Query 045175
Match_columns 177
No_of_seqs 141 out of 1387
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 10:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 99.8 1.6E-21 3.4E-26 150.8 7.1 155 2-159 278-472 (485)
2 KOG0254 Predicted transporter 99.7 1.7E-17 3.8E-22 131.4 8.0 157 2-160 303-502 (513)
3 PF00083 Sugar_tr: Sugar (and 99.6 9.3E-17 2E-21 125.1 -3.9 149 3-156 262-451 (451)
4 PRK10077 xylE D-xylose transpo 99.5 4.9E-14 1.1E-18 110.6 9.6 146 5-158 282-474 (479)
5 TIGR00887 2A0109 phosphate:H+ 99.5 1.7E-13 3.7E-18 108.5 7.7 117 9-133 303-430 (502)
6 TIGR00893 2A0114 d-galactonate 99.3 2.1E-12 4.5E-17 98.2 5.8 119 2-133 2-120 (399)
7 KOG0252 Inorganic phosphate tr 99.3 1.8E-12 3.8E-17 99.0 4.3 142 10-158 320-514 (538)
8 TIGR00881 2A0104 phosphoglycer 99.3 5E-12 1.1E-16 95.8 6.5 118 3-133 4-121 (379)
9 TIGR00879 SP MFS transporter, 99.2 2.4E-11 5.3E-16 94.6 8.0 125 7-133 297-421 (481)
10 TIGR01299 synapt_SV2 synaptic 99.2 3.5E-12 7.5E-17 104.6 3.3 89 33-133 598-686 (742)
11 PRK10642 proline/glycine betai 99.2 1.4E-11 3E-16 97.4 5.1 117 7-133 263-380 (490)
12 KOG0253 Synaptic vesicle trans 99.2 6.9E-11 1.5E-15 88.4 7.4 90 32-133 383-472 (528)
13 TIGR00891 2A0112 putative sial 99.2 1.8E-11 4E-16 93.7 4.2 114 7-133 25-138 (405)
14 TIGR00898 2A0119 cation transp 99.1 2.2E-11 4.8E-16 96.4 3.2 106 15-133 110-218 (505)
15 TIGR00895 2A0115 benzoate tran 99.1 6E-11 1.3E-15 90.5 5.2 111 10-133 33-143 (398)
16 KOG0569 Permease of the major 99.1 6.4E-11 1.4E-15 92.4 5.3 90 35-133 65-154 (485)
17 PRK10077 xylE D-xylose transpo 99.1 1.1E-10 2.4E-15 91.7 5.8 107 25-133 51-158 (479)
18 KOG2615 Permease of the major 99.1 1.7E-10 3.7E-15 86.5 6.2 89 32-133 70-158 (451)
19 TIGR01299 synapt_SV2 synaptic 99.1 1.2E-10 2.5E-15 95.7 5.7 109 12-133 185-293 (742)
20 KOG0255 Synaptic vesicle trans 99.1 2.2E-10 4.7E-15 91.2 7.0 90 32-133 120-209 (521)
21 TIGR00710 efflux_Bcr_CflA drug 99.1 8.2E-11 1.8E-15 89.7 4.4 112 9-133 20-131 (385)
22 PRK09556 uhpT sugar phosphate 99.1 3.1E-10 6.8E-15 89.2 7.3 112 14-133 49-160 (467)
23 TIGR00900 2A0121 H+ Antiporter 99.1 2.3E-10 5E-15 86.3 6.2 118 8-133 13-130 (365)
24 TIGR02332 HpaX 4-hydroxyphenyl 99.1 1.6E-10 3.4E-15 89.5 4.7 116 5-133 19-134 (412)
25 KOG1330 Sugar transporter/spin 99.1 9.1E-11 2E-15 89.8 3.1 103 18-133 57-159 (493)
26 PRK12307 putative sialic acid 99.1 4E-10 8.6E-15 87.4 6.6 112 9-133 33-144 (426)
27 TIGR00711 efflux_EmrB drug res 99.0 2.5E-10 5.5E-15 89.8 4.6 116 5-133 13-128 (485)
28 PF00083 Sugar_tr: Sugar (and 99.0 1.8E-11 4E-16 95.5 -1.9 93 32-133 48-140 (451)
29 PRK11663 regulatory protein Uh 99.0 7.2E-10 1.6E-14 86.4 6.9 110 11-133 40-149 (434)
30 PLN00028 nitrate transmembrane 99.0 6.1E-10 1.3E-14 87.9 6.1 114 6-133 48-161 (476)
31 PRK10473 multidrug efflux syst 99.0 5.8E-10 1.3E-14 85.6 5.4 118 3-133 12-129 (392)
32 PRK03545 putative arabinose tr 99.0 7.1E-10 1.5E-14 85.2 5.8 108 13-133 28-135 (390)
33 cd06174 MFS The Major Facilita 99.0 1E-09 2.3E-14 82.2 6.4 116 5-133 10-125 (352)
34 TIGR00886 2A0108 nitrite extru 99.0 1.1E-09 2.4E-14 83.0 6.5 117 4-133 11-128 (366)
35 PRK05122 major facilitator sup 99.0 2E-09 4.3E-14 82.9 7.8 122 7-133 28-150 (399)
36 PRK10091 MFS transport protein 99.0 5E-10 1.1E-14 85.9 4.3 110 11-133 20-129 (382)
37 PRK10213 nepI ribonucleoside t 99.0 1.7E-09 3.7E-14 83.3 6.6 106 15-133 41-146 (394)
38 PRK14995 methyl viologen resis 99.0 2.3E-10 4.9E-15 90.7 1.6 116 5-133 17-133 (495)
39 PRK12382 putative transporter; 98.9 2.3E-09 4.9E-14 82.4 6.7 119 10-133 31-150 (392)
40 PRK11102 bicyclomycin/multidru 98.9 1.6E-09 3.5E-14 82.6 5.8 111 10-133 7-117 (377)
41 COG2814 AraJ Arabinose efflux 98.9 1.1E-09 2.3E-14 83.4 4.7 108 12-133 31-139 (394)
42 PRK10406 alpha-ketoglutarate t 98.9 1.7E-09 3.8E-14 84.2 6.0 122 8-133 36-162 (432)
43 PRK10054 putative transporter; 98.9 2.3E-09 5E-14 82.6 6.6 116 5-133 18-134 (395)
44 PRK11551 putative 3-hydroxyphe 98.9 1.9E-09 4.1E-14 83.1 6.1 110 11-133 32-141 (406)
45 TIGR00903 2A0129 major facilit 98.9 1.5E-09 3.3E-14 83.0 5.4 111 9-133 6-116 (368)
46 PRK10642 proline/glycine betai 98.9 2.4E-09 5.2E-14 84.7 6.6 119 11-133 33-156 (490)
47 PRK10504 putative transporter; 98.9 1.2E-09 2.6E-14 85.9 4.8 116 5-133 21-136 (471)
48 PRK03699 putative transporter; 98.9 2.5E-09 5.5E-14 82.3 6.3 110 11-133 24-133 (394)
49 PRK15403 multidrug efflux syst 98.9 1.5E-09 3.2E-14 84.2 4.8 106 15-133 37-142 (413)
50 PRK15075 citrate-proton sympor 98.9 2.7E-09 5.9E-14 83.2 6.3 126 4-133 25-155 (434)
51 PF07690 MFS_1: Major Facilita 98.9 1.1E-09 2.4E-14 82.3 3.6 116 5-133 7-123 (352)
52 PRK03893 putative sialic acid 98.9 2.5E-09 5.3E-14 84.6 5.5 112 9-133 35-146 (496)
53 PRK10406 alpha-ketoglutarate t 98.9 6.2E-09 1.3E-13 81.1 7.5 118 7-133 256-374 (432)
54 TIGR00890 2A0111 Oxalate/Forma 98.9 3.5E-09 7.5E-14 80.2 6.0 110 10-133 19-128 (377)
55 PRK11273 glpT sn-glycerol-3-ph 98.9 6.1E-09 1.3E-13 81.6 7.3 110 14-133 49-158 (452)
56 PRK11195 lysophospholipid tran 98.9 5.1E-09 1.1E-13 80.7 6.6 105 13-133 22-126 (393)
57 TIGR00898 2A0119 cation transp 98.9 1.1E-09 2.3E-14 86.9 2.5 91 33-133 358-448 (505)
58 PRK15462 dipeptide/tripeptide 98.9 7.2E-09 1.6E-13 81.7 7.1 115 7-133 22-140 (493)
59 TIGR00897 2A0118 polyol permea 98.9 4.6E-09 9.9E-14 81.1 5.8 114 11-133 30-143 (402)
60 PRK09952 shikimate transporter 98.9 8.2E-09 1.8E-13 80.6 7.2 119 6-133 262-381 (438)
61 PRK15402 multidrug efflux syst 98.8 4.6E-09 1E-13 81.1 5.5 110 11-133 30-139 (406)
62 PRK15075 citrate-proton sympor 98.8 9.1E-09 2E-13 80.2 7.0 119 6-133 250-369 (434)
63 PRK09705 cynX putative cyanate 98.8 4.3E-09 9.2E-14 81.1 4.7 109 11-133 26-134 (393)
64 PRK11646 multidrug resistance 98.8 1.1E-08 2.4E-13 79.0 6.0 116 5-133 21-137 (400)
65 PRK10207 dipeptide/tripeptide 98.8 2.3E-08 5E-13 79.2 7.9 111 6-128 26-138 (489)
66 PRK09874 drug efflux system pr 98.8 1.8E-08 3.9E-13 77.6 7.1 115 6-133 26-144 (408)
67 PRK09556 uhpT sugar phosphate 98.8 1.2E-08 2.7E-13 80.3 6.0 115 8-133 272-387 (467)
68 PRK10489 enterobactin exporter 98.8 4.5E-09 9.7E-14 81.4 3.4 109 12-133 241-350 (417)
69 PRK03633 putative MFS family t 98.8 6.4E-09 1.4E-13 79.7 4.2 112 9-133 21-132 (381)
70 TIGR00712 glpT glycerol-3-phos 98.8 1.8E-08 3.8E-13 78.7 6.5 110 14-133 47-156 (438)
71 PRK11551 putative 3-hydroxyphe 98.8 9.4E-09 2E-13 79.2 4.8 114 7-133 233-346 (406)
72 TIGR00887 2A0109 phosphate:H+ 98.8 1.5E-08 3.2E-13 80.6 5.7 96 32-133 58-153 (502)
73 PRK09952 shikimate transporter 98.7 1.7E-08 3.7E-13 78.9 5.7 91 39-133 73-163 (438)
74 TIGR00883 2A0106 metabolite-pr 98.7 3.1E-08 6.8E-13 75.4 7.0 118 7-133 232-350 (394)
75 PRK12307 putative sialic acid 98.7 1.7E-08 3.7E-13 78.2 5.7 110 12-133 249-359 (426)
76 PRK11043 putative transporter; 98.7 2.2E-08 4.8E-13 77.1 6.1 103 17-132 29-131 (401)
77 PRK11652 emrD multidrug resist 98.7 2.7E-08 5.8E-13 76.5 6.2 108 13-133 27-134 (394)
78 TIGR00879 SP MFS transporter, 98.7 1.5E-08 3.3E-13 79.0 4.9 108 16-133 50-165 (481)
79 TIGR00924 yjdL_sub1_fam amino 98.7 3.7E-08 8.1E-13 77.8 6.8 114 6-132 22-142 (475)
80 PRK10489 enterobactin exporter 98.7 3.3E-08 7.1E-13 76.6 6.4 119 7-133 30-148 (417)
81 TIGR00890 2A0111 Oxalate/Forma 98.7 3.6E-08 7.8E-13 74.6 6.2 109 14-133 225-333 (377)
82 PRK03893 putative sialic acid 98.7 1.3E-08 2.8E-13 80.4 3.3 110 13-133 294-404 (496)
83 TIGR00901 2A0125 AmpG-related 98.7 5.4E-08 1.2E-12 73.8 6.6 123 8-133 223-347 (356)
84 KOG0252 Inorganic phosphate tr 98.7 1.4E-08 3E-13 78.1 3.1 97 32-133 86-182 (538)
85 PRK10133 L-fucose transporter; 98.7 5.3E-08 1.1E-12 76.2 6.4 112 10-131 42-153 (438)
86 KOG0254 Predicted transporter 98.7 3.2E-08 7E-13 78.8 5.2 89 33-133 92-180 (513)
87 TIGR00896 CynX cyanate transpo 98.7 3.7E-08 8E-13 74.7 4.9 110 9-133 15-124 (355)
88 TIGR00895 2A0115 benzoate tran 98.6 6.7E-08 1.4E-12 73.8 6.2 114 7-133 263-376 (398)
89 PRK15034 nitrate/nitrite trans 98.6 4.9E-08 1.1E-12 76.4 5.2 108 17-133 57-165 (462)
90 TIGR00899 2A0120 sugar efflux 98.6 6.4E-08 1.4E-12 73.6 5.8 114 4-130 7-122 (375)
91 TIGR00885 fucP L-fucose:H+ sym 98.6 9.1E-08 2E-12 74.2 6.4 111 13-133 22-132 (410)
92 cd06174 MFS The Major Facilita 98.6 7.9E-08 1.7E-12 72.0 5.6 117 4-133 185-303 (352)
93 TIGR00892 2A0113 monocarboxyla 98.6 9.1E-08 2E-12 75.2 5.5 107 13-133 38-145 (455)
94 COG2223 NarK Nitrate/nitrite t 98.6 4.5E-07 9.7E-12 69.1 8.7 126 2-133 226-352 (417)
95 PRK08633 2-acyl-glycerophospho 98.6 2.6E-07 5.6E-12 80.0 8.5 107 18-133 34-141 (1146)
96 TIGR00891 2A0112 putative sial 98.6 1.7E-07 3.8E-12 71.8 6.4 108 14-133 258-366 (405)
97 COG2223 NarK Nitrate/nitrite t 98.6 3.2E-07 7E-12 69.9 7.5 106 17-133 37-142 (417)
98 COG2271 UhpC Sugar phosphate p 98.5 3.7E-07 7.9E-12 69.8 7.7 105 16-133 51-155 (448)
99 PRK09705 cynX putative cyanate 98.5 1.1E-07 2.3E-12 73.4 4.8 67 8-75 219-285 (393)
100 PRK09584 tppB putative tripept 98.5 3E-07 6.4E-12 73.2 7.4 111 6-128 33-145 (500)
101 PF12832 MFS_1_like: MFS_1 lik 98.5 1.6E-07 3.4E-12 55.5 4.3 65 3-68 9-73 (77)
102 TIGR02332 HpaX 4-hydroxyphenyl 98.5 4.4E-07 9.5E-12 70.4 7.4 117 4-133 252-371 (412)
103 TIGR00806 rfc RFC reduced fola 98.5 2E-07 4.4E-12 72.7 5.3 107 14-133 46-152 (511)
104 TIGR00883 2A0106 metabolite-pr 98.5 5.3E-07 1.1E-11 68.7 7.6 123 7-133 6-134 (394)
105 TIGR00894 2A0114euk Na(+)-depe 98.5 1.4E-07 3E-12 74.2 4.4 100 23-133 70-169 (465)
106 TIGR00886 2A0108 nitrite extru 98.5 7.6E-07 1.6E-11 67.5 8.2 115 9-133 240-355 (366)
107 TIGR01301 GPH_sucrose GPH fami 98.5 7.4E-07 1.6E-11 70.2 8.2 117 11-129 21-148 (477)
108 TIGR00711 efflux_EmrB drug res 98.5 2.9E-07 6.2E-12 72.5 5.8 116 9-133 270-386 (485)
109 PLN00028 nitrate transmembrane 98.5 1.4E-07 3E-12 74.6 3.9 49 11-60 269-318 (476)
110 PRK11902 ampG muropeptide tran 98.5 3.7E-07 7.9E-12 70.5 5.9 119 3-133 8-132 (402)
111 PRK11273 glpT sn-glycerol-3-ph 98.5 2.6E-07 5.7E-12 72.5 5.1 54 8-62 267-323 (452)
112 PTZ00207 hypothetical protein; 98.4 3.2E-07 6.9E-12 73.9 5.5 115 10-133 43-157 (591)
113 TIGR00893 2A0114 d-galactonate 98.4 4.6E-07 9.9E-12 68.8 6.1 120 7-133 228-349 (399)
114 TIGR00897 2A0118 polyol permea 98.4 8.5E-07 1.9E-11 68.5 7.6 59 5-64 233-291 (402)
115 PRK15034 nitrate/nitrite trans 98.4 1.1E-06 2.5E-11 68.9 7.3 72 3-76 261-332 (462)
116 PF06813 Nodulin-like: Nodulin 98.4 4.9E-07 1.1E-11 65.3 4.9 116 9-133 17-133 (250)
117 TIGR00882 2A0105 oligosacchari 98.4 1.1E-06 2.4E-11 67.7 6.9 69 4-73 12-81 (396)
118 PRK05122 major facilitator sup 98.4 2.3E-07 5E-12 71.4 3.1 109 10-133 232-340 (399)
119 TIGR00901 2A0125 AmpG-related 98.4 5.2E-07 1.1E-11 68.4 5.0 111 11-133 5-121 (356)
120 KOG0253 Synaptic vesicle trans 98.4 4E-07 8.6E-12 68.7 3.9 106 14-133 98-203 (528)
121 PRK15011 sugar efflux transpor 98.4 1.2E-06 2.5E-11 67.6 6.6 60 13-73 235-295 (393)
122 TIGR00892 2A0113 monocarboxyla 98.4 2.6E-07 5.5E-12 72.7 3.0 110 11-133 258-371 (455)
123 TIGR00900 2A0121 H+ Antiporter 98.3 8.4E-07 1.8E-11 66.9 5.4 107 15-133 232-339 (365)
124 TIGR00805 oat sodium-independe 98.3 2.7E-07 5.8E-12 75.4 2.8 122 11-133 50-210 (633)
125 PF06609 TRI12: Fungal trichot 98.3 5.4E-07 1.2E-11 72.4 4.4 102 17-133 67-168 (599)
126 PRK14995 methyl viologen resis 98.3 1.3E-06 2.9E-11 69.4 6.3 115 9-133 274-389 (495)
127 COG2271 UhpC Sugar phosphate p 98.3 2.1E-06 4.5E-11 65.7 6.4 118 6-133 264-384 (448)
128 TIGR00712 glpT glycerol-3-phos 98.3 2.5E-06 5.4E-11 66.7 7.1 54 7-61 264-318 (438)
129 TIGR00903 2A0129 major facilit 98.3 1.8E-06 3.9E-11 66.1 6.0 114 3-133 201-318 (368)
130 TIGR00710 efflux_Bcr_CflA drug 98.3 2.7E-06 5.8E-11 64.9 6.7 69 9-78 221-290 (385)
131 TIGR00881 2A0104 phosphoglycer 98.3 2E-06 4.3E-11 65.2 5.8 116 9-133 231-348 (379)
132 TIGR00880 2_A_01_02 Multidrug 98.3 6E-07 1.3E-11 58.3 2.5 83 39-133 7-89 (141)
133 KOG2532 Permease of the major 98.3 1.6E-06 3.4E-11 68.3 5.0 99 24-133 68-166 (466)
134 TIGR00792 gph sugar (Glycoside 98.2 6.6E-06 1.4E-10 64.0 8.5 116 11-133 16-138 (437)
135 PRK12382 putative transporter; 98.2 2.8E-06 6.2E-11 65.3 6.4 110 9-133 231-340 (392)
136 TIGR00889 2A0110 nucleoside tr 98.2 1.5E-06 3.2E-11 67.7 4.8 112 13-133 227-346 (418)
137 TIGR00899 2A0120 sugar efflux 98.2 2.8E-06 6E-11 64.6 6.2 61 13-74 218-279 (375)
138 PRK09528 lacY galactoside perm 98.2 4.1E-06 8.9E-11 65.1 7.1 69 4-73 20-89 (420)
139 PRK08633 2-acyl-glycerophospho 98.2 3.9E-06 8.4E-11 72.8 7.4 110 11-133 249-360 (1146)
140 TIGR00902 2A0127 phenyl propri 98.2 3E-06 6.6E-11 65.0 6.1 112 8-133 219-330 (382)
141 PRK06814 acylglycerophosphoeth 98.2 4.4E-06 9.6E-11 72.6 7.4 93 32-133 54-146 (1140)
142 PRK10504 putative transporter; 98.2 3E-06 6.6E-11 66.7 5.9 114 10-133 277-391 (471)
143 PF13347 MFS_2: MFS/sugar tran 98.2 6.4E-06 1.4E-10 64.2 7.4 114 15-133 22-142 (428)
144 PRK11663 regulatory protein Uh 98.2 4.6E-06 1E-10 65.2 6.4 47 10-57 259-306 (434)
145 PRK03633 putative MFS family t 98.2 5.2E-06 1.1E-10 63.7 6.5 64 11-75 217-280 (381)
146 PRK10091 MFS transport protein 98.2 1.1E-05 2.5E-10 61.9 8.3 62 14-76 219-281 (382)
147 TIGR00896 CynX cyanate transpo 98.2 6.1E-06 1.3E-10 62.6 6.7 69 8-77 211-280 (355)
148 PRK03699 putative transporter; 98.2 3.3E-06 7.1E-11 65.1 5.2 65 8-73 219-284 (394)
149 PRK11010 ampG muropeptide tran 98.2 4.1E-06 8.9E-11 66.6 5.7 116 6-133 24-145 (491)
150 PRK11102 bicyclomycin/multidru 98.1 6E-06 1.3E-10 63.0 6.3 66 8-74 208-274 (377)
151 COG2270 Permeases of the major 98.1 7.7E-06 1.7E-10 62.7 6.1 117 4-133 262-379 (438)
152 PRK10429 melibiose:sodium symp 98.1 1.5E-06 3.3E-11 68.6 2.0 95 32-133 268-367 (473)
153 PF07690 MFS_1: Major Facilita 98.1 2.4E-06 5.1E-11 64.2 2.8 115 9-133 221-337 (352)
154 PF11700 ATG22: Vacuole efflux 98.1 5.8E-06 1.3E-10 65.4 4.7 125 4-133 291-418 (477)
155 PRK09528 lacY galactoside perm 98.0 1.1E-05 2.4E-10 62.7 6.0 89 32-132 264-352 (420)
156 PRK03545 putative arabinose tr 98.0 1.7E-05 3.8E-10 60.9 7.0 52 12-64 223-275 (390)
157 PRK10429 melibiose:sodium symp 98.0 5.4E-05 1.2E-09 59.9 9.3 116 11-133 23-145 (473)
158 KOG0255 Synaptic vesicle trans 98.0 9E-06 1.9E-10 65.0 4.6 115 32-155 352-506 (521)
159 PRK15011 sugar efflux transpor 98.0 2.3E-05 5E-10 60.4 6.6 62 11-74 32-96 (393)
160 KOG3764 Vesicular amine transp 98.0 9.4E-06 2E-10 61.9 4.1 90 32-133 108-198 (464)
161 PF05977 MFS_3: Transmembrane 97.9 2.9E-05 6.3E-10 62.2 6.8 95 32-133 47-141 (524)
162 PRK10473 multidrug efflux syst 97.9 2.1E-05 4.6E-10 60.4 5.9 67 12-79 221-288 (392)
163 PF13347 MFS_2: MFS/sugar tran 97.9 4.2E-05 9E-10 59.7 7.3 110 6-127 237-347 (428)
164 PRK09669 putative symporter Ya 97.9 8.8E-05 1.9E-09 58.2 9.0 114 12-132 27-147 (444)
165 PRK11043 putative transporter; 97.9 4.5E-05 9.8E-10 58.8 7.1 64 11-75 220-283 (401)
166 PRK11128 putative 3-phenylprop 97.9 2.6E-05 5.6E-10 59.9 5.7 56 4-60 14-69 (382)
167 PRK11010 ampG muropeptide tran 97.9 3.2E-05 6.9E-10 61.6 6.3 60 14-74 242-303 (491)
168 TIGR00889 2A0110 nucleoside tr 97.9 6.3E-05 1.4E-09 58.6 7.7 72 4-76 12-85 (418)
169 KOG2504 Monocarboxylate transp 97.9 4.8E-05 1E-09 60.7 6.9 106 15-133 67-172 (509)
170 PRK15402 multidrug efflux syst 97.8 7.2E-05 1.6E-09 57.8 7.2 65 14-79 235-300 (406)
171 TIGR01272 gluP glucose/galacto 97.8 3.4E-05 7.5E-10 57.8 5.0 64 10-74 156-222 (310)
172 PRK10133 L-fucose transporter; 97.8 3.1E-05 6.8E-10 60.7 5.0 63 11-74 275-339 (438)
173 COG2814 AraJ Arabinose efflux 97.8 0.00014 3.1E-09 55.9 8.3 74 4-79 221-295 (394)
174 COG3104 PTR2 Dipeptide/tripept 97.8 6.7E-05 1.5E-09 58.8 6.2 109 9-128 36-150 (498)
175 PF05631 DUF791: Protein of un 97.8 8.5E-05 1.8E-09 56.1 6.3 57 19-76 59-115 (354)
176 PRK09874 drug efflux system pr 97.8 9.4E-05 2E-09 57.0 6.8 87 35-133 263-349 (408)
177 TIGR00902 2A0127 phenyl propri 97.8 6.5E-05 1.4E-09 57.7 5.9 59 4-63 14-72 (382)
178 PF03825 Nuc_H_symport: Nucleo 97.8 7.9E-05 1.7E-09 57.8 6.2 71 3-74 11-82 (400)
179 PRK11128 putative 3-phenylprop 97.8 6.5E-05 1.4E-09 57.7 5.7 65 12-77 223-287 (382)
180 TIGR00894 2A0114euk Na(+)-depe 97.7 0.00012 2.6E-09 57.7 7.2 57 4-61 271-328 (465)
181 PRK06814 acylglycerophosphoeth 97.7 8.4E-05 1.8E-09 64.8 6.3 121 11-133 242-372 (1140)
182 TIGR00792 gph sugar (Glycoside 97.7 3.2E-05 6.8E-10 60.2 3.3 46 32-77 259-304 (437)
183 TIGR02718 sider_RhtX_FptX side 97.7 0.00011 2.5E-09 56.4 5.9 61 11-72 225-286 (390)
184 KOG2504 Monocarboxylate transp 97.6 4.4E-05 9.6E-10 60.9 2.9 70 4-74 308-379 (509)
185 PRK09848 glucuronide transport 97.6 0.00087 1.9E-08 52.6 10.0 60 13-73 27-92 (448)
186 TIGR02718 sider_RhtX_FptX side 97.6 0.00036 7.8E-09 53.7 7.6 64 3-67 10-76 (390)
187 KOG2533 Permease of the major 97.6 0.00037 8.1E-09 55.4 7.4 96 25-133 77-172 (495)
188 PF05977 MFS_3: Transmembrane 97.6 0.0003 6.5E-09 56.5 6.9 106 15-133 239-345 (524)
189 KOG2325 Predicted transporter/ 97.5 5.9E-05 1.3E-09 59.3 2.8 100 24-132 66-166 (488)
190 KOG2533 Permease of the major 97.5 1.3E-05 2.8E-10 63.6 -1.1 66 4-70 283-353 (495)
191 TIGR00882 2A0105 oligosacchari 97.5 0.00019 4.2E-09 55.3 5.4 60 16-76 237-300 (396)
192 PRK11902 ampG muropeptide tran 97.5 0.00034 7.5E-09 54.1 6.6 57 18-75 234-291 (402)
193 PRK11195 lysophospholipid tran 97.5 0.00072 1.6E-08 52.3 8.2 53 14-67 225-278 (393)
194 PRK11462 putative transporter; 97.5 0.00098 2.1E-08 52.7 8.8 116 11-133 26-148 (460)
195 PF06779 DUF1228: Protein of u 97.4 0.00072 1.6E-08 40.5 5.9 68 11-79 9-76 (85)
196 PRK10213 nepI ribonucleoside t 97.4 0.00064 1.4E-08 52.6 6.7 59 9-69 231-290 (394)
197 TIGR00885 fucP L-fucose:H+ sym 97.4 0.00034 7.3E-09 54.5 5.1 105 12-130 250-356 (410)
198 KOG1330 Sugar transporter/spin 97.4 0.00074 1.6E-08 52.7 6.7 119 10-133 260-387 (493)
199 PF03825 Nuc_H_symport: Nucleo 97.3 0.00029 6.3E-09 54.7 3.9 114 11-133 224-339 (400)
200 KOG2816 Predicted transporter 97.3 0.00033 7.1E-09 55.3 3.9 79 40-133 72-150 (463)
201 PRK11462 putative transporter; 97.2 0.00032 7E-09 55.4 3.8 38 33-70 266-303 (460)
202 COG2211 MelB Na+/melibiose sym 97.2 0.0048 1E-07 48.7 9.5 118 9-133 27-151 (467)
203 PRK11646 multidrug resistance 97.2 0.0015 3.3E-08 50.6 6.6 107 14-133 228-335 (400)
204 PF05978 UNC-93: Ion channel r 97.1 0.0012 2.6E-08 44.4 5.0 117 3-133 5-127 (156)
205 PRK09848 glucuronide transport 97.1 0.00031 6.8E-09 55.1 2.4 106 11-127 245-351 (448)
206 COG2211 MelB Na+/melibiose sym 97.1 0.00067 1.5E-08 53.3 3.9 92 32-133 274-370 (467)
207 KOG3762 Predicted transporter 97.1 0.00039 8.5E-09 55.2 2.6 64 4-68 21-84 (618)
208 COG0738 FucP Fucose permease [ 97.0 0.0023 4.9E-08 49.2 5.8 102 16-127 35-136 (422)
209 PRK09669 putative symporter Ya 97.0 0.00071 1.5E-08 53.1 3.2 84 32-125 266-349 (444)
210 PF06609 TRI12: Fungal trichot 96.9 0.001 2.2E-08 54.0 3.7 92 32-133 351-443 (599)
211 KOG2563 Permease of the major 96.9 0.0063 1.4E-07 47.6 7.6 102 27-133 77-178 (480)
212 KOG4686 Predicted sugar transp 96.9 0.0021 4.6E-08 47.6 4.8 103 16-133 286-390 (459)
213 KOG2532 Permease of the major 96.8 0.0048 1E-07 48.9 6.3 57 3-60 267-324 (466)
214 PRK10054 putative transporter; 96.7 0.0021 4.5E-08 49.8 3.7 90 33-133 247-336 (395)
215 TIGR00805 oat sodium-independe 96.6 0.0077 1.7E-07 49.7 6.8 70 5-75 341-414 (633)
216 TIGR00926 2A1704 Peptide:H+ sy 96.6 0.0073 1.6E-07 49.9 6.4 103 21-128 15-118 (654)
217 COG0477 ProP Permeases of the 96.5 0.011 2.4E-07 42.7 6.6 107 15-132 23-132 (338)
218 TIGR00788 fbt folate/biopterin 96.5 0.0065 1.4E-07 48.2 5.5 53 16-70 47-105 (468)
219 COG2807 CynX Cyanate permease 96.4 0.0093 2E-07 45.4 5.7 73 4-77 218-291 (395)
220 PRK11652 emrD multidrug resist 96.4 0.011 2.4E-07 45.5 6.1 45 14-59 227-272 (394)
221 PF01306 LacY_symp: LacY proto 96.3 0.0077 1.7E-07 46.9 4.7 59 7-66 20-79 (412)
222 PF11700 ATG22: Vacuole efflux 96.2 0.018 3.8E-07 46.0 6.6 87 33-129 73-160 (477)
223 PF03209 PUCC: PUCC protein; 96.1 0.034 7.3E-07 43.1 7.2 109 22-133 8-127 (403)
224 COG2807 CynX Cyanate permease 95.9 0.016 3.5E-07 44.2 4.6 106 11-130 29-134 (395)
225 TIGR00788 fbt folate/biopterin 95.7 0.0012 2.5E-08 52.4 -2.1 106 23-133 282-389 (468)
226 COG0738 FucP Fucose permease [ 95.3 0.056 1.2E-06 41.9 5.8 69 10-79 252-321 (422)
227 PF06963 FPN1: Ferroportin1 (F 94.9 0.16 3.6E-06 40.0 7.3 115 16-133 280-394 (432)
228 TIGR01301 GPH_sucrose GPH fami 94.8 0.12 2.6E-06 41.3 6.7 129 4-133 268-418 (477)
229 KOG2563 Permease of the major 94.8 0.094 2E-06 41.2 5.7 101 24-133 296-398 (480)
230 KOG3626 Organic anion transpor 94.5 0.15 3.4E-06 42.5 6.6 73 3-76 401-477 (735)
231 COG2270 Permeases of the major 94.3 0.23 4.9E-06 38.9 6.8 90 33-131 61-151 (438)
232 PRK15403 multidrug efflux syst 94.3 0.35 7.7E-06 37.7 8.1 53 8-61 232-286 (413)
233 PRK09584 tppB putative tripept 94.1 0.1 2.3E-06 41.9 4.9 97 34-133 320-420 (500)
234 PRK10207 dipeptide/tripeptide 92.9 0.11 2.4E-06 41.6 3.2 98 33-133 312-417 (489)
235 KOG3762 Predicted transporter 92.8 0.04 8.7E-07 44.3 0.7 102 19-133 395-497 (618)
236 KOG0637 Sucrose transporter an 92.8 0.052 1.1E-06 42.7 1.2 116 14-131 52-178 (498)
237 PF01306 LacY_symp: LacY proto 92.4 0.21 4.6E-06 39.1 4.1 90 32-133 261-350 (412)
238 PTZ00207 hypothetical protein; 92.1 0.068 1.5E-06 43.8 1.2 114 5-132 364-488 (591)
239 KOG3098 Uncharacterized conser 91.4 0.47 1E-05 37.8 5.0 89 32-133 52-140 (461)
240 KOG4332 Predicted sugar transp 91.3 0.027 5.8E-07 41.6 -1.8 53 21-74 64-116 (454)
241 PF03209 PUCC: PUCC protein; 90.5 0.84 1.8E-05 35.6 5.5 100 24-133 239-339 (403)
242 PF03137 OATP: Organic Anion T 90.3 0.083 1.8E-06 42.9 0.0 73 3-75 314-389 (539)
243 PRK15462 dipeptide/tripeptide 88.5 0.93 2E-05 36.5 4.7 99 32-133 310-415 (493)
244 PF01770 Folate_carrier: Reduc 87.7 0.26 5.5E-06 38.6 1.0 62 18-79 28-90 (412)
245 TIGR00924 yjdL_sub1_fam amino 87.6 1.1 2.4E-05 35.7 4.7 97 34-133 316-419 (475)
246 PF03092 BT1: BT1 family; Int 85.3 1.9 4.1E-05 34.1 4.8 60 17-78 13-77 (433)
247 PF03137 OATP: Organic Anion T 82.5 0.4 8.8E-06 39.0 0.0 64 15-79 24-87 (539)
248 TIGR00769 AAA ADP/ATP carrier 77.3 4.6 9.9E-05 32.5 4.3 51 32-82 45-96 (472)
249 KOG4686 Predicted sugar transp 75.6 0.69 1.5E-05 34.8 -0.6 93 32-133 81-174 (459)
250 PF13000 Acatn: Acetyl-coenzym 72.9 4 8.7E-05 33.0 3.0 16 51-66 61-76 (544)
251 KOG2615 Permease of the major 69.6 6.1 0.00013 31.0 3.2 99 22-133 290-390 (451)
252 KOG4830 Predicted sugar transp 68.1 8.7 0.00019 28.7 3.6 49 14-63 37-94 (412)
253 COG3104 PTR2 Dipeptide/tripept 56.8 27 0.00058 28.4 4.7 121 9-133 303-432 (498)
254 PF01770 Folate_carrier: Reduc 53.2 1.2E+02 0.0025 24.3 8.5 63 3-65 256-320 (412)
255 TIGR00880 2_A_01_02 Multidrug 51.8 38 0.00083 20.9 4.3 27 37-63 94-120 (141)
256 COG5336 Uncharacterized protei 51.6 23 0.0005 22.3 2.9 28 41-68 53-81 (116)
257 PF01788 PsbJ: PsbJ; InterPro 51.6 31 0.00068 17.3 3.9 20 54-73 2-21 (40)
258 PF07672 MFS_Mycoplasma: Mycop 50.1 1E+02 0.0023 22.9 7.1 30 35-64 146-176 (267)
259 KOG2816 Predicted transporter 49.9 29 0.00063 27.9 4.0 96 24-133 272-368 (463)
260 TIGR00806 rfc RFC reduced fola 48.1 1.2E+02 0.0025 25.0 7.0 56 4-59 272-327 (511)
261 COG2119 Predicted membrane pro 47.0 34 0.00073 23.9 3.4 36 39-74 143-178 (190)
262 PF06963 FPN1: Ferroportin1 (F 46.2 1.5E+02 0.0033 23.7 8.7 47 32-78 40-86 (432)
263 KOG3098 Uncharacterized conser 45.8 54 0.0012 26.5 4.9 55 25-79 274-331 (461)
264 KOG1237 H+/oligopeptide sympor 44.2 1.5E+02 0.0033 24.7 7.4 63 18-81 62-125 (571)
265 PF09605 Trep_Strep: Hypotheti 43.9 1.1E+02 0.0023 21.3 5.9 43 36-78 34-76 (186)
266 PF12670 DUF3792: Protein of u 42.2 89 0.0019 19.8 8.5 49 22-74 30-78 (116)
267 PF11947 DUF3464: Protein of u 38.3 45 0.00099 22.5 3.0 13 53-65 57-69 (153)
268 TIGR01272 gluP glucose/galacto 37.3 66 0.0014 24.1 4.1 28 37-64 271-298 (310)
269 KOG3574 Acetyl-CoA transporter 36.3 18 0.00038 28.7 0.9 20 47-66 80-104 (510)
270 KOG4332 Predicted sugar transp 35.6 1.4E+02 0.0029 22.9 5.3 94 34-133 286-382 (454)
271 PF02694 UPF0060: Uncharacteri 34.3 91 0.002 19.6 3.6 38 32-69 56-93 (107)
272 PF12173 BacteriocIIc_cy: Bact 32.0 47 0.001 19.6 2.0 39 23-62 8-46 (91)
273 PF02487 CLN3: CLN3 protein; 30.2 1.4E+02 0.0029 23.8 4.9 28 105-133 346-373 (402)
274 COG3086 RseC Positive regulato 29.9 76 0.0017 21.2 2.9 40 25-65 68-107 (150)
275 KOG3626 Organic anion transpor 29.9 17 0.00037 31.0 -0.0 62 17-79 120-181 (735)
276 PF08551 DUF1751: Eukaryotic i 29.5 1.2E+02 0.0026 18.6 3.7 37 40-76 24-61 (99)
277 PRK02237 hypothetical protein; 27.5 1.5E+02 0.0032 18.7 3.7 36 32-67 58-93 (109)
278 KOG3764 Vesicular amine transp 25.5 2.4E+02 0.0051 22.8 5.3 41 34-74 200-240 (464)
279 COG3965 Predicted Co/Zn/Cd cat 24.7 3.1E+02 0.0066 20.6 5.7 22 137-158 266-288 (314)
280 KOG3810 Micronutrient transpor 23.1 2.3E+02 0.005 22.5 4.8 60 5-65 245-306 (433)
281 TIGR02185 Trep_Strep conserved 23.0 2.7E+02 0.0059 19.4 6.1 39 36-74 36-74 (189)
282 PF07698 7TM-7TMR_HD: 7TM rece 22.3 2.7E+02 0.0058 19.1 5.0 41 42-82 109-149 (194)
283 PF05297 Herpes_LMP1: Herpesvi 21.7 31 0.00068 25.8 0.0 13 134-146 178-190 (381)
284 PF13493 DUF4118: Domain of un 21.5 35 0.00075 20.8 0.2 17 44-60 89-105 (105)
285 PF08080 zf-RNPHF: RNPHF zinc 21.4 31 0.00068 16.8 0.0 10 54-63 3-12 (36)
286 COG1268 BioY Uncharacterized c 20.7 99 0.0021 21.6 2.3 20 40-59 92-111 (184)
287 TIGR02230 ATPase_gene1 F0F1-AT 20.3 2.3E+02 0.005 17.6 4.5 25 44-68 57-81 (100)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.85 E-value=1.6e-21 Score=150.80 Aligned_cols=155 Identities=30% Similarity=0.580 Sum_probs=135.6
Q ss_pred chhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175 2 QAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 81 (177)
...+|++|++.+.+|...++++.|++.++ +.+.+...+++..+..+++.++.||+|||++++.+..++.++.+.+....
