCSADILIELLKQAQQVGMMS 208 (327)
T ss_pred HHHHHHhhccCCCeEEEEEccCCc-cH--HHHHHHHH-hcCceEEEEECCHHHHHHHHHHHHHhCccc
Confidence 4445555554 33332222333 33 34444444 578899999999999999999999999865
No 418
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=50.39 E-value=27 Score=32.48 Aligned_cols=46 Identities=13% Similarity=0.142 Sum_probs=36.9
Q ss_pred ceEEEEcC---CcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 104 GCLVVVSD---DSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 104 ~clvLVSD---DsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
++++.+|- ..+-.+.++.|+++|++||.|-+..+..|.+.||..+.
T Consensus 340 dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~ 388 (607)
T TIGR01135 340 TLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLY 388 (607)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEE
Confidence 56666654 33667788999999999999999877899999998764
No 419
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=50.16 E-value=57 Score=28.59 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=50.8
Q ss_pred HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEE
Q 045172 67 DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVV 132 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVV 132 (157)
..+...|-...+-..+|-. +..-.+.+.+.+.+.+|+.|+.+--|.-|....+++.+.++.+|+|
T Consensus 57 ~~~~~gGt~LgtsR~~~~~-~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigi 121 (301)
T TIGR02482 57 GIIHRGGTILGTARCPEFK-TEEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGL 121 (301)
T ss_pred hHHhCCCceeccCCCCccC-CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEee
Confidence 3456777777774444432 4556778899999999999999999999999999998877777666
No 420
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=49.99 E-value=70 Score=28.36 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=40.4
Q ss_pred cHHHHHhhceEEEE---ecCCCccHHHHHHHHHHHHhhccCcceEEEE--cCCcchHHHHHHHHHcCCe--EEEEcC
Q 045172 65 FADELKRAWFWVRM---VLVKPQDADVLLRNYMVAMVDKRRFGCLVVV--SDDSDFVEVFQEATLRWLK--MVVVGD 134 (157)
Q Consensus 65 la~eLrRAGv~V~~---V~dkpqAAD~AL~~~~~~~~~~r~v~clvLV--SDDsDF~~~lr~Arer~l~--tVVVGd 134 (157)
+..++++.|+-|-. ++..|.+.| +...+..+. ..+.+..|+| ++..+...+++.|++.|+. .+.||-
T Consensus 206 ~~~~~~~~gi~i~~~~~i~~~~~~~d--~~~~l~~lk-~~~~da~vvv~~~~~~~~~~~l~~a~~~g~~~~~~wi~s 279 (472)
T cd06374 206 FKELAAHEGLCIAHSDKIYSNAGEQS--FDRLLRKLR-SRLPKARVVVCFCEGMTVRGLLMAMRRLGVGGEFQLIGS 279 (472)
T ss_pred HHHHHHHCCeeEEEEEEecCCCchHH--HHHHHHHHH-hcCCCcEEEEEEechHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34677788977653 343444434 333444433 3344544444 6777888999999999996 355554
No 421
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=49.94 E-value=46 Score=27.41 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=31.3
Q ss_pred HHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEc
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVG 133 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVG 133 (157)
..+.+++ ..+.+.|++...-.+...+++.+++.+.+.-++|
T Consensus 182 ~~v~~i~-~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~i~~ 222 (332)
T cd06344 182 TAVSQAI-NNGATVLVLFPDTDTLDKALEVAKANKGRLTLLG 222 (332)
T ss_pred HHHHHHH-hcCCCEEEEeCChhHHHHHHHHHHhcCCCceEEe
Confidence 3444455 4678999998888799999999999887666665
No 422
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=49.90 E-value=73 Score=28.10 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=42.8
Q ss_pred HHHHhhc-eEEEE---ecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE--EEEc
Q 045172 67 DELKRAW-FWVRM---VLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM--VVVG 133 (157)
Q Consensus 67 ~eLrRAG-v~V~~---V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t--VVVG 133 (157)
.+++..| +-|-. ++..|.+.|. ...+.++....+.+.|++.+...+-..+++.|++.|+.- +.||
T Consensus 194 ~~~~~~g~~~v~~~~~i~~~~~~~d~--~~~l~~ik~~~~~~vIvl~~~~~~~~~ll~~a~~~~~~g~~~wig 264 (463)
T cd06376 194 QISREAGGVCIAQSIKIPREPRPGEF--DKIIKRLLETPNARAVIIFANEDDIRRVLEAAKRANQVGHFLWVG 264 (463)
T ss_pred HHHHHcCCceEEEEEecCCCCCHHHH--HHHHHHHhccCCCeEEEEecChHHHHHHHHHHHhcCCcCceEEEE
Confidence 3445554 44432 4556655554 344444432358999999999999999999999988863 4454
No 423
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=49.66 E-value=90 Score=24.13 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=45.8
Q ss_pred hceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcC--Ccch--------HHHHHHHHHcCCeEEEEcCCCc
Q 045172 72 AWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD--DSDF--------VEVFQEATLRWLKMVVVGDMSD 137 (157)
Q Consensus 72 AGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD--DsDF--------~~~lr~Arer~l~tVVVGd~~~ 137 (157)
.|..|-.+ ++.|.=.|..=..+++-..+..+.++++|=.+ +.|| .++|++..--+++..||||.+.
T Consensus 4 ~~~~v~~~~s~~~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~iklAivGD~s~ 80 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDEQDALDLIGTAYEHGADRIILPKEALSEDFFDLRTGLAGEILQKFVNYRIKLAIVGDFSA 80 (113)
T ss_pred CCeEEEEEeCCCCeecchhHHHHHHHHHHHcCCCEEEEEhHHCCHHHHHhhcchHHHHHHHHHhhceeEEEEEcccc
Confidence 34444444 56666444444444444445789999999766 3566 4689999999999999999853
No 424
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=49.63 E-value=1e+02 Score=22.69 Aligned_cols=126 Identities=13% Similarity=0.033 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhhhhhHhhhhHhhccchhhhhhhhhhhhhHHHHH-HHHhhcCcccC-CCcHHHHHhhceEEEEecCC
Q 045172 5 NDKLVNHFRQIHEGEQKKRSNQIESARGKVRVLLVGNYSIKMEKNKM-AASAILTPKVG-YGFADELKRAWFWVRMVLVK 82 (157)
Q Consensus 5 ~~~L~kHFkqlHerEr~Krl~rl~s~kG~rr~~~~~~~~~k~~kY~~-Aar~~l~pkvg-ygla~eLrRAGv~V~~V~dk 82 (157)
...+..-+.+-...-+..-..++..++|... +...+ ...+.++|.-| ..+-..|+..|+.+-.+|..
T Consensus 30 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~ivS~~ 98 (177)
T TIGR01488 30 VIELTRLAPSGRISFEDALGRRLALLHRSRS-----------EEVAKEFLARQVALRPGARELISWLKERGIDTVIVSGG 98 (177)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhCCCCH-----------HHHHHHHHHhcCCcCcCHHHHHHHHHHCCCEEEEECCC
Q ss_pred CccHHHHHHHHHHHHhhccCcceEEEEcCCcchHH---------------HHHHHHHc----CCeEEEEcCC-CchHHHh
Q 045172 83 PQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVE---------------VFQEATLR----WLKMVVVGDM-SDGALKR 142 (157)
Q Consensus 83 pqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~---------------~lr~Arer----~l~tVVVGd~-~~~~L~r 142 (157)
++ ..+..-+.+.=...=+.+.+-+.+|-.+++ +++...++ .-.++.|||+ +|-...+
T Consensus 99 ~~---~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~ 175 (177)
T TIGR01488 99 FD---FFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELLEESKITLKKIIAVGDSVNDLPMLK 175 (177)
T ss_pred cH---HHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Q ss_pred hh
Q 045172 143 IA 144 (157)
Q Consensus 143 ~A 144 (157)
.|
T Consensus 176 ~a 177 (177)
T TIGR01488 176 LA 177 (177)
T ss_pred cC
No 425
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=49.42 E-value=74 Score=26.18 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=37.6
Q ss_pred cCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcC
Q 045172 80 LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGD 134 (157)
Q Consensus 80 ~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd 134 (157)
...+.+.|..- ++.++. ..+.|.+++.....+...+++.+++.|+ +..++|-
T Consensus 167 ~~~~~~~d~~~--~i~~l~-~~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 220 (333)
T cd06359 167 YTKLGQLDFSA--ELAQIR-AAKPDAVFVFLPGGMGVNFVKQYRQAGLKKDIPLYSP 220 (333)
T ss_pred cCCCCCcchHH--HHHHHH-hCCCCEEEEEccCccHHHHHHHHHHcCcccCCeeecc
Confidence 33345566642 334444 6788999888788889999999999999 7777764
No 426
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=49.35 E-value=1e+02 Score=26.98 Aligned_cols=75 Identities=11% Similarity=0.011 Sum_probs=46.9
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEE-EcCCcchH---HHHHHHHHcCCeE-EEEcCCCchH
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV-VSDDSDFV---EVFQEATLRWLKM-VVVGDMSDGA 139 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL-VSDDsDF~---~~lr~Arer~l~t-VVVGd~~~~~ 139 (157)
|..+|++-|=.|-.|.|+-.. +..++.+.+...|+++.+. +..++... +.++.+++.+... |.||.++...
T Consensus 14 l~~~l~~~~~r~livtd~~~~----~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D 89 (374)
T cd08183 14 LPALAAELGRRVLLVTGASSL----RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVID 89 (374)
T ss_pred HHHHHHHcCCcEEEEECCchH----HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHH
Confidence 445666655556667774332 6677888887788877654 55566554 5666677766554 5578876555
Q ss_pred HHhh
Q 045172 140 LKRI 143 (157)
Q Consensus 140 L~r~ 143 (157)
....
