Query 045175
Match_columns 177
No_of_seqs 141 out of 1387
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 9.4E-21 3.2E-25 147.3 5.5 150 3-160 286-482 (491)
2 2gfp_A EMRD, multidrug resista 99.2 4E-12 1.4E-16 95.5 4.2 113 8-133 14-126 (375)
3 4gc0_A D-xylose-proton symport 99.2 7.7E-13 2.6E-17 102.7 -1.6 100 33-133 58-164 (491)
4 3o7q_A L-fucose-proton symport 99.1 7.1E-11 2.4E-15 90.2 5.2 113 11-133 43-155 (438)
5 1pw4_A Glycerol-3-phosphate tr 98.9 1.5E-10 5E-15 88.7 1.2 113 11-133 45-157 (451)
6 2xut_A Proton/peptide symporte 98.9 2.6E-09 9E-14 83.5 6.5 113 7-131 25-145 (524)
7 4aps_A DI-OR tripeptide H+ sym 98.9 1E-09 3.5E-14 85.1 3.8 111 7-130 26-143 (491)
8 3o7q_A L-fucose-proton symport 98.6 3.5E-08 1.2E-12 75.2 5.2 112 7-133 271-384 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.5 3.3E-08 1.1E-12 75.6 1.8 118 5-133 263-384 (451)
10 4aps_A DI-OR tripeptide H+ sym 98.2 6.1E-08 2.1E-12 75.1 -2.0 117 13-133 302-424 (491)
11 2cfq_A Lactose permease; trans 98.1 4.8E-07 1.6E-11 69.0 1.0 89 33-133 262-350 (417)
12 2cfq_A Lactose permease; trans 98.1 1E-06 3.4E-11 67.2 2.6 64 8-72 21-85 (417)
13 2gfp_A EMRD, multidrug resista 97.4 3.3E-06 1.1E-10 63.1 -4.6 116 6-133 211-328 (375)
14 2xut_A Proton/peptide symporte 93.9 0.0089 3.1E-07 46.4 -0.4 21 113-133 423-443 (524)
15 1cmk_I CAMP-dependent protein 40.3 7.3 0.00025 16.9 0.3 10 54-63 9-18 (26)
16 2g9p_A Antimicrobial peptide l 35.2 2.4 8.1E-05 17.7 -1.6 13 50-62 3-15 (26)
17 3arc_J Photosystem II reaction 31.5 48 0.0017 15.9 3.8 18 54-71 2-19 (40)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.81 E-value=9.4e-21 Score=147.28 Aligned_cols=150 Identities=35% Similarity=0.640 Sum_probs=117.1
Q ss_pred hhhhhhchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHH
Q 045175 3 AFQQFTGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFI 82 (177)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 82 (177)
.++++.+.+.+.+|.|.+.+..+.+... .........+...++.++++++.||+|||+.++.+.....++.+.++....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 4677888999999999999888887776 777777888889999999999999999999999988888887766655443
Q ss_pred hcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh-----------------------------
Q 045175 83 SGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG----------------------------- 133 (177)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~----------------------------- 133 (177)
.... ....++...++...++.++++..|.+.+|++|++.|+++.
T Consensus 365 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~ 437 (491)
T 4gc0_A 365 TQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA 437 (491)
T ss_dssp TTCC-------HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH
T ss_pred cccc-------hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221 3334444455556666777888889999999999999886
Q ss_pred ------------------eeeeeEEeecCCCCCHHHHHHHHhhhc
Q 045175 134 ------------------VVFVILFVPETQGLTFLEVEHMWKERA 160 (177)
Q Consensus 134 ------------------~~~~~~~~pet~~~~~~~~~~~~~~~~ 160 (177)
.++.++++||||||++||+|+.++++.
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 333457899999999999998887654
No 2
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.24 E-value=4e-12 Score=95.49 Aligned_cols=113 Identities=10% Similarity=-0.005 Sum_probs=83.2
Q ss_pred hchhHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 045175 8 TGINTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSA 87 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (177)
.+........|.+.+++|.+..+ ..+......++..++.++.|+++||+|||+.++.+.++..++.+......