T Consensus 278 ~~~qq~sGi~ai~~Yst~i~~~aG~~~~~-a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~ 356 (485)
T KOG0569|consen 278 SFAQQFSGINAIFFYSTSIFKTAGFTPEE-AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIAL 356 (485)
T ss_pred HHHHHhcCcceeHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998 99999999999999999999999999999999999999999988877665
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh----------------------------
Q 045175 82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG---------------------------- 133 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~---------------------------- 133 (177)
....... .+..+..++..+.+...++.|.+|++|.+.+|++|++.|+.+.
T Consensus 357 ~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~ 434 (485)
T KOG0569|consen 357 FLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPY 434 (485)
T ss_pred HHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4443321 3445566778888889999999999999999999999999887
Q ss_pred ------------eeeeeEEeecCCCCCHHHHHHHHhhh
Q 045175 134 ------------VVFVILFVPETQGLTFLEVEHMWKER 159 (177)
Q Consensus 134 ------------~~~~~~~~pet~~~~~~~~~~~~~~~ 159 (177)
.++.++.+||||||+.+|+.+..+++
T Consensus 435 ~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 435 VFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 66678899999999999998887766
No 2
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=131.43 Aligned_cols=157 Identities=41% Similarity=0.715 Sum_probs=131.2
Q ss_pred chhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175 2 QAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 81 (177)
+.++|++|++...+|.+.+++..|.+.+. ...+.+..+...++..++..+.||+|||++++.+.+.+.++.++++...
T Consensus 303 ~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 303 QLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVG 380 (513)
T ss_pred HHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Confidence 57899999999999999999999987663 5667777788889999999999999999999999999999999888776
Q ss_pred HhcCCCC-cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh---------------------------
Q 045175 82 ISGSSAS-SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG--------------------------- 133 (177)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~--------------------------- 133 (177)
....... .........++..+++...++.++++++|.+.+|++|.+.|+.+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~ 460 (513)
T KOG0254|consen 381 VFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGI 460 (513)
T ss_pred HHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5543221 123345666777788888889999999999999999999999887
Q ss_pred --------------ee-eeeEEeecCCCCCHHHHHHHHhhhc
Q 045175 134 --------------VV-FVILFVPETQGLTFLEVEHMWKERA 160 (177)
Q Consensus 134 --------------~~-~~~~~~pet~~~~~~~~~~~~~~~~ 160 (177)
.. +.++++|||+++++||+++.+.+..
T Consensus 461 ~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~ 502 (513)
T KOG0254|consen 461 GGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGI 502 (513)
T ss_pred cchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCC
Confidence 33 6789999999999999998877654
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.56 E-value=9.3e-17 Score=125.15 Aligned_cols=149 Identities=37% Similarity=0.722 Sum_probs=108.6
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
.++++++++...+|.|.+.++.+.+.. ...+....+...++.+++.++.||+|||+.++.+..+++++.+.+.....
T Consensus 262 ~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~ 338 (451)
T PF00083_consen 262 FFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFF 338 (451)
T ss_pred ccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455677878888899988888877765 34455566777888889999999999999999998888887766541111
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh-----------------------------
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG----------------------------- 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~----------------------------- 133 (177)
...+.. .......++....+...++.++++..|.+.+|++|++.|+++.
T Consensus 339 ~~~~~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 416 (451)
T PF00083_consen 339 LGVSSS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWG 416 (451)
T ss_pred cccccc--cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111110 0112233444445555667778889999999999999999887
Q ss_pred ------------eeeeeEEeecCCCCCHHHHHHHH
Q 045175 134 ------------VVFVILFVPETQGLTFLEVEHMW 156 (177)
Q Consensus 134 ------------~~~~~~~~pet~~~~~~~~~~~~ 156 (177)
.++.++++|||+++++||+++++
T Consensus 417 ~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 417 VFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 56678999999999999998753
No 4
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.53 E-value=4.9e-14 Score=110.63 Aligned_cols=146 Identities=36% Similarity=0.643 Sum_probs=104.7
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
.+..+.+...+|.|.+.++.|.+... ..+......+...++.+++++++||+|||+.++.+.++.+++.+++.......
T Consensus 282 ~~~~~~~~~~~~~p~i~~~~g~~~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~ 360 (479)
T PRK10077 282 QQFVGINVVLYYAPEIFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ 360 (479)
T ss_pred HHHhChhHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 44555666778889998888988776 66677777888899999999999999999999999988888776655432111
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh-------------------------------
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG------------------------------- 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~------------------------------- 133 (177)
.. .........++..++...+.+..+.+..|.+|++.|+++.
T Consensus 361 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~ 433 (479)
T PRK10077 361 AP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHF 433 (479)
T ss_pred cc-------cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhc
Confidence 10 1122233344444444445566779999999999999887
Q ss_pred ----------------eeeeeEEeecCCCCCHHHHHHHHhh
Q 045175 134 ----------------VVFVILFVPETQGLTFLEVEHMWKE 158 (177)
Q Consensus 134 ----------------~~~~~~~~pet~~~~~~~~~~~~~~ 158 (177)
.++.+++.||+++++.||+++.+++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 434 HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 2233456799999999888776644
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.46 E-value=1.7e-13 Score=108.47 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=73.9
Q ss_pred chhHHHHhhHHHHHHcCCCCchH-----------HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHH
Q 045175 9 GINTVMYYNPTIVQMASFQSNQL-----------ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLL 77 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 77 (177)
..+....|.|+++++.|++.... ......+..++.+++.+++++++||+|||+.++.+..+.+++.++.
T Consensus 303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l 382 (502)
T TIGR00887 303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL 382 (502)
T ss_pred HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 44556667889888888764320 0112333445567788999999999999999888887777666555
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 78 SWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
........ ..............++.+..+..|.+.+|++|++.|+++.
T Consensus 383 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~ 430 (502)
T TIGR00887 383 GFAYNHLS--------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAH 430 (502)
T ss_pred HHHHHhcc--------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHH
Confidence 44321100 0111122222223334556677778999999999999776
No 6
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.33 E-value=2.1e-12 Score=98.16 Aligned_cols=119 Identities=16% Similarity=0.034 Sum_probs=88.8
Q ss_pred chhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175 2 QAFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 81 (177)
.++.++...+..+...|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.+..+.++.+++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 80 (399)
T TIGR00893 2 VTVINYLDRANLSFAAPMLQEDLGLSAAQ-YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG 80 (399)
T ss_pred eehHHHHHHHhhhHhHHHHHHhhCCChhh-HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence 34556666677778888888999999888 88888889999999999999999999999999998888777776655432
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+.. .+....+..|.+|++.|++..
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~ 120 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPF-FPGIILIVASWFPASERATAV 120 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhh-hhHHHHHHHHhCCHHHHHHHH
Confidence 1233344444444444433 344448999999999998776
No 7
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.8e-12 Score=98.96 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=99.4
Q ss_pred hhHHHHhhHHHHHHcCCCCchH--------HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175 10 INTVMYYNPTIVQMASFQSNQL--------ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 81 (177)
.|....+...+++..|+.+... +-.-..+..+..++|..+...++|++|||+..+.+.+++.++.+.++...
T Consensus 320 fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y 399 (538)
T KOG0252|consen 320 FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPY 399 (538)
T ss_pred hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCc
Confidence 3555556666777666533321 12223333444456899999999999999999999999988887665533
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh----------------------------
Q 045175 82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG---------------------------- 133 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~---------------------------- 133 (177)
.... + .....++..+.++....+.+.....+.+|.||++.|+++-
T Consensus 400 ~~~~-~------~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~ 472 (538)
T KOG0252|consen 400 NQLE-N------TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPP 472 (538)
T ss_pred cccc-c------cCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCc
Confidence 2111 1 2234455555666677788888789999999999999986
Q ss_pred -----------------eeeeeEEeecCCCCCHHHHHHHHhh
Q 045175 134 -----------------VVFVILFVPETQGLTFLEVEHMWKE 158 (177)
Q Consensus 134 -----------------~~~~~~~~pet~~~~~~~~~~~~~~ 158 (177)
+.+..+++|||+++++||+++....
T Consensus 473 ~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 473 NIGVRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNEEES 514 (538)
T ss_pred cccchHHHHHHHHHHHHhHheeEEeecccccCHHHhcChhhc
Confidence 6677888999999999998654443
No 8
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.30 E-value=5e-12 Score=95.78 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=87.2
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
++.++..........|.+.+++|.+..+ ..+..+...++..++.++.|+++||+|||+.++.+.++..++.++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 81 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTD-LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST- 81 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhH-HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-
Confidence 3445555666777788888889999888 88888889999999999999999999999999999888888776665532
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+. ..+..+++..|.+|++.|+...
T Consensus 82 ----------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~ 121 (379)
T TIGR00881 82 ----------SLWVMAALWALNGIFQGM-GWPPCGRTVTKWFSRSERGTWV 121 (379)
T ss_pred ----------hHHHHHHHHHHHHhhccc-cCCchHHHHHHhcCHhhheeeE
Confidence 122333333343333333 3444558999999999998765
No 9
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.25 E-value=2.4e-11 Score=94.65 Aligned_cols=125 Identities=39% Similarity=0.646 Sum_probs=86.1
Q ss_pred hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
..+.+...++.|.+.++.|.+..+ .........++..++.+++++++||+|||+.+..+.++.+++.+.+.........
T Consensus 297 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
T TIGR00879 297 FTGINAIMYYSPTIFENAGVSTDH-AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT 375 (481)
T ss_pred HhCCeehHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 344456677888888888998866 7778888888899999999999999999999988877777766555432211111
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.. ........+....++...++.+..+..+.+..|.+|++.|+++.
T Consensus 376 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 421 (481)
T TIGR00879 376 GS-SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421 (481)
T ss_pred Cc-ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHH
Confidence 00 00012223333444445555566677768889999999998876
No 10
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.25 E-value=3.5e-12 Score=104.56 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (177)
.....+..++.++|.+++++++||+|||++++.+.++.+++.++++... . ....+++.+++++..+..
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~---------s--~~~ll~~~~l~g~~~~~~- 665 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN---------S--ESAMIALLCLFGGLSIAA- 665 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc---------c--HHHHHHHHHHHHHHHHHH-
Confidence 3445566788899999999999999999999998888888876655421 0 222333333434333333
Q ss_pred ccccceeeccccccccccchh
Q 045175 113 GPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+..+++++|++|++.|+++.
T Consensus 666 ~~~~~a~~aEl~Pt~~Rgta~ 686 (742)
T TIGR01299 666 WNALDVLTVELYPSDKRATAF 686 (742)
T ss_pred HHHHHHHHHHHcCHHHHHHHH
Confidence 344558999999999999887
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.22 E-value=1.4e-11 Score=97.40 Aligned_cols=117 Identities=12% Similarity=0.140 Sum_probs=73.6
Q ss_pred hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175 7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS 85 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (177)
...++....|.|.++ +..|++... .........++..++.++.|+++||+|||+.++.+.++..+..+...... ..
T Consensus 263 ~~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~ 339 (490)
T PRK10642 263 NVTYYMLLTYMPSYLSHNLHYSEDH-GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--NS 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--hC
Confidence 345677778899988 456887766 66666667788889999999999999999988776654333322211111 11
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.. .....+...+.+...+.+.+... .+..|++|++.|+++.
T Consensus 340 ~~------~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~ 380 (490)
T PRK10642 340 NV------IGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSAL 380 (490)
T ss_pred CC------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHH
Confidence 00 11222223333333333334444 6788999999999765
No 12
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.19 E-value=6.9e-11 Score=88.40 Aligned_cols=90 Identities=21% Similarity=0.091 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
-+....+..+...+|.++.+++.||+|||+.|....++++++.+...... ..+...+..+..-.+..++
T Consensus 383 dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------~rn~~tvllf~arafisg~ 451 (528)
T KOG0253|consen 383 DYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------TRNAYTVLLFTARAFISGA 451 (528)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------CcchhHHHHHHHHHHHhch
Confidence 34556667788899999999999999999999999999888887655432 1223344444444555556
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
++..+ +|..|++|+..|+++.
T Consensus 452 fqvaY-vYtPEVyPTavRatgv 472 (528)
T KOG0253|consen 452 FQVAY-VYTPEVYPTAVRATGV 472 (528)
T ss_pred heEEE-EecCcccchhhhhcch
Confidence 66555 9999999999999987
No 13
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.18 E-value=1.8e-11 Score=93.71 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=82.0
Q ss_pred hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
....+......|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++.+++.++.....
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~----- 98 (405)
T TIGR00891 25 AFDFFLVALVLAEVAGEFGLTTVD-AASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP----- 98 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 334455566678878889999888 78888888999999999999999999999999988888777766554421
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+...... .++..|.+|++.|+...
T Consensus 99 ------~~~~l~~~~~l~G~~~~~~~~~~-~~~i~~~~~~~~~~~~~ 138 (405)
T TIGR00891 99 ------GYITMFIARLVIGIGMGGEYGSS-AAYVIESWPKHLRNKAS 138 (405)
T ss_pred ------cHHHHHHHHHHHHhhhhhhhHHH-HHHHHHhCChhhhhHHH
Confidence 12233333444444433333333 37899999999998776
No 14
>TIGR00898 2A0119 cation transport protein.
Probab=99.14 E-value=2.2e-11 Score=96.38 Aligned_cols=106 Identities=24% Similarity=0.249 Sum_probs=76.8
Q ss_pred HhhHHHHHHcCCC---CchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175 15 YYNPTIVQMASFQ---SNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE 91 (177)
Q Consensus 15 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (177)
.+.|.+.+++|++ ..+ ..+..++..++.+++.++.|+++||+|||++++.+.++..++.++.+...
T Consensus 110 ~~~~~i~~e~~l~c~~~~~-~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~---------- 178 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWK-VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP---------- 178 (505)
T ss_pred cccccEEEEecceechHHH-HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc----------
Confidence 3456666778886 555 77888889999999999999999999999999998888887776654421
Q ss_pred hHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 92 VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+...++..+++.+....+..+..+++..|.+|++.|+...
T Consensus 179 --~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~ 218 (505)
T TIGR00898 179 --NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVG 218 (505)
T ss_pred --cHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHH
Confidence 2223333333333333343555558999999999998765
No 15
>TIGR00895 2A0115 benzoate transport.
Probab=99.14 E-value=6e-11 Score=90.52 Aligned_cols=111 Identities=21% Similarity=0.049 Sum_probs=79.6
Q ss_pred hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
.....++.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.+..+.++..++.++.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------- 103 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQ-LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-------- 103 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 345566678888889998877 77788888888999999999999999999999988887777765544321
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+.. .+...++..|.+|++.|++..
T Consensus 104 ---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~ 143 (398)
T TIGR00895 104 ---NVTQLLILRFLAGLGLGGL-MPNLNALVSEYAPKRFRGTAV 143 (398)
T ss_pred ---chHHHHHHHHHHhcccccc-hhhHHHHHHHHcCHHhhchhH
Confidence 1222333333434333333 344448999999999998765
No 16
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.14 E-value=6.4e-11 Score=92.37 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccccc
Q 045175 35 LSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGP 114 (177)
Q Consensus 35 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (177)
...+..+++++|+++.++++||+|||..++.+.++..++.++........ ..-..++...+.+...+...+.
T Consensus 65 ~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~--------~~e~li~GR~i~Gl~~gl~~~~ 136 (485)
T KOG0569|consen 65 IVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP--------SFEMLILGRLIVGLACGLSTGL 136 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHhHHHHHH
Confidence 45557788899999999999999999999988888888877766654322 2334566666666677777777
Q ss_pred ccceeeccccccccccchh
Q 045175 115 VPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 115 ~~~~~~~e~~p~~~R~~~~ 133 (177)
.+ .|+.|+.|.+.||...
T Consensus 137 ~p-myl~E~sP~~~RG~~g 154 (485)
T KOG0569|consen 137 VP-MYLTEISPKNLRGALG 154 (485)
T ss_pred HH-HHHhhcChhhhccHHH
Confidence 78 8999999999999876
No 17
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.11 E-value=1.1e-10 Score=91.69 Aligned_cols=107 Identities=15% Similarity=0.009 Sum_probs=70.8
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHH-HHHHHH
Q 045175 25 SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIA-VIGLAL 103 (177)
Q Consensus 25 g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 103 (177)
+.+..+ ..+..+...++..++++++|+++||+|||++++.+.++.+++.+..+...........+....... ++.+.+
T Consensus 51 ~~~~~~-~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 129 (479)
T PRK10077 51 SAANSL-LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRII 129 (479)
T ss_pred cCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHH
Confidence 666666 778888899999999999999999999999999998888777665543211100000001112223 333444
Q ss_pred Hhhhhccccccccceeeccccccccccchh
Q 045175 104 YITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+.+.+. ..+...++++|.+|++.|+...
T Consensus 130 ~G~~~g~-~~~~~~~~i~e~~~~~~rg~~~ 158 (479)
T PRK10077 130 GGIGVGL-ASMLSPMYIAEIAPAHIRGKLV 158 (479)
T ss_pred HhhhHhH-HhhHHHHHHHhhCChhhhhHHH
Confidence 4444443 3444448999999999998866
No 18
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.11 E-value=1.7e-10 Score=86.47 Aligned_cols=89 Identities=22% Similarity=0.290 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
++.+.+.+.+++.+.++.+|.++||+|||++++.+.+..++..++.+... ++..++..++.++.+...
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~------------~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR------------NFAAFVLARFLGGIFKGN 137 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhccCc
Confidence 67788889999999999999999999999999999999999887776642 444566557777777777
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+... ++++|+.+++.|+.++
T Consensus 138 l~v~r-AiisdV~sek~r~l~m 158 (451)
T KOG2615|consen 138 LSVIR-AIISDVVSEKYRPLGM 158 (451)
T ss_pred hHHHH-HHHHhhcChhhcccee
Confidence 77778 9999999999999887
No 19
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.10 E-value=1.2e-10 Score=95.73 Aligned_cols=109 Identities=18% Similarity=0.047 Sum_probs=81.2
Q ss_pred HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175 12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE 91 (177)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (177)
.+....|.+.+++|++..+ ..++.++..++.++|.+++|+++||+|||++++++.++.+++.++..+..
T Consensus 185 ~is~ilp~i~~~~gls~~~-~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~---------- 253 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSG-KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ---------- 253 (742)
T ss_pred HHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 3455677777888998877 77888888999999999999999999999999998888777776655431
Q ss_pred hHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 92 VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....+++..+.+.+.+.. .+..++++.|.+|++.|+...
T Consensus 254 -s~~~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~ 293 (742)
T TIGR01299 254 -GYGFFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHL 293 (742)
T ss_pred -hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHH
Confidence 1233344444444444433 455559999999999998754
No 20
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.10 E-value=2.2e-10 Score=91.24 Aligned_cols=90 Identities=27% Similarity=0.253 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
.....++..++.++|++++|+++||+|||++++.+.++..++.+..+... ++...+..+++.+.+..+
T Consensus 120 ~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~------------~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 120 VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP------------NYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC------------cHHHHHHHHHHHHhhccc
Confidence 67788888999999999999999999999999999999999987766643 445555566666666666
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....+.+..|+++++.|+.+.
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~ 209 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLAL 209 (521)
T ss_pred hhHHhHhhheeecCcchhhHHH
Confidence 6667779999999999999876
No 21
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.10 E-value=8.2e-11 Score=89.69 Aligned_cols=112 Identities=15% Similarity=0.035 Sum_probs=79.6
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
+........|.+.+++|.++++ ..+......++..++.++.|+++||+|||+.+..+.++.+++.+......
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~------- 91 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASI-VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN------- 91 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-------
Confidence 3344445567777889999887 88888888999999999999999999999999988888777776554421
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+.. .+....+..|.+|++.|++..
T Consensus 92 ----~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 131 (385)
T TIGR00710 92 ----NIETLLVLRFVQAFGASAG-SVISQALVRDIYPGEELSRIY 131 (385)
T ss_pred ----cHHHHHHHHHHHHcchhHH-HHHHHHHHHHhcCcHHHHHHH
Confidence 1222333333333333333 333448899999999998775
No 22
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.09 E-value=3.1e-10 Score=89.20 Aligned_cols=112 Identities=17% Similarity=0.096 Sum_probs=80.0
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
....|.+.+++|.+..+ ..++.+...++..++.++.|+++||+|||+++..+.++.++..+..+........ .
T Consensus 49 ~~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~------~ 121 (467)
T PRK09556 49 KAAQNDMISTYGLSTTE-LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV------S 121 (467)
T ss_pred hhhhHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc------h
Confidence 34467888899999888 8888888899999999999999999999999988888777776655543211111 1
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....++.+.+.+.+.+.+. +....++.|.+|+++|++..
T Consensus 122 ~~~l~~~r~l~G~~~~~~~-~~~~~~i~~~~~~~~rg~a~ 160 (467)
T PRK09556 122 LGLMIALWALSGFFQSTGG-PCSYSTITRWTPRRKRGRFL 160 (467)
T ss_pred HHHHHHHHHHHHHHHhccc-hHHHHHHHHHcCccceeeeE
Confidence 2233333444444434443 34448999999999999886
No 23
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.08 E-value=2.3e-10 Score=86.34 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=81.3
Q ss_pred hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175 8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA 87 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (177)
.+........|.+..+.+.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.++..........
T Consensus 13 ~~~~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~- 90 (365)
T TIGR00900 13 IGTAITQVALPLYVLAGTGSASV-LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGL- 90 (365)
T ss_pred HHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 34445556667777778888777 7888888889999999999999999999999998888777766555443211110
Q ss_pred CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+...+. ..+...++..|.+|+++|++..
T Consensus 91 -----~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 130 (365)
T TIGR00900 91 -----NIWQVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQAN 130 (365)
T ss_pred -----cHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHH
Confidence 122333333443433333 3344448999999999998775
No 24
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.06 E-value=1.6e-10 Score=89.54 Aligned_cols=116 Identities=9% Similarity=-0.081 Sum_probs=84.1
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
.++.......+..|.+.+++|.+..+ ..+..+...++..++.++.|+++||+|||+.+..+.++..++.++.....
T Consensus 19 ~~~~d~~~~~~~~~~l~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--- 94 (412)
T TIGR02332 19 FSFLDRINIGFAGLTMGKDLGLSATM-FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--- 94 (412)
T ss_pred HHHhhhhhHHHHHHhhHhhcCCCHHH-HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc---
Confidence 34444455566677777889999888 88888888999999999999999999999999988888888776655431
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+. ..+....+..|.+|++.|+...
T Consensus 95 --------~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~ 134 (412)
T TIGR02332 95 --------GPESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARAN 134 (412)
T ss_pred --------CHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHH
Confidence 122233334444444333 3344447889999999999876
No 25
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.06 E-value=9.1e-11 Score=89.78 Aligned_cols=103 Identities=10% Similarity=0.113 Sum_probs=79.8
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 045175 18 PTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIA 97 (177)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (177)
+.+-+.+|.+++. ...++....+..++++++.|+++||+.||.++.++..+..++.++.++.. .++.
T Consensus 57 ~~v~~~fni~~s~-~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~------------~Fwq 123 (493)
T KOG1330|consen 57 KEVQTYFNISDSE-LGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN------------HFWQ 123 (493)
T ss_pred HHHHHhcCCCchh-ccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH------------HHHH
Confidence 3334446888877 88899999999999999999999999999999999999998888777653 3344
Q ss_pred HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 98 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+++.+.+.+..-..+.++...+++|.||...|++..
T Consensus 124 ~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~ 159 (493)
T KOG1330|consen 124 VLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVL 159 (493)
T ss_pred HHHHHHHhccchhhhcccchhHhhhcCcchhhhHHH
Confidence 444444333333455666669999999999999887
No 26
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.06 E-value=4e-10 Score=87.36 Aligned_cols=112 Identities=16% Similarity=0.072 Sum_probs=82.0
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
......+..|.+.+++|.++.+ ..+......++..++.++.|+++||+|||+.++.+.++.+++.+......
T Consensus 33 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------- 104 (426)
T PRK12307 33 DFMLIFYIMYLIKADLGLTDME-GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3344555667777889999887 78888888999999999999999999999999999998888876655532
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+.. .+....+..|.+|++.|++..
T Consensus 105 ----~~~~l~~~r~l~G~g~g~~-~~~~~~~~~~~~~~~~r~~~~ 144 (426)
T PRK12307 105 ----GVIMLTLSRFIVGMGMAGE-YACASTYAVESWPKHLKSKAS 144 (426)
T ss_pred ----HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhCCHhHhhHhh
Confidence 1223344344444333333 333337899999999998765
No 27
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.03 E-value=2.5e-10 Score=89.76 Aligned_cols=116 Identities=18% Similarity=0.120 Sum_probs=85.2
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
.+...........|.+.+++|.+.++ ..+......++..++.++.|+++||+|||+.++.+.++..++.+......
T Consensus 13 ~~~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--- 88 (485)
T TIGR00711 13 MAVLDSTIVNVAIPTIAGDLGSSLSQ-VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--- 88 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhh-hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC---
Confidence 33444566677789988999998887 88888889999999999999999999999999998888887776554321
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++. +...+.......+..+++..|.+|++.|+++.
T Consensus 89 --------~~~~l~~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~ 128 (485)
T TIGR00711 89 --------NLELMIIF-RVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAM 128 (485)
T ss_pred --------CHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHH
Confidence 12233333 33333333334455558999999999998876
No 28
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.03 E-value=1.8e-11 Score=95.49 Aligned_cols=93 Identities=26% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
..+......++..+|++++|+++||+|||+.++.+.++..++.++....... .......+.+.+.+.+.+..
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--------NNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccccc
Confidence 4567777888999999999999999999999999999888888666553211 01233444445555554544
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....+ .+..|..|++.|+...
T Consensus 120 ~~~~~-~~~~E~~~~~~R~~~~ 140 (451)
T PF00083_consen 120 YVVSP-IYISEIAPPKHRGFLS 140 (451)
T ss_pred ccccc-cccccccccccccccc
Confidence 44555 9999999999998665
No 29
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.02 E-value=7.2e-10 Score=86.39 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=81.0
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
+....+.|.+.+++|++..+ ..+......++..++.++.|+++||+|||+++.++.++.+++.++.....
T Consensus 40 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 109 (434)
T PRK11663 40 KSFNAAMPEMLADLGLSRSD-IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--------- 109 (434)
T ss_pred hhHHHhhHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh---------
Confidence 35567788888889999887 77888888999999999999999999999999998888888876655431
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+...+....+.. .+..|.+|+++|++..
T Consensus 110 --~~~~l~~~~~l~g~~~g~~~~~~~-~~~~~~~~~~~rg~~~ 149 (434)
T PRK11663 110 --SLWAFALLWVLNAFFQGWGWPVCA-KLLTAWYSRTERGGWW 149 (434)
T ss_pred --HHHHHHHHHHHHHHHHHccchHHH-HHHHHhCCHHHHHHHH
Confidence 122223333333333343333334 8899999999999875
No 30
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.01 E-value=6.1e-10 Score=87.85 Aligned_cols=114 Identities=10% Similarity=-0.055 Sum_probs=78.3
Q ss_pred hhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175 6 QFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS 85 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (177)
.+...+....+.|.+.+++|++..+ ..+......++..++.++.|+++||+|||+++..+.++.+++.++.+...
T Consensus 48 ~~~~~~~~~~~~~~l~~~~gls~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---- 122 (476)
T PLN00028 48 CFVSTFAAAPLLPIIRDNLNLTKSD-IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS---- 122 (476)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc----
Confidence 3344455666777888899998887 66777777888889999999999999999998888777777665544421
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+ ...+.. .+.+|.+|++.|+.+.
T Consensus 123 -------s~~~l~~~r~l~G~~~~-~~~~~~-~~i~~~~~~~~rg~a~ 161 (476)
T PLN00028 123 -------SATGFIAVRFFIGFSLA-TFVSCQ-YWMSTMFNGKIVGTAN 161 (476)
T ss_pred -------CHHHHHHHHHHHHHHHH-hhHHHH-HHHHHhcChhheeHHH
Confidence 02222233333333322 223333 5788999999999875
No 31
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.00 E-value=5.8e-10 Score=85.62 Aligned_cols=118 Identities=17% Similarity=0.067 Sum_probs=84.1
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
.+.+..+........|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.+......
T Consensus 12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~- 89 (392)
T PRK10473 12 VLLYPAGIDMYLVGLPRIAADLNASEAQ-LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE- 89 (392)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC-
Confidence 3455566667777889988999998887 77788888888899999999999999999999988887777765544321
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+ ...+..+.+..|.+|++.|++..
T Consensus 90 ----------~~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~ 129 (392)
T PRK10473 90 ----------TSSLFLAGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVL 129 (392)
T ss_pred ----------cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHH
Confidence 02222333333333222 22334458899999999998775
No 32
>PRK03545 putative arabinose transporter; Provisional
Probab=99.00 E-value=7.1e-10 Score=85.17 Aligned_cols=108 Identities=17% Similarity=0.015 Sum_probs=77.8
Q ss_pred HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
.....|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+++..+.++..++.+......
T Consensus 28 ~~~~~~~l~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~----------- 95 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQ-VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW----------- 95 (390)
T ss_pred HHcchHHHHhHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 334467888899999888 78888888888889999999999999999999999888888776655431
Q ss_pred HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++.....+... ....+...++..|.+|+++|+++.
T Consensus 96 ~~~~l~~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~ 135 (390)
T PRK03545 96 NFTVLLISRIGIAFAH-AIFWSITASLAIRVAPAGKKAQAL 135 (390)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHH
Confidence 1223333333333222 223344447889999999999876
No 33
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.99 E-value=1e-09 Score=82.15 Aligned_cols=116 Identities=21% Similarity=0.205 Sum_probs=85.6
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
....+........|.+.++.|.+..+ ..+......+...++.++.|+++||+|||+.+..+.++..++.+......