T Consensus 90 ~aK~ 93 (374)
T cd08183 90 AGKA 93 (374)
T ss_pred HHHH
Confidence 5544
No 427
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=49.20 E-value=1e+02 Score=22.42 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=37.8
Q ss_pred cHHHHHhhceEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEcCCc----chHHHHHHHHHcCC--eEEEEcCC
Q 045172 65 FADELKRAWFWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVSDDS----DFVEVFQEATLRWL--KMVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVSDDs----DF~~~lr~Arer~l--~tVVVGd~ 135 (157)
+-..|+..|+.+-.|+..+. .++..+... + ..-++.+ ..|||. +=..+...+++-|+ ++++|||+
T Consensus 72 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~----l-~~~f~~i-~~~~~~~~Kp~~~~~~~~~~~~~~~~~~l~iGDs 143 (154)
T TIGR01549 72 LLKRLKEAGIKLGIISNGSLRAQKLLLRKH----L-GDYFDLI-LGSDEFGAKPEPEIFLAALESLGLPPEVLHVGDN 143 (154)
T ss_pred HHHHHHHCcCeEEEEeCCchHHHHHHHHHH----H-HhcCcEE-EecCCCCCCcCHHHHHHHHHHcCCCCCEEEEeCC
Confidence 44567778999999998886 444433332 2 2234443 345543 22233344444555 79999998
No 428
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=49.14 E-value=33 Score=33.03 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=37.4
Q ss_pred ceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 104 GCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 104 ~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
++++.+|-. .|-...++.|+++|.+|+.|-...+..|.+.||.-+.
T Consensus 403 dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~ 451 (670)
T PTZ00394 403 DVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIH 451 (670)
T ss_pred CEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEE
Confidence 677788743 3566678999999999999988767899999998764
No 429
>PRK15138 aldehyde reductase; Provisional
Probab=49.00 E-value=81 Score=28.01 Aligned_cols=74 Identities=7% Similarity=0.021 Sum_probs=46.9
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCch
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSDG 138 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~~ 138 (157)
|..+|++ |=.|-.|.+.+...-..+...+.+.+. +++..+. |..++... ..++.+|+.+...|| ||.++..
T Consensus 22 l~~~l~~-~~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 22 LREQIPA-DARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred HHHHHhc-CCeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 4456665 545666776554333455667888883 6665544 55556555 667778888998888 9998544
Q ss_pred HHH
Q 045172 139 ALK 141 (157)
Q Consensus 139 ~L~ 141 (157)
...
T Consensus 99 D~A 101 (387)
T PRK15138 99 DGT 101 (387)
T ss_pred HHH
Confidence 333
No 430
>PRK06683 hypothetical protein; Provisional
Probab=48.95 E-value=82 Score=22.50 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHHHhhccCcceEEEEcCCcc---hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 92 NYMVAMVDKRRFGCLVVVSDDSD---FVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVSDDsD---F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
++.+..+ .+|--.+|+|..|.+ -.++..++++.++..+.+++. ..|++.+-+-|+
T Consensus 17 ~~v~kai-k~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~--~eLG~A~G~~~~ 74 (82)
T PRK06683 17 KRTLEAI-KNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESV--RKLGKVAGIQVG 74 (82)
T ss_pred HHHHHHH-HcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCH--HHHHHHhCCccc
Confidence 3455666 567777777777765 567788899999999999954 689988876553
No 431
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=48.79 E-value=68 Score=24.62 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=24.3
Q ss_pred HHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 91 RNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 91 ~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
...+.+++....-...|++++|+--.++++.+++.|+.
T Consensus 166 ~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 203 (267)
T cd06283 166 DERLRQLLNKPKKKTAIFAANGLILLEVLKALKELGIR 203 (267)
T ss_pred HHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCC
Confidence 45566666332223345556666667899999999983
No 432
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=48.41 E-value=16 Score=34.97 Aligned_cols=82 Identities=26% Similarity=0.216 Sum_probs=52.6
Q ss_pred Cccc-CCCcHHHHHhhceEEEEecC---CCccHHHHHHHHHHHHhhccCcceEEEEcCCcc--hHHHHHHHHHcCCeEEE
Q 045172 58 TPKV-GYGFADELKRAWFWVRMVLV---KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSD--FVEVFQEATLRWLKMVV 131 (157)
Q Consensus 58 ~pkv-gygla~eLrRAGv~V~~V~d---kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsD--F~~~lr~Arer~l~tVV 131 (157)
.|.- +..|+..|+..|+.|-..|. .|-.....|. ..+.-+ ..+||||.+|-+.- |-+.+...+-.+++.++
T Consensus 10 Rp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~-~~l~~L--~~yd~iIFTS~nAV~~~~~~l~~~~~~~~~i~A 86 (656)
T PRK06975 10 RPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLR-AALARL--SDYALVVFVSPNAVDRALARLDAIWPHALPVAV 86 (656)
T ss_pred CcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHH-HHHHhC--CCCCEEEEECHHHHHHHHHHHHhhCccCCeEEE
Confidence 3444 37789999999998877532 2211112232 333334 37899999998763 34444444446889999
Q ss_pred EcCCCchHHHh
Q 045172 132 VGDMSDGALKR 142 (157)
Q Consensus 132 VGd~~~~~L~r 142 (157)
||..|..+|..
T Consensus 87 VG~~Ta~aL~~ 97 (656)
T PRK06975 87 VGPGSVAALAR 97 (656)
T ss_pred ECHHHHHHHHH
Confidence 99998777765
No 433
>PF12813 XPG_I_2: XPG domain containing
Probab=48.27 E-value=26 Score=29.61 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=29.5
Q ss_pred HHHHHhh---ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchH
Q 045172 66 ADELKRA---WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV 116 (157)
Q Consensus 66 a~eLrRA---Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~ 116 (157)
...|+.- |+.|.+| |.-||.-....+. ..+| .++|.||||-
T Consensus 10 ~e~L~~~~~~~~~~~~~---~~EAD~~~A~~A~------~~~~-~VLt~DSDf~ 53 (246)
T PF12813_consen 10 IEALRESWRYGVPVVQC---PGEADRECAALAR------KWGC-PVLTNDSDFL 53 (246)
T ss_pred HHHHHHHhhcCCcEEEc---CccchHHHHHHHH------HcCC-eEEccCCCEE
Confidence 4578887 8888887 6678876665542 3456 7789999983
No 434
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=48.21 E-value=32 Score=29.86 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=45.8
Q ss_pred HHHHHh--hceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchH--------HHHHH-HHHcCCeEEEEcC
Q 045172 66 ADELKR--AWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV--------EVFQE-ATLRWLKMVVVGD 134 (157)
Q Consensus 66 a~eLrR--AGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~--------~~lr~-Arer~l~tVVVGd 134 (157)
|.-||- -|-.|-.++..|..|+.+|.+ +| ..|+|-.+|++|+. |. .+|.. ++..+..-|+.|+
T Consensus 46 AlrLke~~~~~eV~vlt~Gp~~a~~~lr~----aL-AmGaDraili~d~~-~~~~d~~~ta~~Laa~~~~~~~~LVl~G~ 119 (260)
T COG2086 46 ALRLKEKGYGGEVTVLTMGPPQAEEALRE----AL-AMGADRAILITDRA-FAGADPLATAKALAAAVKKIGPDLVLTGK 119 (260)
T ss_pred HHHhhccCCCceEEEEEecchhhHHHHHH----HH-hcCCCeEEEEeccc-ccCccHHHHHHHHHHHHHhcCCCEEEEec
Confidence 344555 456788889999999999887 55 68999999999855 32 22322 3346777888887
Q ss_pred C
Q 045172 135 M 135 (157)
Q Consensus 135 ~ 135 (157)
.
T Consensus 120 q 120 (260)
T COG2086 120 Q 120 (260)
T ss_pred c
Confidence 6
No 435
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=48.10 E-value=20 Score=31.09 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=33.3
Q ss_pred cCCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchhhhhcC
Q 045172 110 SDDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWSDLLMG 156 (157)
Q Consensus 110 SDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~ev~~G 156 (157)
++-....+++...+..|.++-.+=|..+..+.-.+.+.-++-|+-+|
T Consensus 110 ~~~~~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG 156 (239)
T PRK05265 110 GQFDKLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTG 156 (239)
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEech
Confidence 33344566777778888887777787777777777777777776666
No 436
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=47.97 E-value=73 Score=26.43 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=46.5
Q ss_pred hcCcccC-CCcHHHHHhhceEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEcCC------cchHHHHHHHHHcCC
Q 045172 56 ILTPKVG-YGFADELKRAWFWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVSDD------SDFVEVFQEATLRWL 127 (157)
Q Consensus 56 ~l~pkvg-ygla~eLrRAGv~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVSDD------sDF~~~lr~Arer~l 127 (157)
++++..+ |......++.|..++.|+..+. ..|. .++.+.+. .+..++|+++-. .+...+.+.+++.|.
T Consensus 107 vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~---~~l~~~i~-~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~ 182 (371)
T PRK13520 107 IVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDV---KAVEDLID-DNTIGIVGIAGTTELGQVDPIPELSKIALENGI 182 (371)
T ss_pred EEecCcchHHHHHHHHHcCceEEEecCCCCCcCCH---HHHHHHHh-hCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCC
Confidence 5665555 4555566788999999975433 2343 34445553 345567766532 257788889999887
Q ss_pred eEEEEcCC
Q 045172 128 KMVVVGDM 135 (157)
Q Consensus 128 ~tVVVGd~ 135 (157)
-.+| |.
T Consensus 183 ~liv--D~ 188 (371)
T PRK13520 183 FLHV--DA 188 (371)
T ss_pred CEEE--Ee
Confidence 5554 65
No 437
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=47.83 E-value=72 Score=23.94 Aligned_cols=68 Identities=21% Similarity=0.091 Sum_probs=33.0
Q ss_pred CCCcHHHHHhhceEEEEecCCCc-cHHHHHHHHHHHHhhccCcceEEEEcCCc-----chHHHHHHHHHcC---CeEEEE
Q 045172 62 GYGFADELKRAWFWVRMVLVKPQ-DADVLLRNYMVAMVDKRRFGCLVVVSDDS-----DFVEVFQEATLRW---LKMVVV 132 (157)
Q Consensus 62 gygla~eLrRAGv~V~~V~dkpq-AAD~AL~~~~~~~~~~r~v~clvLVSDDs-----DF~~~lr~Arer~---l~tVVV 132 (157)
|-.+-..|++ ++..-.++.+|+ .++..|...=+ ..=++ .++.|||. +=..+.+.++.-| -.+++|
T Consensus 92 ~~e~L~~L~~-~~~l~I~T~~~~~~~~~~l~~~~l----~~~fd-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~i 165 (188)
T PRK10725 92 LIEVVKAWHG-RRPMAVGTGSESAIAEALLAHLGL----RRYFD-AVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVF 165 (188)
T ss_pred HHHHHHHHHh-CCCEEEEcCCchHHHHHHHHhCCc----HhHce-EEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEE
Confidence 3344445554 466667788876 22333332111 01124 35555542 2223344444444 458999
Q ss_pred cCC
Q 045172 133 GDM 135 (157)
Q Consensus 133 Gd~ 135 (157)
||+
T Consensus 166 gDs 168 (188)
T PRK10725 166 EDA 168 (188)
T ss_pred ecc
Confidence 998
No 438
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=47.66 E-value=68 Score=27.73 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=48.2
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEE--EEcCCcchHH---HHHHHHHcCCeEEE-EcCCCch
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLV--VVSDDSDFVE---VFQEATLRWLKMVV-VGDMSDG 138 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clv--LVSDDsDF~~---~lr~Arer~l~tVV-VGd~~~~ 138 (157)
|+.++++-|=.|-.|.|+.... .....+.+.+...|+++.+ -|+.++.+.. ++..+++.+...|| ||.++..