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------ 86 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGA-VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS------ 86 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHH-HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHhhhhHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc------
Confidence 34455556667777888999888 88888889999999999999999999999999999998888887665532
Q ss_pred CcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 88 SSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....++...+.+.+.+ ...+...++..|.+|+++|++..
T Consensus 87 -----~~~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 126 (375)
T 2gfp_A 87 -----SLTVLIAASAMQGMGTG-VGGVMARTLPRDLYERTQLRHAN 126 (375)
T ss_dssp -----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHH
T ss_pred -----cHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHH
Confidence 12233333333333333 33444448999999999999776
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.20 E-value=7.7e-13 Score=102.66 Aligned_cols=100 Identities=18% Similarity=0.033 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCc-------chhHHHHHHHHHHHHh
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASS-------SEVYGWIAVIGLALYI 105 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 105 (177)
.++.+...++.++|++++|+++||+|||+.++.+.++..++.++.+........... ........++.+.+.+
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 456666788889999999999999999999999999998888776642211000000 0111333444445545
Q ss_pred hhhccccccccceeeccccccccccchh
Q 045175 106 TFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 106 ~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+.+......+ ++++|..|++.|+...
T Consensus 138 ~g~G~~~~~~~-~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 138 IGVGLASMLSP-MYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHH-HHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHH-HHHHhhCCHHhhhhhH
Confidence 44444444444 9999999999999765
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.10 E-value=7.1e-11 Score=90.21 Aligned_cols=113 Identities=14% Similarity=-0.075 Sum_probs=84.6
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.......|.+.+++|.+..+ ..+......++..++.+++|+++||+|||+.++.+.++.+++.++......
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------- 113 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQ-AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HhHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--------
Confidence 45566678888999999988 888889999999999999999999999999999999998888876632211
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.......++...+.+.+.+...... .++..|.+|++.|+...
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~ 155 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRL 155 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHH
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHH
Confidence 0113334444445454444443344 48999999999999865
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.94 E-value=1.5e-10 Score=88.70 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=80.9
Q ss_pred hHHHHhhHHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcc
Q 045175 11 NTVMYYNPTIVQMASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSS 90 (177)
Q Consensus 11 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (177)
.....+.|.+.+++ .+..+ ..+......++..++.+++|+++||+|||++++.+.++.+++.++.........+
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---- 118 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGD-LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS---- 118 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS----
T ss_pred HHHHHHHHHHHHHh-ccHhH-HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc----
Confidence 33455677777777 88887 8888888999999999999999999999999999999888888766551110000
Q ss_pred hhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 91 EVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
....++...+.+.+.+... +...+++.|.+|++.|+...
T Consensus 119 ---~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~ 157 (451)
T 1pw4_A 119 ---IAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIV 157 (451)
T ss_dssp ---SSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHH
Confidence 1223344444444444333 34448999999999999876
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.88 E-value=2.6e-09 Score=83.51 Aligned_cols=113 Identities=10% Similarity=-0.041 Sum_probs=80.1
Q ss_pred hhchhHHHHhhHHHH-HHcC------CCCchHHHHHHHHHHHHHHhhhhhheeEeccc-CCchhhhHhhHHHHHHHHHHH
Q 045175 7 FTGINTVMYYNPTIV-QMAS------FQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF-GRKKLALSSLTGVIISLVLLS 78 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~ 78 (177)
..+.+....+.+.++ +++| .+..+ ..+......++..++.+++|+++||+ |||+.++.+.++.+++.++..
T Consensus 25 ~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (524)
T 2xut_A 25 RFSFYGMRNILTPFLMTALLLSIPEELRGAV-AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA 103 (524)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT-HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 344455666677766 5678 88888 88888888999999999999999999 999999988888877776554
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccc
Q 045175 79 WAFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGI 131 (177)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~ 131 (177)
... . .....++...+.+.+.+.. .+...++..|.+|++.|+.