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~--- 85 (352)
T cd06174 10 LSGLDRGLLSPALPLLAEDLGLSASQ-AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS--- 85 (352)
T ss_pred HHHHhhhhhHhhHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc---
Confidence 34445566677788888888988887 88888888999999999999999999999999998888888876655431
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+....... .+..|.+|+++|++..
T Consensus 86 --------~~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 125 (352)
T cd06174 86 --------SLWLLLVGRFLLGLGGGALYPAAA-ALIAEWFPPKERGRAL 125 (352)
T ss_pred --------cHHHHHHHHHHHHcccccccHhHH-HHHHHhCCccchhhhh
Confidence 122333334444444443333444 8999999999998876
No 34
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.99 E-value=1.1e-09 Score=83.03 Aligned_cols=117 Identities=16% Similarity=0.038 Sum_probs=84.1
Q ss_pred hhhhhchhHHHHhhHH-HHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPT-IVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
+..+...+....+.|. +.+++|++..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.++......
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~ 89 (366)
T TIGR00886 11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQ-LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ 89 (366)
T ss_pred HHHHHHHHHhHHhhhHHHHHHhCCCHHH-hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555667777885 55889999988 888888889999999999999999999999999998888888766554210
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+ +....+. ..+..|.+|+++|+...
T Consensus 90 ----------~~~~~~~~~~~~g~~-~~~~~~~-~~~~~~~~~~~~r~~~~ 128 (366)
T TIGR00886 90 ----------SYSVLLLLRLFIGIA-GGSFASC-MPWISFFFPKKIQGTAL 128 (366)
T ss_pred ----------hHHHHHHHHHHHHHh-chhhHhH-HHHHHHhcCHhhhhHHH
Confidence 122233333333333 3333333 47889999999998775
No 35
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.98 E-value=2e-09 Score=82.85 Aligned_cols=122 Identities=16% Similarity=-0.005 Sum_probs=79.2
Q ss_pred hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175 7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS 85 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (177)
..+........|.+. +++|.+..+ ..+......+...++.++.|+++||+|||++++.+.++.+++.+..........
T Consensus 28 ~~~~~~~~~~l~~~i~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (399)
T PRK05122 28 YLTIGLPLAVLPGYVHDQLGFSAFL-AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAA 106 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 334444556667655 678988887 888888889999999999999999999999999988877766554433221110
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.. .......++...+.+.+.+. ..+....+..|.+|++.|+++.
T Consensus 107 ~~---~~~~~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~ 150 (399)
T PRK05122 107 WP---VLSLLLLLLGRLLLGIGESL-AGTGSILWGIGRVGALHTGRVI 150 (399)
T ss_pred cc---hhHHHHHHHHHHHHHhhHHh-hcchHHHHHHhhcChhhhccch
Confidence 00 00111223333343333332 2333336778999999998775
No 36
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.98 E-value=5e-10 Score=85.86 Aligned_cols=110 Identities=13% Similarity=-0.037 Sum_probs=78.9
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.......|.+.+++|.+..+ ..+......++..++.+++|+++||+|||+++..+..+.++..++.....
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~--------- 89 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPA-AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS--------- 89 (382)
T ss_pred HHHHhChHHHHHHcCCCHHH-HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 45556778888889998887 78888888999999999999999999999999999888888776655421
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+... +....+..|.+|++.|+...
T Consensus 90 --~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 129 (382)
T PRK10091 90 --SYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAV 129 (382)
T ss_pred --cHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHH
Confidence 12333333444333333222 23336788899988887544
No 37
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.96 E-value=1.7e-09 Score=83.34 Aligned_cols=106 Identities=11% Similarity=-0.043 Sum_probs=77.6
Q ss_pred HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 045175 15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYG 94 (177)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (177)
...|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++.+++.++..... ..
T Consensus 41 ~~l~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----------~~ 108 (394)
T PRK10213 41 SLLTPMAQDLGISEGV-AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----------SF 108 (394)
T ss_pred hhHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----------hH
Confidence 3467777889999887 77777778888899999999999999999999999999888776654421 12
Q ss_pred HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 95 WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...++...+.+...+. ..+....+..|.+|++.|+.+.
T Consensus 109 ~~l~~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~ 146 (394)
T PRK10213 109 SLLLIGRACLGLALGG-FWAMSASLTMRLVPPRTVPKAL 146 (394)
T ss_pred HHHHHHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHH
Confidence 2333333343444333 3344448889999999998776
No 38
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.95 E-value=2.3e-10 Score=90.66 Aligned_cols=116 Identities=15% Similarity=-0.012 Sum_probs=81.0
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
....-...+..-.|.+.+++|.+.++ ..|....+.++...+.+++|+++||+|||+.++.+.++..++.+.++...
T Consensus 17 ~~~ld~tiv~~a~p~i~~~l~~s~~~-~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~--- 92 (495)
T PRK14995 17 PVAIDATVLHVAAPTLSMTLGASGNE-LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP--- 92 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC---
Confidence 33344455666689999999998887 88888888888899999999999999999999999998888887666531
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccc-ccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~ 133 (177)
.....++...+.+.+.+ ...+.......+.+ |++.|+++.
T Consensus 93 --------~~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~ 133 (495)
T PRK14995 93 --------TASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMAL 133 (495)
T ss_pred --------CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 13333444444443333 23333324455554 678888765
No 39
>PRK12382 putative transporter; Provisional
Probab=98.94 E-value=2.3e-09 Score=82.35 Aligned_cols=119 Identities=14% Similarity=-0.036 Sum_probs=75.4
Q ss_pred hhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 10 INTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 10 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
........|.+. +++|.+..+ .........+...++.++.|+++||+|||+.++.+.+...++.+............
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~-~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~- 108 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTM-VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA- 108 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHH-HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch-
Confidence 334444555554 678999888 88888888999999999999999999999999988777665543322211111000
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.......++...+.+.+.+.. .+...++..|.+|+++|+++.
T Consensus 109 --~~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~a~ 150 (392)
T PRK12382 109 --PFKFALLVVGRLILGFGESQL-LTGALTWGLGLVGPKHSGKVM 150 (392)
T ss_pred --hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCccccchhh
Confidence 011222333333333333322 233336778999999999876
No 40
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.94 E-value=1.6e-09 Score=82.59 Aligned_cols=111 Identities=15% Similarity=-0.003 Sum_probs=80.7
Q ss_pred hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
........|.+.+++|.+..+ ..+......++..++.+++|+++||+|||+.+..+.++.+++.+......
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-------- 77 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGS-VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-------- 77 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--------
Confidence 355567778888889998887 78888888899999999999999999999999998888888776655421
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+ ...+...++..|.+|++.|++..
T Consensus 78 ---~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 117 (377)
T PRK11102 78 ---TIDQLIYMRFLHGLAAA-AASVVINALMRDMFPKEEFSRMM 117 (377)
T ss_pred ---cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHH
Confidence 12223333333333333 23333448899999999998775
No 41
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.1e-09 Score=83.42 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=87.0
Q ss_pred HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175 12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE 91 (177)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (177)
...-.+|.+.+++|.+... +.+..+.+..+..+++++...+.||+.||++++....+.+++.++.+...
T Consensus 31 v~~gLLp~iA~dl~vs~~~-aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp---------- 99 (394)
T COG2814 31 VPVGLLPPIAADLGVSEGA-AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP---------- 99 (394)
T ss_pred HHHhchHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 3445578888999999998 88899999999999999999999999999999999999999998877753
Q ss_pred hHHHHH-HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 92 VYGWIA-VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
++.. ++.+.+.+...+..+. ...++..++.|+++|++++
T Consensus 100 --~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Ai 139 (394)
T COG2814 100 --SFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRAL 139 (394)
T ss_pred --cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHH
Confidence 3344 4444444555554444 4449999999999999887
No 42
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.94 E-value=1.7e-09 Score=84.21 Aligned_cols=122 Identities=14% Similarity=-0.016 Sum_probs=73.7
Q ss_pred hchhHHHHhhHHHHHHcC---CCCchH--HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 8 TGINTVMYYNPTIVQMAS---FQSNQL--ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g---~~~~~~--~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
.....+.+..|.+.++++ .+..+. .........++..+|++++|+++||+|||+.+..+.++.+++.+..+....
T Consensus 36 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~ 115 (432)
T PRK10406 36 FDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPG 115 (432)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCC
Confidence 334445555676777764 333220 122334445666799999999999999999999999998888876654320
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....+ .......++.+.+.+.+.+.. .+...+++.|.+|++.|+...
T Consensus 116 ~~~~~---~~~~~~l~~~R~l~G~g~g~~-~~~~~~~i~e~~p~~~rg~~~ 162 (432)
T PRK10406 116 YETIG---TWAPALLLLARLFQGLSVGGE-YGTSATYMSEVAVEGRKGFYA 162 (432)
T ss_pred chhHH---HHHHHHHHHHHHHHHhhhhhh-HhhHHHHHHHhCCCCcccHHH
Confidence 00000 001122333344444443433 344448999999999999754
No 43
>PRK10054 putative transporter; Provisional
Probab=98.93 E-value=2.3e-09 Score=82.64 Aligned_cols=116 Identities=11% Similarity=0.008 Sum_probs=79.6
Q ss_pred hhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175 5 QQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS 83 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 83 (177)
....+.+....+.|.++ +++|.+..+ ..+..+...++..++.++.|+++||+|||++++.+.+..+++.+......
T Consensus 18 ~~~~g~~~~~~~l~~~l~~~~g~s~~~-~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~-- 94 (395)
T PRK10054 18 LLTIGRGATLPFMTIYLSRQYSLSVDL-IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN-- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--
Confidence 34455566677777777 668999888 77777777888899999999999999999999888877776665544421
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+...+ ...+..+.+..|.+|++.|+++.
T Consensus 95 ---------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 134 (395)
T PRK10054 95 ---------NVTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIF 134 (395)
T ss_pred ---------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHH
Confidence 12222222333333222 22333447889999999888874
No 44
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.93 E-value=1.9e-09 Score=83.06 Aligned_cols=110 Identities=17% Similarity=0.051 Sum_probs=78.9
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
+......|.+.+++|.+.++ ..+......++..++.++.|+++||+|||+.+..+.++..++.+......
T Consensus 32 ~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 101 (406)
T PRK11551 32 QSAGVAAPRMAQEFGLDVAQ-MGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW--------- 101 (406)
T ss_pred HHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence 34455567788889998887 88888888999999999999999999999999988877776665444321
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+.. .+...++..|.+|++.|+++.
T Consensus 102 --~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~ 141 (406)
T PRK11551 102 --DFPSLLVARLLTGVGLGGA-LPNLIALTSEAVGPRLRGTAV 141 (406)
T ss_pred --cHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHcCHHHHHHHH
Confidence 1223334344444433333 334448999999999998865
No 45
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.93 E-value=1.5e-09 Score=82.96 Aligned_cols=111 Identities=12% Similarity=-0.075 Sum_probs=73.1
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
+-.......|.+.+++|.+..+ ..+..+...++..++.+..|+++||+|||++++........+.+. ...
T Consensus 6 ~~~~~~~~lp~i~~~~~~s~~~-~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~-~~~-------- 75 (368)
T TIGR00903 6 IWVTFSPVLSLVAEDIDVSKEE-LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGR-LLD-------- 75 (368)
T ss_pred HHHHHHhhHHHHHHHhCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH-HHH--------
Confidence 3456667788888999999887 778888888999999999999999999998766544433332211 110
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.......++.+.+.+.+.+ .. ...+...+|.+|+++|++..
T Consensus 76 --~~~~~~l~~~R~l~G~g~~-~~-~~~~~~~~~~~~~~~r~~a~ 116 (368)
T TIGR00903 76 --PFNYEWLLACQLLAALGQP-FL-LNAFAPAASQIREERRDLVI 116 (368)
T ss_pred --hccHHHHHHHHHHHHhHhH-HH-HHHHHHHHHHcCHHHHHHHH
Confidence 0012233433444333333 22 22335668999999999887
No 46
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.93 E-value=2.4e-09 Score=84.75 Aligned_cols=119 Identities=10% Similarity=-0.016 Sum_probs=73.3
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHH-----HHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALL-----LSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS 85 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (177)
..+.+..|.+.++++.+.++...+ ...+..++..+|+++.|+++||+|||+++..+.++.+++.++.+.......
T Consensus 33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~ 112 (490)
T PRK10642 33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT 112 (490)
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 344455566666665433221111 134556778899999999999999999999999999998877766421000
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
-+ .......++...+.+.+.+....+.. +++.|.+|++.|+...
T Consensus 113 ~g---~~a~~~l~~~R~l~G~g~g~~~~~~~-~~~~e~~p~~~Rg~~~ 156 (490)
T PRK10642 113 IG---IWAPILLLLCKMAQGFSVGGEYTGAS-IFVAEYSPDRKRGFMG 156 (490)
T ss_pred HH---HHHHHHHHHHHHHHHhHhHhhHHHHH-HHHHHhCCCCCCcHHH
Confidence 00 00001133334444444444434444 8999999999998764
No 47
>PRK10504 putative transporter; Provisional
Probab=98.93 E-value=1.2e-09 Score=85.86 Aligned_cols=116 Identities=13% Similarity=-0.034 Sum_probs=81.8
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
.+....+....+.|.+.+++|.+..+ ..+......++..++.+++|+++||+|||++++.+..+..++.+......
T Consensus 21 ~~~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--- 96 (471)
T PRK10504 21 MQSLDTTIVNTALPSMAQSLGESPLH-MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG--- 96 (471)
T ss_pred HHHHhHHHHHHHHHHHHHHhCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC---
Confidence 34444566777889999999998877 67777777888889999999999999999999988777776665443311
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+. ..+...++..|.+|++.|+++.
T Consensus 97 --------~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 136 (471)
T PRK10504 97 --------TLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAM 136 (471)
T ss_pred --------CHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHH
Confidence 122333434444443333 3344457889999999887765
No 48
>PRK03699 putative transporter; Provisional
Probab=98.92 E-value=2.5e-09 Score=82.29 Aligned_cols=110 Identities=10% Similarity=0.009 Sum_probs=78.0
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.......|.+.+++|++..+ ..+......++..++.++.|++.||+|||++++.+.++.+++.++.....
T Consensus 24 ~~~g~~~~~i~~~~~~s~~~-~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~--------- 93 (394)
T PRK03699 24 IVTGMVMGPIAEYFNLPVSS-MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH--------- 93 (394)
T ss_pred HHHhhhhHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 34555578888889999887 77777778888999999999999999999999888887777766554421
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+...+...... ..+..|.+|++.|+...
T Consensus 94 --~~~~~~~~~~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~ 133 (394)
T PRK03699 94 --SLALFSIAMFVLGVVSGITMSIG-TFLITHVYEGKQRGSRL 133 (394)
T ss_pred --hHHHHHHHHHHHHHhhHhhccch-hHHhhhhcccchHHHHH
Confidence 12223333344444333333333 37889999999888764
No 49
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.91 E-value=1.5e-09 Score=84.24 Aligned_cols=106 Identities=9% Similarity=-0.107 Sum_probs=74.3
Q ss_pred HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 045175 15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYG 94 (177)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (177)
.-.|.+.+++|.+... ..+...+..++..++.+++|+++||+|||++++.+..+.+++.++..... ..
T Consensus 37 p~l~~i~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----------~~ 104 (413)
T PRK15403 37 PGIINVVRDFNADVSL-APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----------SM 104 (413)
T ss_pred cCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----------CH
Confidence 3345566788988887 77788888899999999999999999999999998888777776555421 12
Q ss_pred HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 95 WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...++...+.+.+.+ ...+..+++..|.+|++.|++..
T Consensus 105 ~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 142 (413)
T PRK15403 105 TQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLM 142 (413)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHH
Confidence 233333344333332 23344457888999998876653
No 50
>PRK15075 citrate-proton symporter; Provisional
Probab=98.91 E-value=2.7e-09 Score=83.17 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=78.5
Q ss_pred hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHH-----HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLA-----VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLS 78 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 78 (177)
+.++.-........|.+.++++.++.+........ ..+...++.++.|+++||+|||+.++.+..+..++.++.+
T Consensus 25 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~ 104 (434)
T PRK15075 25 FLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA 104 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 44455556677888988888888766523322211 1233357889999999999999999999998888876665
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 79 WAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
........ ........++.+.+.+.+.+....... .+.+|.+|++.|++..
T Consensus 105 ~~~~~~~~---~~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~~p~~~rg~~~ 155 (434)
T PRK15075 105 FVPGYATI---GLAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEIATPGRKGFYT 155 (434)
T ss_pred hCCcHHHH---HHHHHHHHHHHHHHhhccccccHHHHH-HHHHhhCCcccchHHH
Confidence 43100000 000011223334444444443333344 8999999999999876
No 51
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.90 E-value=1.1e-09 Score=82.27 Aligned_cols=116 Identities=21% Similarity=0.195 Sum_probs=82.2
Q ss_pred hhhhchhHHHHhhH-HHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175 5 QQFTGINTVMYYNP-TIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS 83 (177)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 83 (177)
....+........| .+.+++|.+..+ ..+......++..++.++.|+++||+|||++++.+.++.+++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--- 82 (352)
T PF07690_consen 7 LSGFGFSIISPALPLYLAEELGLSPSQ-IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--- 82 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHCCSTTTSHC-HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh---
Confidence 33444455666667 566788999888 8888888899999999999999999999999999988888884443321
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+ .+..++...+.+.+.+. ..+....+..|.+|+++|++..
T Consensus 83 --~~------~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~ 123 (352)
T PF07690_consen 83 --SN------FWLLLIARFLLGIGSGF-FSPASNALIADWFPPEERGRAF 123 (352)
T ss_dssp --CC------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCTCCHHHHH
T ss_pred --hh------HHHHhhhcccccccccc-ccccccccccccchhhhhhhcc
Confidence 11 23334444444444333 3444448999999999998876
No 52
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.89 E-value=2.5e-09 Score=84.55 Aligned_cols=112 Identities=15% Similarity=0.050 Sum_probs=79.3
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
.........|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.++.....
T Consensus 35 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------- 106 (496)
T PRK03893 35 DFVLITLVLTEVQGEFGLTTVQ-AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP------- 106 (496)
T ss_pred HHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 3345555677877889999887 77778888888999999999999999999999988888777776655421
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+ +..+....+..|.+|++.|+.+.
T Consensus 107 ----~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~ 146 (496)
T PRK03893 107 ----GYWTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKAS 146 (496)
T ss_pred ----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHH
Confidence 12223333333333333 23333347899999999998765
No 53
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.89 E-value=6.2e-09 Score=81.12 Aligned_cols=118 Identities=14% Similarity=0.016 Sum_probs=69.8
Q ss_pred hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175 7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS 85 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (177)
..+.+....|.|.++ +..|.+..+ ......+..++..++.++.|+++||+|||+.++...++.++..+...... ..
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~-~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~ 332 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANV-ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--QN 332 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--Hc
Confidence 344566778889888 557888766 55566666666788888999999999999987765554333322111111 11
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.. .....+..........+. ..+..+.+.+|.+|++.|+++.
T Consensus 333 ~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~ 374 (432)
T PRK10406 333 VS-----SPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGV 374 (432)
T ss_pred CC-----cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhh
Confidence 00 011111111111111111 1223447889999999999987
No 54
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.89 E-value=3.5e-09 Score=80.20 Aligned_cols=110 Identities=13% Similarity=0.058 Sum_probs=76.9
Q ss_pred hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
.+....+.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+++..+.++.+++.+......
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-------- 89 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTA-VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD-------- 89 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH--------
Confidence 345566788888999999888 88888889999999999999999999999999999888888876655532
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+....... ....|.+| +.|+...
T Consensus 90 ---~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~ 128 (377)
T TIGR00890 90 ---SLAALYLTYGLASAGVGIAYGIAL-NTAVKWFP-DKRGLAS 128 (377)
T ss_pred ---HHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHcC-cccHHHH
Confidence 122233333333333332222223 55677777 4577654
No 55
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.88 E-value=6.1e-09 Score=81.63 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=76.2
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
.+..|.+.++ |++..+ ..+......++..++.+++|+++||+|||++++.+.++.++..+........ .. .
T Consensus 49 ~~~~p~l~~~-g~s~~~-~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--~~-----~ 119 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGD-LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TS-----S 119 (452)
T ss_pred HHhhHHHHHc-CCCHHH-HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--cc-----c
Confidence 4556776666 998887 8888888899999999999999999999999999888888777655543110 00 1
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....++...+.+...+....+.. ....|.+|++.|+++.
T Consensus 120 ~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~ 158 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIV 158 (452)
T ss_pred HHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHH
Confidence 22233333343444333333344 6778999999998766
No 56
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.88 E-value=5.1e-09 Score=80.69 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=76.0
Q ss_pred HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
.....+.+.++.|.+... ..+......+...++.+++|+++||+|||++++.+..+..+..+.+....
T Consensus 22 ~~~~~~~~~~~~~~s~~~-~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~----------- 89 (393)
T PRK11195 22 LLFAAIALLKELHYPDWS-QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI----------- 89 (393)
T ss_pred HHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH-----------
Confidence 334445556777777766 77888888899999999999999999999999999988877665543321
Q ss_pred HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+. ++...+ .+.......|...+++.|++|+++|+++.
T Consensus 90 -~~--~~~r~l-~G~~~a~~~pa~~a~i~~~~~~~~~~~a~ 126 (393)
T PRK11195 90 -HP--LLAYGL-VGIGAAAYSPAKYGILTELLPGEKLVKAN 126 (393)
T ss_pred -HH--HHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 11 223333 33333444566568999999999999876
No 57
>TIGR00898 2A0119 cation transport protein.
Probab=98.86 E-value=1.1e-09 Score=86.90 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (177)
........+...++.++.+++.||+|||+.+..+.++.+++.++..... ... .........+........
T Consensus 358 ~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---~~~------~~~~~~~~~~~~~~~~~~- 427 (505)
T TIGR00898 358 YLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---VDL------YFLRTALAVLGKFGITSA- 427 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---CCc------hHHHHHHHHHHHHHHHHH-
Confidence 3444556677889999999999999999999988887777765544321 110 122222222222222222
Q ss_pred ccccceeeccccccccccchh
Q 045175 113 GPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+..+.+.+|.+|++.|+++.
T Consensus 428 ~~~~~~~~~e~~p~~~r~~~~ 448 (505)
T TIGR00898 428 FQMVYLYTAELYPTVVRNLGV 448 (505)
T ss_pred HHHHHHHhcccccHHHHhhhH
Confidence 234448999999999999876
No 58
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.86 E-value=7.2e-09 Score=81.73 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=77.5
Q ss_pred hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-CCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-GRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
..+.|....+.|.++ +++|+++.+ +........+...++.+++|+++||+ |||+.++.+.++..++.+++....
T Consensus 22 ~fs~Yg~~~~L~~yL~~~lgls~~~-a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~--- 97 (493)
T PRK15462 22 YFSFYGMRALLILYLTNQLKYDDNH-AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE--- 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh---
Confidence 345677888889888 567999888 77777878888899999999999999 999999999888887765443210
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccc--cccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQ--YRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~R~~~~ 133 (177)
.. .....+...+...+.+....... ++.+|.+|++ .|.++.
T Consensus 98 -~~------~~~~~l~l~li~iG~G~~~~~~~-alv~elfp~~~~~R~sgf 140 (493)
T PRK15462 98 -IH------PSFLYLSLAIIVCGYGLFKSNVS-CLLGELYEPTDPRRDGGF 140 (493)
T ss_pred -cc------hhHHHHHHHHHHHhcccccccHH-HHHHHHCCCCCcccccee
Confidence 00 11112222222222232223334 7899999986 576554
No 59
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.86 E-value=4.6e-09 Score=81.10 Aligned_cols=114 Identities=6% Similarity=-0.170 Sum_probs=75.8
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.....+.+.+.+++|.+..+ .........++..++.++.|+++||+|||+.+..+..+.+++.++..... ...+
T Consensus 30 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--~~~~--- 103 (402)
T TIGR00897 30 GLEQGWLSPFLKALGLSPQQ-SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG--LGHA--- 103 (402)
T ss_pred hhHHHhHHHHHHHhCCCHHH-hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--ccCc---
Confidence 34455667777888999887 77888888999999999999999999999999988888777764432211 0000
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+.. .+....+..+.+|+++|+++.
T Consensus 104 --~~~~l~~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~ 143 (402)
T TIGR00897 104 --NYPLILLFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAV 143 (402)
T ss_pred --cHHHHHHHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHH
Confidence 0222233333333332222 222225677889999999886
No 60
>PRK09952 shikimate transporter; Provisional
Probab=98.85 E-value=8.2e-09 Score=80.63 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=71.7
Q ss_pred hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
+..+.+....|.|.+. +..|.+... .........+...++.++.|+++||+|||+.++.+.++..++.+...... .
T Consensus 262 ~~~~~~~~~~~~~~y~~~~~g~s~~~-~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~ 338 (438)
T PRK09952 262 ELLTMYIVTAFALNYSTQNLGLPREL-FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--E 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--H
Confidence 3445566677888877 557877664 44455556677788899999999999999998877665544433222211 1
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+ .....++...+.+...+.. .+..+++.+|.+|++.|+++.
T Consensus 339 ~~~-----~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~ 381 (438)
T PRK09952 339 AQS-----IFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGA 381 (438)
T ss_pred cCC-----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHH
Confidence 111 0111122222222222222 333458999999999998765
No 61
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.85 E-value=4.6e-09 Score=81.06 Aligned_cols=110 Identities=13% Similarity=-0.052 Sum_probs=74.9
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.......|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.....++.+......
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--------- 99 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEW-VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--------- 99 (406)
T ss_pred hhHhcchHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc---------
Confidence 33344456677888998877 77778888898999999999999999999999988887777766544321
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+...+ ...+..+.+..|.+|++.|....
T Consensus 100 --~~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~ 139 (406)
T PRK15402 100 --SIEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKIT 139 (406)
T ss_pred --cHHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHH
Confidence 12222333333233222 22344457888999998877643
No 62
>PRK15075 citrate-proton symporter; Provisional
Probab=98.84 E-value=9.1e-09 Score=80.25 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=73.7
Q ss_pred hhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 6 QFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
+..+.+.+..|.|.++++ .|++.++ ..+......++..++.+++|+++||+|||+.++.+.....+.... .... ..
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~-~~~~-~~ 326 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAAD-SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYP-ALSW-LV 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HHHH-HH
Confidence 445567788889999855 6998777 777777788888999999999999999999887655443322211 1111 11
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+ . .........+.+...+ ...+..+.+..|.+|++.|+++.
T Consensus 327 ~~~---~--~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p~~~rg~~~ 369 (434)
T PRK15075 327 AAP---S--FARMLAVELWLSFLYG-SYNGAMVVALTEVMPAEVRTAGF 369 (434)
T ss_pred cCC---c--hHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCCCCccchhe
Confidence 111 0 1111111111222222 22333347889999999999876
No 63
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.83 E-value=4.3e-09 Score=81.09 Aligned_cols=109 Identities=15% Similarity=0.054 Sum_probs=80.2
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.......|.+.+++|.+.++ ..+..+...++..++.++.|+++||+|||+++..+..+.+++.+..+...
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~-~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~--------- 95 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSV-AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP--------- 95 (393)
T ss_pred hccchhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc---------
Confidence 34556678888999999988 88888888899999999999999999999999999999999987776532
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+....... .+..+.+| ++|+...
T Consensus 96 --~~~~ll~~r~l~Gig~~~~~~~~~-~~~~~~~~-~~~~~~~ 134 (393)
T PRK09705 96 --QSALLLSSALLGGVGIGIIQAVMP-SVIKRRFQ-QRTPLVM 134 (393)
T ss_pred --chHHHHHHHHHHHhHHHHHhhhhh-HHHHHHcc-ccchhHH
Confidence 122333334444444443333333 77888887 6677664
No 64
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.79 E-value=1.1e-08 Score=79.04 Aligned_cols=116 Identities=13% Similarity=0.021 Sum_probs=80.2
Q ss_pred hhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175 5 QQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS 83 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 83 (177)
....+.+....+.|.++ ++.|.+..+ .........+...+..+++|+++||+|||+.+..+.++.++..+......
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~g~s~~~-~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-- 97 (400)
T PRK11646 21 LVVLGFFVVFPLISIRFVDQLGWAAVM-VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH-- 97 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--
Confidence 34445566666666665 678988877 77777777788888899999999999999999999888888876654421
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+...+...+.+...+ ...+...++..|.+|++.|+++.
T Consensus 98 ---------~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~ 137 (400)
T PRK11646 98 ---------EPWLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFF 137 (400)
T ss_pred ---------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHH
Confidence 12223333333333322 23343347889999999999876
No 65
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.79 E-value=2.3e-08 Score=79.23 Aligned_cols=111 Identities=18% Similarity=0.092 Sum_probs=76.7
Q ss_pred hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175 6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFIS 83 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~ 83 (177)
.-.++|....+.+.++ +++|+++.+ +.+..........+..+++|+++|| +|||+.++.+.++..++.+.+....
T Consensus 26 er~~~y~~~~~l~~yl~~~lg~~~~~-a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~-- 102 (489)
T PRK10207 26 ERFGYYGVQGILAVFFVKQLGFSQEQ-AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL-- 102 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3455677777777777 668998887 7777777777777888899999999 9999999999999998887665421
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc
Q 045175 84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY 128 (177)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 128 (177)
. ......+.+.+.+.+.+ ...+...+++.|.+|++.
T Consensus 103 --~------~~~ll~~~~~l~~ig~g-~~~~~~~~li~~~~p~~~ 138 (489)
T PRK10207 103 --L------KPDLIFIALGTIAVGNG-LFKANPASLLSKCYPPKD 138 (489)
T ss_pred --c------chhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCc
Confidence 0 01112223333333333 333444489999999875
No 66
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.79 E-value=1.8e-08 Score=77.56 Aligned_cols=115 Identities=22% Similarity=0.139 Sum_probs=75.8
Q ss_pred hhhchhHHHHhhHHHHHHcCCCCchH----HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHH
Q 045175 6 QFTGINTVMYYNPTIVQMASFQSNQL----ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 81 (177)
...+......+.|.+.++.|.+..+. ......+..+...++.++.|+++||+|||+.++.+.+...++.++.....
T Consensus 26 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 105 (408)
T PRK09874 26 TGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ 105 (408)
T ss_pred HHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556667888888888876541 25566677788899999999999999999999988877777665544321
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.. + +..+....+..|.+|++.|+...
T Consensus 106 -----------~~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 144 (408)
T PRK09874 106 -----------NIWQFLILRALLGLL-G-GFVPNANALIATQVPRNKSGWAL 144 (408)
T ss_pred -----------hHHHHHHHHHHHHHh-h-hhHHhHHHHHHHhcCHhhhhHHH
Confidence 122233333333322 2 22333346778899999998764
No 67
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.78 E-value=1.2e-08 Score=80.25 Aligned_cols=115 Identities=11% Similarity=0.083 Sum_probs=70.4
Q ss_pred hchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 8 TGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
...+....|.|.++ +.+|++..+ +........++..++.+++|+++||+|||+.++....+..+........ ...
T Consensus 272 ~~~~~~~~~~p~yl~~~~g~s~~~-a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~~~ 347 (467)
T PRK09556 272 IVRIGIDNWSPVYAFQELGFSKED-AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---HAT 347 (467)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---hcC
Confidence 33456678899888 557998877 7777777888899999999999999999987665444333322111111 111
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+ .....+.....+... .+.....+....|.+|++.|+++.
T Consensus 348 ~------~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~ 387 (467)
T PRK09556 348 S------EYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVAN 387 (467)
T ss_pred c------HHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHH
Confidence 1 212222222222221 122212225666999999999887
No 68
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.78 E-value=4.5e-09 Score=81.43 Aligned_cols=109 Identities=21% Similarity=0.173 Sum_probs=71.2
Q ss_pred HHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 12 TVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 12 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
....+.|.+.++ .|.+... ..+......++..++.++.+++.||.++++.+..+.++..+..+..... +
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~-~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~---- 310 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQ-IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----P---- 310 (417)
T ss_pred hHHHhhHHHHHhccCCChhH-hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----c----
Confidence 445567888866 7888776 7777777888899999999999999877777777666655554433221 0
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+++.+.+. ..+..+++..|..|++.|+++.
T Consensus 311 --~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~ 350 (417)
T PRK10489 311 --MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRIN 350 (417)
T ss_pred --hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHH
Confidence 122223333333332222 2334447889999999999876
No 69
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.78 E-value=6.4e-09 Score=79.67 Aligned_cols=112 Identities=15% Similarity=-0.045 Sum_probs=78.8
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
+......+.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.+..+.++.++..+......
T Consensus 21 ~~~~~~~~lp~~~~~~~~s~~~-~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~------- 92 (381)
T PRK03633 21 AIAVLNTLVPLWLAQEHLPTWQ-VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV------- 92 (381)
T ss_pred hhhhHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3455667788888889998877 88899999999999999999999999999999998888887776554421
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+.. .+.......+..|++.|++..
T Consensus 93 ----~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 132 (381)
T PRK03633 93 ----GFWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLL 132 (381)
T ss_pred ----cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHH
Confidence 1223333333333333322 222224556778888888765
No 70
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.77 E-value=1.8e-08 Score=78.72 Aligned_cols=110 Identities=15% Similarity=0.062 Sum_probs=73.8
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
....|.+. +.|++.++ ..+......++..++.++.|+++||+|||+.++.+.++.+++.+........ .. .
T Consensus 47 ~~~~p~~~-~~g~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~ 117 (438)
T TIGR00712 47 ALAMPYLV-EQGFSKGE-LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA--TS-----S 117 (438)
T ss_pred HhhhHHHH-HcCCCHhH-hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc--cc-----h
Confidence 33456554 46998887 8888888899999999999999999999999988887777776554332100 00 0
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....+...+.+...+....+.. ....|.+|+++|+++.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~ 156 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIV 156 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHH
Confidence 11222333333433333333344 6788999999999886
No 71
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.76 E-value=9.4e-09 Score=79.21 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=76.0
Q ss_pred hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
....+....|.|.+.++.|.+..+ .........++..++.++.|+++||+|||+.+..+.+...++.+..... .
T Consensus 233 ~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~- 306 (406)
T PRK11551 233 LIVLYFLLNWLPSLLVGQGLSRSQ-AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA----P- 306 (406)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc----C-
Confidence 344556666788888888988877 7777777888899999999999999999998877655555444332221 0
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+ .....+...+.+.... +..+..+++..|.+|++.|+++.
T Consensus 307 ~------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~ 346 (406)
T PRK11551 307 S------FAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGV 346 (406)
T ss_pred c------HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhh
Confidence 0 1122222222232222 23344458899999999999876
No 72
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.75 E-value=1.5e-08 Score=80.56 Aligned_cols=96 Identities=16% Similarity=0.058 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
..++.....++..++.+++|+++||+|||+.+..+.++..++.++.+... ... ........++.+.+.+.+.+..