T Consensus 14 l~~~~~~~~~r~liv~d~~~~~--~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~ 91 (345)
T cd08171 14 IPEVCEKYGKKVVVIGGKTALA--AAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAI 91 (345)
T ss_pred HHHHHHhcCCEEEEEeCHHHHH--HHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHH
Confidence 4566666565666777754432 3477778888667886643 4566777664 55566777766655 8988544
Q ss_pred HHHhh
Q 045172 139 ALKRI 143 (157)
Q Consensus 139 ~L~r~ 143 (157)
.....
T Consensus 92 D~aK~ 96 (345)
T cd08171 92 DTVKV 96 (345)
T ss_pred HHHHH
Confidence 44433
No 439
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=47.66 E-value=52 Score=25.41 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=15.1
Q ss_pred cHHHHHhhceEEEEecCCCc
Q 045172 65 FADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpq 84 (157)
+-..|++.|+.+-.++..+.
T Consensus 102 ~L~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 102 AIKTLRAKGFKTACITNNFP 121 (211)
T ss_pred HHHHHHHCCCeEEEEeCCCC
Confidence 44578888988888887765
No 440
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=47.58 E-value=36 Score=28.67 Aligned_cols=70 Identities=10% Similarity=-0.045 Sum_probs=38.8
Q ss_pred CCcHHHHHhhceEEEEec---CCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH------cCCeEEEEc
Q 045172 63 YGFADELKRAWFWVRMVL---VKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL------RWLKMVVVG 133 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~---dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are------r~l~tVVVG 133 (157)
.-|+.+|+..|+.|..++ ..|...+......+. . .+...++++|+-|-+..+++.+-+ .+...|+||
T Consensus 151 ~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~---~-~~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is 226 (266)
T PRK08811 151 GLLAPTLQQRGARILRADVYQRVPLRLRASTLAALS---R-AAPRSVLALSSAEALTLILQQLPDALRRALQQRPVVASS 226 (266)
T ss_pred HHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHH---H-hCCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeC
Confidence 357899999999998763 223222222222222 1 234455666766665555544322 355667776
Q ss_pred CCC
Q 045172 134 DMS 136 (157)
Q Consensus 134 d~~ 136 (157)
..+
T Consensus 227 ~rt 229 (266)
T PRK08811 227 DRL 229 (266)
T ss_pred HHH
Confidence 653
No 441
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=47.55 E-value=30 Score=35.05 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=35.5
Q ss_pred cCcceEEEEcCCcc-----hHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 101 RRFGCLVVVSDDSD-----FVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsD-----F~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
...+||+++..|.- ....+..|+++|.+.|||--. .......||+|++
T Consensus 220 ~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR-~t~tA~~AD~~l~ 272 (1009)
T TIGR01553 220 KNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPR-FNRTATVADLYAP 272 (1009)
T ss_pred HhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCC-CCchhHhhccEeC
Confidence 35799999987743 223456789999999999443 3466789999984
No 442
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.50 E-value=86 Score=28.26 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=44.5
Q ss_pred hhcCcccCCCc-----HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCC------cchHHHHHHHH
Q 045172 55 AILTPKVGYGF-----ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDD------SDFVEVFQEAT 123 (157)
Q Consensus 55 ~~l~pkvgygl-----a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDD------sDF~~~lr~Ar 123 (157)
.|++|...||- ...+++.|+.|..|+.. |. .++.+.+ +.+...+++.|-. .|...+.+.|+
T Consensus 105 ~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~----d~---e~l~~ai-~~~tklV~l~sp~NPtG~v~di~~I~~la~ 176 (431)
T PRK08248 105 EIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS----DP---ENFEAAI-TDKTKALFAETIGNPKGDVLDIEAVAAIAH 176 (431)
T ss_pred EEEEccCchhhHHHHHHHHHHhCCEEEEEECCC----CH---HHHHHhc-CCCCeEEEEECCCCCCCcccCHHHHHHHHH
Confidence 47777777763 34578899999998642 22 1233444 3456666665433 47889999999
Q ss_pred HcCCeEE
Q 045172 124 LRWLKMV 130 (157)
Q Consensus 124 er~l~tV 130 (157)
+.|+-+|
T Consensus 177 ~~gi~vI 183 (431)
T PRK08248 177 EHGIPLI 183 (431)
T ss_pred HcCCEEE
Confidence 9986443
No 443
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=47.44 E-value=36 Score=28.47 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=36.0
Q ss_pred CcceEEEEcCCc-----chHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccc
Q 045172 102 RFGCLVVVSDDS-----DFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFS 149 (157)
Q Consensus 102 ~v~clvLVSDDs-----DF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fs 149 (157)
..++|+++-.|. .+..-++.|+++|.+.|+|+-. ...+...||.|++
T Consensus 156 ~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~-~s~t~~~ad~~i~ 207 (374)
T cd00368 156 NADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPR-RTETAAKADEWLP 207 (374)
T ss_pred hCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCC-CCcchHhhCEeeC
Confidence 569999998765 3456678888899999999876 2355778999873
No 444
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=47.43 E-value=21 Score=32.17 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=31.9
Q ss_pred cceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 103 FGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 103 v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.++++.+.|-.|+..+++.|++.++...|+|.++
T Consensus 33 A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGS 66 (363)
T PRK13903 33 ARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGS 66 (363)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCe
Confidence 4889999999999999999999999999999985
No 445
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=47.28 E-value=56 Score=28.01 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=42.2
Q ss_pred CcHHHHHhhceEEEEecC-CCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 64 GFADELKRAWFWVRMVLV-KPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~d-kpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
|++..|+..|+.|....- .|...|.. ..+. -+.. +.+.|++.++..+...+++.|++.|+..
T Consensus 167 ~~~~~~~~~gi~v~~~~~~~~~~~d~~--~~l~-~ik~-~~~vIi~~~~~~~~~~i~~qa~~~g~~~ 229 (399)
T cd06384 167 GVFLALQEENANVSAHPYHIEKNSDII--EIIQ-FIKQ-NGRIVYICGPLETFLEIMLQAQREGLTP 229 (399)
T ss_pred HHHHHHHhcCceEEEEEEeccchhhHH--HHHH-HHhh-cccEEEEeCCchHHHHHHHHHHHcCCCC
Confidence 577888888977664321 23344442 2222 2323 7788888899999999999999988865
No 446
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=47.16 E-value=52 Score=24.73 Aligned_cols=45 Identities=16% Similarity=-0.110 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcC
Q 045172 86 ADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGD 134 (157)
Q Consensus 86 AD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd 134 (157)
+|-....++++-+ +...+-.+.| +|+ ..=++-|+..|+++|.|++
T Consensus 143 P~p~~~~~~~~~~-~~~~~~~l~i-gDs--~~di~aA~~aG~~~i~~~~ 187 (188)
T PRK10725 143 PAPDTFLRCAQLM-GVQPTQCVVF-EDA--DFGIQAARAAGMDAVDVRL 187 (188)
T ss_pred CChHHHHHHHHHc-CCCHHHeEEE-ecc--HhhHHHHHHCCCEEEeecC
Confidence 3355666666666 3333333345 666 4446889999999999986
No 447
>PRK12361 hypothetical protein; Provisional
Probab=47.12 E-value=87 Score=28.84 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=50.1
Q ss_pred HhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEc-CCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcc
Q 045172 70 KRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVS-DDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAF 147 (157)
Q Consensus 70 rRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS-DDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~ 147 (157)
++.-+.+++.+.+-++.+ .+.++.+.+. .+++.-+..+ .+.+-..+.+++.+.+..+|||..+ |+.+...++.-
T Consensus 243 ~~~~iI~NP~SG~g~~~~--~~~~i~~~L~-~~~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GG-DGTl~ev~~~l 317 (547)
T PRK12361 243 KRAWLIANPVSGGGKWQE--YGEQIQRELK-AYFDLTVKLTTPEISAEALAKQARKAGADIVIACGG-DGTVTEVASEL 317 (547)
T ss_pred CceEEEECCCCCCCcHHH--HHHHHHHHHh-cCCceEEEECCCCccHHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHH
Confidence 467788888777655433 3567777774 4466544444 3456788888888888888887766 67788777643
No 448
>PRK07324 transaminase; Validated
Probab=46.96 E-value=37 Score=29.10 Aligned_cols=75 Identities=15% Similarity=0.056 Sum_probs=46.8
Q ss_pred hhcCcccCCC-cHHHHHhhceEEEEecCCCc---cHHHHHHHHHHHHhhccCcceEEEEc---------CCcchHHHHHH
Q 045172 55 AILTPKVGYG-FADELKRAWFWVRMVLVKPQ---DADVLLRNYMVAMVDKRRFGCLVVVS---------DDSDFVEVFQE 121 (157)
Q Consensus 55 ~~l~pkvgyg-la~eLrRAGv~V~~V~dkpq---AAD~AL~~~~~~~~~~r~v~clvLVS---------DDsDF~~~lr~ 121 (157)
.|++|.-+|. ....++..|..|..|+-.++ ..|.. .+.+.+ +.+...+++-+ +.++...+++.