T Consensus 104 ~~~----~------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~ 145 (524)
T 2xut_A 104 IFE----H------SVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSL 145 (524)
T ss_dssp HTS----S------CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTH
T ss_pred Hhc----c------cHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHH
Confidence 421 0 1233344444444444433 3444489999999999863
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.87 E-value=1e-09 Score=85.11 Aligned_cols=111 Identities=13% Similarity=0.029 Sum_probs=79.0
Q ss_pred hhchhHHHHhhHHHH-HH-----cCCCCchHHHHHHHHHHHHHHhhhhhheeEecc-cCCchhhhHhhHHHHHHHHHHHH
Q 045175 7 FTGINTVMYYNPTIV-QM-----ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDH-FGRKKLALSSLTGVIISLVLLSW 79 (177)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~-----~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~ 79 (177)
..+.+....+.+.+. +. +|.+..+ ..+......++..++.+++|+++|| +|||++++.+.++..++.++...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~ 104 (491)
T 4aps_A 26 RFSYYGMRAILLYYMWFLISTGDLHITRAT-AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhccchhhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666 44 8998888 8888888999999999999999999 89999999998888887765543
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeecccccccccc
Q 045175 80 AFISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRG 130 (177)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~ 130 (177)
. ++ ....++...+.+.+.+.. .+...++..|.+|++.|+
T Consensus 105 ~-----~~------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~ 143 (491)
T 4aps_A 105 P-----FG------ASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRR 143 (491)
T ss_dssp C-----CS------TTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTH
T ss_pred h-----hh------HHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCccccc
Confidence 1 11 223344444444444433 344448999999998843
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.62 E-value=3.5e-08 Score=75.21 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=76.9
Q ss_pred hhchhHHHHhhHHH-HHHc-CCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhc
Q 045175 7 FTGINTVMYYNPTI-VQMA-SFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISG 84 (177)
Q Consensus 7 ~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 84 (177)
.........|.|.+ .++. |.+..+ .........++..++.++.++++||+|||+.+..+.++..++.++.....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--- 346 (438)
T 3o7q_A 271 VGAQTACWSYLIRYAVEEIPGMTAGF-AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--- 346 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhhhccCCcchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC---
Confidence 33445666788888 7665 888887 77888888899999999999999999999999888877776665443311
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 85 SSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.....+...+.+.+.+.. .+..+.+..|.+|++ |+.+.
T Consensus 347 ---------~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 384 (438)
T 3o7q_A 347 ---------GHVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGS 384 (438)
T ss_dssp ---------HHHHHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHH
T ss_pred ---------CcHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchh
Confidence 112222233334343333 345558888999977 66554
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.48 E-value=3.3e-08 Score=75.60 Aligned_cols=118 Identities=9% Similarity=0.067 Sum_probs=77.7
Q ss_pred hhhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEeccc--CCchhhhHhhHHHH-HHHHHHHHH
Q 045175 5 QQFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHF--GRKKLALSSLTGVI-ISLVLLSWA 80 (177)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~ 80 (177)
....+.+....+.|.+.++ .|.+..+ .........++..++.++.+++.||+ |||+.+..+..+.. ++.+++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 340 (451)
T 1pw4_A 263 FVYLLRYGILDWSPTYLKEVKHFALDK-SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM- 340 (451)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-
Confidence 3444556677888888866 7888877 77788888899999999999999999 99998877666554 33322111
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 81 FISGSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.... ......+...+.+.+.+. ..+..+.+..|.+|++.|+++.
T Consensus 341 ---~~~~-----~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 384 (451)
T 1pw4_A 341 ---NPAG-----NPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAA 384 (451)
T ss_dssp ---CCTT-----CHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHH
T ss_pred ---hccc-----CHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHH
Confidence 1110 122233333333333332 3334448999999999999876
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.24 E-value=6.1e-08 Score=75.13 Aligned_cols=117 Identities=12% Similarity=-0.053 Sum_probs=64.8
Q ss_pred HHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhh-----HhhHHHHHHHHHHHHHHHhcCC
Q 045175 13 VMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLAL-----SSLTGVIISLVLLSWAFISGSS 86 (177)
Q Consensus 13 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 86 (177)
...+.|.+.++ .+.+..+ .........+...++.++.+++.||+|||+... .+..+.+++.+...........
T Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 302 GSVVLATFAAERVDSSWFP-VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGTHHHHHHHHSCCCSSSC-SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred ccHHHHHHHHHHhccCccC-HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445556644 4555333 445566667777888999999999999987655 5555555554443332221111
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 87 ASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
+. ........+...+.+.+.+. ..+..+.+..|.+|++.|+++.