T Consensus 58 ~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~---~~~--~~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 58 SAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP---GSS--PKSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc---Ccc--cchHHHHHHHHHHHHHHHHhhh
Confidence 56778888899999999999999999999999988888887776544421 000 0001123444455555555544
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..... ++..|.+|++.|+++.
T Consensus 133 ~~~~~-~~~~e~~p~~~Rg~~~ 153 (502)
T TIGR00887 133 YPLSA-IITSEFATKKWRGAMM 153 (502)
T ss_pred hHHHH-HHHHHhcChhhHHHHH
Confidence 44445 9999999999999887
No 73
>PRK09952 shikimate transporter; Provisional
Probab=98.74 E-value=1.7e-08 Score=78.85 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=58.9
Q ss_pred HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccce
Q 045175 39 VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWT 118 (177)
Q Consensus 39 ~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (177)
..++..+|+++.|+++||+|||++++.+.++.+++.++.+......... .......++.+.+.+.+.+..+.... .
T Consensus 73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~-~ 148 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG---WWAPVLLVTLRAIQGFAVGGEWGGAA-L 148 (438)
T ss_pred HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHH---HHHHHHHHHHHHHHHhhhcccHHHHH-H
Confidence 4455678899999999999999999999988888877665532100000 00011233334444444444434444 8
Q ss_pred eeccccccccccchh
Q 045175 119 VNSEVYREQYRGICG 133 (177)
Q Consensus 119 ~~~e~~p~~~R~~~~ 133 (177)
+..|.+|++.|+...
T Consensus 149 ~~~e~~p~~~rg~~~ 163 (438)
T PRK09952 149 LAVESAPKNKKAFYS 163 (438)
T ss_pred HHHHhCCCCCCcHHH
Confidence 999999999998664
No 74
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.74 E-value=3.1e-08 Score=75.43 Aligned_cols=118 Identities=17% Similarity=0.062 Sum_probs=73.5
Q ss_pred hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC
Q 045175 7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS 85 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (177)
....+....+.|.+. ++.|.+..+ .........+...++.++.++++||+|||+.+.....+..+..+....... ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (394)
T TIGR00883 232 TTTFYLITTYLPTYLTQTLGLSANS-ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL-DS 309 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 334455667788888 567888776 777777788888999999999999999999876554444333211111110 11
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+ ...........+...+.... ..+++..|.+|++.|+++.
T Consensus 310 ~~------~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~ 350 (394)
T TIGR00883 310 GS------FTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGA 350 (394)
T ss_pred Cc------hHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEe
Confidence 11 22222223333333333333 3448999999999998765
No 75
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.74 E-value=1.7e-08 Score=78.24 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=70.6
Q ss_pred HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175 12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE 91 (177)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (177)
.+..+.|.+.++.|.+... .........++..++.++.+++.||+|||+.+..+.++.++..+..... ...
T Consensus 249 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~----- 319 (426)
T PRK12307 249 PIFGLLPTYLAGEGFDTGV-VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI---PQD----- 319 (426)
T ss_pred HHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---ccc-----
Confidence 3556778888778887776 6666677788889999999999999999998887776655544332211 111
Q ss_pred hHHHHHHHHHHHHhhh-hccccccccceeeccccccccccchh
Q 045175 92 VYGWIAVIGLALYITF-FAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... ......++.. ...+..+..+.+..|.+|++.|+++.
T Consensus 320 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 359 (426)
T PRK12307 320 --NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGT 359 (426)
T ss_pred --cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhh
Confidence 111 1112222221 12222333336789999999999876
No 76
>PRK11043 putative transporter; Provisional
Probab=98.74 E-value=2.2e-08 Score=77.12 Aligned_cols=103 Identities=13% Similarity=0.026 Sum_probs=69.4
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175 17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI 96 (177)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (177)
.|.+.+++|.+..+ ..+...+..++..++.+++|+++||+|||+.++.+..+..++.+...... ....
T Consensus 29 ~~~i~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 96 (401)
T PRK11043 29 FKAIQADLQTSASA-VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----------SAAQ 96 (401)
T ss_pred HHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----------CHHH
Confidence 34445788998887 88888888999999999999999999999999988877776665544321 0222
Q ss_pred HHHHHHHHhhhhccccccccceeeccccccccccch
Q 045175 97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGIC 132 (177)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~ 132 (177)
.++...+.+.+.+. ..+....+..|.+|++.|+..
T Consensus 97 l~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~ 131 (401)
T PRK11043 97 LLVLRFVQAVGVCS-AAVIWQALVIDRYPAQKANRV 131 (401)
T ss_pred HHHHHHHHHhhhHH-HHHHHHHHHHHhcCcHHHHHH
Confidence 33333333322222 223333678899998876543
No 77
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.73 E-value=2.7e-08 Score=76.50 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=72.6
Q ss_pred HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
.....|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.+...++.+......
T Consensus 27 ~~p~~~~i~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~----------- 94 (394)
T PRK11652 27 YVPAIADMARDLNVREGA-VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH----------- 94 (394)
T ss_pred HhccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----------
Confidence 334467777889999888 78888888899999999999999999999999988877777665543321
Q ss_pred HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+ ...+....+..|.+|.+.|+...
T Consensus 95 ~~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 134 (394)
T PRK11652 95 SLTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHAN 134 (394)
T ss_pred cHHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHH
Confidence 02222333333332222 22333336677888877776553
No 78
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.72 E-value=1.5e-08 Score=78.98 Aligned_cols=108 Identities=19% Similarity=0.094 Sum_probs=73.5
Q ss_pred hhHHHHHHcCCC--------CchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175 16 YNPTIVQMASFQ--------SNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA 87 (177)
Q Consensus 16 ~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (177)
..|.+..+.+.+ ..+ ..+......++..++.++.|+++||+|||++++.+.++..++.++..... ...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~~~ 125 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSL-WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---FAL 125 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhH-HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---ccc
Confidence 344445455554 566 77888889999999999999999999999999988888777765553321 000
Q ss_pred CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+.. .+....+..|.+|++.|+...
T Consensus 126 -----~~~~~~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~ 165 (481)
T TIGR00879 126 -----SVEMLIVGRVLLGIGVGIA-SALVPMYLSEIAPKALRGALT 165 (481)
T ss_pred -----chHHHHHHHHHHHhhhhHH-HhHHHHHHHccCChhhhhhhh
Confidence 0123344444444444433 334448999999999998775
No 79
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.71 E-value=3.7e-08 Score=77.78 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=79.2
Q ss_pred hhhchhHHHHhhHHHHHH---cCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHH
Q 045175 6 QFTGINTVMYYNPTIVQM---ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~ 81 (177)
.-.+.+.+..+.|.++++ +|.+..+ +........++..++.+++|+++|| +|||+.++.+.++.+++.++.....
T Consensus 22 ~~~~~~~~~~~L~~yl~~~~~lg~s~~~-ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~ 100 (475)
T TIGR00924 22 ERFSYYGMQGILAVYLVQQAGLGFSQEQ-AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI 100 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667788888888754 7888887 8888888889999999999999999 8999999999988888776555421
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc---ccch
Q 045175 82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY---RGIC 132 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---R~~~ 132 (177)
......+...+.+.+.+. ..+...++.+|.+|++. |+.+
T Consensus 101 -----------~~~~~~~~~~l~g~g~g~-~~~~~~~~~a~~~~~~~~~~r~~~ 142 (475)
T TIGR00924 101 -----------YPDLIFYGLGTIAVGSGL-FKANPSSMVGKLYERGDMPRRDGG 142 (475)
T ss_pred -----------cHhHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCCcccccce
Confidence 011222223333333222 33444478889998754 6544
No 80
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.71 E-value=3.3e-08 Score=76.62 Aligned_cols=119 Identities=17% Similarity=0.094 Sum_probs=77.3
Q ss_pred hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
..+........|.+.++.+.+..+ ..+......+...++.++.|+++||+|||+++..+.++.+++.+......... .
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~s~~~-~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~ 107 (417)
T PRK10489 30 IFGLGLLGVAVPVQIQMMTGSTLQ-VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP-E 107 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC-C
Confidence 334455566678887777777766 88888888999999999999999999999999887777666654443221111 1
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+ ......+...+.+...+....+.. ++..|..|++.|+++.
T Consensus 108 ~-----~~~~l~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 148 (417)
T PRK10489 108 P-----SLLAIYLLGLWDGFFGSLGVTALL-AATPALVGRENLMQAG 148 (417)
T ss_pred C-----cHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccCHHHHHHHH
Confidence 1 012222222332333232223333 7889999998887765
No 81
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.70 E-value=3.6e-08 Score=74.64 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=70.7
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
..+.+.+.++.|.+..+ .........+...++.++.+++.||+|||+.+..+.++..++.+...... .. .
T Consensus 225 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~------~ 294 (377)
T TIGR00890 225 IGLYKPYGQSLGLSDGF-LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP---ML------N 294 (377)
T ss_pred HHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc---cc------h
Confidence 34445566777877666 66777888888999999999999999999998887777766654433211 00 0
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...........+...+......+ .+..|.+|++.|++..
T Consensus 295 ~~~~~~~~~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 333 (377)
T TIGR00890 295 DVLFLATVALVFFTWGGTISLFP-SLVSDIFGPANSAANY 333 (377)
T ss_pred hHHHHHHHHHHHHHhccchhccH-HHHHHHhhhhhhhhHh
Confidence 11122222233333333223333 7889999999998876
No 82
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.68 E-value=1.3e-08 Score=80.45 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=70.5
Q ss_pred HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcch
Q 045175 13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSE 91 (177)
Q Consensus 13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (177)
...+.|.+. ++.|.+..+ .........++..++.++.|+++||+|||+.++.+..+..+..+..... ...
T Consensus 294 ~~~~lp~~l~~~~g~~~~~-~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~---- 364 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHT-VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----GGA---- 364 (496)
T ss_pred HHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----ccc----
Confidence 446778888 478888877 7778888888899999999999999999999877665554443322111 110
Q ss_pred hHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 92 VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.........+.....+.+..+....+..|.+|++.|+++.
T Consensus 365 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 404 (496)
T PRK03893 365 --NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGL 404 (496)
T ss_pred --HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhccc
Confidence 1111111122111222222333337888999999999886
No 83
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.68 E-value=5.4e-08 Score=73.80 Aligned_cols=123 Identities=10% Similarity=0.014 Sum_probs=74.2
Q ss_pred hchhHHHHhhHHHHHHcCCCCchHHHHHHHH-HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC-
Q 045175 8 TGINTVMYYNPTIVQMASFQSNQLALLLSLA-VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS- 85 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~- 85 (177)
.+.+....+.|.+.++.|.+.++ ......+ ..+...++.++++++.||+|||+.+..+.++.++...+.........
T Consensus 223 ~~~~~~~~~~~~~l~~~g~~~~~-~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 301 (356)
T TIGR00901 223 LGDSAATVLTTLFLLDMGFSKEE-IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH 301 (356)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34455666778888778888776 4444443 34567899999999999999999988777776665543332211000
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+... ...........+.+...+....... ++..|.+|++.|++..
T Consensus 302 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~ 347 (356)
T TIGR00901 302 DGITF-PHLLMLFLTITLEAVTGGLGTVAFV-AFLSKLSNPKFGATQM 347 (356)
T ss_pred ccccc-chHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCCccHHHH
Confidence 00000 0112222223333333343444444 9999999999999764
No 84
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.67 E-value=1.4e-08 Score=78.06 Aligned_cols=97 Identities=23% Similarity=0.096 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
...++.+..++.++|+++.|++.||+|||+++....++++++.++++........ .....++...+.+++++.+.=
T Consensus 86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~----~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP----LGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC----cchhhHHHHHHHHhhccccCC
Confidence 7788888899999999999999999999999999999999998744442211111 111223333344445544444
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+ |..-++.+|....+.||.-.
T Consensus 162 Y-PlSAtI~SE~an~~~RGa~i 182 (538)
T KOG0252|consen 162 Y-PLSATIMSESANKKTRGAFI 182 (538)
T ss_pred C-cchHHHhhhhhhhcccccee
Confidence 4 44448999999999999765
No 85
>PRK10133 L-fucose transporter; Provisional
Probab=98.67 E-value=5.3e-08 Score=76.18 Aligned_cols=112 Identities=14% Similarity=-0.063 Sum_probs=78.9
Q ss_pred hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
......+.|.+.+++|.+..+ ..+......++..++.++.|+++||+|||++++.+..+..++.+++..... .+
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~-~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--a~--- 115 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQ-AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--IM--- 115 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--cC---
Confidence 355666788888889999887 888888899999999999999999999999999999988888765432110 00
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI 131 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 131 (177)
.....++.+.+.+.+.+....... .+..|..|.+.|..
T Consensus 116 ---~~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~ 153 (438)
T PRK10133 116 ---NYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHF 153 (438)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHH
Confidence 122334444444444444333333 67778777777653
No 86
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.67 E-value=3.2e-08 Score=78.84 Aligned_cols=89 Identities=22% Similarity=0.181 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (177)
.++.....++..++.+++|+++|++|||+.++.+.+...++.++.+.+. ......+++.+.+.+.+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----------~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----------SWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHhccchhhhh
Confidence 6888889999999999999999999999999999999999998887753 24455666667676666666
Q ss_pred ccccceeeccccccccccchh
Q 045175 113 GPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...+ .|.+|+.|++.|+...
T Consensus 161 ~~~p-iy~sEiap~~~RG~l~ 180 (513)
T KOG0254|consen 161 VLAP-VYISEIAPAHIRGTLV 180 (513)
T ss_pred hcch-hhHhhcCChhhhHHHH
Confidence 6677 9999999999999776
No 87
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.65 E-value=3.7e-08 Score=74.69 Aligned_cols=110 Identities=18% Similarity=0.093 Sum_probs=73.9
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
+........|.+.+++|++..+ ..+......++..++.++.|+++||+|||+.+..+.++..++.+.. .. +
T Consensus 15 ~~~~~~~~lp~l~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----~-- 85 (355)
T TIGR00896 15 ALTSVGPLLPQIRSALGMSFSV-AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----P-- 85 (355)
T ss_pred ccccCcccHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----c--
Confidence 3344566788888999999888 8888899999999999999999999999999988777665554332 11 1
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+....... .+..|.+| +.|++..
T Consensus 86 ----~~~~l~~~~~~~g~g~~~~~~~~~-~~~~~~~~-~~~~~~~ 124 (355)
T TIGR00896 86 ----GTALLFAGTALIGVGIAIINVLLP-SLIKRDFP-QRVGLMT 124 (355)
T ss_pred ----cHHHHHHHHHHHHHHHHHHhccch-HHHHHhCc-chhhHHH
Confidence 122233333333333333222333 56778786 4676554
No 88
>TIGR00895 2A0115 benzoate transport.
Probab=98.64 E-value=6.7e-08 Score=73.77 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=72.6
Q ss_pred hhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 7 FTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
..+.+....|.|.+.++.|.+.++ .........++..++.++.++++||+|||+......+. .+...+.... ..
T Consensus 263 ~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~- 336 (398)
T TIGR00895 263 LVGVYFLTNWLPKLMVELGFSLSL-AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLG-AVFAVLVGST---LF- 336 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH-HHHHHHHHHH---hh-
Confidence 344556667788777888888777 77777888888999999999999999999554433333 3222222211 01
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+ .....+...+.+...+.. .+..+++..|.+|++.|+++.
T Consensus 337 ~------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 376 (398)
T TIGR00895 337 S------PTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGV 376 (398)
T ss_pred C------HHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHH
Confidence 1 222233333444433333 344458999999999999765
No 89
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.63 E-value=4.9e-08 Score=76.41 Aligned_cols=108 Identities=16% Similarity=0.093 Sum_probs=74.4
Q ss_pred hHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175 17 NPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW 95 (177)
Q Consensus 17 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (177)
.+.+.+ ++|++.++ ..+..++..+...++.+..|++.||+|.|+++.++..+..+..+..+.......+ ...
T Consensus 57 ~~~~~~~~~~ls~~q-~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~------s~~ 129 (462)
T PRK15034 57 TVNLNKIGFNFTTDQ-LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT------PFG 129 (462)
T ss_pred HHHhhhhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC------CHH
Confidence 444444 68999988 7778888888888999999999999999999998888887777655542110011 122
Q ss_pred HHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..++...+.+.+ +..+.+.. ..+++.+|+++||++.
T Consensus 130 ~lli~r~l~Gig-g~~f~~~~-~~vs~wfp~~~rG~A~ 165 (462)
T PRK15034 130 IFIVIALLCGFA-GANFASSM-GNISFFFPKAKQGSAL 165 (462)
T ss_pred HHHHHHHHHHHH-HHhHHHHH-HHHHHHCCHhHhHHHH
Confidence 333334444433 33444434 7899999999999876
No 90
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.63 E-value=6.4e-08 Score=73.62 Aligned_cols=114 Identities=12% Similarity=0.010 Sum_probs=68.9
Q ss_pred hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhH-hhHHHHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALS-SLTGVIISLVLLSWAF 81 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~ 81 (177)
+....+........|.+. +++|.+..+ ..+......+...+..++.|.++||+|||+.++. +.....++.++.....
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 85 (375)
T TIGR00899 7 FLTGIAGALQFPTLSLFLSEEVRARPAM-IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR 85 (375)
T ss_pred HHHHHHHHHHhhHHHHHHHcccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc
Confidence 334444455556666665 678998877 7777777788888999999999999999887654 4444444433333210
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175 82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG 130 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 130 (177)
.....++...+.+ .......+....+..|..|++.|+
T Consensus 86 -----------~~~~l~~~~~~~g-~~~~~~~p~~~~~~~~~~~~~~~~ 122 (375)
T TIGR00899 86 -----------NYFLLLVLGVLLS-SFASTANPQLFALAREHADRTGRE 122 (375)
T ss_pred -----------hHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHhhhcchh
Confidence 1222222222222 222233444446778888877776
No 91
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.62 E-value=9.1e-08 Score=74.24 Aligned_cols=111 Identities=14% Similarity=-0.058 Sum_probs=77.9
Q ss_pred HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
.....|.+.+++|.+..+ ..+..+...++..+++++.|++.||+|||+.++.+..+.+++.++...... .+
T Consensus 22 ~~~l~~~~~~~~~~s~~~-~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--~~------ 92 (410)
T TIGR00885 22 TNPMVPQFQQAFTLTAFQ-AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--IM------ 92 (410)
T ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--hc------
Confidence 346678888889999888 888899999999999999999999999999999999988888765433210 00
Q ss_pred HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+....+.. .+..+..|++.|++..
T Consensus 93 ~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~ 132 (410)
T TIGR00885 93 NYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRL 132 (410)
T ss_pred cHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHH
Confidence 122233333443444443333334 6778888888777654
No 92
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.61 E-value=7.9e-08 Score=71.98 Aligned_cols=117 Identities=25% Similarity=0.258 Sum_probs=83.4
Q ss_pred hhhhhchhHHHHhhHHHHHHc-CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCch-hhhHhhHHHHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQMA-SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKK-LALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~~~ 81 (177)
+....+......+.|.+.++. |.++.+ .........++..++.++.+++.||+|||+ .+..+..+..++.+......
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAE-AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 344455667777888888654 888777 778888889999999999999999999999 88888877777766554421
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 82 ISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+.. .+....+..|..|++.|++..
T Consensus 264 -----------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 303 (352)
T cd06174 264 -----------SLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGTAS 303 (352)
T ss_pred -----------cHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHHHH
Confidence 0222333334444444433 444458999999999999776
No 93
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.58 E-value=9.1e-08 Score=75.18 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=72.0
Q ss_pred HHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 13 VMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 13 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
...+.|.+.+++|.+.++ ..+......+...++.++.|+++||+|||+.++.+.++.++..++.+...
T Consensus 38 ~~~~~~~i~~~~g~s~~~-~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~----------- 105 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSE-TAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS----------- 105 (455)
T ss_pred hhhhHHHHHHHhCcchhH-HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh-----------
Confidence 455678888889998887 77777777777889999999999999999999988887777766554421
Q ss_pred HHHHHHHHH-HHHhhhhccccccccceeeccccccccccchh
Q 045175 93 YGWIAVIGL-ALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 93 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+.. .+.+.+.+....+.. .+..+.+| +.|+++.
T Consensus 106 ~~~~l~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~r~~a~ 145 (455)
T TIGR00892 106 NVIELYLTAGFITGLGLAFNFQPSL-TMLGKYFY-RRRPLAN 145 (455)
T ss_pred hHHHHHHHHHHHHHhcchhhhhHHH-HHHHHHHH-hhHHHHH
Confidence 011122222 222333332223333 67778886 6787775
No 94
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.57 E-value=4.5e-07 Score=69.12 Aligned_cols=126 Identities=18% Similarity=0.242 Sum_probs=88.5
Q ss_pred chhhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHH
Q 045175 2 QAFQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWA 80 (177)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 80 (177)
.++..+.+....+.+.|.++ .++|.+..+ +........+.+.+..+.+|+++||+|.+++++....++.++..+....
T Consensus 226 lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~-Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~ 304 (417)
T COG2223 226 LYFATFGGFVGFSAYLPMYLVTQFGLSPVT-AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF 304 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence 35677888888999999999 678998887 7788888888899999999999999999999998888888887555443
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...... ..................+.+-+... .+++.++|.+..+...
T Consensus 305 ~~~~~~----~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~~~~G~v~G 352 (417)
T COG2223 305 LTGFGH----GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFPKETGAVTG 352 (417)
T ss_pred cccccc----CcchHHHHHHHHHHHHHhccCcchhe-eechHHHHhhhhHHHH
Confidence 211111 11122223323333344445545455 8888999887766554
No 95
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.57 E-value=2.6e-07 Score=79.99 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=67.3
Q ss_pred HHHHHHcCCCCch-HHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175 18 PTIVQMASFQSNQ-LALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI 96 (177)
Q Consensus 18 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (177)
+.+...++.+.+. ...+..++..+...++.+++|+++||+|||++++.+.++.++..++........ ....
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~ 105 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG--------WFWL 105 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc--------cHHH
Confidence 3334455554332 135566677788889999999999999999999888776655554433322100 1222
Q ss_pred HHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.++...+.+.+.+ ...+..++++.|++|++.|+.+.
T Consensus 106 l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~ 141 (1146)
T PRK08633 106 AFAVTFLLGAQSA-IYSPAKYGIIPELVGKENLSRAN 141 (1146)
T ss_pred HHHHHHHHHHHHH-hhchHHHhhhHHhcCcccchhhh
Confidence 3333333333333 34445558999999999999876
No 96
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.56 E-value=1.7e-07 Score=71.77 Aligned_cols=108 Identities=14% Similarity=0.024 Sum_probs=68.3
Q ss_pred HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
..+.|.+. ++.|.+..+ .........++..++.++.+++.||+|||+.+..+.+...+..+..... ..+
T Consensus 258 ~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----~~~----- 327 (405)
T TIGR00891 258 QDLLPTYLKADLGLSPHT-VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI----GAN----- 327 (405)
T ss_pred hhhhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh----CCc-----
Confidence 34556666 567888877 7777778888899999999999999999999887766543332211111 110
Q ss_pred HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....+...+.+...... .+..+.+..|.+|++.|+++.
T Consensus 328 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 366 (405)
T TIGR00891 328 -VAVLGLGLFFQQMLVQGI-WGILPKHLGEYFPTDQRAAGL 366 (405)
T ss_pred -hHHHHHHHHHHHHHHccc-hhhHHHHHhhhCCcchhHHHh
Confidence 112222222222222222 233337889999999999876
No 97
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.55 E-value=3.2e-07 Score=69.87 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=77.6
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175 17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI 96 (177)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (177)
.+.+.+++|++++| ..++..+..+.+.+..++.|.+.||+|.|++...+.++..+-.+..+...... ++.
T Consensus 37 ~~~i~~~~~LS~~q-~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~---------~~~ 106 (417)
T COG2223 37 GVFIKSDFGLSEGQ-KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP---------STW 106 (417)
T ss_pred HhhhccccCCCHHH-HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC---------chH
Confidence 44555788999999 88899999999999999999999999999999999988888776666543211 112
Q ss_pred HHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.++...++.+..+....... .+.++.||++++|.+.
T Consensus 107 ~ll~~gll~G~~GasFav~m-~~~s~~fP~~~qG~Al 142 (417)
T COG2223 107 QLLVIGLLLGLAGASFAVGM-PNASFFFPKEKQGLAL 142 (417)
T ss_pred HHHHHHHHHhcccceehccc-ccccccCChhhhhHHH
Confidence 23333333333333333333 7999999999999887
No 98
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.55 E-value=3.7e-07 Score=69.75 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=85.1
Q ss_pred hhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175 16 YNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW 95 (177)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (177)
-.|.+.++.+++..+ ...+.+...+..-++-++.|.++||.+.|+.+-.++++.+++.+++++.. +..
T Consensus 51 a~p~l~e~~~lsk~~-lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~-----------s~~ 118 (448)
T COG2271 51 AMPALIEDGGLSKTQ-LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP-----------SLF 118 (448)
T ss_pred ccHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh-----------HHH
Confidence 367777788899988 88888889999999999999999999999999999999999998888742 233
Q ss_pred HHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...++..+-+.+-+.++.|.. ..++..+|+++||+..
T Consensus 119 ~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~ 155 (448)
T COG2271 119 LFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWW 155 (448)
T ss_pred HHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceE
Confidence 333334444555566777777 8999999999999876
No 99
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.54 E-value=1.1e-07 Score=73.37 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=54.4
Q ss_pred hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175 8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV 75 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 75 (177)
.+.+....|.|.+.++.|.+..+ ......+..++..++.++.+++.||+|||+.+..+..+..++.+
T Consensus 219 ~~~~~~~~~lp~~l~~~g~s~~~-ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~ 285 (393)
T PRK09705 219 GGYASLIAWLPAFYIEIGASAQY-SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFC 285 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCChhh-hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 45566778889988778988877 77778888899999999999999999999988877666555543
No 100
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.54 E-value=3e-07 Score=73.19 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=70.6
Q ss_pred hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHHh
Q 045175 6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFIS 83 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~ 83 (177)
.-.+.+....+.+.++ +++|++..+ +.+.............+++|+++|| +|||+.++.+.++..++.+++....
T Consensus 33 ~~~~~y~~~~~l~~yl~~~lg~s~~~-a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-- 109 (500)
T PRK09584 33 ERFGYYGLQGIMAVYLVKQLGMSEAD-SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-- 109 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3445677777888887 778998877 6666655555445556789999999 5999999999888887765554321
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc
Q 045175 84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY 128 (177)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 128 (177)
. ......+...+.+.+.+.. .+...++..|.+|++.
T Consensus 110 --~------~~~~l~~~~~l~gig~g~~-~~~~~~l~~~~f~~~~ 145 (500)
T PRK09584 110 --H------DAGIVYMGMATIAVGNGLF-KANPSSLLSTCYEKDD 145 (500)
T ss_pred --c------cHHHHHHHHHHHHHhhhcc-cCCHHHHHHHhcCCCc
Confidence 0 0112222223333333322 3343378999998653
No 101
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.53 E-value=1.6e-07 Score=55.50 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=56.7
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLT 68 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~ 68 (177)
++..+++......|.|.+.++.|++..+ .+.+..+..+...++.+++|+++||++|++..+....
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~-iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQ-IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 4566777888889999999999999998 8889999999999999999999999999888765443
No 102
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.50 E-value=4.4e-07 Score=70.44 Aligned_cols=117 Identities=17% Similarity=0.102 Sum_probs=69.0
Q ss_pred hhhhhchhHHHHhhHHHHHHc--CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhh-hHhhHHHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQMA--SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA-LSSLTGVIISLVLLSWA 80 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~ 80 (177)
++...+.+....|.|.++++. |.+..+ +........++..+|.+++|+++||++||+.. ....+...+.. +....
T Consensus 252 ~~~~~~~~~~~~~~p~~l~~~~~~~s~~~-~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~ 329 (412)
T TIGR02332 252 FCLTNTLSAINIWTPQILQSFNQGSSNIM-IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA 329 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHH-hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh
Confidence 344556677888999999775 455555 66778888888999999999999999987753 33333333322 11111
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... .............+.. ...+..+....|.+|++.|+++.
T Consensus 330 ----~~~------~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~ 371 (412)
T TIGR02332 330 ----TDH------NLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAI 371 (412)
T ss_pred ----cCC------HHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHH
Confidence 111 1111111111111111 11233446667889999999876
No 103
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.50 E-value=2e-07 Score=72.73 Aligned_cols=107 Identities=9% Similarity=0.061 Sum_probs=82.1
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
.+-.|.+.++.|+++.+....+...+..+..++.++.|+++||+|-|+++..+.+..+++.++.++.. .
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----------S 114 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----------S 114 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 34467777889999887466777888888999999999999999999999999999888887777642 1
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...+.+...+++.+-+..+ ..+.++...+|+++|++++
T Consensus 115 l~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~rat 152 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAA 152 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHH
Confidence 3334444455555544444 4448999999999999887
No 104
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.50 E-value=5.3e-07 Score=68.68 Aligned_cols=123 Identities=15% Similarity=0.016 Sum_probs=68.8
Q ss_pred hhchhHHHHhhHHHHHHcC--CCCchHHHHHHH----HHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHH
Q 045175 7 FTGINTVMYYNPTIVQMAS--FQSNQLALLLSL----AVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWA 80 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~----~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 80 (177)
+...+...+..+.+.++.. .++.+.....+. ...+...++.++.|+++||+|||++++.+.++..++.++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 85 (394)
T TIGR00883 6 WFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL 85 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC
Confidence 3444555666666665543 334331222222 1223335688999999999999999999888888777655442
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....... .......++...+.+.+.+... +....+..|.+|++.|+...
T Consensus 86 ~~~~~~~---~~~~~~~~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~ 134 (394)
T TIGR00883 86 PSYATIG---IWAPILLLLARLIQGFSLGGEW-GGAALYLAEYAPPGKRGFYG 134 (394)
T ss_pred CChhhhH---HHHHHHHHHHHHHHHhhccccc-cccHHHhhhcCCcccchHHH
Confidence 1100000 0000122333333333333333 33348999999999998765
No 105
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.49 E-value=1.4e-07 Score=74.18 Aligned_cols=100 Identities=10% Similarity=-0.098 Sum_probs=69.1
Q ss_pred HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175 23 MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA 102 (177)
Q Consensus 23 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (177)
+++.+..+ .........++..++.+++|+++||+|||+.+..+.++.+++.++...... ......++...
T Consensus 70 ~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~ 139 (465)
T TIGR00894 70 NFKWSGAL-QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG---------GGIALVVFCRV 139 (465)
T ss_pred CCCCCHHH-hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH---------cCchHHHHHHH
Confidence 45666666 667778888899999999999999999999999888877777655433210 00122333333
Q ss_pred HHhhhhccccccccceeeccccccccccchh
Q 045175 103 LYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+.+.+.+ ...+....+.+|.+|++.|++..
T Consensus 140 ~~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~ 169 (465)
T TIGR00894 140 IQGLAQG-SVSPATHKIIVKWAPPKERSRLL 169 (465)
T ss_pred HHHHhcc-cchhhHHHHHHhcCCHHHHHHHH
Confidence 4343333 33444448999999999999876
No 106
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.49 E-value=7.6e-07 Score=67.54 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=69.7
Q ss_pred chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175 9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA 87 (177)
Q Consensus 9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (177)
..+....+.|.+. +.+|.+..+ .........+...++.+++++++||+|||+.+..+.....++..++.... ....
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 316 (366)
T TIGR00886 240 SFLGVSSIFAMFFKDQFGLSKVT-AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VSPL 316 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CCcc
Confidence 3445566777777 456888777 77677777888899999999999999998887766655555443333211 1100
Q ss_pred CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
................+.+.+. .+.+.+|..| +.|++..
T Consensus 317 -----~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~g~~~ 355 (366)
T TIGR00886 317 -----SLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RATGAVS 355 (366)
T ss_pred -----hHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhcccHH
Confidence 1222222223333333433333 4478888887 4666543
No 107
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.48 E-value=7.4e-07 Score=70.24 Aligned_cols=117 Identities=16% Similarity=0.138 Sum_probs=72.4
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEec----ccCCchhhhHh-hHHHHHHHHHHHHHHHhc-
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLID----HFGRKKLALSS-LTGVIISLVLLSWAFISG- 84 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~~~-~~~~~~~~~~~~~~~~~~- 84 (177)
.....+.+.+.++.|.+... ...+..+..+...+..++.|+++| |+|||+.++.. .+...++.+++.......
T Consensus 21 ~l~~~~l~~yl~~lg~~~~~-~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 21 ALQLSLLTPYVQELGIPHAW-ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 44455566677889998877 888888888999999999999999 59999998764 444444443333221100
Q ss_pred ---C--CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccc
Q 045175 85 ---S--SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYR 129 (177)
Q Consensus 85 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R 129 (177)
. +...........++...+.....+....+.. ++++|.+|++.|
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~ 148 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDAR 148 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhH
Confidence 0 0000000011223333333444444555666 899999998865
No 108
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.47 E-value=2.9e-07 Score=72.53 Aligned_cols=116 Identities=14% Similarity=0.027 Sum_probs=75.2
Q ss_pred chhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175 9 GINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA 87 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (177)
+.+...++.|.+.++ .|.+..+ .........++..++.++.|++.||+|||+.+..+..+.+++....... .....
T Consensus 270 ~~~~~~~~~p~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~ 346 (485)
T TIGR00711 270 GLYGSFYLLPLYLQQVLGYTALQ-AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT--FTPDT 346 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc--CCCCC
Confidence 345566778888854 6888877 7778888888899999999999999999999888777666655433311 11111
Q ss_pred CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..........+.+.+.+....+.. ....+..|++.|+++.
T Consensus 347 -----~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~ 386 (485)
T TIGR00711 347 -----PFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGS 386 (485)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHH
Confidence 011222223333333333333444 5566778999998876
No 109
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.47 E-value=1.4e-07 Score=74.55 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=40.0
Q ss_pred hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc
Q 045175 11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60 (177)
Q Consensus 11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 60 (177)
+....+.|.++ ++.|++..+ +.....+..++..++.+++|+++||++||
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~-a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLET-AGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 34455677777 556998877 77888888899999999999999999876
No 110
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.46 E-value=3.7e-07 Score=70.54 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=76.2
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-----CCch-hhhHhhHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-----GRKK-LALSSLTGVIISLVL 76 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~ 76 (177)
++.|-........-.|.++++.|++.++ ......+... .+..+++|+++||+ |||| .++.+.++.+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~-ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 8 GFASGLPLALTSGTLQAWMTVEGLDIQT-IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 4556666677777889999999999988 6656554443 68899999999999 8876 566666666666544
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 77 LSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+... .... ..+.......+.+ .+.....+...++..|.+|+++|++..
T Consensus 85 l~~~---~~~~-----~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~ 132 (402)
T PRK11902 85 MAFC---PPHA-----ALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGA 132 (402)
T ss_pred HHhc---Cccc-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHH
Confidence 3332 1110 1122222222322 233333444458999999999998765
No 111
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.46 E-value=2.6e-07 Score=72.47 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=41.8
Q ss_pred hchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchh
Q 045175 8 TGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKL 62 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~ 62 (177)
...+....|.|.++++ .|++..+ .........++..++.+++|+++||+ |||..