T Consensus 106 ~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~---~l~~~~-~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~ 181 (373)
T PRK07324 106 HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLD---ELRRLV-RPNTKLICINNANNPTGALMDRAYLEEIVEI 181 (373)
T ss_pred EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHH---HHHHhC-CCCCcEEEEeCCCCCCCCCCCHHHHHHHHHH
Confidence 4677777785 44567899999999876553 23432 223333 34555544433 44457888999
Q ss_pred HHHcCCeEEEEcCC
Q 045172 122 ATLRWLKMVVVGDM 135 (157)
Q Consensus 122 Arer~l~tVVVGd~ 135 (157)
|++.|+ ++|-|.
T Consensus 182 a~~~~~--~ii~De 193 (373)
T PRK07324 182 ARSVDA--YVLSDE 193 (373)
T ss_pred HHHCCC--EEEEEc
Confidence 999875 555575
No 449
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=46.91 E-value=40 Score=27.85 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHhhcCcccC-----CCcHHHHHhhceEEEEecCCCc
Q 045172 42 YSIKMEKNKMAASAILTPKVG-----YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 42 ~~~k~~kY~~Aar~~l~pkvg-----ygla~eLrRAGv~V~~V~dkpq 84 (157)
++..+..|.. ++|..| -.|+..|++-||-|.+..|...
T Consensus 12 lII~n~~f~~-----~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~ 54 (241)
T smart00115 12 LIINNENFHS-----LPRRNGTDVDAENLTELFQSLGYEVHVKNNLTA 54 (241)
T ss_pred EEEECccCCC-----CcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCH
Confidence 3445566643 455544 6799999999999999888765
No 450
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=46.90 E-value=30 Score=33.14 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=34.1
Q ss_pred cCcceEEEEcCCcc-------------hHHHHHHHHHcCCeEEEEcCCCchHHHhh-hhcccc
Q 045172 101 RRFGCLVVVSDDSD-------------FVEVFQEATLRWLKMVVVGDMSDGALKRI-ANAFFS 149 (157)
Q Consensus 101 r~v~clvLVSDDsD-------------F~~~lr~Arer~l~tVVVGd~~~~~L~r~-AD~~fs 149 (157)
...+||+++..+.- ....++.|+++|.+.|||-=.- ...... ||.|++
T Consensus 166 ~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~-t~tA~~aaD~~l~ 227 (770)
T TIGR00509 166 ENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVR-TETAEFFGAEWIP 227 (770)
T ss_pred hcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCC-CcchhhccCeEeC
Confidence 36799999987742 3367788999999999996551 233454 589874
No 451
>PRK00861 putative lipid kinase; Reviewed
Probab=46.70 E-value=93 Score=26.02 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=26.9
Q ss_pred HHHHHHhhccCcceEEEEc-CCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhc
Q 045172 92 NYMVAMVDKRRFGCLVVVS-DDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANA 146 (157)
Q Consensus 92 ~~~~~~~~~r~v~clvLVS-DDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~ 146 (157)
..+...+. .++++-+.++ .+.+-..+.+.+.+.+..+||+..+ |+.+...++.
T Consensus 23 ~~i~~~l~-~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GG-DGTl~evv~~ 76 (300)
T PRK00861 23 ALIRAILE-PEMDLDIYLTTPEIGADQLAQEAIERGAELIIASGG-DGTLSAVAGA 76 (300)
T ss_pred HHHHHHHH-hcCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECC-hHHHHHHHHH
Confidence 34444443 2345433333 3334556666666666666655555 4556655554
No 452
>PRK08508 biotin synthase; Provisional
Probab=46.66 E-value=77 Score=26.80 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccchhhh
Q 045172 88 VLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSWSDL 153 (157)
Q Consensus 88 ~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW~ev 153 (157)
.-...++...+...+.+.-+..|.-.--.+.++..++.|+..+-++..+...+-..-.-.-+|+++
T Consensus 74 ~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~ 139 (279)
T PRK08508 74 LEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEER 139 (279)
T ss_pred HHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHH
Confidence 334444444552232232223343333466777777788877777766433332222223456654
No 453
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=46.56 E-value=39 Score=25.88 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=27.4
Q ss_pred CcceEEEEcCCcchHHHHHHHHHcCCeEEEEc-----CCCchHHHhhhh
Q 045172 102 RFGCLVVVSDDSDFVEVFQEATLRWLKMVVVG-----DMSDGALKRIAN 145 (157)
Q Consensus 102 ~v~clvLVSDDsDF~~~lr~Arer~l~tVVVG-----d~~~~~L~r~AD 145 (157)
.+.++..-....++..+.+..++.++..+||| |++.+.....+.
T Consensus 24 pl~~i~~~~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~ 72 (130)
T TIGR00250 24 GIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQ 72 (130)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHH
Confidence 34444443345667777778888888888888 775444333333
No 454
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=46.49 E-value=1.2e+02 Score=24.97 Aligned_cols=81 Identities=19% Similarity=0.077 Sum_probs=53.4
Q ss_pred HHHHhhceEEEEecCC--------CccHHHHHHHHHHHHhhccCc-ceEEEEcCC-----cch----HHHHHHHHH-cC-
Q 045172 67 DELKRAWFWVRMVLVK--------PQDADVLLRNYMVAMVDKRRF-GCLVVVSDD-----SDF----VEVFQEATL-RW- 126 (157)
Q Consensus 67 ~eLrRAGv~V~~V~dk--------pqAAD~AL~~~~~~~~~~r~v-~clvLVSDD-----sDF----~~~lr~Are-r~- 126 (157)
..|.++|+.+-+|+.. |+++=..+-+.|+..+-+.|+ =+-+|.+-+ ++. .+|+..+-+ .+
T Consensus 41 ~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~i 120 (181)
T COG0241 41 LKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNI 120 (181)
T ss_pred HHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCC
Confidence 4678999999999762 445555666778888877885 122333321 222 345555444 45
Q ss_pred --CeEEEEcCC-CchHHHhhhhcc
Q 045172 127 --LKMVVVGDM-SDGALKRIANAF 147 (157)
Q Consensus 127 --l~tVVVGd~-~~~~L~r~AD~~ 147 (157)
-++++|||. +|-.+..+|.+.
T Consensus 121 D~~~s~~VGD~~~Dlq~a~n~gi~ 144 (181)
T COG0241 121 DLSRSYVVGDRLTDLQAAENAGIK 144 (181)
T ss_pred CccceEEecCcHHHHHHHHHCCCC
Confidence 689999999 777888877765
No 455
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=46.44 E-value=1.5e+02 Score=23.60 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=47.6
Q ss_pred eEEEEecCCCc----cHHHHHHHHHHHHhhccCcceEEEEc------CCcchHHHHHHHHHcCC-eEEEEcCC--CchHH
Q 045172 74 FWVRMVLVKPQ----DADVLLRNYMVAMVDKRRFGCLVVVS------DDSDFVEVFQEATLRWL-KMVVVGDM--SDGAL 140 (157)
Q Consensus 74 v~V~~V~dkpq----AAD~AL~~~~~~~~~~r~v~clvLVS------DDsDF~~~lr~Arer~l-~tVVVGd~--~~~~L 140 (157)
+-+.-+++.+. .+...+.......+....-+++|+.. |..+|+..+......|- =+.+||.. .+.++
T Consensus 32 ~ei~el~~~~~~~~~~~~~~~~~E~~~il~~~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGGa~G~~~~v 111 (153)
T TIGR00246 32 FELIEIPAGKRGKNADIKRILDKEGDRILAAIGKAHVVTLDIPGKPWTTPQLADTLEKWKTDGRDVTLLIGGPEGLSPTC 111 (153)
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHHHhCCCCeEEEEcCCCCcCCHHHHHHHHHHHhccCCeEEEEEcCCCcCCHHH
Confidence 33445566552 22344444444444333325555443 45689999999887774 36788875 45788
Q ss_pred Hhhhhcccchhh
Q 045172 141 KRIANAFFSWSD 152 (157)
Q Consensus 141 ~r~AD~~fsW~e 152 (157)
..-||.-+|-..
T Consensus 112 ~~~a~~~lSLS~ 123 (153)
T TIGR00246 112 KAAAEQSWSLSK 123 (153)
T ss_pred HHhcCceEEeec
Confidence 888998777543
No 456
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=46.43 E-value=46 Score=25.33 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=25.4
Q ss_pred ceEEEEcCCc---chHH---HHHHHHHc--CCeEEEEcCC-CchHHHhhhhc
Q 045172 104 GCLVVVSDDS---DFVE---VFQEATLR--WLKMVVVGDM-SDGALKRIANA 146 (157)
Q Consensus 104 ~clvLVSDDs---DF~~---~lr~Arer--~l~tVVVGd~-~~~~L~r~AD~ 146 (157)
..++|+||=. +... .++.+.+. .+.+|.||.. +...|...|+-
T Consensus 109 ~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 109 PWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred cEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 4899999833 3443 34555543 3445667754 44667777763
No 457
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=46.36 E-value=79 Score=32.15 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCeEEEEcCC-CchHHHhhhhcccc
Q 045172 116 VEVFQEATLRWLKMVVVGDM-SDGALKRIANAFFS 149 (157)
Q Consensus 116 ~~~lr~Arer~l~tVVVGd~-~~~~L~r~AD~~fs 149 (157)
..+++..+++|-.+..+||+ +|-.-=+.||+.++
T Consensus 735 ~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIA 769 (1053)
T TIGR01523 735 VKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIA 769 (1053)
T ss_pred HHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEe
Confidence 35788888899999999999 76555568999885
No 458
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=46.32 E-value=1.1e+02 Score=22.24 Aligned_cols=40 Identities=10% Similarity=-0.088 Sum_probs=23.3
Q ss_pred HHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCe-EEEEcCC
Q 045172 94 MVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLK-MVVVGDM 135 (157)
Q Consensus 94 ~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~-tVVVGd~ 135 (157)
+...+-+.|+.|.+-.+ ..+..-++.|...|.. +++||+.
T Consensus 47 la~~LR~~gi~v~~d~~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 47 ISEELRELGFSVKYDDS--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred HHHHHHHCCCEEEEeCC--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 33334345666655544 4677777777777776 4445654
No 459
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=46.31 E-value=82 Score=25.20 Aligned_cols=64 Identities=23% Similarity=0.166 Sum_probs=43.5
Q ss_pred cHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEc-CC---cchHHHHHHHHHcCC--e-EEEEcCC
Q 045172 65 FADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVS-DD---SDFVEVFQEATLRWL--K-MVVVGDM 135 (157)
Q Consensus 65 la~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVS-DD---sDF~~~lr~Arer~l--~-tVVVGd~ 135 (157)
++.-|+++|+.|.-. ++.|. .++.+.+...+.+.++|-+ .. .++..+++..|+.+. . .|+||..
