BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045175
         (177 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 76/206 (36%), Gaps = 55/206 (26%)

Query: 1   MQAFQQFTGINTVMYYNPTIVQMASFQSNQXXXXXXXXXXGTNAVGTIIGIYLIDHFGRK 60
           +  FQQF GIN V+YY P + +     S              N   T++ I  +D FGRK
Sbjct: 284 LSIFQQFVGINVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342

Query: 61  KLALSSLTGVIISLVLLSWAFIXXXXXXXXEVYGWIAVIGLALYITFFAPGMGPVPWTVN 120
            L +    G+ I +  L  AF         +  G +A++ +  Y+  FA   GPV W + 
Sbjct: 343 PLQIIGALGMAIGMFSLGTAF-------YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL 395

Query: 121 SEVYREQYR-----------------------------------------------GICG 133
           SE++    R                                               G+  
Sbjct: 396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455

Query: 134 VVFVILFVPETQGLTFLEVEHMWKER 159
            +F+  FVPET+G T  E+E +W+  
Sbjct: 456 ALFMWKFVPETKGKTLEELEALWEPE 481


>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Dictyostelium Discoideum
          Length = 521

 Score = 26.6 bits (57), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 100 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICGVVFVILFVPETQGLTFLEVEHMWKE 158
           G+  +  F  P MG V  +V+      Q     G  F+I FV  T+G + LE    WK+
Sbjct: 62  GIDTHTHFQLPFMGTV--SVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKK 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,627,508
Number of Sequences: 62578
Number of extensions: 155109
Number of successful extensions: 273
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)