T Consensus 267 ~~~~~~~~~~P~~l~~~~g~s~~~-~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~ 323 (452)
T PRK11273 267 LLRYGILDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 323 (452)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence 3345677888999955 6888776 76677777888889999999999999 55543
No 112
>PTZ00207 hypothetical protein; Provisional
Probab=98.45 E-value=3.2e-07 Score=73.89 Aligned_cols=115 Identities=9% Similarity=-0.034 Sum_probs=72.9
Q ss_pred hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
.|..+.+.|.+.+++|++..+ ..++..+.... ..+.++.|+++||+|||++++++.++..++.++.+........+
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~-l~~i~svg~~~-g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~-- 118 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRD-LSTITTVGIAV-GYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEG-- 118 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccC--
Confidence 456678888888999999887 55555443333 35666789999999999999999999999887776642111101
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+.+.+...+.+.+.+....... ....+.|| +.||...
T Consensus 119 ---s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~Fp-~~RG~a~ 157 (591)
T PTZ00207 119 ---SVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVFP-SNRGAVV 157 (591)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCh-hhhHHHH
Confidence 122223333333333222222233 56788887 6788776
No 113
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.45 E-value=4.6e-07 Score=68.84 Aligned_cols=120 Identities=22% Similarity=0.265 Sum_probs=69.0
Q ss_pred hhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhH-hhHHHHHHHHHHHHHHHhc
Q 045175 7 FTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALS-SLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (177)
.........+.|.+. +..|.+..+ .........++..++.++.++++||+|||+..+. ......+..+.........
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (399)
T TIGR00893 228 NIGLGFFLTWFPTYLVQERGLSILE-AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT 306 (399)
T ss_pred HhHHHHHHHHHHHHHHHHhcccHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 344456667778777 456877766 7777788888899999999999999999862211 1111111111111111111
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... . .....+...... ....+..+..+.+..|.+|++.|+++.
T Consensus 307 ~~~----~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (399)
T TIGR00893 307 NYV----N-IPYAALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTG 349 (399)
T ss_pred ccc----h-hHHHHHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHH
Confidence 100 0 111222222222 222234566668999999999999876
No 114
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.44 E-value=8.5e-07 Score=68.53 Aligned_cols=59 Identities=19% Similarity=0.086 Sum_probs=48.0
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhh
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLAL 64 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~ 64 (177)
.+..+.+....|.|.+.++.|.+..+ .........++..++.++.|+++||+|||+.+.
T Consensus 233 ~~~~~~~~~~~~~p~~~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 233 INTIGLFGFAVFLPMFVAELGFSTSE-WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 34455667778899998888988877 666667778889999999999999999988764
No 115
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.40 E-value=1.1e-06 Score=68.87 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=53.2
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL 76 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 76 (177)
+++.+.++...+++.|++.++ .++... ......+..+...++.+++|+++||+|||++++++.++..++...
T Consensus 261 y~~tFG~fvg~s~~lp~~~~~-~~~~~~-~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~ 332 (462)
T PRK15034 261 YLATFGSFIGFSAGFAMLAKT-QFPDVN-ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSAL 332 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HcChHH-HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 456677777788889998855 333333 333445556778899999999999999999999888877766543
No 116
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.40 E-value=4.9e-07 Score=65.30 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=79.3
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
..|....|.|.+-++.|+++++ ...+.....++..+ .++.|.+.|++|+|.+++++.+...++...+........+.
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~-l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~- 93 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQ-LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPS- 93 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHH-HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCc-
Confidence 4678889999999999999998 88888888888776 48889999999999999999999888887665554333221
Q ss_pred cchhHHHHHHHHHHHHhhhhcccc-ccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGM-GPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+.+.+..... ..+.+.++ ...........||. .||++.
T Consensus 94 ----~~~~~~~~~~~-l~~~s~~~~~ta~lvt~~~NFP~-~RG~vv 133 (250)
T PF06813_consen 94 ----LPVWLMCLFLF-LGGNSSCWFNTASLVTCVRNFPR-SRGTVV 133 (250)
T ss_pred ----cchHHHHHHHH-HHcccHHHhhhHHHHHHHHhCcc-ccCcee
Confidence 12222222222 22223222 22222445577885 799876
No 117
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.39 E-value=1.1e-06 Score=67.71 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=55.1
Q ss_pred hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS 73 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~ 73 (177)
+..+.+......+.|.+. ++.|.+..+ .........++..++.++.|+++||+|||+.++.+.....+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 12 FLYFFIMSAYFPFFPIWLHDVNGLSKTD-TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL 81 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 445555566667777777 567999888 888888999999999999999999999999998766555443
No 118
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.38 E-value=2.3e-07 Score=71.43 Aligned_cols=109 Identities=22% Similarity=0.177 Sum_probs=66.8
Q ss_pred hhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 10 INTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
......+.|.+.++.|.+. .........++..++.++.+++.||+|||+.+..+.++.+++.+......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------- 300 (399)
T PRK05122 232 FGTIATFITLYYAARGWDG---AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP-------- 300 (399)
T ss_pred HHHHHHHHHHHHHHccccc---chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 3445566677776666632 33445566777788999999999999999988877776666654433311
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+.+.+....... ....|..|++.|+++.
T Consensus 301 ---~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 340 (399)
T PRK05122 301 ---SPWMALIGAALTGFGFSLVFPALG-VEAVKRVPPQNRGAAL 340 (399)
T ss_pred ---cHHHHHHHHHHHHHhHHHHHHHHH-HHHHHhCCHHHHHHHH
Confidence 122223333333333332222222 5667889999998876
No 119
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.38 E-value=5.2e-07 Score=68.43 Aligned_cols=111 Identities=15% Similarity=0.065 Sum_probs=65.6
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-----CCchhh-hHhhHHHHHHHHHHHHHHHhc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-----GRKKLA-LSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (177)
...+.-.|.+.++.|++.++ ..+.... .+...+ .+++|+++||+ ||||.+ +.+.+..+++....... .
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~---~ 78 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKT-IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL---V 78 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHH-HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC---C
Confidence 34455678888999999887 5555543 333333 88999999997 898875 45555555554333321 1
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... ..........+.. .......+...++..|.+|++.|+.+.
T Consensus 79 ~~~-----~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~ 121 (356)
T TIGR00901 79 PST-----DLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGS 121 (356)
T ss_pred cch-----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHH
Confidence 111 1111222222222 222223344448899999999999776
No 120
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.37 E-value=4e-07 Score=68.73 Aligned_cols=106 Identities=19% Similarity=0.004 Sum_probs=72.3
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
+...|..-..+|.+.-+ ...++.....+..+++..+|.++|++|||+.+.......++...+-+.. +.
T Consensus 98 s~i~~~l~~~w~~s~~q-~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s-----------pn 165 (528)
T KOG0253|consen 98 SLILPALDEVWGPSEGQ-APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS-----------PN 165 (528)
T ss_pred HHHHHHHHhhhchhhhh-hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC-----------CC
Confidence 33445555667766666 6677777888899999999999999999999888777766665433321 11
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++.+..+.+++. .|..-++-.|..|...|...+
T Consensus 166 f~~L~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~ 203 (528)
T KOG0253|consen 166 FASLCVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLT 203 (528)
T ss_pred eehhhHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcch
Confidence 23344445554444443 444337889999999998776
No 121
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.37 E-value=1.2e-06 Score=67.61 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175 13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS 73 (177)
Q Consensus 13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~ 73 (177)
...+.|.+. ++.|.+..+ .........++..++.+++|+++||+|||+.+..+.+...+.
T Consensus 235 ~~~~~p~~l~~~~~~~~~~-~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~ 295 (393)
T PRK15011 235 YIINMPLFIINELHLPEKL-AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF 295 (393)
T ss_pred HHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 445677777 557888766 555555666677889999999999999999877655544433
No 122
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.36 E-value=2.6e-07 Score=72.68 Aligned_cols=110 Identities=11% Similarity=-0.076 Sum_probs=64.3
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchhhhHhh--HHHHHHHHHHHHHHHhcCC
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKLALSSL--TGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~ 86 (177)
+....+.|.+.++.|.+..+ ......+..++..++.+++++++||. ++|+...... +..+++.+..... +
T Consensus 258 ~~~~~~l~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----~ 331 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGVDEYE-AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA-----G 331 (455)
T ss_pred cchHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh-----c
Confidence 34445667777778888877 77777778888899999999999973 3343333222 2222222211111 0
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+...+.+...+.. .+..+++..|.+|++.|+++.
T Consensus 332 ------~~~~~~i~~~~~G~~~g~~-~~~~~~~~~~~~~~~~~g~~~ 371 (455)
T TIGR00892 332 ------DYTGLVIYCIFFGLSFGSV-GALLFEVLMDLVGAQRFSSAV 371 (455)
T ss_pred ------hHHHHHHHHHHHHHHhchH-HHHHHHHHHHHhhHHHHhhHH
Confidence 1222233334444433333 334447888999999888876
No 123
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.35 E-value=8.4e-07 Score=66.94 Aligned_cols=107 Identities=10% Similarity=-0.065 Sum_probs=72.1
Q ss_pred HhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 15 YYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 15 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
.+.|.+.++ .|.+..+ .........++..++.++.+++.||+|||+.+..+..+.+++........ . .
T Consensus 232 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~ 300 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTH-YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP---------P-N 300 (365)
T ss_pred HHhHHHHHHHhCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc---------h-h
Confidence 667888755 7888777 77777778888899999999999999999988877665555554333211 0 0
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....+...+.+.+.+.. .+..+++..|..|++.|++..
T Consensus 301 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 339 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVF 339 (365)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHH
Confidence 222233333334333333 344448899999999998775
No 124
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.35 E-value=2.7e-07 Score=75.38 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=84.7
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcC--C--
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGS--S-- 86 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 86 (177)
.....-.+++.++++++..+ ..++.+...++..++.++.+++.||.|||+.+.++.++.+++.++.+....... .
T Consensus 50 g~~~~~l~~iek~F~lss~~-~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSS-SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred HHHHhhchhhhhhhCCCCCc-ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence 33444456777889999888 888888899999999999999999999999999999999999887765431110 0
Q ss_pred -------------------C-------------Ccc-h--hHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175 87 -------------------A-------------SSS-E--VYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI 131 (177)
Q Consensus 87 -------------------~-------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 131 (177)
. ... . ...+..+++.+++.+.......+...+++.|.+|++.|+.
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~ 208 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL 208 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence 0 000 0 0122333333444434333444555599999999999998
Q ss_pred hh
Q 045175 132 CG 133 (177)
Q Consensus 132 ~~ 133 (177)
..
T Consensus 209 ~~ 210 (633)
T TIGR00805 209 YI 210 (633)
T ss_pred HH
Confidence 76
No 125
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.34 E-value=5.4e-07 Score=72.44 Aligned_cols=102 Identities=21% Similarity=0.092 Sum_probs=73.3
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHH
Q 045175 17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWI 96 (177)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (177)
.+.+.++.|-++. ..|+.....+...++.++.|.++|.+|||..++.+.++..++.+..+... ....
T Consensus 67 l~~I~~diG~~~~--~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----------~~~~ 133 (599)
T PF06609_consen 67 LPYINADIGGSDN--WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----------NMNT 133 (599)
T ss_pred HHHHHHhcCCCcc--chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----------cHHH
Confidence 3555677776654 55667777888899999999999999999999999999888887765432 1233
Q ss_pred HHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 97 AVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+....+.+.+. +.....+..++|+.|.+.|..+.
T Consensus 134 ~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~ 168 (599)
T PF06609_consen 134 FIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGL 168 (599)
T ss_pred HHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHh
Confidence 444455544433 33334446789999999998776
No 126
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.33 E-value=1.3e-06 Score=69.39 Aligned_cols=115 Identities=15% Similarity=0.070 Sum_probs=75.9
Q ss_pred chhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175 9 GINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA 87 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (177)
+.+...++.|.+++. .|.+..+ +........++..++.++.|++.||+|||+.+..+.++..++.+.+... ....
T Consensus 274 ~~~~~~~~~~~~lq~v~g~s~~~-ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~~~ 349 (495)
T PRK14995 274 TLVGFELLMAQELQFVHGLSPLE-AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DFST 349 (495)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cCCC
Confidence 344556677877754 6888887 7778888888899999999999999999998887777666555433321 1111
Q ss_pred CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..........+.+.+.+....+.. ....+..|++.|+.+.
T Consensus 350 -----~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~ 389 (495)
T PRK14995 350 -----QQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAG 389 (495)
T ss_pred -----chHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHH
Confidence 022223333444444443333344 6677889999998876
No 127
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.30 E-value=2.1e-06 Score=65.71 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=76.7
Q ss_pred hhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 6 QFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
.+..-+++.-|.|.++ +..|++... +.+..+.+-.++++|++++||++||+ |||..+-..+.+.....++. ..
T Consensus 264 vYivR~gi~dW~p~YL~e~k~~s~~~-a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~--~w- 339 (448)
T COG2271 264 VYVVRYGINDWGPLYLSEVKGFSLVK-ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVL--YW- 339 (448)
T ss_pred HHHHHHHHhhhHHHHHHHhcCCCHHH-HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH--HH-
Confidence 3444578889999999 556899888 88999999999999999999999995 78877654443333332221 11
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+.. +..+.....+..+++-.++..+.-....|..|++.-|++.
T Consensus 340 ~~~~~------~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~ 384 (448)
T COG2271 340 LAPNG------SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTAT 384 (448)
T ss_pred cCCCc------cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchh
Confidence 11111 2222222222223333444444447889999999988887
No 128
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.29 E-value=2.5e-06 Score=66.73 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=42.2
Q ss_pred hhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCch
Q 045175 7 FTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKK 61 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~ 61 (177)
....+....|.|.++++ .|++..+ +.+...+..+...++.+++|+++||++|++
T Consensus 264 ~~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 264 YLLRYGVLDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHHHHHHHHhHHHHHHHccCCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 34446677888999865 5888776 777777788888999999999999996543
No 129
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.29 E-value=1.8e-06 Score=66.12 Aligned_cols=114 Identities=6% Similarity=-0.039 Sum_probs=60.6
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc---hhhhH-hhHHHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK---KLALS-SLTGVIISLVLLS 78 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr---~~~~~-~~~~~~~~~~~~~ 78 (177)
.++.....+....|.|+++++.|++.. ......+..+.+.++ .++++||..|| +.... ...+.++......
T Consensus 201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~--~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~ 275 (368)
T TIGR00903 201 LGFGVALFDNLAIWLEAALRPAGLEDI--AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALA 275 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888999999987787643 333344444444444 57788887654 33222 2222222221111
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 79 WAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
. ..+ .........+.+.. .....+..+++.+|.+|++.|+++.
T Consensus 276 ~----~~~-------~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~rgt~~ 318 (368)
T TIGR00903 276 F----ELN-------RLALFAFIGIAGLL-MLPAYAIIMDWIGKFCDKELHGKAA 318 (368)
T ss_pred H----ccc-------cHHHHHHHHHHHHh-hhhhHHHHHHHHHHhcchhhcCccc
Confidence 1 000 11222222222222 2222233458999999999999987
No 130
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.27 E-value=2.7e-06 Score=64.90 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=52.6
Q ss_pred chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHH
Q 045175 9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLS 78 (177)
Q Consensus 9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 78 (177)
..+....+.|.+. ++.|.++.+ .........++..++.++.+++.||+|||+.+..+..+..++.+...
T Consensus 221 ~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 221 GFFAFFSGAPFVYIDIMGVSPSV-FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HHHHHHHcChHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777 467888777 77777778888899999999999999999988877666666554443
No 131
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.26 E-value=2e-06 Score=65.18 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=64.3
Q ss_pred chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-CchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-RKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
.......+.|.+. +..|.+..+ .........++..++.++.+++.||.. ||+..+. ........+...... ....
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 307 (379)
T TIGR00881 231 VRTGILDWSPLYLTQEKGFSKEK-ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALIIVSLLVYW-LNPA 307 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHHHHHHHHh-cCcc
Confidence 3455666778877 556888777 777778888889999999999999864 3333222 111111111111111 1001
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
. ......+.....+. ...+..+..+.+..|.+|++.|+++.
T Consensus 308 ~-----~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~ 348 (379)
T TIGR00881 308 A-----NPLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAA 348 (379)
T ss_pred h-----hHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHH
Confidence 0 01122222222222 22233333346789999999999876
No 132
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.26 E-value=6e-07 Score=58.31 Aligned_cols=83 Identities=19% Similarity=0.107 Sum_probs=55.4
Q ss_pred HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccce
Q 045175 39 VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWT 118 (177)
Q Consensus 39 ~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (177)
..++..++.++.+++.||+|||+.+..+.....++.+...... ......+...+.+...+. ..+..+.
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~-~~~~~~~ 74 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----------NITVLIIARFLQGFGAAF-ALVAGAA 74 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHHH-HHHhHHH
Confidence 4566788999999999999999999888777776665443321 122233333333333332 2344458
Q ss_pred eeccccccccccchh
Q 045175 119 VNSEVYREQYRGICG 133 (177)
Q Consensus 119 ~~~e~~p~~~R~~~~ 133 (177)
+..|.+|++.|++..
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (141)
T TIGR00880 75 LIADIYPPEERGVAL 89 (141)
T ss_pred HHHHHCChhhhhHHH
Confidence 899999999998776
No 133
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.25 E-value=1.6e-06 Score=68.31 Aligned_cols=99 Identities=15% Similarity=0.016 Sum_probs=73.4
Q ss_pred cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 045175 24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLAL 103 (177)
Q Consensus 24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (177)
++.+.++ ..++......+.+++.+.+|+++||+|-|+++..+.++.++..++....... ..+..++.+.+
T Consensus 68 ~~ws~~~-k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---------~~~~~~~~R~l 137 (466)
T KOG2532|consen 68 YDWSSTE-KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---------GFYLLLVLRFL 137 (466)
T ss_pred ecCCHHH-HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---------cchhhHHHHHH
Confidence 4556666 6667777888899999999999999999999999999988888776665421 12233444444
Q ss_pred Hhhhhccccccccceeeccccccccccchh
Q 045175 104 YITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+...+..+.... .+.....|+++|++..
T Consensus 138 qGl~~g~~~pa~~-~i~~~W~P~~Ers~~~ 166 (466)
T KOG2532|consen 138 QGLGQGVLFPAIG-SILAKWAPPNERSTFI 166 (466)
T ss_pred hHHHHhHHHhhhh-ceeeeECCHHHHHHHH
Confidence 4445555545555 8999999999999876
No 134
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.25 E-value=6.6e-06 Score=64.04 Aligned_cols=116 Identities=17% Similarity=0.037 Sum_probs=68.6
Q ss_pred hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchh-hhHhhHHHHHHHHHHHHHHHhc
Q 045175 11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKL-ALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
.....|.+.++ +..|++... ...+..+..+...+..++.|+++|| +||||. ++.+....+++.+++.. .+
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~-~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~---~~ 91 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAF-VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT---TP 91 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHH-HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh---CC
Confidence 34444555555 678999888 8888888889999999999999998 677554 55666655555433322 11
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccc-cccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~ 133 (177)
... . ........+...++....+....+.. ++..|+.+ +++|++..
T Consensus 92 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~R~~~~ 138 (437)
T TIGR00792 92 DFS-A-TGKLVYAYITYILLGLFYSFVNIPYW-SLVPAITLDPRERESLS 138 (437)
T ss_pred CCC-c-chHHHHHHHHHHHHHHHHHhhcccHh-hCcccccCCHHHHHHHH
Confidence 111 0 01112222233333444443333333 78888874 57787654
No 135
>PRK12382 putative transporter; Provisional
Probab=98.25 E-value=2.8e-06 Score=65.27 Aligned_cols=110 Identities=21% Similarity=0.201 Sum_probs=68.7
Q ss_pred chhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 9 GINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
+......+.|.+.++.|.+. .........++..++.++.+++.||+|||+.+..+..+.++..+..... ++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~~- 301 (392)
T PRK12382 231 GFAVIGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----PT- 301 (392)
T ss_pred HHhHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----cc-
Confidence 34455566777776666643 3334455666678899999999999999999888777776665443321 11
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....+...+.+.+.+....... +...|.+|++.|++..
T Consensus 302 -----~~~~~~~~~l~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 340 (392)
T PRK12382 302 -----AWVALAGAALTGAGCSLIFPALG-VEVVKRVPSQVRGTAL 340 (392)
T ss_pred -----HHHHHHHHHHHHHHHHhHHHHHH-HHHHHhcCHHHHHHHH
Confidence 22233333333333332222233 6778889999999876
No 136
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.25 E-value=1.5e-06 Score=67.70 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=69.7
Q ss_pred HHHhhHHHHHHcCCCC--------chHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 13 VMYYNPTIVQMASFQS--------NQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 13 ~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
...+.|.+.++.|.+. +. ......+..+...++.++.++++||+|||++++.+.++.+++.......
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~-~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~---- 301 (418)
T TIGR00889 227 TNIFGNGFLHEFGRNPEFADSFVVKN-ASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG---- 301 (418)
T ss_pred HHHhHHHHHHHhcccccccchhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----
Confidence 3345566666666443 22 4566666777888999999999999999999998888777765444331
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... ........+...+.+...+....... .++.|.+|++.|+++.
T Consensus 302 ~~~---~~~~~~l~l~~~l~g~~~~~~~~~~~-~~i~~~~p~~~~g~~~ 346 (418)
T TIGR00889 302 DPE---YFGYALLFLSMIVYGCAFDFFNISGS-VFVEKEVPVHIRASAQ 346 (418)
T ss_pred Ccc---hhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHH
Confidence 000 00011222233333333333323333 7889999999999886
No 137
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.24 E-value=2.8e-06 Score=64.64 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
...+.|.+. ++.|.+..+ .............++.++.+++.||+|||+.+..+.+...++.
T Consensus 218 ~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 279 (375)
T TIGR00899 218 YIINMPLLIIHELGLPDKL-AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFY 279 (375)
T ss_pred HHhhhHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 344556666 667888776 5556555566677888999999999999998877666544443
No 138
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.24 E-value=4.1e-06 Score=65.07 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=54.2
Q ss_pred hhhhhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS 73 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~ 73 (177)
+....+......+.|.+.+ ++|++..+ .....+...+...++.++.|+++||+|||+.++++..+.+++
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~-~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 20 FFFFFIWSSWFSFFPIWLHDINGLSGTD-TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 3444445566777777774 48999888 888889999999999999999999999999987765554433
No 139
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.23 E-value=3.9e-06 Score=72.84 Aligned_cols=110 Identities=16% Similarity=0.012 Sum_probs=74.3
Q ss_pred hHHHHhhHHHH-HHcCCCCc-hHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 11 NTVMYYNPTIV-QMASFQSN-QLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 11 ~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
.....+.|.+. +.+|.+.. . ..++.....++.+++.++.++++||+++|+.+.++.++.+++.+++....
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~-~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------- 320 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQ-VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP------- 320 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-------
Confidence 34445566666 56788877 5 77777878888899999999999999999888877776666655444321
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+++.+.+....+. +++..+..|++.|+++.
T Consensus 321 ----~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~ 360 (1146)
T PRK08633 321 ----SLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVL 360 (1146)
T ss_pred ----hHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhh
Confidence 12223333334443333333333 48889999999999875
No 140
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.22 E-value=3e-06 Score=65.05 Aligned_cols=112 Identities=10% Similarity=-0.117 Sum_probs=79.0
Q ss_pred hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175 8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA 87 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (177)
.+......+.|.+.++.|.+... .........+..+++.++.+++.||+|+|+.+..+.+...+..+......
T Consensus 219 ~~~~~~~~~~~~~l~~~g~s~~~-~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~------ 291 (382)
T TIGR00902 219 GAHAAYYGFSAIYWQAAGISASA-TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE------ 291 (382)
T ss_pred HHHHHHHHHHHHHHHHCCCCHhH-HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh------
Confidence 33455556777777888998887 66666678888889999999999999999999988888888876654421
Q ss_pred CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+...+...+.+..++....... .++.+. |++.|+++.
T Consensus 292 -----~~~~~~~~q~l~g~~~~~~~~~~~-~~i~~~-~~~~~~~~q 330 (382)
T TIGR00902 292 -----AFPLIFLLQILHCGTFAVCHLAAM-RYIAAQ-PGSEIAKLQ 330 (382)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHH-HHHHhC-CHhhHHHHH
Confidence 123334444555555555444444 677777 888887554
No 141
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.21 E-value=4.4e-06 Score=72.60 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
..+...+..+...++.+++|+++||+|||+++.....+.++.......... .. +...++...+..+.....
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-~~--------s~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-LN--------SVPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-Hh--------hHHHHHHHHHHHHHHHHh
Confidence 455566677888899999999999999999864422222222221111111 00 223344444444444445
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+...+++.+++|++.|+.++
T Consensus 125 ~~p~~~a~l~~~~~~~~~~~a~ 146 (1140)
T PRK06814 125 FGPIKYSILPDHLNKDELLGAN 146 (1140)
T ss_pred hchHHHHhhHhhcCccccchhh
Confidence 5666669999999999999876
No 142
>PRK10504 putative transporter; Provisional
Probab=98.21 E-value=3e-06 Score=66.69 Aligned_cols=114 Identities=11% Similarity=0.152 Sum_probs=71.6
Q ss_pred hhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 10 INTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 10 ~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
......+.|++.+ ..|.+... ..+......++..++.++.+++.||+|||+.+..+..+.++..+++... ....
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~- 351 (471)
T PRK10504 277 SGMLPFMTPVFLQIGLGFSPFH-AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV---ALLG- 351 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc---cccc-
Confidence 3444566788876 47877766 6667777777778888999999999999999888777666665443321 1111
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+.....+.+.+....+.. .+..+..|++.|+.+.
T Consensus 352 ----~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 391 (471)
T PRK10504 352 ----WYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGN 391 (471)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchH
Confidence 011112222222233333333333 7777889999998875
No 143
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.20 E-value=6.4e-06 Score=64.23 Aligned_cols=114 Identities=16% Similarity=0.051 Sum_probs=70.7
Q ss_pred HhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEec----ccCCchhhh-HhhHHHHHHHHHHHHHHHhcCCCC
Q 045175 15 YYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLID----HFGRKKLAL-SSLTGVIISLVLLSWAFISGSSAS 88 (177)
Q Consensus 15 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (177)
.|.+.++ +..|++... ...+..+..+...+..++.|.++| |+|||+.++ ++.+..+++.+++.. ..+.+.
T Consensus 22 ~~~~~f~~~~~gl~~~~-~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~---~~p~~~ 97 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPAL-AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFS---PPPAGL 97 (428)
T ss_pred HHHHHHHHHHcCCCHHH-HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhc---cccchh
Confidence 3444444 677999877 777777788888999999999999 799777654 566666665543332 111010
Q ss_pred cchhHHHHHHHHHHHHhhhhccccccccceeecccccc-ccccchh
Q 045175 89 SSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGICG 133 (177)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~ 133 (177)
+......+..+...++...++....+.. ++.+|+.+. ++|....
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~ 142 (428)
T PF13347_consen 98 SFTAKLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLS 142 (428)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHH
Confidence 0011122234444555555555544444 899999985 5777665
No 144
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.18 E-value=4.6e-06 Score=65.18 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=38.8
Q ss_pred hhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc
Q 045175 10 INTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF 57 (177)
Q Consensus 10 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 57 (177)
.+....|.|.++ ++.|++..+ +........++..++.++.|+++||+
T Consensus 259 ~~~~~~~~p~~l~~~~g~s~~~-a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 259 RAAINDWGNLYMSETLGVDLVT-ANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 345566788888 567888877 77777888888999999999999998
No 145
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.18 E-value=5.2e-06 Score=63.67 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=49.6
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV 75 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 75 (177)
.....+.|.+.++.|.+.+. .........+...++.++.+++.||+|||+.+..+.....++.+
T Consensus 217 ~~~~~~lp~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 280 (381)
T PRK03633 217 GSLYGLMPLYLNHQGMSDAS-IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI 280 (381)
T ss_pred HHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 34455678888778888776 66666677788899999999999999999988777666665543
No 146
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.18 E-value=1.1e-05 Score=61.86 Aligned_cols=62 Identities=11% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175 14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL 76 (177)
Q Consensus 14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 76 (177)
..|.+.+. +..|.+..+ .........++..++.++.+++.||+|||+.+..+..+.++..+.
T Consensus 219 ~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~ 281 (382)
T PRK10091 219 FSYIKPYMMFISGFSETS-MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLM 281 (382)
T ss_pred HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHH
Confidence 34445455 557888877 777778888889999999999999999999988777766665543
No 147
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.17 E-value=6.1e-06 Score=62.58 Aligned_cols=69 Identities=12% Similarity=0.026 Sum_probs=51.8
Q ss_pred hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-CchhhhHhhHHHHHHHHHH
Q 045175 8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-RKKLALSSLTGVIISLVLL 77 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~ 77 (177)
...+....|.|.+.++.|.+..+ .........++..++.++.|++.||++ ||+.+..+..+.+++.+..
T Consensus 211 ~~~~~~~~~lp~~~~~~g~~~~~-~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T TIGR00896 211 GLYYSLIGWLPAILISHGASAAT-AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL 280 (355)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence 34455667889888888888777 777778888899999999999999994 5666666666555554433
No 148
>PRK03699 putative transporter; Provisional
Probab=98.17 E-value=3.3e-06 Score=65.10 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=51.3
Q ss_pred hchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH
Q 045175 8 TGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS 73 (177)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~ 73 (177)
.+.+....|.|.+. +..|++..+ .........++..++.++.++++||++||+.+.....+..+.
T Consensus 219 ~~~~~~~~~~p~~l~~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 219 LAQLTFISWVPEYAQKKFGMSLED-AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHH-hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 34456678899998 557998877 777777778888999999999999999999887666554443
No 149
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.16 E-value=4.1e-06 Score=66.58 Aligned_cols=116 Identities=11% Similarity=0.026 Sum_probs=68.0
Q ss_pred hhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-----CCchh-hhHhhHHHHHHHHHHHH
Q 045175 6 QFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-----GRKKL-ALSSLTGVIISLVLLSW 79 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~ 79 (177)
+-..........|.+.++.|.+.++ ......+ ... .++.+++++++||+ |||+. ++.+.+..+++....+.
T Consensus 24 ~gl~~~~~~~~l~~~l~~~g~~~~~-ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~ 100 (491)
T PRK11010 24 SGLPLALTSGTLQAWMTVENIDLKT-IGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGF 100 (491)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 3444455566678888888888776 4443222 222 36899999999999 99886 55666655555544333
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 80 AFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.. +.. ......+...+.+...+ ...+...++..|.+|+++|+.+.
T Consensus 101 ~~---~~~-----~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~ 145 (491)
T PRK11010 101 LE---PGT-----QLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGA 145 (491)
T ss_pred cC---Ccc-----hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHH
Confidence 21 111 01122222233333222 33444458999999999999765
No 150
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.15 E-value=6e-06 Score=62.98 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=49.5
Q ss_pred hchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 8 TGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
.+.+....+.|.+. +..|.+..+ .........++..++.++.+++.||+|||+.+..+.....+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~ 274 (377)
T PRK11102 208 AGMFSFLTAGPFVYIELNGVSPQN-FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHcCHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 33444455566666 557888777 7777778888899999999999999999999887776544433
No 151
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.11 E-value=7.7e-06 Score=62.71 Aligned_cols=117 Identities=20% Similarity=0.172 Sum_probs=80.0
Q ss_pred hhhhhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
+...-|++.+......+-. .+|++..+ ........++.+++|++++|++.||+|.|+++..+.++..+..+......
T Consensus 262 ~~~~DGv~til~~~~~fg~~~~gls~~~-lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~- 339 (438)
T COG2270 262 FFYIDGVNTILAMGGVFGAADLGLSSTE-LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE- 339 (438)
T ss_pred HHHHhhHHHHHHHHHHHHHHHcCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-
Confidence 3445567777777777774 78999888 88888889999999999999999999999998888777766654433321
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
. .....++..+.+...+.. .+..=+|.+++.|+++-+...
T Consensus 340 --------~--~~~f~i~gll~g~s~G~~-qA~SRSy~~~lvp~~k~~~fF 379 (438)
T COG2270 340 --------G--ELDFWILGLLVGTSLGGA-QASSRSYLARLVPKGKEGRFF 379 (438)
T ss_pred --------c--cHHHHHHHHHHHHhcchH-HHHHHHHHHHhCCCcccccee
Confidence 1 111222223333333333 333338999999988765443
No 152
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.09 E-value=1.5e-06 Score=68.62 Aligned_cols=95 Identities=14% Similarity=-0.048 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
......+..++.+++.+++++++||+|+|+.+..+..+.+++.+....... ...+ .....++...+.+.+.+.
T Consensus 268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~i~~~l~g~~~~~- 340 (473)
T PRK10429 268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-AAPH-----NALLIVIAGILLNIGTAL- 340 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-cCch-----hHHHHHHHHHHHHHHHHH-
Confidence 344555556778899999999999999999988777665555433322111 1111 122222222333333332
Q ss_pred cccccceeeccccc-----cccccchh
Q 045175 112 MGPVPWTVNSEVYR-----EQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p-----~~~R~~~~ 133 (177)
..+..+++.+|..+ +..|..+.
T Consensus 341 ~~~~~~am~ad~id~~e~~tG~R~~G~ 367 (473)
T PRK10429 341 FWVLQVIMVADTVDYGEYKLGIRCESI 367 (473)
T ss_pred HHHHHHHHHhhhhhhhhHhcCccchhH
Confidence 23445578888844 55565554
No 153
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.08 E-value=2.4e-06 Score=64.23 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=75.7
Q ss_pred chhHHHHhhHHHH-HHcCCC-CchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCC
Q 045175 9 GINTVMYYNPTIV-QMASFQ-SNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 9 ~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
.......+.|.+. +..|.+ ..+ ......+..+...++.++.+++.||+|+|+..........+..+........
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 296 (352)
T PF07690_consen 221 VFSGFSFFLPLYLQEVLGFSGPSQ-AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--- 296 (352)
T ss_dssp HHHHHHHHHHHHCCHHHHCCTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH---
T ss_pred HHHHhhcccchhhhhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 4455777888874 777888 455 6667777888888999999999999999888777666666555444332211
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.......+...+.+.+.+.. .+....+..|..|++.|++..
T Consensus 297 -----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 337 (352)
T PF07690_consen 297 -----SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAF 337 (352)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHH
Confidence 01222333333444433333 344448999999999998765
No 154
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.06 E-value=5.8e-06 Score=65.41 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=78.3
Q ss_pred hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc--hhhhHhhHHHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK--KLALSSLTGVIISLVLLSWA 80 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~ 80 (177)
+....|.+.+......+. +.+|++..+ ......+..+.+.+|+++++++.||+|.| ++++...++..+..+....-
T Consensus 291 ~l~~dg~~ti~~~~~i~a~~~lg~s~~~-l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G 369 (477)
T PF11700_consen 291 FLYSDGVNTIISFAGIYATEVLGMSTTQ-LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFG 369 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 444456677777777777 578999988 77888888999999999999999999998 77666665553333221110
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+.. + .+...+...+.+...+ +..+..-++.+|+.|+...+...