T Consensus 102 v~~~l~~~G~~vi~lG~~~p~-------~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 102 VATMLEANGFEVIDLGRDVPP-------EEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred HHHHHHHCCCEEEECCCCCCH-------HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECC
Confidence 467899999999644 45554 3455556577888777654 22 346677788888876 3 4777776
No 460
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=46.25 E-value=98 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=26.4
Q ss_pred CcceEEEEcCCcc------hHHHHHHHHHcCCeEEEEcCC
Q 045172 102 RFGCLVVVSDDSD------FVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 102 ~v~clvLVSDDsD------F~~~lr~Arer~l~tVVVGd~ 135 (157)
+-..|||+||--| +..+++.+.+.++....||-+
T Consensus 164 ~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~ 203 (296)
T TIGR03436 164 GRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDAR 203 (296)
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccC
Confidence 3467999997543 667888899999998888754
No 461
>PRK07050 cystathionine beta-lyase; Provisional
Probab=46.24 E-value=74 Score=28.08 Aligned_cols=71 Identities=14% Similarity=0.077 Sum_probs=44.4
Q ss_pred hhcCcccCCCcH-----HHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--Ec----CCcchHHHHHHHH
Q 045172 55 AILTPKVGYGFA-----DELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VS----DDSDFVEVFQEAT 123 (157)
Q Consensus 55 ~~l~pkvgygla-----~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VS----DDsDF~~~lr~Ar 123 (157)
+|++|...|+-- ..+++.|+.|..++..+. .+ +.+.+ +.+...|++ .+ +-.|+..+.+.|+
T Consensus 106 ~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~---~~----l~~~i-~~~tklV~le~p~Np~~~~~di~~I~~ia~ 177 (394)
T PRK07050 106 DVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIG---AG----IADLI-QPNTRLIWLEAPGSVTMEVPDVPAITAAAR 177 (394)
T ss_pred EEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCH---HH----HHHhc-CCCCeEEEEECCCCCCccHhhHHHHHHHHH
Confidence 577778888843 246888999999863321 12 23334 334444443 23 3448889999999
Q ss_pred HcCCeEEEEcCC
Q 045172 124 LRWLKMVVVGDM 135 (157)
Q Consensus 124 er~l~tVVVGd~ 135 (157)
+.|+-+|+ |.
T Consensus 178 ~~gi~liv--D~ 187 (394)
T PRK07050 178 ARGVVTAI--DN 187 (394)
T ss_pred HcCCEEEE--EC
Confidence 99875544 65
No 462
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=46.19 E-value=13 Score=27.34 Aligned_cols=72 Identities=17% Similarity=-0.003 Sum_probs=44.1
Q ss_pred CcHHHHHhhceEEEEecCCCc--cHHHHHHHHHHHHhhc---cCcceEEEEcC---------CcchHHHHHHHHHcCCeE
Q 045172 64 GFADELKRAWFWVRMVLVKPQ--DADVLLRNYMVAMVDK---RRFGCLVVVSD---------DSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 64 gla~eLrRAGv~V~~V~dkpq--AAD~AL~~~~~~~~~~---r~v~clvLVSD---------DsDF~~~lr~Arer~l~t 129 (157)
++.+.|+.||+.|.+|+...+ ..+..+.-.....++. ...|.|++.+- +.++.+.|+.+.++|-..
T Consensus 19 ~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I 98 (142)
T cd03132 19 ALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPI 98 (142)
T ss_pred HHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeE
Confidence 567889999999999987654 1111111111111211 13578888764 345667788888888766
Q ss_pred EEEcCC
Q 045172 130 VVVGDM 135 (157)
Q Consensus 130 VVVGd~ 135 (157)
..|+.+
T Consensus 99 ~aic~G 104 (142)
T cd03132 99 GAVGEG 104 (142)
T ss_pred EEcCch
Confidence 666665
No 463
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=46.12 E-value=23 Score=30.79 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=31.5
Q ss_pred cceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 103 FGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 103 v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.++++..+|-.|...+++.|++.++..+++|.+|
T Consensus 36 a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGS 69 (302)
T PRK14652 36 ADLLVRPADPDALSALLRAVRELGVPLSILGGGA 69 (302)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCc
Confidence 4889999999999999999999999999999985
No 464
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=45.99 E-value=48 Score=23.58 Aligned_cols=54 Identities=9% Similarity=-0.046 Sum_probs=32.9
Q ss_pred ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCC
Q 045172 73 WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 73 Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~ 135 (157)
|--|-+..|.++ ++..+...++.|++|+.+..-=.+++++|++.|+-.+.+...
T Consensus 41 ~~lvIt~gdR~d---------i~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~d 94 (105)
T PF07085_consen 41 GDLVITPGDRED---------IQLAAIEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYD 94 (105)
T ss_dssp TEEEEEETT-HH---------HHHHHCCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-
T ss_pred CeEEEEeCCcHH---------HHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCC
Confidence 666666666655 223333577999999988877788999999999666655544
No 465
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=45.97 E-value=58 Score=26.62 Aligned_cols=48 Identities=8% Similarity=0.125 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhccCcceEEEEcCC--cchHHHHHHHHHcCCeEEEEcCC
Q 045172 88 VLLRNYMVAMVDKRRFGCLVVVSDD--SDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 88 ~AL~~~~~~~~~~r~v~clvLVSDD--sDF~~~lr~Arer~l~tVVVGd~ 135 (157)
..+.+++.+++.+..-+.++-++.+ ..|.+-|+.|.+||++.+++-.+
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPPEFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 4577888888854444444444332 23566778888999998887665
No 466
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=45.93 E-value=1.3e+02 Score=26.29 Aligned_cols=69 Identities=10% Similarity=-0.056 Sum_probs=45.8
Q ss_pred EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCchHHHhh
Q 045172 75 WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSDGALKRI 143 (157)
Q Consensus 75 ~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~~~L~r~ 143 (157)
.|-.|.++......-+..++.+.+...|+++.+. |..++++. ..++.+++.+...|| ||.++.......
T Consensus 25 r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ 99 (375)
T cd08179 25 KAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKA 99 (375)
T ss_pred eEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHH
Confidence 3455677766555667788888887678887654 44467666 557777887776554 888865444444
No 467
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=45.93 E-value=89 Score=22.29 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHhhcc--CcceEEEEcCCcch---HHHHHHHHHcCCeEEEEcCCC
Q 045172 93 YMVAMVDKR--RFGCLVVVSDDSDF---VEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 93 ~~~~~~~~r--~v~clvLVSDDsDF---~~~lr~Arer~l~tVVVGd~~ 136 (157)
.+.+++.+. .-..|||+||-.+- ...++.++..|++..+||-+.
T Consensus 88 ~a~~~~~~~~~~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~ 136 (172)
T PF13519_consen 88 EAAKMLASSDNRRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGS 136 (172)
T ss_dssp HHHHHHHC-SSEEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-
T ss_pred HHHHHHHhCCCCceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECC
Confidence 333444332 35689999996543 367888888998887777663
No 468
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=45.90 E-value=1.1e+02 Score=24.50 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=21.4
Q ss_pred cCcccC-CCcHHHHHhhceEEEEecCCCc
Q 045172 57 LTPKVG-YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 57 l~pkvg-ygla~eLrRAGv~V~~V~dkpq 84 (157)
+.|.-| -.+-..|+..|+.+-.++.+|.
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~ 120 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHP 120 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCH
Confidence 455555 5677889999999999988765
No 469
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.84 E-value=1.4e+02 Score=23.12 Aligned_cols=66 Identities=8% Similarity=-0.093 Sum_probs=37.1
Q ss_pred HHHHHhh-ceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC-eEEEEc
Q 045172 66 ADELKRA-WFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL-KMVVVG 133 (157)
Q Consensus 66 a~eLrRA-Gv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l-~tVVVG 133 (157)
-..|... |+.+...+... ..+.+ ...+.+++....-...+++++|.-...+++.+++.|+ ...|||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~di~vvg 210 (267)
T cd06322 143 KEALADYPNIKIVAVQPGI-TRAEA-LTAAQNILQANPDLDGIFAFGDDAALGAVSAIKAAGRDNVKVIG 210 (267)
T ss_pred HHHHHhCCCcEEEEecCCC-ChHHH-HHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHHHHCCCCCeEEEE
Confidence 3445555 66554332222 22333 3345566633222346777778888899999999887 334444
No 470
>PRK06225 aspartate aminotransferase; Provisional
Probab=45.66 E-value=48 Score=28.13 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=46.8
Q ss_pred hhcCcccCCCcHH-HHHhhceEEEEecCC--Cc--cHHHHHHHHHHHHhhccCcceEEEEcC---------CcchHHHHH
Q 045172 55 AILTPKVGYGFAD-ELKRAWFWVRMVLVK--PQ--DADVLLRNYMVAMVDKRRFGCLVVVSD---------DSDFVEVFQ 120 (157)
Q Consensus 55 ~~l~pkvgygla~-eLrRAGv~V~~V~dk--pq--AAD~AL~~~~~~~~~~r~v~clvLVSD---------DsDF~~~lr 120 (157)
.+++|.-+|.... .+.+.|..|..|+.. ++ ..|.. .+.+.+ +.+...++|++- .++...+++
T Consensus 109 ~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~---~l~~~~-~~~~~~v~l~~p~NptG~~~~~~~~~~i~~ 184 (380)
T PRK06225 109 NAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPE---LVKENM-DENTRLIYLIDPLNPLGSSYTEEEIKEFAE 184 (380)
T ss_pred EEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHH---HHHhhc-CCCceEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 4777777887664 467899999988732 21 23332 233344 345666666643 235778889
Q ss_pred HHHHcCCeEEEEcCC
Q 045172 121 EATLRWLKMVVVGDM 135 (157)
Q Consensus 121 ~Arer~l~tVVVGd~ 135 (157)
.|++.|+ ++|=|.