T Consensus 370 ~~~~~~g~~-~--~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efF 418 (477)
T PF11700_consen 370 FWPSFFGLK-S--PWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFF 418 (477)
T ss_pred hhhcccCcc-c--HHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHH
Confidence 000010100 1 2222222333333333 34455558999999998887554
No 155
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.04 E-value=1.1e-05 Score=62.71 Aligned_cols=89 Identities=11% Similarity=-0.071 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
......+..++..++.+++|++.||+|||+.+..+.++.++..++..... ..+...+...+.+...+..
T Consensus 264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-----------~~~~~~~~~~l~g~~~~~~ 332 (420)
T PRK09528 264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-----------GPLEVSILKLLHAFEVPFL 332 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHHH
Confidence 45566666777789999999999999999998887777666655444311 0222222222322222222
Q ss_pred cccccceeeccccccccccch
Q 045175 112 MGPVPWTVNSEVYREQYRGIC 132 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~ 132 (177)
.. ....+..|.+|++.|++.
T Consensus 333 ~~-~~~~~~~~~~~~~~~a~~ 352 (420)
T PRK09528 333 LV-GVFKYITLNFDVRLSATI 352 (420)
T ss_pred HH-HHHHHHHHHcCccceeee
Confidence 22 223678888999988864
No 156
>PRK03545 putative arabinose transporter; Provisional
Probab=98.04 E-value=1.7e-05 Score=60.95 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=39.7
Q ss_pred HHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhh
Q 045175 12 TVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLAL 64 (177)
Q Consensus 12 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~ 64 (177)
....+.+.+. +..|.+.++ .........++..++.++.++++||+|||...+
T Consensus 223 ~~~~~~~~~l~~~~g~s~~~-~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~ 275 (390)
T PRK03545 223 TAYSYIEPFVQQVAGLSENF-ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI 275 (390)
T ss_pred HHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 3344555555 446888877 777777788889999999999999999886543
No 157
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.00 E-value=5.4e-05 Score=59.93 Aligned_cols=116 Identities=14% Similarity=0.060 Sum_probs=69.8
Q ss_pred hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEec----ccCCch-hhhHhhHHHHHHHHHHHHHHHhc
Q 045175 11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLID----HFGRKK-LALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~-~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
.....|.+.++ +..|++... ...+..+..+...+..++.|+++| |+|||+ .++.+.+..+++..++ +..+
T Consensus 23 ~~~~~~l~~yyt~v~Gls~~~-vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll---f~~p 98 (473)
T PRK10429 23 GIVYMYLMYYYTDVVGLSVGL-VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL---FSAH 98 (473)
T ss_pred HHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH---HcCC
Confidence 44455666666 556999887 777788888888999999999999 569854 4555666555554322 2111
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccc-ccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVY-REQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~ 133 (177)
..+ ......+..+...++..+++....|.. ++..|+. +.++|....
T Consensus 99 ~~~--~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~ 145 (473)
T PRK10429 99 LFE--GTAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLV 145 (473)
T ss_pred CCC--ccHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHH
Confidence 111 111122233333444444444444444 8889988 467787644
No 158
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.99 E-value=9e-06 Score=65.01 Aligned_cols=115 Identities=20% Similarity=0.203 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
.............+.....+...|++|||..+..+.+...++.+..+....... .....+...+...+.+.+
T Consensus 352 ~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 423 (521)
T KOG0255|consen 352 IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG--------GWLHWILPLLGKFFIGSA 423 (521)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch--------hHHHHHHHHHHHHHHHHH
Confidence 334444555577888888899999999999999999998888877766432111 012233333333444445
Q ss_pred cccccceeeccccccccccchh----------------------------------------eeeeeEEeecCCCCCHHH
Q 045175 112 MGPVPWTVNSEVYREQYRGICG----------------------------------------VVFVILFVPETQGLTFLE 151 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~----------------------------------------~~~~~~~~pet~~~~~~~ 151 (177)
+... +.+.+|++|+..|+.+. +++...++|||+++.+.+
T Consensus 424 ~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 424 FNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred HHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence 5555 48999999999999887 334458899999998865
Q ss_pred HHHH
Q 045175 152 VEHM 155 (177)
Q Consensus 152 ~~~~ 155 (177)
..++
T Consensus 503 t~~~ 506 (521)
T KOG0255|consen 503 TLLD 506 (521)
T ss_pred hHHH
Confidence 4443
No 159
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.97 E-value=2.3e-05 Score=60.41 Aligned_cols=62 Identities=6% Similarity=-0.106 Sum_probs=38.4
Q ss_pred hHHHHhhHHHH-HHcCCCCchHHHHHHHHH-HHHHHhhhhhheeEecccCCchhhh-HhhHHHHHHH
Q 045175 11 NTVMYYNPTIV-QMASFQSNQLALLLSLAV-AGTNAVGTIIGIYLIDHFGRKKLAL-SSLTGVIISL 74 (177)
Q Consensus 11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~-~~~~~i~~~~~g~l~d~~grr~~~~-~~~~~~~~~~ 74 (177)
.....+.|.+. +++|.+..+ ........ .....++.+.+++ +||+|||+.++ .+.+...+..
T Consensus 32 ~~~~p~~~~~l~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 32 ALQTPTLSIFLTDEVHARPAM-VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 44455566655 678988887 55554443 3445566666667 99999998754 4444433433
No 160
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=9.4e-06 Score=61.86 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
..++.....+.+++..++.|.+.||+|+|..++++.+.+....+++++.. .+.++...+..++.....
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~------------sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN------------SYPMLFVARSLQGVGSAF 175 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc------------hhHHHHHHHHHhhhhHHH
Confidence 67788888999999999999999999999999999999999988877742 444555555555544444
Q ss_pred cccccceeecccccccc-ccchh
Q 045175 112 MGPVPWTVNSEVYREQY-RGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~-R~~~~ 133 (177)
......+++++.||++. |+.++
T Consensus 176 ~~tsglamlAd~f~~d~er~~vm 198 (464)
T KOG3764|consen 176 ADTSGLAMLADVFPEDNERGSVM 198 (464)
T ss_pred HHhhhHHHHHHHcccchhhhHHH
Confidence 44444489999999875 68776
No 161
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.95 E-value=2.9e-05 Score=62.18 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
...+.....+..++.++++|.++||++||++++.+.++..+..+.+.........+ .+..++..++ .+.....
T Consensus 47 valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~------~~~Ll~~~fl-~g~~~a~ 119 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLS------PWLLLILTFL-LGIGSAF 119 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCC------HHHHHHHHHH-HHHHHHH
Confidence 45556666777788999999999999999999998888776665555433222111 2233333333 3333444
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..|..++++.|+.|++.-..++
T Consensus 120 ~~PA~~A~ip~lV~~~~L~~A~ 141 (524)
T PF05977_consen 120 FNPAWQAIIPELVPKEDLPAAN 141 (524)
T ss_pred HHHHHHHHHHHhccHhhHHHHH
Confidence 4566669999999998765554
No 162
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.94 E-value=2.1e-05 Score=60.45 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=50.5
Q ss_pred HHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 12 TVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 12 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
....+.|.+. ++.|++..+ .........++.+++.++.+++.||+|||+.+..+.++..+..+....
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 288 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGE-YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLAL 288 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666 567888776 666777778888999999999999999999988887776666554443
No 163
>PF13347 MFS_2: MFS/sugar transport protein
Probab=97.93 E-value=4.2e-05 Score=59.72 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=73.0
Q ss_pred hhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 6 QFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
+..+......+.+++.+. .|.+ +. ......+..+...++.+++++++||+|+|+.+..+.++.+++.+.......
T Consensus 237 ~~~~~~~~~~~~~y~~~~vl~~~-~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~-- 312 (428)
T PF13347_consen 237 QWLAFALMNTFLPYYFTYVLGNE-GL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP-- 312 (428)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCc-hh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--
Confidence 344444455555666644 3444 33 556666778888999999999999999999999999988888766554321
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccc
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQ 127 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 127 (177)
.......+...+.+.+.+. ....++++.+|+.+..
T Consensus 313 -------~~~~~~~i~~~l~gi~~~~-~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 313 -------GSPWLVLILFILAGIGYGA-FFVIPWAMLADVIDYD 347 (428)
T ss_pred -------hhHHHHHHHHHHhHhhhcc-cccccccccccchhhH
Confidence 1133444444454444443 3466679999998754
No 164
>PRK09669 putative symporter YagG; Provisional
Probab=97.92 E-value=8.8e-05 Score=58.17 Aligned_cols=114 Identities=15% Similarity=0.048 Sum_probs=68.3
Q ss_pred HHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchh-hhHhhHHHHHHHHHHHHHHHhcC
Q 045175 12 TVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKL-ALSSLTGVIISLVLLSWAFISGS 85 (177)
Q Consensus 12 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (177)
....|.+.++ +..|++... ...+..+..+...+..++.|+++|| +|||+. ++.+.+..+++.++. +..+.
T Consensus 27 ~~~~~l~~~~t~~~gls~~~-~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~---f~~p~ 102 (444)
T PRK09669 27 TVMLFLAYFYTDVFGLSAAI-MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT---FYTPD 102 (444)
T ss_pred HHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH---HhCCC
Confidence 3345555665 678999887 7888888888899999999999998 777555 445555555554322 22221
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccc-cccccch
Q 045175 86 SASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGIC 132 (177)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~ 132 (177)
.+ ......+..+...++...++....|.. ++.+|+.+ .++|++.
T Consensus 103 -~~-~~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l 147 (444)
T PRK09669 103 -FG-ATGKIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSL 147 (444)
T ss_pred -CC-cchHHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHH
Confidence 11 011122333333344444444333444 88889874 4667754
No 165
>PRK11043 putative transporter; Provisional
Probab=97.90 E-value=4.5e-05 Score=58.82 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=46.6
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV 75 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 75 (177)
+....+.|.+.++.|.+..+ .........++..+|.++.+++.||+|||+......+...++.+
T Consensus 220 ~~~~~~~p~~~~~~g~s~~~-~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 283 (401)
T PRK11043 220 FAWLTGSPFILEQMGYSPAD-IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI 283 (401)
T ss_pred HHHHHHhHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 44556678888878888776 55555666677788999999999999999876655555444443
No 166
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.90 E-value=2.6e-05 Score=59.91 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=46.2
Q ss_pred hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc
Q 045175 4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 60 (177)
+..+.+......+.|.+.++.|.+..+ ..+......+...++.++.|+++||+|||
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~-iG~~~~~~~l~~~l~~~~~g~l~dr~g~~ 69 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKGQGYTPET-IGLLLGAGLVARFLGSLLIAPRVKDPSQL 69 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCCHHH-HHHHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence 344455566667778888889999888 88888888899999999999999999995
No 167
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.90 E-value=3.2e-05 Score=61.58 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=43.7
Q ss_pred HHhhHHHH-HHcCCCCchHHHHHH-HHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 14 MYYNPTIV-QMASFQSNQLALLLS-LAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 14 ~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
..+.+.++ +..|++..+ ..... ....++.++|.+++|+++||+|||+.+..+.++..+..
T Consensus 242 ~~~~~~~l~~~~G~s~~~-~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~ 303 (491)
T PRK11010 242 MSLTTTFLIRGVGFDAGE-VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN 303 (491)
T ss_pred HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555 668998887 55554 45567889999999999999999888776555545444
No 168
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.89 E-value=6.3e-05 Score=58.63 Aligned_cols=72 Identities=10% Similarity=0.009 Sum_probs=53.2
Q ss_pred hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISLVL 76 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~ 76 (177)
+..+........+.+.++ ++.|++..+ ..++.....++..++.+++|.++||+|| |+.+..+.++..+....
T Consensus 12 ~~~~~~~~~~~~~l~~~l~~~~g~s~~~-iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 12 FLQWFIWGSWLVTLGSYMSKTLHFSGAE-IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 444555555555566666 668999888 8889999999999999999999999965 66766666655454433
No 169
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.87 E-value=4.8e-05 Score=60.72 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=75.2
Q ss_pred HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHH
Q 045175 15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYG 94 (177)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (177)
.+.+.+.++++.+.++ ..|+..+...+..+..++.+.+.||+|.|.+.+.+.++..++.++..+.. ...
T Consensus 67 v~~~~~~~~f~~s~~~-~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~----------~i~ 135 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQ-IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT----------SLW 135 (509)
T ss_pred hhHHHHHHHhCCCccH-HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh----------hHH
Confidence 4456667788888887 78888888888899999999999999999999999999999887776643 112
Q ss_pred HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 95 WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...+....+.+.+++..+.|.. .++. .+.++.|+.++
T Consensus 136 ~l~lt~gvi~G~G~~~~~~pai-viv~-~YF~kkR~lA~ 172 (509)
T KOG2504|consen 136 QLYLTFGVIGGLGLGLIYLPAV-VILG-TYFEKKRALAT 172 (509)
T ss_pred HHHHHHHHHhhccchhhhcchh-hhhh-hHhHHHHHHHH
Confidence 2233333444444455555555 4555 45567777666
No 170
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.84 E-value=7.2e-05 Score=57.84 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
..+.|.++ +..|.+..+ .........++..++.++.++++||+|||+.+..+.+...++.++...
T Consensus 235 ~~~~p~~~~~~~g~~~~~-~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~ 300 (406)
T PRK15402 235 IALSPVILISGEQLSSYE-YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL 300 (406)
T ss_pred HHHhHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34467776 557887766 555555566677899999999999999999888777766655544443
No 171
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.82 E-value=3.4e-05 Score=57.76 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=50.6
Q ss_pred hhHHHHhhHHHHHH---cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 10 INTVMYYNPTIVQM---ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 10 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
-..+..|.+.+.++ .|++.++ ..........+.++|.++.+++.||+|+|+.+.++.++..++.
T Consensus 156 e~~~~~w~~~yl~~~~~~g~s~~~-a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~ 222 (310)
T TIGR01272 156 EVSAGSFLVNFLSDPHALGLPEDQ-AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS 222 (310)
T ss_pred HHHHHHHHHHHHHhcccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 34566778888853 4788777 7777888888999999999999999999988877766666554
No 172
>PRK10133 L-fucose transporter; Provisional
Probab=97.82 E-value=3.1e-05 Score=60.73 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=48.5
Q ss_pred hHHHHhhHHHH-H-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 11 NTVMYYNPTIV-Q-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 11 ~~~~~~~~~~~-~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
.....|.+.+. + ..|++..+ .........++..+|.++++++.||+|||+++..+.++..+..
T Consensus 275 ~~~~~~~~~~l~~~~~g~s~~~-ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~ 339 (438)
T PRK10133 275 TACWSYLIRYAVEEIPGMTAGF-AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_pred HHHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 33445666664 4 46888887 7778888888999999999999999999999877766655444
No 173
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.82 E-value=0.00014 Score=55.87 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=57.5
Q ss_pred hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
+..+.|.+....|.-.++ +..|++.+. ..+....++++..+|..++|+++|| +.|+.+.....+..+..+.+..
T Consensus 221 ~l~~~g~F~~ftYi~P~L~~v~g~s~~~-vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~ 295 (394)
T COG2814 221 FLFMTGHFALYTYIRPFLESVAGFSVSA-VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF 295 (394)
T ss_pred HHHHcchhhhHHhHHHHHHHccCCCHhH-HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH
Confidence 445666677667765555 667898888 8888888999999999999999999 8888888777777666655443
No 174
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=97.78 E-value=6.7e-05 Score=58.76 Aligned_cols=109 Identities=20% Similarity=0.108 Sum_probs=68.8
Q ss_pred chhHHHHhhHHHH-HHcC----CCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 9 GINTVMYYNPTIV-QMAS----FQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 9 ~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
++|++-.-+..|+ .+.+ +++++ +......+...--...+++||++|| +|+|+..+.+.++..++-++++...
T Consensus 36 syYGmraiL~~Yl~~~~~~gLg~~~~~-A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~- 113 (498)
T COG3104 36 SYYGMRAILILYLYYQLGDGLGFDETH-ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS- 113 (498)
T ss_pred hhhhhHHHHHHHHHHhccccCCcChHh-hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc-
Confidence 4455444444444 5555 88888 6666655555556889999999999 7999999999999998887766531
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccc
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQY 128 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 128 (177)
.. ......+.+.+...+.+ ..-+..-.+..|++|++.
T Consensus 114 --~~------~~~gl~i~L~~I~iG~G-l~K~NiS~llg~ly~~~D 150 (498)
T COG3104 114 --VS------GPGGLYIGLALIIVGTG-LFKPNISSLLGELYPKDD 150 (498)
T ss_pred --cc------cccHHHHHHHHHHhccc-cccccHHHHHHHhcCCCC
Confidence 00 01122333333333333 333433389999998753
No 175
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.77 E-value=8.5e-05 Score=56.06 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=47.2
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175 19 TIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL 76 (177)
Q Consensus 19 ~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 76 (177)
.+++++|+++.+ ...+.....+...+...+.|.++||+|||+..+..+++.+++++.
T Consensus 59 ~LY~~yg~~~~q-Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~ 115 (354)
T PF05631_consen 59 ALYESYGFSEHQ-IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT 115 (354)
T ss_pred HHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 334678999888 666777778888999999999999999999999888888877653
No 176
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.77 E-value=9.4e-05 Score=57.00 Aligned_cols=87 Identities=15% Similarity=-0.057 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccccc
Q 045175 35 LSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGP 114 (177)
Q Consensus 35 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (177)
...+..++..++.+..|+++||+|||+.+..+.....++.+...... ......+...+.+.+.+.. .+
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~-~~ 330 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-----------TPLQLGILRFLLGAADGAL-LP 330 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHhhhHhh-HH
Confidence 33445566778888999999999999998877776655544332210 0222222233333333322 22
Q ss_pred ccceeeccccccccccchh
Q 045175 115 VPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 115 ~~~~~~~e~~p~~~R~~~~ 133 (177)
...++..+..|++.|++..
T Consensus 331 ~~~~~~~~~~~~~~~g~~~ 349 (408)
T PRK09874 331 AVQTLLVYNSSNQIAGRIF 349 (408)
T ss_pred HHHHHHHHhCCcccceeee
Confidence 2325667778888877764
No 177
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.77 E-value=6.5e-05 Score=57.74 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=47.9
Q ss_pred hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhh
Q 045175 4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA 63 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~ 63 (177)
+..+.+......+.|.+.++.|++..+ .........+...++.+++++++||+|||...
T Consensus 14 ~~~~~~~~~~~p~l~~~l~~~g~s~~~-ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~ 72 (382)
T TIGR00902 14 FGYFCAYGIFLPFFPAWLKGIGLGEEM-IGLLIGAALIARFAGGLFFAPLIKDANHIIIA 72 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 444455566677888999999999888 88888888888999999999999999986543
No 178
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.75 E-value=7.9e-05 Score=57.80 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=56.3
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISL 74 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~ 74 (177)
.+.++........|.|.++++.|++..+ ...+.++..+..+++.+++|+++||.++ |+.+.+..++.++..
T Consensus 11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~q-IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 11 YFLYFFAYGAFLPYLPLYLESRGFSGTQ-IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL 82 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 4566777778888899999999999888 8888998999999999999999999864 555555444444433
No 179
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.75 E-value=6.5e-05 Score=57.70 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=49.4
Q ss_pred HHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHH
Q 045175 12 TVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLL 77 (177)
Q Consensus 12 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 77 (177)
....+.|.+.++.|.+..+ .........+...++.++.+++.||+|+|+.+..+.+..++..+..
T Consensus 223 ~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~ 287 (382)
T PRK11128 223 AYYGFSAIYWQAAGYSAST-IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM 287 (382)
T ss_pred hHHHHHHHHHHHCCCCHhH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888776 5556666677788888999999999999999888877777665444
No 180
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.75 E-value=0.00012 Score=57.69 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=45.4
Q ss_pred hhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCch
Q 045175 4 FQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKK 61 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~ 61 (177)
+....+.+....|.|.++ +..|.+..+ ......+..++..++.+++|+++||+++|+
T Consensus 271 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~ 328 (465)
T TIGR00894 271 FGHFWLYTILPTYLPTFISWVLRVSGKE-NGLLSSLPYLFAWLCSIFAGYLADFLKSSK 328 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445556677778999998 557888877 777888888889999999999999986553
No 181
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.71 E-value=8.4e-05 Score=64.82 Aligned_cols=121 Identities=16% Similarity=-0.001 Sum_probs=72.7
Q ss_pred hHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHh-cCCCC
Q 045175 11 NTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFIS-GSSAS 88 (177)
Q Consensus 11 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 88 (177)
.....+.|.+.+ .+|.+... ..++.....++..+|.++.++++|+.++++.+..+.++.+++.+.+...... .....
T Consensus 242 ~~~~~~~p~~~~~~~g~~~~~-~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (1140)
T PRK06814 242 AVVLSQLPLLAKETLGGDENV-ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPA 320 (1140)
T ss_pred HHHHHHhHHHHHHHcCCchHH-HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccc
Confidence 455567788884 46888776 7777888889999999999999998887776655555555444333221000 00000
Q ss_pred -c-------chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 89 -S-------SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 89 -~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
. .....+...+...+++.+.+....+.. ++..+..|++.||+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~G~v~ 372 (1140)
T PRK06814 321 QLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF-AALQAWANPAHRARVI 372 (1140)
T ss_pred cccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH-HHHHhhCCcccceeee
Confidence 0 000122233333344444333333444 8999999999999876
No 182
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.70 E-value=3.2e-05 Score=60.24 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHH
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLL 77 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 77 (177)
......+..++.+++.+++++++||+|||+.+..+.++.+++.+..
T Consensus 259 ~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 259 FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 4455566678889999999999999999999888877766665443
No 183
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.66 E-value=0.00011 Score=56.44 Aligned_cols=61 Identities=13% Similarity=-0.042 Sum_probs=43.7
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHH-HHHHhhhhhheeEecccCCchhhhHhhHHHHH
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVA-GTNAVGTIIGIYLIDHFGRKKLALSSLTGVII 72 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~ 72 (177)
.....+.+.+.++.|++.++ ......... ....++.+++|++.||+|+|+.+..+..+.++
T Consensus 225 ~~~~~~~~~~l~~~G~s~~~-ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~ 286 (390)
T TIGR02718 225 VSGFGLSKLYLVDAGWPLEW-IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS 286 (390)
T ss_pred HHHHHHhhHHHHhcCCCHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444566667778998887 555555444 45677889999999999999998876665533
No 184
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.60 E-value=4.4e-05 Score=60.93 Aligned_cols=70 Identities=24% Similarity=0.290 Sum_probs=52.8
Q ss_pred hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchh--hhHhhHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKL--ALSSLTGVIISL 74 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~--~~~~~~~~~~~~ 74 (177)
.....+.+.-..+.|.+.++.|.++.+ +.....+.++...++.++.|+++|+...|+. ...+.+..+++.
T Consensus 308 ~~~~~g~~~p~~~l~~~~~~~g~~~~~-aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~ 379 (509)
T KOG2504|consen 308 LFAYLGFNVPFVYLPSYAKSLGLSSND-AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR 379 (509)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCChhh-hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 344556677777888888889999998 7778888899999999999999999884443 344444444444
No 185
>PRK09848 glucuronide transporter; Provisional
Probab=97.59 E-value=0.00087 Score=52.63 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=43.5
Q ss_pred HHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc----CCchhh-hHhhHHHHHH
Q 045175 13 VMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF----GRKKLA-LSSLTGVIIS 73 (177)
Q Consensus 13 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~----grr~~~-~~~~~~~~~~ 73 (177)
...|.+.++ +..|++..+ ...+..+..+...+..++.|+++||. |||+.+ +++.+...+.
T Consensus 27 ~~~~l~~y~~~~~gl~~~~-~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 27 GALFLLSYYTDVAGVGAAA-AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred HHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 334454555 556998887 88888888999999999999999996 777755 4444444433
No 186
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.59 E-value=0.00036 Score=53.71 Aligned_cols=64 Identities=13% Similarity=-0.013 Sum_probs=47.9
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHH--HHHHHHHHHhhhhhh-eeEecccCCchhhhHhh
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLL--SLAVAGTNAVGTIIG-IYLIDHFGRKKLALSSL 67 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~i~~~~~-g~l~d~~grr~~~~~~~ 67 (177)
++.|-........+.|.++++.|.+.++ .... ..+..+...+.+++. ++..||+|||+.++...
T Consensus 10 y~~~g~~~~~~~p~lp~~l~~~g~~~~~-iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~ 76 (390)
T TIGR02718 10 YLSQGIPIGLAMDALPTLLREDGAPLTA-LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM 76 (390)
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence 3455556677778899999999999887 5554 345577777888888 56899999999875544
No 187
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.00037 Score=55.44 Aligned_cols=96 Identities=18% Similarity=-0.066 Sum_probs=63.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 045175 25 SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALY 104 (177)
Q Consensus 25 g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (177)
+...++ -....+++.++.+++.+.++.+.||++-++.+....+..++..++..... +....++...+.
T Consensus 77 ~~~~~~-l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~-----------s~~~~ialr~ll 144 (495)
T KOG2533|consen 77 KLVGNQ-LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH-----------SFPGLIALRFLL 144 (495)
T ss_pred chhhhh-hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHH
Confidence 344445 66788889999999999999999999966665555444444443222211 122334444555
Q ss_pred hhhhccccccccceeeccccccccccchh
Q 045175 105 ITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+..-+.++.+.. .+++..|.+++|+.-+
T Consensus 145 Gl~es~~wP~~~-~~lg~wy~~~e~g~r~ 172 (495)
T KOG2533|consen 145 GLFESGGWPGVV-AILGNWYGKSERGLRM 172 (495)
T ss_pred HHHhcccchHHH-HHHHhhcChhhhhhhH
Confidence 555555555555 8999999999999776
No 188
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.55 E-value=0.0003 Score=56.47 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=74.2
Q ss_pred HhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhH
Q 045175 15 YYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 15 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (177)
..+|.+. +.+|.+... -+.+....+++.++|+++.+++.+|+++++.+..+.++.+++.+.++... .
T Consensus 239 aLlPl~a~~~l~~~a~~-yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-----------~ 306 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASG-YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-----------S 306 (524)
T ss_pred HhhhHHHHHHhCCcHHH-HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-----------H
Confidence 3467777 456877776 67777888999999999999999999998888888877777766555421 1
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+...+...+.+........... +...+..|.+.||+..
T Consensus 307 ~~~~~~~l~l~G~~~~~~~~~~~-t~~Q~~~P~~~~GRv~ 345 (524)
T PF05977_consen 307 FWLALIALFLAGAAWIIANSSLN-TLVQLSVPDWVRGRVF 345 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHhHHH
Confidence 33333333444443333333333 7888999999999886
No 189
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.54 E-value=5.9e-05 Score=59.32 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=67.3
Q ss_pred cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175 24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA 102 (177)
Q Consensus 24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (177)
.+.+.+. .+++.....++.+++.+..|+-..|.+. |+.++.++++++++.++.....+.... ..+++++.+.
T Consensus 66 ~~A~~~f-fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~------~~y~mL~~R~ 138 (488)
T KOG2325|consen 66 PTATATF-FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG------VKYLMLVARI 138 (488)
T ss_pred CCCCcch-hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc------hHHHHHHHHH
Confidence 4555555 7788888899999999999999999986 778899999999998887554443332 1555565555
Q ss_pred HHhhhhccccccccceeeccccccccccch
Q 045175 103 LYITFFAPGMGPVPWTVNSEVYREQYRGIC 132 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~ 132 (177)
+.+++.+ .....- .|+++..-.+.|.++
T Consensus 139 l~Gvg~~-n~a~lR-~Y~a~~s~~~dR~rA 166 (488)
T KOG2325|consen 139 LTGVGVG-NFAVLR-AYIADASTVEDRPRA 166 (488)
T ss_pred HcCcCcc-cHHHHH-HHHHhccCccchHHH
Confidence 5444433 233344 677775444444444
No 190
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.52 E-value=1.3e-05 Score=63.58 Aligned_cols=66 Identities=27% Similarity=0.262 Sum_probs=51.1
Q ss_pred hhhhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchhhhHhhHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKLALSSLTGV 70 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~~~~~~~ 70 (177)
+++....++..+|.|.+.++ .|+++.+ +..+++...++++++.+++|+++|| ..+|........+.
T Consensus 283 ~~~~lv~~~~~~~lpl~l~~~~~~s~~~-a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 283 FFLKLVNYGFSYWLPLYLKSNGGYSELQ-ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred HHHhhccccHHHHHHHHHHcCCCcChHH-hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44445568889999999977 4578877 8889999999999999999999999 55555554444333
No 191
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.52 E-value=0.00019 Score=55.28 Aligned_cols=60 Identities=12% Similarity=-0.020 Sum_probs=41.2
Q ss_pred hhHHHHHHc----CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175 16 YNPTIVQMA----SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL 76 (177)
Q Consensus 16 ~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 76 (177)
+.|.+.++. +.+... ......+..+...++.+..+++.||+|||+.+..+.++.++...+
T Consensus 237 ~~~~y~~~~~~~~~~~~~~-~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRV-FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG 300 (396)
T ss_pred HHHHHHHHhccccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 455555443 223333 455566666777888899999999999999988877766665543
No 192
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.50 E-value=0.00034 Score=54.08 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHHHHcCCCCchHHHHHHHH-HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHH
Q 045175 18 PTIVQMASFQSNQLALLLSLA-VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLV 75 (177)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 75 (177)
+.+.++.|.+.++ ..+.... ..++..++.++++++.||+|||+.+..+..+..+..+
T Consensus 234 ~~l~~~~G~~~~~-~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l 291 (402)
T PRK11902 234 TFLIRGAGFSAGE-VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL 291 (402)
T ss_pred HHHHHhcCCCHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344667888776 5444433 3445789999999999999999987766665555443
No 193
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.49 E-value=0.00072 Score=52.27 Aligned_cols=53 Identities=17% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhh
Q 045175 14 MYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSL 67 (177)
Q Consensus 14 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~ 67 (177)
.+..|.+. +.+|.+..+ .........++..++.++.+++.||.++|+.+..+.
T Consensus 225 ~~~~~~~~~~~lg~s~~~-~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~ 278 (393)
T PRK11195 225 RFLVLAWAPVALGITLNQ-PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI 278 (393)
T ss_pred HHHHHHHHHHHcCCChhH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 33445555 446888877 777888888889999999999999999888776664
No 194
>PRK11462 putative transporter; Provisional
Probab=97.47 E-value=0.00098 Score=52.71 Aligned_cols=116 Identities=16% Similarity=0.059 Sum_probs=71.5
Q ss_pred hHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchhhh-HhhHHHHHHHHHHHHHHHhc
Q 045175 11 NTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKLAL-SSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 11 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (177)
.....|..+++ +..|++... +..+..+..+.-.+.-++.|.++|| +|||+.++ ++.+..+++.++ .+..+
T Consensus 26 ~~~~~~l~~fyt~~~Gl~~~~-~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l---lf~~p 101 (460)
T PRK11462 26 DNVMLYMMFFYTDIFGIPAGF-VGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL---AYSTP 101 (460)
T ss_pred HHHHHHHHHHHHHhhCCCHHH-HHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH---HHhCC
Confidence 34445566666 667998876 7777777788888999999999996 68766654 555555555432 22222
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccc-cccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYR-EQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~ 133 (177)
+.+ ......+..+...++...++..-.|.. ++.+|+.+ .++|++..
T Consensus 102 -~~s-~~~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~ 148 (460)
T PRK11462 102 -DLS-MNGKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQ 148 (460)
T ss_pred -CCC-cchHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHH
Confidence 111 111122334444455555555444444 89999988 56787665
No 195
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.44 E-value=0.00072 Score=40.47 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=58.2
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
+..+...|.+.++.+++.++ +.++.+...++.++|++...++.++.++|+.+..+.+...+..+.++.
T Consensus 9 FayTplLP~M~~~~~ls~~~-ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQ-AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788888999999998 999999999999999999999999988888888888887777766655
No 196
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.38 E-value=0.00064 Score=52.57 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=40.1
Q ss_pred chhHHHHhh-HHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHH
Q 045175 9 GINTVMYYN-PTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTG 69 (177)
Q Consensus 9 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~ 69 (177)
+.+....+. |.+.++.|++.+. .........++..++.++.+++.||.+|+ .++.+..+
T Consensus 231 ~~~~~~~~~~p~~~~~~g~s~~~-~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~ 290 (394)
T PRK10213 231 GQFAFFTYIRPVYMNLAGFGVDG-LTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLV 290 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHH
Confidence 333444444 6666778988876 66667777788899999999999996544 43333333
No 197
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.37 E-value=0.00034 Score=54.50 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=62.3
Q ss_pred HHHHhhHHHHHHc--CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 12 TVMYYNPTIVQMA--SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 12 ~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
....|.+.+.++. +.+... +.........+..+|.++++++.||+++|+++.+..++..++.++.....
T Consensus 250 ~~~s~l~~y~~~~~~~~~~~~-a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~-------- 320 (410)
T TIGR00885 250 MCWTFIIQYAVRLIPGMTAGF-AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG-------- 320 (410)
T ss_pred HHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence 3445566666544 333333 33344444567789999999999999999988777777666655444311
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG 130 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 130 (177)
...........+.+.+..+ |..++...+..+++.+.
T Consensus 321 ----~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~ 356 (410)
T TIGR00885 321 ----GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKY 356 (410)
T ss_pred ----ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhh
Confidence 1112222333333344344 44447888888877654
No 198
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.00074 Score=52.70 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=62.8
Q ss_pred hhHHHHhhHHHHHH----cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC----CchhhhHhhHHHHHHHHHHHH-H
Q 045175 10 INTVMYYNPTIVQM----ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG----RKKLALSSLTGVIISLVLLSW-A 80 (177)
Q Consensus 10 ~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g----rr~~~~~~~~~~~~~~~~~~~-~ 80 (177)
.....+|.|.+... .|.+.+. ..+...+..+++.+|.+++|.++||+. |........+........... .
T Consensus 260 ~Gs~sww~p~~~~~~~~~~~~~~~~-~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L 338 (493)
T KOG1330|consen 260 IGSLSWWAPAFIYYSYELIGFDHNA-TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFL 338 (493)
T ss_pred ccccchhhhhHHHHHHHHhCCcccc-chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHH
Confidence 34556666766532 2555565 777888888999999999999999943 211122222222211111111 1
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....... ....+..+++..+........+.+.. -+..|+.|++.|.++.
T Consensus 339 ~~~~~~~---~~s~~~~~il~~~g~~~~~~~~a~n~-~i~l~vV~p~~Rt~a~ 387 (493)
T KOG1330|consen 339 FLFPAFT---SSSMIFGLILFLVGETISWFNWATNN-PIFLEVVPPSRRTTAY 387 (493)
T ss_pred HHHHhhh---hHHHHHHHHHHHHHHHHHhccccccc-ceeeEecCcccccHHH
Confidence 1111111 11122222222222222233444445 7889999999999987
No 199
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.30 E-value=0.00029 Score=54.71 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=76.2
Q ss_pred hHHHHhhHHHHHHcC-CCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 11 NTVMYYNPTIVQMAS-FQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
.....|.+.+.++.| .+.+. ......+..+..++.-...+++..|+|.|++++.+.+..++=..+++... + +
T Consensus 224 ~~~~~f~~~yl~~~gg~~~~~-~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~---~-~-- 296 (400)
T PF03825_consen 224 AAYYTFFSIYLQELGGYSGST-IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS---D-P-- 296 (400)
T ss_pred HHHHHHHHHHHHHcccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc---C-C--
Confidence 345566677778887 55554 55566677788899999999999999999999999888887776655431 0 0
Q ss_pred chhHHHHH-HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 90 SEVYGWIA-VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....... +....+-+..++....... .|+.+..|++.|+++.
T Consensus 297 -~~~~~~~~~l~q~lhG~tf~~~~~a~~-~yi~~~~p~~~~at~Q 339 (400)
T PF03825_consen 297 -WPFIVALQLLGQLLHGLTFGLFHAASV-RYIDRIAPPELRATAQ 339 (400)
T ss_pred -cHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHhCCccchHHHH
Confidence 0001111 1111234555555555555 8999999999998876
No 200
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.26 E-value=0.00033 Score=55.32 Aligned_cols=79 Identities=20% Similarity=0.189 Sum_probs=52.6
Q ss_pred HHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccccccccee
Q 045175 40 AGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTV 119 (177)
Q Consensus 40 ~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (177)
++..++.++..|.++||+|||..+....+...+..+...+. .++..+ ..-..+++... .....++
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~~~~~~-~~~l~g~~~~~-~s~~~a~ 136 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------GYWFFL-LLGLSGGFSAI-FSVGFAY 136 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------HHHHhh-hcccccchhhh-hhhhhhh
Confidence 56678889999999999999999988887777666554442 122222 11112222222 2334489
Q ss_pred eccccccccccchh
Q 045175 120 NSEVYREQYRGICG 133 (177)
Q Consensus 120 ~~e~~p~~~R~~~~ 133 (177)
.++...++.|....
T Consensus 137 vadis~~~~R~~~~ 150 (463)
T KOG2816|consen 137 VADISSEEERSSSI 150 (463)
T ss_pred eeeccchhHHHHHH
Confidence 99999999998776
No 201
>PRK11462 putative transporter; Provisional
Probab=97.25 E-value=0.00032 Score=55.42 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHH
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGV 70 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~ 70 (177)
........+..+++.+++++++||+|+|+.+..+..+.
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~ 303 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL 303 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 34455566777889999999999999998876544433
No 202
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.0048 Score=48.69 Aligned_cols=118 Identities=17% Similarity=0.106 Sum_probs=74.4
Q ss_pred chhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchh-hhHhhHHHHHHHHHHHHHHH
Q 045175 9 GINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKL-ALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 9 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~ 82 (177)
.......|+.+++ ...|++... +..+-.+.-+.-.+.-|+.|.++|| +|||+. ++++.+..++... ..+.
T Consensus 27 ~~~~~~~yLl~fYTdv~Gis~~~-aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~---l~F~ 102 (467)
T COG2211 27 AFGIVVLYLLFFYTDVFGLSAAL-AGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV---LLFI 102 (467)
T ss_pred HHHHHHHHHHHHHhcccCCcHHH-HHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH---HHHc
Confidence 3455667777777 557888776 6667777777788999999999996 677555 4555555555543 2222
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccc-ccccchh
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGICG 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~~ 133 (177)
.++.+ ......+..+...++...++..-.|.. ++.+|+.+. ++|.+..
T Consensus 103 ~p~~~--~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~ 151 (467)
T COG2211 103 TPDFS--MTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLT 151 (467)
T ss_pred CCCcc--cCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHH
Confidence 22211 111234445555555666665555555 899999774 6787765
No 203
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.15 E-value=0.0015 Score=50.63 Aligned_cols=107 Identities=11% Similarity=-0.031 Sum_probs=55.6
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEe-cccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLI-DHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~-d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
..+.|.+.++.+.++.+ ..+......+....+....++.. ||++.|+.+..+.++.++..+......
T Consensus 228 ~~~~p~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------- 295 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSA-VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------- 295 (400)
T ss_pred HHhhhhhHHhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-----------
Confidence 34667877665545544 44454554544444444444444 456656665666655555544333211
Q ss_pred HHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
......+....++.+.... .+...++..|..|++.|++..
T Consensus 296 ~~~~~~~~~~l~~~g~~~~-~p~~~~~~~~~~p~~~~g~~~ 335 (400)
T PRK11646 296 NLQQLFTLICLFYIGSIIA-EPARETLSASLADARARGSYM 335 (400)
T ss_pred hHHHHHHHHHHHHHHHHHH-HccHHHHHHhcCCcccchhhh
Confidence 0112222222333322222 233337888999999999876
No 204
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.13 E-value=0.0012 Score=44.41 Aligned_cols=117 Identities=13% Similarity=0.051 Sum_probs=74.0
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCC------CCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASF------QSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVL 76 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 76 (177)
++..++++.......-++.++.+- ++.. ...-..+......++.++.+.+.+++|.|+.++++.+...+....
T Consensus 5 f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~-G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~ 83 (156)
T PF05978_consen 5 FMFLFTAFQTQSFIQESVIHSVHERNPSSISAGL-GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS 83 (156)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhcCcccccccc-cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445556666665555555544432 3333 555666667777888899999999999999999888876655433
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 77 LSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... ...+..+....+.+.+.+..|.+.. .++.+..+++.|++..
T Consensus 84 ~~~------------~~~~~l~~~s~l~G~~~a~lW~aqg-~ylt~~s~~~~~~~~~ 127 (156)
T PF05978_consen 84 FFY------------PNSYTLYPASALLGFGAALLWTAQG-TYLTSYSTEETIGRNT 127 (156)
T ss_pred HHh------------hhHHHHHHHHHHHhhhhHHhhHhhh-HHHHHcCCHHHHhhHH
Confidence 221 1133444444555666666666666 6777877777666544
No 205
>PRK09848 glucuronide transporter; Provisional
Probab=97.10 E-value=0.00031 Score=55.12 Aligned_cols=106 Identities=13% Similarity=0.027 Sum_probs=58.3
Q ss_pred hHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc
Q 045175 11 NTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS 89 (177)
Q Consensus 11 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (177)
.....+.|++.++ +|.++.. .........++.+++.++.+++.||+|+|+.+..+.++.+++.+.... ....
T Consensus 245 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~----~~~~-- 317 (448)
T PRK09848 245 FAVSASSLFYVRYVLNDTGLF-TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW----VSVW-- 317 (448)
T ss_pred HHHhhhheeeEeeecCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH----cCch--
Confidence 3334445555533 4544433 333333334566788999999999999999998888776666544332 1111
Q ss_pred chhHHHHHHHHHHHHhhhhccccccccceeeccccccc
Q 045175 90 SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQ 127 (177)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 127 (177)
..+...+...+.+.+.+.. .+..+++.+|..|.+
T Consensus 318 ---~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~ 351 (448)
T PRK09848 318 ---SLPVALVALAIASIGQGVT-MTVMWALEADTVEYG 351 (448)
T ss_pred ---hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhh
Confidence 1222222233333333333 334457778877653
No 206
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.00067 Score=53.34 Aligned_cols=92 Identities=25% Similarity=0.290 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
+...........+++.+++..+.+|+|+|+.+.++.++.++..++..+.. .+ .....++..++.+.+ ...
T Consensus 274 ~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~----~~-----~~~l~~~~~~i~~~g-~~~ 343 (467)
T COG2211 274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP----AG-----SVVLIVVALIIAGVG-TGI 343 (467)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc----Cc-----chHHHHHHHHHHHHH-hhc
Confidence 44455555565666799999999999999999999888887775544432 11 122233333333333 334
Q ss_pred cccccceeeccccc-----cccccchh
Q 045175 112 MGPVPWTVNSEVYR-----EQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p-----~~~R~~~~ 133 (177)
..+.+|++.+|... +..|..+.
T Consensus 344 ~~~l~wam~~d~vDyge~~TG~R~eGi 370 (467)
T COG2211 344 ANPLPWAMVADTVDYGEWKTGVRREGI 370 (467)
T ss_pred cccccHHHhcchhhHHHHHhCCCchhh
Confidence 56788999998754 33455554
No 207
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.08 E-value=0.00039 Score=55.19 Aligned_cols=64 Identities=6% Similarity=0.004 Sum_probs=51.9
Q ss_pred hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhH
Q 045175 4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLT 68 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~ 68 (177)
+...++...+...++.+.++.|++..+ ...++...-++.+++.+++|+++||+.+|+.++.+..
T Consensus 21 ~~~~~~~g~l~pll~vy~kQLGl~p~~-~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl 84 (618)
T KOG3762|consen 21 LFFGARFGSLFPLLAVYFKQLGLNPAV-VGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSL 84 (618)
T ss_pred eeeeecccccchHHHHHHHHcCCCHHH-hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHH
Confidence 344556667778899999999999998 7778888888899999999999999987666555444
No 208
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.0023 Score=49.23 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=71.3
Q ss_pred hhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175 16 YNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW 95 (177)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (177)
..|.+.+.++++..+ +..+......+..+.++..+++.+|+|+|+-++.+..++++++.++..+.. .....
T Consensus 35 Lip~l~~~f~ls~~~-a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~--------~~~y~ 105 (422)
T COG0738 35 LIPHLKEVFDLTYFE-ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS--------SKSYG 105 (422)
T ss_pred hHHHHHHHhCccHHH-HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh--------hhhHH
Confidence 457777778999888 888999999999999999999999999999999999999999876653321 11122
Q ss_pred HHHHHHHHHhhhhccccccccceeeccccccc
Q 045175 96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQ 127 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 127 (177)
..++.....+.+.+.- ......++..+.|++
T Consensus 106 ~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~ 136 (422)
T COG0738 106 FFLVALFILASGIGLL-ETAANPYVTLLGKPE 136 (422)
T ss_pred HHHHHHHHHHhhhHHH-HhccchHHHHhCCch
Confidence 2233233333333322 223336888888774
No 209
>PRK09669 putative symporter YagG; Provisional
Probab=96.96 E-value=0.00071 Score=53.10 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
.........+..+++.+++++++||+|+|+.+..+.++.++..+.... ...+ ......+...+.+.+.+ .
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~i~g~~~~-~ 335 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF---IPPS------NVWLIFALNILFNFIQN-L 335 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---hCcc------hHHHHHHHHHHHHHHHH-H
Confidence 334444555667788899999999999999988776655443322111 1111 12222333333333333 3
Q ss_pred cccccceeeccccc
Q 045175 112 MGPVPWTVNSEVYR 125 (177)
Q Consensus 112 ~~~~~~~~~~e~~p 125 (177)
..+..+++.+|..+
T Consensus 336 ~~~~~~am~ad~~d 349 (444)
T PRK09669 336 TTPLQWSMFSDVVD 349 (444)
T ss_pred HHHHHHHHHHhhhh
Confidence 34566789988876
No 210
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=96.90 E-value=0.001 Score=54.00 Aligned_cols=92 Identities=12% Similarity=-0.055 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhh-hHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLA-LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAP 110 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (177)
..+.......+..+|.++.+.+..++||-|.. +.+.+++.++. +.+.....++ ....+....+.+.+.+.
T Consensus 351 ~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~---Gama~~~~~n------~~~~i~~~~l~g~giG~ 421 (599)
T PF06609_consen 351 IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFC---GAMAAVRPDN------KNAAIAFLVLAGFGIGG 421 (599)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHH---HHHHHccCCC------cchHHHHHHHHHHhHHH
Confidence 45667777788888999999999988875544 45555444333 2222222222 11122223333333333
Q ss_pred ccccccceeeccccccccccchh
Q 045175 111 GMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 111 ~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...+.. +...-..|++.-+++.
T Consensus 422 ~~~~~~-~~~ql~~p~~~ig~a~ 443 (599)
T PF06609_consen 422 ILVPAI-VIAQLIVPDEDIGTAT 443 (599)
T ss_pred HHHHHH-HeeEeeeCchHHHHHH
Confidence 333333 5555567777666554
No 211
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.89 E-value=0.0063 Score=47.56 Aligned_cols=102 Identities=13% Similarity=0.007 Sum_probs=63.4
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhh
Q 045175 27 QSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYIT 106 (177)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (177)
+.+. +.|.+.++.++..+..+.+.|+.||+|-|...+.+.++.+++..+=.....-.-++ ..+ ....+.+..+.+.
T Consensus 77 s~~~-~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~--~f~-~~l~~~Gq~iaa~ 152 (480)
T KOG2563|consen 77 SSSA-ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPP--LFR-RPLTHTGQSIAAA 152 (480)
T ss_pred chHH-HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccc--cch-hhhhHHhHHHHHH
Confidence 4444 88999999999999999999999999999999999998888865433321110000 011 1123333333222
Q ss_pred hhccccccccceeeccccccccccchh
Q 045175 107 FFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 107 ~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..... -..+--+..-+||+++|+++.
T Consensus 153 Aq~Fi-m~lPskiA~~WF~~~qra~A~ 178 (480)
T KOG2563|consen 153 AQPFI-LGLPSKIAAVWFPPDQRAIAT 178 (480)
T ss_pred hhhHh-hccccHHHHhhCCcchhhhhh
Confidence 22111 122213444569999999987
No 212
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.0021 Score=47.61 Aligned_cols=103 Identities=15% Similarity=0.095 Sum_probs=62.0
Q ss_pred hhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHH-HHHHHHHHHhcCCCCcchhH
Q 045175 16 YNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIIS-LVLLSWAFISGSSASSSEVY 93 (177)
Q Consensus 16 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (177)
..|.++ +.+|+++.. +..+.+.......+..++.|.++||+||+..++.+..+..+. =..+.+.+ ..
T Consensus 286 lg~~fF~~rfGlS~~~-a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~----------ls 354 (459)
T KOG4686|consen 286 LGPMFFQKRFGLSAVS-AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF----------LS 354 (459)
T ss_pred hhHHHHHHhhCCChhh-ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----------cc
Confidence 356666 668998877 666666677778899999999999999988766544333222 21111111 11
Q ss_pred HHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 94 GWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
++..+..+ +...+. .....|..++.+.|++.-|++.
T Consensus 355 Py~~m~~l---GLsysl-lAcslWP~va~~vpE~qLGTay 390 (459)
T KOG4686|consen 355 PYTSMTFL---GLSYSL-LACSLWPCVASLVPEEQLGTAY 390 (459)
T ss_pred HHHHHHHH---hhhHHH-HHHHHhhhhhhhCCHHHhcchH
Confidence 22222222 222221 1223566777788888888876
No 213
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.75 E-value=0.0048 Score=48.93 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=49.0
Q ss_pred hhhhhhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc
Q 045175 3 AFQQFTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK 60 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 60 (177)
.++...+.+.+..|+|+|++ -+|++..+ .++.+++..+...+..+++|.++||+.+|
T Consensus 267 ~f~~~~~~~~l~~y~PtY~~~VL~f~v~~-~G~~salP~l~~~~~k~~~g~lsD~l~~~ 324 (466)
T KOG2532|consen 267 AFGGNWGFYLLLTYLPTYLKEVLGFDVRE-TGFLSALPFLAMAIVKFVAGQLSDRLTFR 324 (466)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCCChhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35566778899999999995 57999888 88999999999999999999999998663
No 214
>PRK10054 putative transporter; Provisional
Probab=96.67 E-value=0.0021 Score=49.75 Aligned_cols=90 Identities=8% Similarity=-0.090 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (177)
........+......+..+++.||.+||+.+..+..+..+..+...... + ......+....++.+.. ..
T Consensus 247 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~g~~-~~ 315 (395)
T PRK10054 247 AVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----N------SLLLWGMSAAVFTVGEI-IY 315 (395)
T ss_pred HHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----h------HHHHHHHHHHHHHHHHH-HH
Confidence 3344444444455567778999999999988877766666554443210 0 01122222233332222 22
Q ss_pred ccccceeeccccccccccchh
Q 045175 113 GPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+..+....+..|++.|++..
T Consensus 316 ~p~~~~~~~~~~p~~~~~~~~ 336 (395)
T PRK10054 316 APGEYMLIDHIAPPGMKASYF 336 (395)
T ss_pred HhhHHHHHHHhCCcccceehH
Confidence 334446788888998887663
No 215
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=96.60 E-value=0.0077 Score=49.69 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=49.5
Q ss_pred hhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHH-HHHhhhhhheeEecccCC--chhhhHhhHHHHHHHH
Q 045175 5 QQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAG-TNAVGTIIGIYLIDHFGR--KKLALSSLTGVIISLV 75 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~ 75 (177)
......+....|.|.++ +.+|++..+ +..+.....+ +..+|.+++|+++||+++ |+.+..+.+...+..+
T Consensus 341 ~~~~~~~~~~~~lP~yl~~~~g~s~~~-ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 341 IDSLAFNGYITFLPKYLENQYGISSAE-ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 44556677888999999 568998887 6656555454 567999999999999984 4555555555554443
No 216
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=96.57 E-value=0.0073 Score=49.93 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 045175 21 VQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVI 99 (177)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (177)
....|.++.. +..+...+.....+..+++|+++|+ +||++.++.+.++..++..+.+.... .... ........++
T Consensus 15 ~~~lg~~~~~-A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~--~~~~~~~~l~ 90 (654)
T TIGR00926 15 LNFLGFSEST-STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSG--HPLHDLLDLL 90 (654)
T ss_pred HHHcCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-cccc--cchHHHHHHH
Confidence 3567888877 6666666666678889999999997 89999999888887777765544211 1100 0011112233
Q ss_pred HHHHHhhhhccccccccceeecccccccc
Q 045175 100 GLALYITFFAPGMGPVPWTVNSEVYREQY 128 (177)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 128 (177)
++.+..++.+..-.... +...|.++++.
T Consensus 91 gLaLia~G~GgiKp~vs-af~gdqf~~~~ 118 (654)
T TIGR00926 91 GLALIALGTGGIKPCVS-AFGGDQFEERQ 118 (654)
T ss_pred HHHHHHhhccccccCch-hhhHhhcCccc
Confidence 33333333333334444 88888887654
No 217
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.52 E-value=0.011 Score=42.66 Aligned_cols=107 Identities=25% Similarity=0.190 Sum_probs=59.7
Q ss_pred HhhHHHHHHcCCCCc--hHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchh
Q 045175 15 YYNPTIVQMASFQSN--QLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEV 92 (177)
Q Consensus 15 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
...+.+..+.+.+.. . ..+......+...++.++.|.+.||+|||+.++.+........+...... . .
T Consensus 23 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~----- 92 (338)
T COG0477 23 PALPLLLSTLSLSSGRLL-YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---N-V----- 92 (338)
T ss_pred HHHHHHHHHcCCCchhHH-HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---c-c-----
Confidence 344555555554442 3 56677777777788889999999999999777766654333322222211 0 0
Q ss_pred HHHHHHHHHHHHhhhhccccccccceeecccccc-ccccch
Q 045175 93 YGWIAVIGLALYITFFAPGMGPVPWTVNSEVYRE-QYRGIC 132 (177)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~R~~~ 132 (177)
.....++.....+...+ ...+...++..|.+|. +.|+..
T Consensus 93 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 132 (338)
T COG0477 93 GLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLA 132 (338)
T ss_pred hHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHH
Confidence 02222222222222222 3334444889999987 445443
No 218
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.48 E-value=0.0065 Score=48.25 Aligned_cols=53 Identities=9% Similarity=-0.121 Sum_probs=36.1
Q ss_pred hhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-----CchhhhHhhHHH
Q 045175 16 YNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-----RKKLALSSLTGV 70 (177)
Q Consensus 16 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----rr~~~~~~~~~~ 70 (177)
..+.++ +++|++..+ .........+...+ .+++|+++||++ ||+.++.+.++.
T Consensus 47 ~~~~~l~~~lg~s~~~-i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 47 PLSPMLTDDLGLDGAR-YQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred hhhHHHHHhcCCCHHH-HHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence 344445 567999887 65666666776666 445999999996 566566655444
No 219
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0093 Score=45.44 Aligned_cols=73 Identities=16% Similarity=0.057 Sum_probs=58.0
Q ss_pred hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc-CCchhhhHhhHHHHHHHHHH
Q 045175 4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-GRKKLALSSLTGVIISLVLL 77 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~ 77 (177)
-.|....|....|.|.++.+.|+++.+ +........+++.+.++....+++|. .+|+..+.....+.+..+.+
T Consensus 218 GlqS~~~Y~~~~WLP~ili~~G~sa~~-aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~ 291 (395)
T COG2807 218 GLQSLLYYIVIGWLPAILIDRGLSAAE-AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGL 291 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHcCCCHHH-hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 346667899999999999999999998 99899999999999999999999975 46666655555555554433
No 220
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.36 E-value=0.011 Score=45.45 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=31.3
Q ss_pred HHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC
Q 045175 14 MYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR 59 (177)
Q Consensus 14 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 59 (177)
..+.+.+.++ .|.+..+ ..+......++..++.++.+++.||++|
T Consensus 227 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 272 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMT-VSILFILPIPAAFFGAWFAGRPNKRFST 272 (394)
T ss_pred HHhChHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566644 7887766 5666666667777888888888888873
No 221
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=96.28 E-value=0.0077 Score=46.89 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=42.4
Q ss_pred hhchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHh
Q 045175 7 FTGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSS 66 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~ 66 (177)
+........+.|.+++ ..|++..+ .+.+.++..+..++.+++.|.++||+|.||-+++.
T Consensus 20 Ff~~gi~~pF~~iWL~~~~GLs~~~-iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~ 79 (412)
T PF01306_consen 20 FFIWGIFLPFFPIWLTQVAGLSGTE-IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWF 79 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCCCHHH-HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHH
Confidence 3334445555667775 47999998 88888888889999999999999999966665543
No 222
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=96.23 E-value=0.018 Score=45.98 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHH-HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVII-SLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
.+..++..+...+..++.|.++|+-|+||.++......++ +..++.. ..++ . .....++..+...+++..
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~----v~~~---~--~~~~~~l~iia~v~~~~~ 143 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF----VSPG---Q--WWLALVLFIIANVGYEAS 143 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH----hCcc---h--HHHHHHHHHHHHHHHHHH
Confidence 4566677777888999999999999987777654444333 3322222 1111 1 223333333333344333
Q ss_pred cccccceeeccccccccc
Q 045175 112 MGPVPWTVNSEVYREQYR 129 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R 129 (177)
.....+++.|+.+++.+
T Consensus 144 -~vfyna~LP~la~~~~~ 160 (477)
T PF11700_consen 144 -NVFYNAYLPDLARPEPR 160 (477)
T ss_pred -HHHHHHHhHhhcCCChh
Confidence 33344899999888777
No 223
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.08 E-value=0.034 Score=43.07 Aligned_cols=109 Identities=15% Similarity=-0.040 Sum_probs=59.4
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC-----CchhhhHhhHHHHHH-HHHHHHHHHhcCC---CCc-ch
Q 045175 22 QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG-----RKKLALSSLTGVIIS-LVLLSWAFISGSS---ASS-SE 91 (177)
Q Consensus 22 ~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g-----rr~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~-~~ 91 (177)
.+++++... .......-.+. .+..+..|+.+|+.+ ||..+++.-.+.... ..+.......... +.+ +.
T Consensus 8 vEL~vpA~l-v~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 8 VELGVPAWL-VALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHhccHHHH-HHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 566776655 44444444443 467899999999999 888877654443333 2222222222222 110 11
Q ss_pred hHH-HHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 92 VYG-WIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 92 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... ....+...+++.+....-.+.. +..+|..|++.|++..
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~l-ALl~D~~~e~~R~~~v 127 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFL-ALLADLAPEERRPRVV 127 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHH-HHHHhcCCHhhhhhhH
Confidence 111 1122222333333333333444 8999999999999987
No 224
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.016 Score=44.19 Aligned_cols=106 Identities=14% Similarity=-0.023 Sum_probs=73.4
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.......+.+.+++|++.+. +..++++..++..+.+++..++..|+|.++.+..+.++..++.++=...
T Consensus 29 tsvgPLL~~Ir~~~gls~s~-aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---------- 97 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSV-AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG---------- 97 (395)
T ss_pred hhhhhhHHHHHHHhcccHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----------
Confidence 34445567777889999888 9999999999999999999999999999988877776655554322110
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG 130 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 130 (177)
.....+....+.+.+...+-.-.+ ..+-+-||++.-.
T Consensus 98 --~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~~~~ 134 (395)
T COG2807 98 --GLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKRVGL 134 (395)
T ss_pred --cHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccchhh
Confidence 023344444444444444434456 7888888887644
No 225
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=95.71 E-value=0.0012 Score=52.42 Aligned_cols=106 Identities=5% Similarity=-0.202 Sum_probs=68.7
Q ss_pred HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc--CCCCcchhHHHHHHHH
Q 045175 23 MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG--SSASSSEVYGWIAVIG 100 (177)
Q Consensus 23 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 100 (177)
..|.+... .+.......++.+++..+.+++.+|++.|+++.++.++.+++.+......... .... .........
T Consensus 282 ~lG~s~~~-~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi---~~~~~~~~~ 357 (468)
T TIGR00788 282 CLPGGPSF-SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI---SDEVFVLGD 357 (468)
T ss_pred cCCCCcch-hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCC---CCeeeeeeh
Confidence 45778777 77777778899999999999999999999999888887777664422111000 0000 001112222
Q ss_pred HHHHhhhhccccccccceeeccccccccccchh
Q 045175 101 LALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+.+...+....+.. .+..+..|++.+++..
T Consensus 358 ~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~ 389 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFL-VLLARLCPSGCESSVF 389 (468)
T ss_pred hHHHHHHHHHHHccHH-HHHHHhCCCCceehHH
Confidence 3333444444555565 8999999999998776
No 226
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.056 Score=41.85 Aligned_cols=69 Identities=14% Similarity=0.053 Sum_probs=53.3
Q ss_pred hhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 10 INTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 10 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
-..+..|.+.+..+ .|.++.+ +....+...++.++|.+++.++..|+...|.+.....+..+.++....
T Consensus 252 Eva~gsfl~~y~~~~~g~~~~~-aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l 321 (422)
T COG0738 252 EVAIGSFLVSYLEELLGLNEQQ-AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL 321 (422)
T ss_pred HHHHHHHHHHHHHhcCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888855 6788887 778888889999999999999999999888887776666555544444
No 227
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=94.85 E-value=0.16 Score=39.98 Aligned_cols=115 Identities=17% Similarity=0.121 Sum_probs=73.9
Q ss_pred hhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHH
Q 045175 16 YNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGW 95 (177)
Q Consensus 16 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (177)
.+..|.++.|+++.. ....-....+.++.|.+...++.+|+|..+.=+++.....++..+....+....++. +.....
T Consensus 280 lmt~yl~~~G~s~~~-igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-~~~s~~ 357 (432)
T PF06963_consen 280 LMTAYLKSQGYSPSV-IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-SSISAY 357 (432)
T ss_pred HHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHH
Confidence 345666677999887 666777778888999999999999999888888888888877776665555444321 011111
Q ss_pred HHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 96 IAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+.+....-.+.- ++-....-+..|..|+++|+...
T Consensus 358 ~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~ 394 (432)
T PF06963_consen 358 LLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAVS 394 (432)
T ss_pred HHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHH
Confidence 11211111111111 11222236788999999999876
No 228
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=94.84 E-value=0.12 Score=41.27 Aligned_cols=129 Identities=12% Similarity=-0.044 Sum_probs=70.6
Q ss_pred hhhhhchhHHHHhhHHHH-HH-cCCCCch-----H----HHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHH
Q 045175 4 FQQFTGINTVMYYNPTIV-QM-ASFQSNQ-----L----ALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVI 71 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~-~~-~g~~~~~-----~----~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~ 71 (177)
+.++.+.+....|...+. ++ ++-++.. . ..+......+...+.+++..++.+|+|+ |+.+..+.++.+
T Consensus 268 ffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~ 347 (477)
T TIGR01301 268 CLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILA 347 (477)
T ss_pred HHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 344555666666666666 33 3332211 0 1233334444445666777888999985 677788877777
Q ss_pred HHHHHHHHHHHhcCC--C--------CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 72 ISLVLLSWAFISGSS--A--------SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 72 ~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
++.....+.....++ . .......+..++.....+..+. ....+||+++++..|++.|+.+.
T Consensus 348 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A-~~~siPfal~s~~~~~~~~~~G~ 418 (477)
T TIGR01301 348 ICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLA-ITYSIPFALASIRSSNLGAGQGL 418 (477)
T ss_pred HHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHH-HHHHHhHHHHHHHccccCCCCcc
Confidence 777655543321110 0 0000001334444444444444 33567889999999977776655
No 229
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=94.76 E-value=0.094 Score=41.25 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC-chhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175 24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR-KKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA 102 (177)
Q Consensus 24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (177)
.|.+... +++......+++++++.+.|.+.||.+. |..+++......++...+ ........ ..+.....+
T Consensus 296 sgY~~~~-aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l-~~~t~~~~-------~~viv~~t~ 366 (480)
T KOG2563|consen 296 SGYEGVF-AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLML-LTCTLFLG-------DSVIVFTTC 366 (480)
T ss_pred ccCCccc-cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhhccCC-------ceEehhhhH
Confidence 3555444 7888888899999999999999999764 444555444444443111 11111111 111222223
Q ss_pred HHhhhhccccccccceeeccc-cccccccchh
Q 045175 103 LYITFFAPGMGPVPWTVNSEV-YREQYRGICG 133 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~e~-~p~~~R~~~~ 133 (177)
...+.+..+..|+..-+..|. +|..++....
T Consensus 367 ~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsG 398 (480)
T KOG2563|consen 367 GLLGFFGTGYLPIGFELGVETTYPVAEGTSSG 398 (480)
T ss_pred HHHHHhhcCCCCcceeeeeeeccccCCcccce
Confidence 333444555666776788886 7777766554
No 230
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.45 E-value=0.15 Score=42.54 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=51.7
Q ss_pred hhhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHH-HHHHHHhhhhhheeEecccC--CchhhhHhhHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLA-VAGTNAVGTIIGIYLIDHFG--RKKLALSSLTGVIISLVL 76 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~-~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~ 76 (177)
.+.+...+.....|+|.|+ +++|.+.+. +..++.. ..-+..+|.+++|++..|+. -|.+..+..+...+..+.
T Consensus 401 ~~~~~~~~~G~~tFlPKyLE~Qfg~sas~-An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 401 SVIESLAITGYITFLPKYLETQFGISASL-ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHHHHHhhHHHhhHHHHHHHcCCCHHH-HHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999 778999888 6555544 44455789999999999864 455555544444444433
No 231
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=94.29 E-value=0.23 Score=38.86 Aligned_cols=90 Identities=18% Similarity=-0.003 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHH-HHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVI-ISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
....++..+...+-+++.|.++|+.|+||..+..+.... ++.+++... .+ + ...+..++++.+....+...
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i---~~-~----s~~~~~l~~~il~~i~~~~s 132 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFI---PP-G----SYLLLLLLFLILASIGFEFS 132 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHh---CC-C----chHHHHHHHHHHHHHhcchh
Confidence 345555666667888999999999997777654444333 333222221 11 1 11333344444444444433
Q ss_pred cccccceeeccccccccccc
Q 045175 112 MGPVPWTVNSEVYREQYRGI 131 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~ 131 (177)
.....+++.++.+++.-++
T Consensus 133 -~Vfyds~L~~~~~k~~~~r 151 (438)
T COG2270 133 -NVFYDSMLPRLTTKDNMGR 151 (438)
T ss_pred -heehhhHhhhhcCccccCc
Confidence 3344488888887754333
No 232
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=94.27 E-value=0.35 Score=37.72 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=33.7
Q ss_pred hchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEe-cccCCch
Q 045175 8 TGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLI-DHFGRKK 61 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~-d~~grr~ 61 (177)
...+....+.|.+.++ .|.+..+ ..+.......+..++..+.+.+. |+.++|.
T Consensus 232 ~~~~~~~~~~P~~l~~~~g~s~~~-~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 232 IPMMSWVAVSPVILIDAGGMTTSQ-FAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHHHHhChHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 3344555567888854 5888777 66666666667777777777655 4454443
No 233
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=94.10 E-value=0.1 Score=41.86 Aligned_cols=97 Identities=8% Similarity=-0.099 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhh----hheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhc
Q 045175 34 LLSLAVAGTNAVGTI----IGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFA 109 (177)
Q Consensus 34 ~~~~~~~~~~~i~~~----~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (177)
+...+..+..++..+ +++++.+|++.++.+.++.++.+++.+.+........+.. ..+..+.+....+.+. ..
T Consensus 320 ~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~--~vs~~~~~~~~~l~~~-ge 396 (500)
T PRK09584 320 QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAG--IVSVNWLIASYGLQSI-GE 396 (500)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccCHHHHHHHHHHHHH-HH
Confidence 344444433344444 4466677776667777888888888766555433221111 1112233333333333 33
Q ss_pred cccccccceeeccccccccccchh
Q 045175 110 PGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 110 ~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....|....+..+..|++.|+..+
T Consensus 397 ~~~~p~g~s~~~~~aP~~~rg~~~ 420 (500)
T PRK09584 397 LMISGLGLAMVAQLVPQRLMGFIM 420 (500)
T ss_pred HHHhHHHHHHHHHhCcHHHHHHHH
Confidence 344555558899999999999887
No 234
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=92.86 E-value=0.11 Score=41.60 Aligned_cols=98 Identities=9% Similarity=-0.054 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchh-------hhHhhHHHHHHHHHHHHHHH-hcCCCCcchhHHHHHHHHHHHH
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKL-------ALSSLTGVIISLVLLSWAFI-SGSSASSSEVYGWIAVIGLALY 104 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 104 (177)
.+......+..++..++.+++.||++||+. +.++.++.+++.+....... ....+. ....++......+.
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~i~~~~l~ 389 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQG--LTSPWFIVLVYLFQ 389 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHHH
Confidence 344444445566778888999999998873 56666666655543322111 111110 11123333333444
Q ss_pred hhhhccccccccceeeccccccccccchh
Q 045175 105 ITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+.+.... .+....+..+..|++.++.++
T Consensus 390 g~Ge~~~-~~~g~~~~~~~aP~~~~g~~~ 417 (489)
T PRK10207 390 SLGELFI-SALGLAMIAALVPQHLMGFIL 417 (489)
T ss_pred HHHHHHH-hHHHHHHHHHhChHHHHHHHH
Confidence 4443333 344447888899999999887
No 235
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=92.84 E-value=0.04 Score=44.27 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=73.6
Q ss_pred HHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHH
Q 045175 19 TIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIA 97 (177)
Q Consensus 19 ~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (177)
.++ ++.|-.+.. -+.......++.++.-++.+++.+|+|+-+++..++.+..+=.+.++... +.|..