T Consensus 185 ~a~~~~~--~ii~De 197 (380)
T PRK06225 185 IARDNDA--FLLHDC 197 (380)
T ss_pred HHHHCCc--EEEEeh
Confidence 9988875 445554
No 471
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=45.61 E-value=1e+02 Score=27.55 Aligned_cols=76 Identities=16% Similarity=-0.004 Sum_probs=47.8
Q ss_pred cHHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeE-EEEcCCCc
Q 045172 65 FADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKM-VVVGDMSD 137 (157)
Q Consensus 65 la~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~t-VVVGd~~~ 137 (157)
|..+|++-|. .|-.|.|+ ......+..++.+.+...|+++.+. |.-++... ..++.+++.+... |.||.++.
T Consensus 14 l~~~l~~~g~~~vlivt~~-~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 14 VGMDLKNLGARRVCLVTDP-NLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred HHHHHHHcCCCeEEEEECc-chhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 4566777663 45555663 3444556778888887778887765 34455554 5667778877654 45777755
Q ss_pred hHHH
Q 045172 138 GALK 141 (157)
Q Consensus 138 ~~L~ 141 (157)
....
T Consensus 93 iD~A 96 (414)
T cd08190 93 IDTA 96 (414)
T ss_pred HHHH
Confidence 4443
No 472
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=45.46 E-value=1.4e+02 Score=23.20 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=22.3
Q ss_pred HHHHHHhhcc-CcceEEEEcCCcchHHHHHHHHHcCCe
Q 045172 92 NYMVAMVDKR-RFGCLVVVSDDSDFVEVFQEATLRWLK 128 (157)
Q Consensus 92 ~~~~~~~~~r-~v~clvLVSDDsDF~~~lr~Arer~l~ 128 (157)
..+.+++... .++ .|++++|.--.++++.++++|+.
T Consensus 172 ~~~~~~l~~~~~~~-ai~~~~d~~a~~~~~~l~~~g~~ 208 (272)
T cd06301 172 DLMENWLSSGGKID-AVVANNDEMALGAIMALKAAGKS 208 (272)
T ss_pred HHHHHHHHhCCCCC-EEEECCCchHHHHHHHHHHcCCC
Confidence 4445555322 244 34555565666899999999884
No 473
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.27 E-value=1.4e+02 Score=23.12 Aligned_cols=23 Identities=4% Similarity=-0.130 Sum_probs=18.4
Q ss_pred eEEEEcCCcchHHHHHHHHHcCC
Q 045172 105 CLVVVSDDSDFVEVFQEATLRWL 127 (157)
Q Consensus 105 clvLVSDDsDF~~~lr~Arer~l 127 (157)
..+..++|.-...+++.+++.|.
T Consensus 185 ~~i~~~~d~~a~g~~~~l~~~g~ 207 (273)
T cd06310 185 KGIFGANEGSAVGAARAVRQAGK 207 (273)
T ss_pred eEEEecCchhHHHHHHHHHhcCC
Confidence 45666677888889999999888
No 474
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=45.25 E-value=40 Score=31.85 Aligned_cols=48 Identities=15% Similarity=0.079 Sum_probs=39.5
Q ss_pred cceEEEEcCC---cchHHHHHHHHHcCCeEEEEcCCCchHHHhhhhcccch
Q 045172 103 FGCLVVVSDD---SDFVEVFQEATLRWLKMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 103 v~clvLVSDD---sDF~~~lr~Arer~l~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
=+.++.||-. .|-...++.|+++|.+||.|-...+..|.+.||.-+..
T Consensus 370 ~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~ 420 (640)
T PTZ00295 370 DAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYL 420 (640)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEe
Confidence 3677888744 46777889999999999999887678999999998764
No 475
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=45.17 E-value=29 Score=26.10 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 111 DDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 111 DDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
+.+|+..++.+|++.+...||||-+.
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECChH
Confidence 89999999999999999999999763
No 476
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=45.10 E-value=1.1e+02 Score=23.50 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=42.7
Q ss_pred HHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCC--eEEEEcCCCchHHHhhhhcccch
Q 045172 90 LRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWL--KMVVVGDMSDGALKRIANAFFSW 150 (157)
Q Consensus 90 L~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l--~tVVVGd~~~~~L~r~AD~~fsW 150 (157)
+..+. +-+.++|+.-++-||-|+-|+ ..+.+.+.++ ..-+++|. ++.+.+.-++.++.
T Consensus 53 ~~~~~-~~f~~~g~~~V~~iS~D~~~~-~~~~~~~~~~~~~f~lLsD~-~~~~~~~ygv~~~~ 112 (155)
T cd03013 53 YVENA-DELKAKGVDEVICVSVNDPFV-MKAWGKALGAKDKIRFLADG-NGEFTKALGLTLDL 112 (155)
T ss_pred HHHhH-HHHHHCCCCEEEEEECCCHHH-HHHHHHhhCCCCcEEEEECC-CHHHHHHcCCCccc
Confidence 44444 444367887788899999997 6667777887 78899997 48888887776643
No 477
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=45.02 E-value=27 Score=30.23 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=36.0
Q ss_pred cCCCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcC
Q 045172 61 VGYGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD 111 (157)
Q Consensus 61 vgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD 111 (157)
.|+.+..+|-.+|+..-++.+-.+- .+++++.....|+.|+|+|.+
T Consensus 21 ~~~~iv~~LW~~gIsAd~~~~~~~S-----~Eel~~~~~~~gi~wiViikq 66 (273)
T PF12745_consen 21 EGIEIVQELWAAGISADLMYDASPS-----QEELQSYCREDGISWIVIIKQ 66 (273)
T ss_pred HHHHHHHHHHHCCCceEeccccCCC-----HHHHHHHHHHCCCCEEEEEec
Confidence 5688899999999999997765432 344555555789999999999
No 478
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=44.94 E-value=99 Score=25.45 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=47.6
Q ss_pred cHHHHHhhceEEEEe-cCCCccHHHHHHHHHHHHhhccCcceEEEEcC----CcchHHHHHHHHHcCCeE-EEEcCC-Cc
Q 045172 65 FADELKRAWFWVRMV-LVKPQDADVLLRNYMVAMVDKRRFGCLVVVSD----DSDFVEVFQEATLRWLKM-VVVGDM-SD 137 (157)
Q Consensus 65 la~eLrRAGv~V~~V-~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSD----DsDF~~~lr~Arer~l~t-VVVGd~-~~ 137 (157)
++.-|+++||.|.-. .+-|. .++.+.+...+.+.++|=+- -.++..+++..++.|.++ |+||.. ..
T Consensus 108 v~~~l~~~G~~Vi~LG~~vp~-------e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~ 180 (213)
T cd02069 108 VGVILSNNGYEVIDLGVMVPI-------EKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATS 180 (213)
T ss_pred HHHHHHhCCCEEEECCCCCCH-------HHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChhcC
Confidence 467899999999887 45665 45566666778888877433 346677788888877644 345554 33
Q ss_pred hHHHh
Q 045172 138 GALKR 142 (157)
Q Consensus 138 ~~L~r 142 (157)
..+..
T Consensus 181 ~~~~~ 185 (213)
T cd02069 181 RKHTA 185 (213)
T ss_pred HHHHh
Confidence 55554
No 479
>PRK05764 aspartate aminotransferase; Provisional
Probab=44.93 E-value=68 Score=27.15 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=45.7
Q ss_pred hhcCcccCCC-cHHHHHhhceEEEEecCCCc---cHHHHHHHHHHHHhhccCcceEEEEcC---------CcchHHHHHH
Q 045172 55 AILTPKVGYG-FADELKRAWFWVRMVLVKPQ---DADVLLRNYMVAMVDKRRFGCLVVVSD---------DSDFVEVFQE 121 (157)
Q Consensus 55 ~~l~pkvgyg-la~eLrRAGv~V~~V~dkpq---AAD~AL~~~~~~~~~~r~v~clvLVSD---------DsDF~~~lr~ 121 (157)
.|++|.-+|+ ....++..|..+..|+..|. ..|.. .+.+.+ +.+...+++++- .+++..+++.
T Consensus 117 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~---~l~~~l-~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~ 192 (393)
T PRK05764 117 EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVE---QLEAAI-TPKTKALILNSPSNPTGAVYSPEELEAIADV 192 (393)
T ss_pred EEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHH---HHHHhh-CccceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 4677777775 44556888999998876542 22332 223334 346666665432 2467889999
Q ss_pred HHHcCCeEEEEcCC
Q 045172 122 ATLRWLKMVVVGDM 135 (157)
Q Consensus 122 Arer~l~tVVVGd~ 135 (157)
|++.|+- +|=|.
T Consensus 193 a~~~~~~--ii~De 204 (393)
T PRK05764 193 AVEHDIW--VLSDE 204 (393)
T ss_pred HHHCCcE--EEEec
Confidence 9998853 33354
No 480
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=44.75 E-value=98 Score=21.00 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=42.4
Q ss_pred EEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEE-EEcCC
Q 045172 75 WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMV-VVGDM 135 (157)
Q Consensus 75 ~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tV-VVGd~ 135 (157)
.|-++.++ +..-..+..++.+.|.+.|+.+.+=- .+..+..-++.|...|...+ +||+.
T Consensus 3 ~Ii~~~~~-~~~~~~~a~~l~~~L~~~gi~v~~d~-~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 3 VIIPVGKK-DEEIIEYAQELANKLRKAGIRVELDD-SDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp EEEESSCS-HHHHHHHHHHHHHHHHHTTSEEEEES-SSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred EEEEeCCC-cHHHHHHHHHHHHHHHHCCCEEEEEC-CCCchhHHHHHHhhcCCeEEEEECch
Confidence 44454444 32334566777788878888877777 88899999999999999865 55653
No 481
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.62 E-value=58 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.003 Sum_probs=34.4
Q ss_pred CCcHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCc
Q 045172 63 YGFADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDS 113 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDs 113 (157)
+.++.+||.+|+.|.+-.. -.+.+++..+- ..|+..+++|.++.