T Consensus 395 fWHled~~~~~~L-fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-----------n~W~v 462 (618)
T KOG3762|consen 395 FWHLEDLGGIKTL-FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-----------NPWMV 462 (618)
T ss_pred HHHHhhcCCccee-eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-----------Cchhe
Confidence 344 666644443 44555555666788888999999999999999988888877776666643 14444
Q ss_pred HHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 98 VIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+-.-.+-++..+..|..+. +|+....|++.|+++.
T Consensus 463 LPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q 497 (618)
T KOG3762|consen 463 LPIEILQGITHALIWAAII-SYASHVAPPGLRATAQ 497 (618)
T ss_pred eeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHH
Confidence 4445566666677777777 8999999999998876
No 236
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=92.79 E-value=0.052 Score=42.74 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc----cCCchhhhHhhH-HHHHHHHHHHHHHHh----c
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH----FGRKKLALSSLT-GVIISLVLLSWAFIS----G 84 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~----~grr~~~~~~~~-~~~~~~~~~~~~~~~----~ 84 (177)
..|.|.+.++.|++... ...+-...-+.+++.+++.|..+|| +||||.++.... ...+..+++...... .
T Consensus 52 lsy~tPyl~~lGvphk~-~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lg 130 (498)
T KOG0637|consen 52 LSYLTPYLQSLGVPHKW-SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLG 130 (498)
T ss_pred hccccHHHHHcCCCccc-ccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhc
Confidence 34566677788998775 4444444556667889999999996 898888764443 334444443333322 1
Q ss_pred CCCCc--chhHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175 85 SSASS--SEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI 131 (177)
Q Consensus 85 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 131 (177)
++... ...+....++...+.-+......+|.- ++..|+.....|.+
T Consensus 131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~ 178 (498)
T KOG0637|consen 131 DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKT 178 (498)
T ss_pred CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhh
Confidence 11111 012222334444455555555566777 88888876655544
No 237
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=92.41 E-value=0.21 Score=39.08 Aligned_cols=90 Identities=14% Similarity=0.052 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
-....++..+...+.-.+..++.+|+|.|+.++++..++.+=.+..+... ......+.-.+-+..+...
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-----------~~~~i~~~klLH~~e~~l~ 329 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-----------NPWVISLIKLLHALEFPLL 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------SHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-----------chHHHHHHHHHHHHHHHHH
Confidence 34556666677788888999999999999999999888888877666532 1444444455555555555
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
..+.. -|+.+.+|++..++..
T Consensus 330 lva~f-kYI~~~fd~rlsAt~y 350 (412)
T PF01306_consen 330 LVAAF-KYITAHFDKRLSATLY 350 (412)
T ss_dssp HHHHH-HHHHHHS-GGGHHHHH
T ss_pred HHHHH-HHHHHhCCHhHHHHHH
Confidence 55555 7999999999877654
No 238
>PTZ00207 hypothetical protein; Provisional
Probab=92.12 E-value=0.068 Score=43.78 Aligned_cols=114 Identities=10% Similarity=0.035 Sum_probs=58.7
Q ss_pred hhhhchhHHHHhhHHHHHHc-CCCCchH-HHHHHHHHHHHHHhhhhhheeEecccCCc--------hh-hhHhhHHHHHH
Q 045175 5 QQFTGINTVMYYNPTIVQMA-SFQSNQL-ALLLSLAVAGTNAVGTIIGIYLIDHFGRK--------KL-ALSSLTGVIIS 73 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~d~~grr--------~~-~~~~~~~~~~~ 73 (177)
+...+...+...+-.+.+.. |.+.+.. .....++..+.+.+|.+..|.+....-|| +. +.+..+ +.+.
T Consensus 364 cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~ 442 (591)
T PTZ00207 364 CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIIT 442 (591)
T ss_pred HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHH
Confidence 33334444455566677777 6623220 11256777888888988888877222221 12 222222 3333
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccch
Q 045175 74 LVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGIC 132 (177)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~ 132 (177)
.+++.... + ...+.+...+.+.+.+..+.... ..++|+|- +.-|+-
T Consensus 443 ~lll~~~~---p--------~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~ 488 (591)
T PTZ00207 443 MLTLFLTL---P--------KAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKH 488 (591)
T ss_pred HHHHHHHC---C--------ccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHH
Confidence 33322221 1 01244445555566666666666 78888887 554433
No 239
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=0.47 Score=37.76 Aligned_cols=89 Identities=8% Similarity=-0.142 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPG 111 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (177)
......+.+....++.++.+.+.|++|.|..+..+........+.+... ..+.......+.+.+.+.-
T Consensus 52 Gy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~------------N~y~~yfssallG~Gaall 119 (461)
T KOG3098|consen 52 GYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP------------NSYYLYFSSALLGFGAALL 119 (461)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc------------chHHHHHHHHHhhhhHHhe
Confidence 4555777788889999999999999999999998888777666443332 1455566667777777776
Q ss_pred cccccceeeccccccccccchh
Q 045175 112 MGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 112 ~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
|..-. .|++|..+.+.+.+..
T Consensus 120 w~GqG-~ylt~~st~~tie~Ni 140 (461)
T KOG3098|consen 120 WTGQG-GYLTSNSTRETIERNI 140 (461)
T ss_pred ecccc-eehhhcCChhhHHHHH
Confidence 76667 8999998887666554
No 240
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=91.26 E-value=0.027 Score=41.63 Aligned_cols=53 Identities=23% Similarity=0.144 Sum_probs=35.5
Q ss_pred HHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 21 VQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 21 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
++.+|+.+.+ ...+........++...+.|.++||.|||+..+..++..++++
T Consensus 64 YstYgFgkG~-IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC 116 (454)
T KOG4332|consen 64 YSTYGFGKGD-IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC 116 (454)
T ss_pred ehhcCccCCc-cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH
Confidence 3566776666 4444444445556777788999999999998766555555443
No 241
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=90.47 E-value=0.84 Score=35.62 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=61.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHhhhhhheeEec-ccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175 24 ASFQSNQLALLLSLAVAGTNAVGTIIGIYLID-HFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA 102 (177)
Q Consensus 24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (177)
+|++..+ ...++.....+.++|-...+++.. |.++++...+++.+..++..++...-...+ .........
T Consensus 239 fgmsv~e-TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~--------~~~~~~~~~ 309 (403)
T PF03209_consen 239 FGMSVGE-TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS--------PWLFRPGVF 309 (403)
T ss_pred cCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc--------chHHHHHHH
Confidence 5788888 888999999998999888887655 677777777777777777665544322111 222333333
Q ss_pred HHhhhhccccccccceeeccccccccccchh
Q 045175 103 LYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+++.+.+....... +...++.+++..|..+
T Consensus 310 l~G~g~G~f~vgal-s~mM~lt~~~~aG~~m 339 (403)
T PF03209_consen 310 LLGLGNGLFTVGAL-SLMMDLTSAGRAGLFM 339 (403)
T ss_pred HHHHhhhHHHHHHH-HHHHhCCCCcchhHHH
Confidence 43433333333233 5666666666555443
No 242
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=90.32 E-value=0.083 Score=42.89 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhhhhchhHHHHhhHHHH-HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC--CchhhhHhhHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIV-QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG--RKKLALSSLTGVIISLV 75 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~ 75 (177)
...+.....+...|.|.++ .+++.+.+........+.-.+..+|.+++|++..|+. .|+......+...+..+
T Consensus 314 ~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~ 389 (539)
T PF03137_consen 314 GVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI 389 (539)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 3455566778889999999 6789988873333334444466899999999999974 45555544444444443
No 243
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=88.51 E-value=0.93 Score=36.53 Aligned_cols=99 Identities=7% Similarity=-0.033 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCC--chh-----hhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGR--KKL-----ALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALY 104 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~gr--r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (177)
+.+..++..+..++.+++.+++-.|.+| |.. +-.+.++.+++.+.+........++. ..+..+ ++...++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~--~~s~~w-l~~~~~~ 386 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYG--HSSLPL-MVLGLAV 386 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CcCHHH-HHHHHHH
Confidence 4556666666556666666655455522 211 45666666666655544332222211 112333 3333333
Q ss_pred hhhhccccccccceeeccccccccccchh
Q 045175 105 ITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....-....|+..+.++++.|++.|+..+
T Consensus 387 ~t~gEl~~sPvgls~~~~laP~~~~g~~m 415 (493)
T PRK15462 387 MGFAELFIDPVAMSQITRIEIPGVTGVLT 415 (493)
T ss_pred HHHHHHHHChHHHHHHHHhChHHHHHHHH
Confidence 34444566778779999999999999887
No 244
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=87.70 E-value=0.26 Score=38.59 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 18 PTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 18 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
|++... .|++.++....+.-+..-..+...++...+.|.+|-|++++.+.+...+...++..
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~ 90 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF 90 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444443 58888774444444444455667777888999999999998888877777665544
No 245
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=87.61 E-value=1.1 Score=35.74 Aligned_cols=97 Identities=8% Similarity=-0.077 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhhhhhhe----eEecc-cCCchhh--hHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhh
Q 045175 34 LLSLAVAGTNAVGTIIGI----YLIDH-FGRKKLA--LSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYIT 106 (177)
Q Consensus 34 ~~~~~~~~~~~i~~~~~g----~l~d~-~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (177)
+...+..+..++..++.. ++.+| .+.+... .++.++.+++....+.......++. ..+.++.+....+.+.
T Consensus 316 ~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~--~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 316 WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGG--LTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHHHHHHHHHHHH
Confidence 444444444455555433 44444 2223333 5666666666655443322211110 1113333333444333
Q ss_pred hhccccccccceeeccccccccccchh
Q 045175 107 FFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 107 ~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+- ....|..+.+..+..|++.|++..
T Consensus 394 ge-~~~~p~~~~~~~~~aP~~~~g~~~ 419 (475)
T TIGR00924 394 GE-LMISPLGLSWWTKIAPQRLMGQML 419 (475)
T ss_pred HH-HHHhHHHHHHHHHhCCHHHHHHHH
Confidence 33 344556668999999999999887
No 246
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=85.34 E-value=1.9 Score=34.11 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=36.7
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC----Cchh-hhHhhHHHHHHHHHHH
Q 045175 17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG----RKKL-ALSSLTGVIISLVLLS 78 (177)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g----rr~~-~~~~~~~~~~~~~~~~ 78 (177)
.|.+.+++|++..+ .........+. -..-++.|.++|.+. ||+. ++++.++..++.+.++
T Consensus 13 ~~~l~~~l~ls~~~-~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~ 77 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQ-LQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLA 77 (433)
T ss_pred HHHHHHHcCCCHHH-HHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 34455778999877 55555544443 356789999999862 4444 4555555544444333
No 247
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=82.48 E-value=0.4 Score=39.00 Aligned_cols=64 Identities=16% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 15 YYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 15 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
....++-+.+++++.+ ..++.+...++.++..++..++.+|-.|-+.+-.+.++++++.++++.
T Consensus 24 ~~lttiErRF~l~S~~-~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 24 SSLTTIERRFGLSSSQ-SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhc
Confidence 3345666889999998 899999999999999999999999977777777888888888776654
No 248
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=77.28 E-value=4.6 Score=32.48 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHH-HhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 32 ALLLSLAVAGTN-AVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 32 ~~~~~~~~~~~~-~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
..++-....+.. .+..++.+++++|++|++++-+..........+++...+
T Consensus 45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~ 96 (472)
T TIGR00769 45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIY 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333 344788999999999999987766666666666665543
No 249
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=75.56 E-value=0.69 Score=34.81 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcc
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAP 110 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (177)
-..+.+...-...+-.+++|++.|| +|-|...++.++...++.++++.-.. .++.+.++...++++++.-.
T Consensus 81 ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi--------~~aFw~M~~GRF~FGIGgES 152 (459)
T KOG4686|consen 81 FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI--------SHAFWTMLAGRFLFGIGGES 152 (459)
T ss_pred eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH--------HHHHHHHHhhheeeccCchh
Confidence 3455666667778889999999997 56665544444444444433332111 22244455555555544322
Q ss_pred ccccccceeeccccccccccchh
Q 045175 111 GMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 111 ~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
- ...-..|..-.|..++-+...
T Consensus 153 l-AVaQN~yav~wFKGKELn~vf 174 (459)
T KOG4686|consen 153 L-AVAQNKYAVYWFKGKELNFVF 174 (459)
T ss_pred h-hhhhcceeEEEecCccccchh
Confidence 2 222236666677766655544
No 250
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=72.86 E-value=4 Score=33.02 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=11.3
Q ss_pred eeEecccCCchhhhHh
Q 045175 51 IYLIDHFGRKKLALSS 66 (177)
Q Consensus 51 g~l~d~~grr~~~~~~ 66 (177)
.....|+||||..++-
T Consensus 61 s~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 61 SVYSKRIGRRKSWIIP 76 (544)
T ss_pred hhcccccCCcchhhhH
Confidence 3445589999997654
No 251
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=69.60 E-value=6.1 Score=31.05 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=54.1
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccC--CchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 045175 22 QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFG--RKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVI 99 (177)
Q Consensus 22 ~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (177)
..+|+++.+ ...+....++.+.+.+....+..||.. -+-.+..+..++.-..+.++.. . .+....+
T Consensus 290 ~rfg~ss~~-~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~---~--------~~~~l~~ 357 (451)
T KOG2615|consen 290 GRFGYSSMQ-QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA---R--------TPVVLYL 357 (451)
T ss_pred CccCCChhh-heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc---c--------cchhhhH
Confidence 446777776 555566667777777888888888765 3434444333333333222221 0 1222222
Q ss_pred HHHHHhhhhccccccccceeeccccccccccchh
Q 045175 100 GLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
...+..+........+. .+.....|...||+..
T Consensus 358 ~s~l~sf~~A~~vt~Lt-~Lv~~~~~~~qrG~~~ 390 (451)
T KOG2615|consen 358 GSTLKSFSTASVVTCLT-SLVHKYGPQSQRGTLN 390 (451)
T ss_pred HHHHHHHHHHHhhHHHH-HHHHhcCCcccchHHH
Confidence 23333333333333444 7778889999999887
No 252
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=68.09 E-value=8.7 Score=28.69 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.4
Q ss_pred HHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeE---------ecccCCchhh
Q 045175 14 MYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYL---------IDHFGRKKLA 63 (177)
Q Consensus 14 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l---------~d~~grr~~~ 63 (177)
..|.-.++++.|.++.. ...+..+..+...+..++.|.. .||+|||+..
T Consensus 37 FTYlllfltqiglsp~~-~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 37 FTYLLLFLTQIGLSPSS-RAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred HHHHHHHHHHhcCCcch-hHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 34455556778887776 5577777888888888887644 4689998874
No 253
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=56.76 E-value=27 Score=28.39 Aligned_cols=121 Identities=12% Similarity=-0.023 Sum_probs=62.8
Q ss_pred chhHHHHhhHHHH-HH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCc--hh-----hhHhhHHHHHHHHHHHH
Q 045175 9 GINTVMYYNPTIV-QM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRK--KL-----ALSSLTGVIISLVLLSW 79 (177)
Q Consensus 9 ~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr--~~-----~~~~~~~~~~~~~~~~~ 79 (177)
+....+.|..... .+ +|++.. ..+..+...+.-++..++..++.-+.+|| .. +-.+.++++++.++...
T Consensus 303 ~~ssl~~~a~~~v~~~~~g~~vp--~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~ 380 (498)
T COG3104 303 MGSSLNLYADRNVNRQIFGFEVP--PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLL 380 (498)
T ss_pred ccchHHHHHHHhhcccccceecC--HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3355555655554 33 333332 44555655555566666666655553332 22 23455555555554444
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 80 AFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.......++ ...+..+++...+++...-....|+.-.+...+.|+...+..+
T Consensus 381 ~~~~~~~~~--~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~m 432 (498)
T COG3104 381 AGIWFGGPS--GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIM 432 (498)
T ss_pred HHHhhcCCC--CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHH
Confidence 322222111 1123344444455555555566677668888889998777665
No 254
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=53.19 E-value=1.2e+02 Score=24.27 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=37.8
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCch--HHHHHHHHHHHHHHhhhhhheeEecccCCchhhhH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQ--LALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALS 65 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~ 65 (177)
+....+|.+-+..|...+-++..-+++. .-+.+-.+..+.+.++++..|++..++.+..-+..
T Consensus 256 Wa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l 320 (412)
T PF01770_consen 256 WAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELAL 320 (412)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHH
Confidence 3455667777777776666665222211 13455566667777888888888666666444433
No 255
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=51.78 E-value=38 Score=20.86 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhhheeEecccCCchhh
Q 045175 37 LAVAGTNAVGTIIGIYLIDHFGRKKLA 63 (177)
Q Consensus 37 ~~~~~~~~i~~~~~g~l~d~~grr~~~ 63 (177)
....++..++..+.+.+.|..|.|..+
T Consensus 94 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 120 (141)
T TIGR00880 94 AGIALGPLLGPPLGGVLAQFLGWRAPF 120 (141)
T ss_pred HhHHHHHHHhHHhHHHHhcccchHHHH
Confidence 334444555555555555555544433
No 256
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.62 E-value=23 Score=22.26 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=17.5
Q ss_pred HHHHhhhhhheeEeccc-CCchhhhHhhH
Q 045175 41 GTNAVGTIIGIYLIDHF-GRKKLALSSLT 68 (177)
Q Consensus 41 ~~~~i~~~~~g~l~d~~-grr~~~~~~~~ 68 (177)
+.+.+.....||+.||+ |-+++-++.+.
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 44455556678999985 66766554433
No 257
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=51.55 E-value=31 Score=17.29 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=10.5
Q ss_pred ecccCCchhhhHhhHHHHHH
Q 045175 54 IDHFGRKKLALSSLTGVIIS 73 (177)
Q Consensus 54 ~d~~grr~~~~~~~~~~~~~ 73 (177)
+|.-||-++.+++.+.....
T Consensus 2 ~~ttGRIPLWlVgtv~G~~v 21 (40)
T PF01788_consen 2 ANTTGRIPLWLVGTVAGIAV 21 (40)
T ss_dssp ---TTSS-HHHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHH
Confidence 46678888887766654333
No 258
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=50.09 E-value=1e+02 Score=22.88 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhhhhheeEecc-cCCchhhh
Q 045175 35 LSLAVAGTNAVGTIIGIYLIDH-FGRKKLAL 64 (177)
Q Consensus 35 ~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~ 64 (177)
...+...+..+|.+..|..... +.||+.+.
T Consensus 146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~ 176 (267)
T PF07672_consen 146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIH 176 (267)
T ss_pred HHHHHHHHHhhhceeeccchhhhhhhhhHHH
Confidence 3344444455666677777665 44554433
No 259
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=49.85 E-value=29 Score=27.94 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=57.5
Q ss_pred cCCCCchHHHHHHHHHHHHHHhhhhhhe-eEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 045175 24 ASFQSNQLALLLSLAVAGTNAVGTIIGI-YLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLA 102 (177)
Q Consensus 24 ~g~~~~~~~~~~~~~~~~~~~i~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (177)
++++.++ .............++..+.. .+...+|-|+....+.....+....+++... .+.+.. ..
T Consensus 272 f~w~~~~-~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~-----------~w~~~~-~~ 338 (463)
T KOG2816|consen 272 FGWNKKE-FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE-----------TWMMFA-AG 338 (463)
T ss_pred cCcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc-----------chhhhH-HH
Confidence 4677776 44455556666778887776 6777788888777777777777766666431 111111 11
Q ss_pred HHhhhhccccccccceeeccccccccccchh
Q 045175 103 LYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
... .+.....+..-+..+-+.+++.||+..
T Consensus 339 v~~-~~~~~~~pa~~s~~s~~v~~~e~g~v~ 368 (463)
T KOG2816|consen 339 VVV-ALAGIVFPAIRAFASILVSPEEQGKVF 368 (463)
T ss_pred HHH-HhhcchhHHHHhHHHhhcccccccchh
Confidence 111 222223333336777778888888776
No 260
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=48.10 E-value=1.2e+02 Score=24.98 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=34.6
Q ss_pred hhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCC
Q 045175 4 FQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGR 59 (177)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~gr 59 (177)
....+|++-+..|...+-++..-+.+..-+.+-++..+.+.++++..|++-.++.|
T Consensus 272 a~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 272 VFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 34556777777777666655533222123445566666778888889988666643
No 261
>COG2119 Predicted membrane protein [Function unknown]
Probab=47.05 E-value=34 Score=23.85 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=27.6
Q ss_pred HHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 39 VAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 39 ~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
..++..++...+.++++|+..|++...+.++..++.
T Consensus 143 ~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 143 MILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 345667888889999999999988887666655544
No 262
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=46.18 E-value=1.5e+02 Score=23.71 Aligned_cols=47 Identities=17% Similarity=-0.036 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHH
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLS 78 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 78 (177)
.......-.+..++.++..|...||..|.+....+.+..-+...+..
T Consensus 40 ~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~ 86 (432)
T PF06963_consen 40 VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASC 86 (432)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHH
Confidence 33445555566678888889999999999987777666554444333
No 263
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.84 E-value=54 Score=26.48 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhheeEecc---cCCchhhhHhhHHHHHHHHHHHH
Q 045175 25 SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH---FGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 25 g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~---~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
+.+............+++..++....+.+.+| +||++.+..+.++..+..++...
T Consensus 274 ~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l 331 (461)
T KOG3098|consen 274 GSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHL 331 (461)
T ss_pred cCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhc
Confidence 34444323444555566677777777777765 78898888877777766655443
No 264
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=44.20 E-value=1.5e+02 Score=24.73 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=41.5
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHHHH
Q 045175 18 PTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSWAF 81 (177)
Q Consensus 18 ~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~ 81 (177)
.++....+..... +.-.............+++++++|. +||=+.+.++..+...+..++....
T Consensus 62 ~ylt~~~~~~~~~-aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a 125 (571)
T KOG1237|consen 62 TYLTLELHASGGG-AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSA 125 (571)
T ss_pred HHHHHHhccchHH-HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666665544 4445555556667888999999997 5887777777777776655554433
No 265
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=43.86 E-value=1.1e+02 Score=21.27 Aligned_cols=43 Identities=9% Similarity=0.035 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHH
Q 045175 36 SLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLS 78 (177)
Q Consensus 36 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 78 (177)
.....+..++++++.-.+..|.+||....+..++.++..++.+
T Consensus 34 ~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 34 LFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 4445666778888888999999999998877777666654443
No 266
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=42.17 E-value=89 Score=19.78 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=24.8
Q ss_pred HHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 22 QMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 22 ~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
...+++++. ......+...++.+++|.++-|..++|=++.+.....+..
T Consensus 30 ~~~~~~e~~----~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~ 78 (116)
T PF12670_consen 30 YFTSLSESI----LPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYF 78 (116)
T ss_pred HHcCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 334555544 2233334455666777776666544444455555444333
No 267
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=38.26 E-value=45 Score=22.45 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=7.9
Q ss_pred EecccCCchhhhH
Q 045175 53 LIDHFGRKKLALS 65 (177)
Q Consensus 53 l~d~~grr~~~~~ 65 (177)
++||.-||..+..
T Consensus 57 Vs~RM~rRm~~~~ 69 (153)
T PF11947_consen 57 VSNRMLRRMAVFV 69 (153)
T ss_pred HHHHHHHHHHHHh
Confidence 5677766655443
No 268
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=37.29 E-value=66 Score=24.11 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhheeEecccCCchhhh
Q 045175 37 LAVAGTNAVGTIIGIYLIDHFGRKKLAL 64 (177)
Q Consensus 37 ~~~~~~~~i~~~~~g~l~d~~grr~~~~ 64 (177)
....+++.++.++.|.++|++|.+..+.
T Consensus 271 ~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 271 CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 4445666677778888888888665544
No 269
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=36.32 E-value=18 Score=28.73 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=15.9
Q ss_pred hhhheeEec-----ccCCchhhhHh
Q 045175 47 TIIGIYLID-----HFGRKKLALSS 66 (177)
Q Consensus 47 ~~~~g~l~d-----~~grr~~~~~~ 66 (177)
-+++.++.| |+||||..++-
T Consensus 80 KllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHhhhHHHHHHhhccccceeee
Confidence 457888899 99999987643
No 270
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=35.60 E-value=1.4e+02 Score=22.88 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhhhhheeEecccCC--chhhhHhhHHHHHHHHHHHHHHHh-cCCCCcchhHHHHHHHHHHHHhhhhcc
Q 045175 34 LLSLAVAGTNAVGTIIGIYLIDHFGR--KKLALSSLTGVIISLVLLSWAFIS-GSSASSSEVYGWIAVIGLALYITFFAP 110 (177)
Q Consensus 34 ~~~~~~~~~~~i~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (177)
.+...+.+..++|+-+...+..|-.. ...+.+...+.++...+....... +..+ .....++..+.+-...+.
T Consensus 286 fiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~ke-----s~~~s~i~F~~~E~cvGl 360 (454)
T KOG4332|consen 286 FIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKE-----SPSESLIGFCLFEACVGL 360 (454)
T ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcC-----CchHHHHHHHHHHHHHhh
Confidence 44455566677777777665554332 334555555555444433333221 1111 122335556666666666
Q ss_pred ccccccceeeccccccccccchh
Q 045175 111 GMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 111 ~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+..+. -+=....|++.|++.+
T Consensus 361 fwPSim-kmRsqyIPEearstim 382 (454)
T KOG4332|consen 361 FWPSIM-KMRSQYIPEEARSTIM 382 (454)
T ss_pred cchHHH-HHHHhhCCHHHHhhhh
Confidence 666555 5667788999999887
No 271
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=34.35 E-value=91 Score=19.60 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHH
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTG 69 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~ 69 (177)
........+...++.++++++..|+..+-+.=+++..+
T Consensus 56 fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i 93 (107)
T PF02694_consen 56 FGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAI 93 (107)
T ss_pred chhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHH
Confidence 55566666666778888888888887655544444443
No 272
>PF12173 BacteriocIIc_cy: Bacteriocin class IIc cyclic gassericin A-like; InterPro: IPR020970 This class of bacteriocins was previously described as class V. The members include gassericin A, acidocin B and butyrovibriocin AR10, all of which are hydrophobic cyclical structures []. The N- and C-termini are covalently linked, and the circular molecule is resistant to several proteases and peptidases []. The immunity protein that protects Lactobacillus gasseri from the toxic effects of its bacteriocin, gassericin A, has been identified. It is found to be a small positively-charged hydrophobic peptide of 53 amino acids containing a putative transmembrane segment [] - a structure unlike that of the more common immunity proteins as found in PF08951 from PFAM.
Probab=32.01 E-value=47 Score=19.61 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=20.4
Q ss_pred HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchh
Q 045175 23 MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKL 62 (177)
Q Consensus 23 ~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~ 62 (177)
++|++.-+ ...+.....+..++...=.-|++||+|-|..
T Consensus 8 n~~lnki~-~~~i~a~LvV~ll~~~~NIY~Ia~k~GI~LA 46 (91)
T PF12173_consen 8 NFNLNKIE-SFCIWAVLVVALLITTANIYWIADKFGIHLA 46 (91)
T ss_pred ccCHHHHH-HHHHHHHHHHHHHHccCceEEEecccceeec
Confidence 34444443 4444443334333333444689999997643
No 273
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=30.21 E-value=1.4e+02 Score=23.79 Aligned_cols=28 Identities=11% Similarity=-0.256 Sum_probs=15.0
Q ss_pred hhhhccccccccceeeccccccccccchh
Q 045175 105 ITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 105 ~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+...+..+.... ..+.|-.|++.|-.++
T Consensus 346 GLlGGa~YVNtF-~~I~~~~~~~~REFsl 373 (402)
T PF02487_consen 346 GLLGGASYVNTF-YRISEEVPPEDREFSL 373 (402)
T ss_pred HHhhhHHHHHHH-HHHHhcCCHHHHHHHH
Confidence 333333344444 4556667777776554
No 274
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=29.92 E-value=76 Score=21.19 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=27.1
Q ss_pred CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhH
Q 045175 25 SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALS 65 (177)
Q Consensus 25 g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~ 65 (177)
|+.+.. ......+.++.-+++-+++.+++|++++-..+.+
T Consensus 68 Gi~Eks-lL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~ 107 (150)
T COG3086 68 GIEEKS-LLKSALLVYIFPLVGLFLGAILAQYLFFSELIVI 107 (150)
T ss_pred ccCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 455554 4555566667677788888888899887666543
No 275
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.91 E-value=17 Score=30.97 Aligned_cols=62 Identities=18% Similarity=0.044 Sum_probs=50.6
Q ss_pred hHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHH
Q 045175 17 NPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 17 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
..++-+.+++++++ ..++....-++..+...+..+..-|.-|-+++-++.++++++.++.++
T Consensus 120 IttiErRF~i~Ss~-sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~al 181 (735)
T KOG3626|consen 120 ITTIERRFKISSSQ-SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFAL 181 (735)
T ss_pred hhhhhhhcCCCCCc-ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhC
Confidence 44555778998888 888888888888888889999999988888888999999888877664
No 276
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=29.50 E-value=1.2e+02 Score=18.58 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=24.1
Q ss_pred HHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHH
Q 045175 40 AGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVL 76 (177)
Q Consensus 40 ~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~ 76 (177)
.+...+..+.+|.+.|| +|.|..+....+...+..++
T Consensus 24 ~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~ 61 (99)
T PF08551_consen 24 LLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLL 61 (99)
T ss_pred HHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHH
Confidence 34455666677888887 79888876655555544433
No 277
>PRK02237 hypothetical protein; Provisional
Probab=27.53 E-value=1.5e+02 Score=18.75 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhh
Q 045175 32 ALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSL 67 (177)
Q Consensus 32 ~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~ 67 (177)
........+...++.++++++..|+..+-+-=+++.
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa 93 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGA 93 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhH
Confidence 445555556666677777777777765444333333
No 278
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.46 E-value=2.4e+02 Score=22.81 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 34 LLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 34 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
..-...+++.++|.+++|.+.|-.|..-.+++-.++..+-.
T Consensus 200 ialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~ 240 (464)
T KOG3764|consen 200 IALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDG 240 (464)
T ss_pred HHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHH
Confidence 33344566678999999999999998877776444443333
No 279
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=24.65 E-value=3.1e+02 Score=20.61 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=12.9
Q ss_pred eeEEe-ecCCCCCHHHHHHHHhh
Q 045175 137 VILFV-PETQGLTFLEVEHMWKE 158 (177)
Q Consensus 137 ~~~~~-pet~~~~~~~~~~~~~~ 158 (177)
+.+.. +|...+..|+.|+..++
T Consensus 266 i~fiip~~~~ar~Ved~d~Irde 288 (314)
T COG3965 266 IHFIIPRESDARNVEDWDDIRDE 288 (314)
T ss_pred EEEEeCCccCCccchhHHHHHHH
Confidence 45555 55666777766655444
No 280
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=23.11 E-value=2.3e+02 Score=22.47 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=35.2
Q ss_pred hhhhchhHHHHhhHHHHHHcCCCCch--HHHHHHHHHHHHHHhhhhhheeEecccCCchhhhH
Q 045175 5 QQFTGINTVMYYNPTIVQMASFQSNQ--LALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALS 65 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~ 65 (177)
...+|++-...|...+-++.. +... .-+..-++..+.+.++.++.|.+.-++.|..-++.
T Consensus 245 l~scg~~QV~nY~Q~LW~~~~-~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll 306 (433)
T KOG3810|consen 245 LASCGYYQVTNYTQILWKEVA-PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLL 306 (433)
T ss_pred HhhchhHHHHHHHHHHHHhhC-CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHH
Confidence 344566666666655545543 2221 11233444556677888999999888877644443
No 281
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=22.96 E-value=2.7e+02 Score=19.38 Aligned_cols=39 Identities=8% Similarity=-0.046 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHH
Q 045175 36 SLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISL 74 (177)
Q Consensus 36 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 74 (177)
.....+..+++.++.-.+..|.+|+-...+..++.++..
T Consensus 36 ~~~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~~ 74 (189)
T TIGR02185 36 LFSPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLF 74 (189)
T ss_pred HHHHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHHH
Confidence 344566678888888899999999988877666655544
No 282
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=22.27 E-value=2.7e+02 Score=19.11 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 42 TNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 42 ~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
...+++..+....+|..+|.-++.+.+..++..........
T Consensus 109 ~~l~~~~~~~~~~~~~~~R~~~i~ag~~v~l~~~~~~l~~~ 149 (194)
T PF07698_consen 109 YSLVSGIVAIFSVRRIRSRSDIIKAGLLVGLVNALMILALG 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888887776666655555544444433
No 283
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=21.73 E-value=31 Score=25.83 Aligned_cols=13 Identities=15% Similarity=0.531 Sum_probs=0.0
Q ss_pred eeeeeEEeecCCC
Q 045175 134 VVFVILFVPETQG 146 (177)
Q Consensus 134 ~~~~~~~~pet~~ 146 (177)
.+++|+++.++++
T Consensus 178 aiLIWlY~H~~~~ 190 (381)
T PF05297_consen 178 AILIWLYVHDQRH 190 (381)
T ss_dssp -------------
T ss_pred HHHHHHHhcCCCC
Confidence 4555666777664
No 284
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=21.46 E-value=35 Score=20.81 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=7.6
Q ss_pred HhhhhhheeEecccCCc
Q 045175 44 AVGTIIGIYLIDHFGRK 60 (177)
Q Consensus 44 ~i~~~~~g~l~d~~grr 60 (177)
.+.+.+.|.+.||.+||
T Consensus 89 l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 89 LVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 34455555555655544
No 285
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=21.38 E-value=31 Score=16.75 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=0.0
Q ss_pred ecccCCchhh
Q 045175 54 IDHFGRKKLA 63 (177)
Q Consensus 54 ~d~~grr~~~ 63 (177)
+||+||-...
T Consensus 3 sd~FGRd~~~ 12 (36)
T PF08080_consen 3 SDRFGRDLSY 12 (36)
T ss_dssp ----------
T ss_pred cchhcchhhH
Confidence 6888885543
No 286
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=20.74 E-value=99 Score=21.58 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=14.5
Q ss_pred HHHHHhhhhhheeEecccCC
Q 045175 40 AGTNAVGTIIGIYLIDHFGR 59 (177)
Q Consensus 40 ~~~~~i~~~~~g~l~d~~gr 59 (177)
-++-.+++++.|++.||..+
T Consensus 92 L~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 92 LIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34446777888888888775
No 287
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.26 E-value=2.3e+02 Score=17.59 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=12.4
Q ss_pred HhhhhhheeEecccCCchhhhHhhH
Q 045175 44 AVGTIIGIYLIDHFGRKKLALSSLT 68 (177)
Q Consensus 44 ~i~~~~~g~l~d~~grr~~~~~~~~ 68 (177)
++|..++-|+=++++-++.+...++
T Consensus 57 l~G~~lG~WLD~~~~t~~~~tl~~l 81 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPFSWTLTML 81 (100)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 3444444444445776655444333
Done!