T Consensus 45 ~~la~~LR~~gi~v~~d~~------~sl~kqlk~A~-k~g~~~~iiiG~~e 88 (121)
T cd00858 45 KEISEELRELGFSVKYDDS------GSIGRRYARQD-EIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHHHHCCCEEEEeCC------CCHHHHHHHhH-hcCCCEEEEECcCc
Confidence 4678999999999988322 25777777765 79999999999763
No 482
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=44.60 E-value=67 Score=26.27 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=33.6
Q ss_pred CCCcc--HHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEc
Q 045172 81 VKPQD--ADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVG 133 (157)
Q Consensus 81 dkpqA--AD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVG 133 (157)
+||-. ++.-+..|..+.+...+++.+++|+|+.+... .+...|+..+..+
T Consensus 15 ~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~~~i~~---~~~~~g~~~v~~~ 66 (238)
T TIGR00466 15 GKPLEDIFGKPMIVHVAENANESGADRCIVATDDESVAQ---TCQKFGIEVCMTS 66 (238)
T ss_pred CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCHHHHHH---HHHHcCCEEEEeC
Confidence 44442 45557888888776567999999998866443 3445688766544
No 483
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=44.54 E-value=25 Score=30.14 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=30.8
Q ss_pred cceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCC
Q 045172 103 FGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 103 v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~ 136 (157)
.+.++.+++-.|...+++.|++.++..+|+|.++
T Consensus 13 a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGS 46 (284)
T TIGR00179 13 ARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGS 46 (284)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecce
Confidence 3678889999999999999999999999999885
No 484
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=44.30 E-value=1.2e+02 Score=23.71 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=54.7
Q ss_pred CcccCCCcHHHHHhhceEEEEecCC-------CccHHHHHHHHHHHHhhccCcceEEEEcCCcch-----HHHHHHHHHc
Q 045172 58 TPKVGYGFADELKRAWFWVRMVLVK-------PQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDF-----VEVFQEATLR 125 (157)
Q Consensus 58 ~pkvgygla~eLrRAGv~V~~V~dk-------pqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF-----~~~lr~Arer 125 (157)
.|.|.-.|. +|...|+.+-+|+-- +...-..+.+.|..++...++...|+++-..|. ++|+..+-+.
T Consensus 31 ~~~v~~~L~-~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~ 109 (159)
T PF08645_consen 31 PPGVPEALR-ELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFALKD 109 (159)
T ss_dssp -TTHHHHHH-HHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHHCCC
T ss_pred chhHHHHHH-HHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHHHHh
Confidence 344444444 668899999998533 345667888999999989999999999977763 5788777764
Q ss_pred C--------CeEEEEcCC
Q 045172 126 W--------LKMVVVGDM 135 (157)
Q Consensus 126 ~--------l~tVVVGd~ 135 (157)
. -.++.|||.
T Consensus 110 ~~~~~~id~~~Sf~VGDa 127 (159)
T PF08645_consen 110 YNDGVEIDLANSFYVGDA 127 (159)
T ss_dssp TSTT--S-CCC-EEEESS
T ss_pred ccccccccccceEEEecc
Confidence 3 358999996
No 485
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=44.29 E-value=82 Score=27.85 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=44.7
Q ss_pred EEEEecCCCccHHHHHHHHHHHHhhccCcceEEE--EcCCcchH---HHHHHHHHcCCeEEE-EcCCCchHHHhhh
Q 045172 75 WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVV--VSDDSDFV---EVFQEATLRWLKMVV-VGDMSDGALKRIA 144 (157)
Q Consensus 75 ~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvL--VSDDsDF~---~~lr~Arer~l~tVV-VGd~~~~~L~r~A 144 (157)
.|-.|.| |...+.-....+.+.+...|+++.+. |..++.+. .+++.+++.+...|| ||.++.......+
T Consensus 23 k~liVtd-~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~i 97 (398)
T cd08178 23 RAFIVTD-RFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIM 97 (398)
T ss_pred eEEEEcC-hhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHH
Confidence 3445566 33444446667788887778876543 44466655 677788888888877 8988655555443
No 486
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=44.20 E-value=75 Score=24.59 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=17.2
Q ss_pred CCcHHHHHhhceEEEEecCCCc
Q 045172 63 YGFADELKRAWFWVRMVLVKPQ 84 (157)
Q Consensus 63 ygla~eLrRAGv~V~~V~dkpq 84 (157)
-.+-..|+..|+.+-.+|.+|.
T Consensus 90 ~e~L~~l~~~g~~~~i~Sn~~~ 111 (199)
T PRK09456 90 IAIMHKLREQGHRVVVLSNTNR 111 (199)
T ss_pred HHHHHHHHhCCCcEEEEcCCch
Confidence 3455678888999888888886
No 487
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=44.16 E-value=88 Score=23.82 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=30.7
Q ss_pred ccCcceEEEEcCC-cchHHHHHHHHHcCCeEEEEcCC
Q 045172 100 KRRFGCLVVVSDD-SDFVEVFQEATLRWLKMVVVGDM 135 (157)
Q Consensus 100 ~r~v~clvLVSDD-sDF~~~lr~Arer~l~tVVVGd~ 135 (157)
..|...+||-.+| .++..+.+.|++.|+.+++|=|-
T Consensus 46 ~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v~DA 82 (115)
T cd02430 46 REGQKKIVLKVNSEEELLELKKKAKSLGLPTSLIQDA 82 (115)
T ss_pred hcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 5788899987766 58999999999999999999653
No 488
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=44.12 E-value=1.5e+02 Score=25.41 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=42.0
Q ss_pred EEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchH---HHHHHHHHcCCeEEE-EcCCCchHHHhhh
Q 045172 76 VRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFV---EVFQEATLRWLKMVV-VGDMSDGALKRIA 144 (157)
Q Consensus 76 V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~---~~lr~Arer~l~tVV-VGd~~~~~L~r~A 144 (157)
|-.|.| +...+ .+..++.+.+...+ ++.+.+..++++. .+++.+++.+..+|| ||.++.......+
T Consensus 28 ~liv~d-~~~~~-~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~ 97 (339)
T cd08173 28 VLVVTG-PTTKS-IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVA 97 (339)
T ss_pred EEEEEC-CchHH-HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHH
Confidence 334444 34444 56777888887667 6666676777776 455666776777776 8888555444443
No 489
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=44.06 E-value=31 Score=30.12 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=38.4
Q ss_pred cHHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCCchHHHhhh
Q 045172 65 FADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMSDGALKRIA 144 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~A 144 (157)
|+-.|+=-=-+|-.||++||- +-...|.| +++.-.-..++++..+.+|.++-.+=|..+..+...+
T Consensus 77 l~ia~~~kP~~vtLVPe~r~e-----------vTTegGlD---~~~~~~~l~~~v~~L~~~GirVSLFiD~d~~qi~aa~ 142 (243)
T COG0854 77 LAIALKTKPHQVTLVPEKREE-----------VTTEGGLD---VAGQLDKLRDAVRRLKNAGIRVSLFIDPDPEQIEAAA 142 (243)
T ss_pred HHHHHhcCCCeEEeCCCchhh-----------cccccchh---hhhhhhhHHHHHHHHHhCCCeEEEEeCCCHHHHHHHH
Confidence 344445555688999999981 11122222 1223333344555555555555555555445555544
Q ss_pred hcccchhhhhcC
Q 045172 145 NAFFSWSDLLMG 156 (157)
Q Consensus 145 D~~fsW~ev~~G 156 (157)
+..-+--|+-+|
T Consensus 143 ~~gA~~IELhTG 154 (243)
T COG0854 143 EVGAPRIELHTG 154 (243)
T ss_pred HhCCCEEEEecc
Confidence 444444444433
No 490
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=44.02 E-value=1.2e+02 Score=23.35 Aligned_cols=60 Identities=22% Similarity=0.227 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHhhc----cCcceEEEEcCCc-------chHHHHHHHHHcCCeEEEEcCC--CchHHHhhhh
Q 045172 85 DADVLLRNYMVAMVDK----RRFGCLVVVSDDS-------DFVEVFQEATLRWLKMVVVGDM--SDGALKRIAN 145 (157)
Q Consensus 85 AAD~AL~~~~~~~~~~----r~v~clvLVSDDs-------DF~~~lr~Arer~l~tVVVGd~--~~~~L~r~AD 145 (157)
+...||.. +.+.+.+ .....+||+||=. +....++.+++.|++...||-+ ....|.+.|.
T Consensus 89 ~~~~AL~~-a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~ 161 (186)
T cd01480 89 FTDCALKY-ATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIAC 161 (186)
T ss_pred cHHHHHHH-HHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHc
Confidence 45566643 4444433 2347788888863 3456788899999997776654 3355666554
No 491
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=43.89 E-value=1.2e+02 Score=26.81 Aligned_cols=76 Identities=11% Similarity=0.064 Sum_probs=47.8
Q ss_pred HHHHHhhce-EEEEecCCCccHHHHHHHHHHHHhhccCcceEEEE-cC---C---cchHHHHHHHHHcCCe----EEEEc
Q 045172 66 ADELKRAWF-WVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVV-SD---D---SDFVEVFQEATLRWLK----MVVVG 133 (157)
Q Consensus 66 a~eLrRAGv-~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLV-SD---D---sDF~~~lr~Arer~l~----tVVVG 133 (157)
..+|+..|. .|-.|.| ++..+. +...+.+.+...|+++-+.+ ++ + +....++..+++.|+. .|.||
T Consensus 15 ~~~l~~~g~~rvlvVtd-~~v~~~-~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 15 LGYLPELNADKYLLVTD-SNVEDL-YGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALG 92 (355)
T ss_pred HHHHHhcCCCeEEEEEC-ccHHHH-HHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEEC
Confidence 344555453 3444555 444554 67788888877888765443 32 2 3466788889999996 55688
Q ss_pred CCCchHHHhh
Q 045172 134 DMSDGALKRI 143 (157)
Q Consensus 134 d~~~~~L~r~ 143 (157)
.++-..+...
T Consensus 93 GGsv~D~ak~ 102 (355)
T cd08197 93 GGVVGNIAGL 102 (355)
T ss_pred CcHHHHHHHH
Confidence 8855555544
No 492
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=43.83 E-value=38 Score=27.03 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=28.9
Q ss_pred CCcchHHHHHHHHHcCCe---EEEEcCC-CchHHHhhhhcccch
Q 045172 111 DDSDFVEVFQEATLRWLK---MVVVGDM-SDGALKRIANAFFSW 150 (157)
Q Consensus 111 DDsDF~~~lr~Arer~l~---tVVVGd~-~~~~L~r~AD~~fsW 150 (157)
..+--..+.+.+..-|+. +++|||+ +|-...+.|...+.|
T Consensus 197 ~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vam 240 (272)
T PRK10530 197 GNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAM 240 (272)
T ss_pred CCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEe
Confidence 333444566666777764 9999999 888888888887755
No 493
>PRK08175 aminotransferase; Validated
Probab=43.21 E-value=97 Score=26.59 Aligned_cols=73 Identities=16% Similarity=0.014 Sum_probs=43.9
Q ss_pred hhcCcccCCCc-HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhc--cCcceEEEEc---------CCcchHHHHHHH
Q 045172 55 AILTPKVGYGF-ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDK--RRFGCLVVVS---------DDSDFVEVFQEA 122 (157)
Q Consensus 55 ~~l~pkvgygl-a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~--r~v~clvLVS---------DDsDF~~~lr~A 122 (157)
.|++|.-+|.. ...++..|+.+..|+..+..-+ ..++.+.+.. .....+++.+ +.+....+++.|
T Consensus 117 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~---~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a 193 (395)
T PRK08175 117 TVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDF---FNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALA 193 (395)
T ss_pred EEEEcCCCCcchHHHHHHcCCeEEEEecccCCCc---HHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence 46777777764 4446788988888876543212 2223333321 2445555553 445667899999
Q ss_pred HHcCCeEE
Q 045172 123 TLRWLKMV 130 (157)
Q Consensus 123 rer~l~tV 130 (157)
++.|+..|
T Consensus 194 ~~~~i~ii 201 (395)
T PRK08175 194 KRYDVLVV 201 (395)
T ss_pred HHcCcEEE
Confidence 99887443
No 494
>PTZ00287 6-phosphofructokinase; Provisional
Probab=43.02 E-value=59 Score=34.74 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=52.4
Q ss_pred HHHHHhhceEEEEecCCCccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHH---cCCeEEEEcCC
Q 045172 66 ADELKRAWFWVRMVLVKPQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATL---RWLKMVVVGDM 135 (157)
Q Consensus 66 a~eLrRAGv~V~~V~dkpqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Are---r~l~tVVVGd~ 135 (157)
...+.+.|+...--+..+.--+..-.+.+.+.+...++|+||.+-.|--++....++.. .|+.|.|||-.
T Consensus 892 ~~i~n~GGtiLlgssR~~~f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVP 964 (1419)
T PTZ00287 892 AKHVNQGGLELTGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIP 964 (1419)
T ss_pred hhHHHcCCeeecCCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeC
Confidence 45567888888211332222245667888888889999999999999999988887764 89998888865
No 495
>PRK13057 putative lipid kinase; Reviewed
Probab=43.00 E-value=1.1e+02 Score=25.38 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=50.3
Q ss_pred cHHHHHhhceEEEEecCC-CccHHHHHHHHHHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeEEEEcCCCchHHHhh
Q 045172 65 FADELKRAWFWVRMVLVK-PQDADVLLRNYMVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKMVVVGDMSDGALKRI 143 (157)
Q Consensus 65 la~eLrRAGv~V~~V~dk-pqAAD~AL~~~~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~tVVVGd~~~~~L~r~ 143 (157)
+...|+.+|+.|.+...+ |..|..+... + ..+.|.|+.+.-|--+.+++.-....+....+|--+|.-.|.|.
T Consensus 18 i~~~l~~~g~~~~~~~t~~~~~a~~~~~~-----~-~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~GT~Ndfar~ 91 (287)
T PRK13057 18 ARAALEAAGLELVEPPAEDPDDLSEVIEA-----Y-ADGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLGTANDLART 91 (287)
T ss_pred HHHHHHHcCCeEEEEecCCHHHHHHHHHH-----H-HcCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCCCccHHHHH
Confidence 345677888776665433 3333333222 2 35678888888888888888777766766666666655566666
Q ss_pred hhcccchhh
Q 045172 144 ANAFFSWSD 152 (157)
Q Consensus 144 AD~~fsW~e 152 (157)
-.+--+|++
T Consensus 92 Lg~~~~~~~ 100 (287)
T PRK13057 92 LGIPLDLEA 100 (287)
T ss_pred cCCCCCHHH
Confidence 554444443
No 496
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=42.99 E-value=22 Score=26.51 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=48.4
Q ss_pred ccCCCcHHHHHhhceEEEEecCCCccH-----------HHHHHHHHHHHhhccCcceEEEEcC-C----cchHHHHHHHH
Q 045172 60 KVGYGFADELKRAWFWVRMVLVKPQDA-----------DVLLRNYMVAMVDKRRFGCLVVVSD-D----SDFVEVFQEAT 123 (157)
Q Consensus 60 kvgygla~eLrRAGv~V~~V~dkpqAA-----------D~AL~~~~~~~~~~r~v~clvLVSD-D----sDF~~~lr~Ar 123 (157)
.+|.-++.+|.+.|+.|..+...|+.+ |+.=...+.+.+ .++|.++.+-. . .....+++.++
T Consensus 9 ~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al--~~~d~vi~~~~~~~~~~~~~~~~~~a~~ 86 (183)
T PF13460_consen 9 FVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAAL--KGADAVIHAAGPPPKDVDAAKNIIEAAK 86 (183)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHH--TTSSEEEECCHSTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhh--hhcchhhhhhhhhccccccccccccccc
Confidence 356778999999999999997777743 343334556666 27776655432 2 22556677778
Q ss_pred HcCCeEEEE-cCC
Q 045172 124 LRWLKMVVV-GDM 135 (157)
Q Consensus 124 er~l~tVVV-Gd~ 135 (157)
+.|++-+|+ |..
T Consensus 87 ~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 87 KAGVKRVVYLSSA 99 (183)
T ss_dssp HTTSSEEEEEEET
T ss_pred ccccccceeeecc
Confidence 889865554 443
No 497
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=42.88 E-value=52 Score=24.12 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=27.4
Q ss_pred cCcceEEEEcCCcc------hH---HHHHHHHHcCCeEEEEcCC---CchHHHhhhh
Q 045172 101 RRFGCLVVVSDDSD------FV---EVFQEATLRWLKMVVVGDM---SDGALKRIAN 145 (157)
Q Consensus 101 r~v~clvLVSDDsD------F~---~~lr~Arer~l~tVVVGd~---~~~~L~r~AD 145 (157)
++...++|+||=.+ +. ..++.++..++...+||-+ ....|...|+
T Consensus 95 ~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~~~~~~~l~~ia~ 151 (170)
T cd01465 95 GGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGDNYNEDLMEAIAD 151 (170)
T ss_pred CCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCCCcCHHHHHHHHh
Confidence 34477999988642 34 3455556677777666665 2245666654
No 498
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=42.83 E-value=55 Score=26.80 Aligned_cols=67 Identities=9% Similarity=-0.037 Sum_probs=40.1
Q ss_pred ccCCCcHHHHHhhceEEEEecCCCccHHHHHHHH--HHHHhhccCcceEEEEcCCcchHHHHHHHHHcCCeE
Q 045172 60 KVGYGFADELKRAWFWVRMVLVKPQDADVLLRNY--MVAMVDKRRFGCLVVVSDDSDFVEVFQEATLRWLKM 129 (157)
Q Consensus 60 kvgygla~eLrRAGv~V~~V~dkpqAAD~AL~~~--~~~~~~~r~v~clvLVSDDsDF~~~lr~Arer~l~t 129 (157)
.||-+-+.+|+..|+.|..+|+..++.+.+ .. +.+.+ ...-..+.++..+..=..+.+..+++|..+
T Consensus 88 aVG~~Ta~al~~~G~~~~~~p~~~~se~Ll--~~~~l~~~~-~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v 156 (255)
T PRK05752 88 SVGAATAAILQDYGLDVSYPEQGDDSEALL--ALPALRQAL-AVPDPRVLIMRGEGGRELLAERLREQGASV 156 (255)
T ss_pred EECHHHHHHHHHcCCCcccCCCCCCcHHHH--hChhhhccc-cCCCCEEEEEccCccHHHHHHHHHHCCCEE
Confidence 789999999999999988888887765443 21 11111 011234444555544445555566666543
No 499
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=42.64 E-value=1.1e+02 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=26.0
Q ss_pred CcceEEEEcCCcc------------hHHH---HHHHHHcCCeEEEEcCCC
Q 045172 102 RFGCLVVVSDDSD------------FVEV---FQEATLRWLKMVVVGDMS 136 (157)
Q Consensus 102 ~v~clvLVSDDsD------------F~~~---lr~Arer~l~tVVVGd~~ 136 (157)
+-..+||+||=.+ ..+. .+.+++.|+.+++||-++
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~ 152 (174)
T cd01454 103 KRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDR 152 (174)
T ss_pred cCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecC
Confidence 3467999998432 3345 788888999999888875
No 500
>CHL00194 ycf39 Ycf39; Provisional
Probab=42.60 E-value=41 Score=27.98 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=40.5
Q ss_pred CCCcHHHHHhhceEEEEecCCCccH-------------HHHHHHHHHHHhhccCcceEEEEcC-----Ccch--------
Q 045172 62 GYGFADELKRAWFWVRMVLVKPQDA-------------DVLLRNYMVAMVDKRRFGCLVVVSD-----DSDF-------- 115 (157)
Q Consensus 62 gygla~eLrRAGv~V~~V~dkpqAA-------------D~AL~~~~~~~~~~r~v~clvLVSD-----DsDF-------- 115 (157)
|--|+.+|..+|+.|+.+...|..+ |..=...+.+.+ .|+|.++-.+. ..+|
T Consensus 13 G~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi~~~~~~~~~~~~~~~~~~~~~ 90 (317)
T CHL00194 13 GRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSF--KGVTAIIDASTSRPSDLYNAKQIDWDGK 90 (317)
T ss_pred HHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHH--CCCCEEEECCCCCCCCccchhhhhHHHH
Confidence 3457788888898888775544322 211122334444 47787664321 1122
Q ss_pred HHHHHHHHHcCCeEEEE
Q 045172 116 VEVFQEATLRWLKMVVV 132 (157)
Q Consensus 116 ~~~lr~Arer~l~tVVV 132 (157)
..+++.|++.|++.+|.
T Consensus 91 ~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 91 LALIEAAKAAKIKRFIF 107 (317)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 45788889999976665
Done!