T Consensus 381 ~~--~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 381 SG--KVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp CT--TCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSST
T ss_pred CC--CccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHH
Confidence 10 00122233333333333332 2344458999999999999887
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.12 E-value=4.8e-07 Score=68.98 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcccc
Q 045175 33 LLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVIISLVLLSWAFISGSSASSSEVYGWIAVIGLALYITFFAPGM 112 (177)
Q Consensus 33 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (177)
.....+..++..++.++.++++||+|||+.+..+..+.++..+.... ..+ .....+...+.+.... ..
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~l~~~~~~-~~ 329 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----ATS------ALEVVILKTLHMFEVP-FL 329 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CCS------HHHHHHHTTHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hcc------HHHHHHHHHHHHHHHH-HH
Confidence 44555566677889999999999999999988777666655433321 111 1222222222222222 12
Q ss_pred ccccceeeccccccccccchh
Q 045175 113 GPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+..+.+.+|.+|++.|+++.
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~ 350 (417)
T 2cfq_A 330 LVGCFKYITSQFEVRFSATIY 350 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHH
Confidence 223358999999999998754
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.12 E-value=1e-06 Score=67.23 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=51.4
Q ss_pred hchhHHHHhhHHHHH-HcCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHHHHH
Q 045175 8 TGINTVMYYNPTIVQ-MASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTGVII 72 (177)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~ 72 (177)
.+......+.|.+.+ ++|.+..+ .........++..++.+++|+++||+|||++++.+..+..+
T Consensus 21 ~~~~~~~~~~~~~l~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDINHISKSD-TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHTTTHHHHHHTTTCCCTTT-SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344444567788774 47998887 77888888999999999999999999999998877766543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.40 E-value=3.3e-06 Score=63.10 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=64.9
Q ss_pred hhhchhHHHHhhHHHHHH-cCCCCchHHHHHHHHHHHHHHhhhhhheeEecccCCchhhhHhhHH-HHHHHHHHHHHHHh
Q 045175 6 QFTGINTVMYYNPTIVQM-ASFQSNQLALLLSLAVAGTNAVGTIIGIYLIDHFGRKKLALSSLTG-VIISLVLLSWAFIS 83 (177)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~ 83 (177)
...+......+.|.+.++ .|.+..+ .........++..++.++.+++.||+|||. ..+... ...+.........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~- 286 (375)
T 2gfp_A 211 GLAGIAAFEACSGVLMGAVLGLSSMT-VSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF- 286 (375)
T ss_dssp HHHHHHHHHHHCSCSSHHHHHHHHHH-HHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh-
Confidence 334455566667777644 6777766 677777788888999999999999988732 222222 1111111011000
Q ss_pred cCCCCcchhHHHHHHHHHHHHhhhhccccccccceeeccccccccccchh
Q 045175 84 GSSASSSEVYGWIAVIGLALYITFFAPGMGPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~ 133 (177)
. ........+...+.+.+.+.. .+..+.+..|.+| +.|+++.
T Consensus 287 ~------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~ 328 (375)
T 2gfp_A 287 G------VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAG 328 (375)
T ss_dssp H------HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHH
T ss_pred c------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHH
Confidence 0 001222223333434333333 3444588999999 7888776
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=93.89 E-value=0.0089 Score=46.43 Aligned_cols=21 Identities=5% Similarity=-0.050 Sum_probs=17.2
Q ss_pred ccccceeeccccccccccchh
Q 045175 113 GPVPWTVNSEVYREQYRGICG 133 (177)
Q Consensus 113 ~~~~~~~~~e~~p~~~R~~~~ 133 (177)
.+..+.+..|..|++.|+++.
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~ 443 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIM 443 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTH
T ss_pred HHHHHHHHHHhCcHHHHhHHH
Confidence 444558999999999999887
No 15
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=40.29 E-value=7.3 Score=16.90 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=7.6
Q ss_pred ecccCCchhh
Q 045175 54 IDHFGRKKLA 63 (177)
Q Consensus 54 ~d~~grr~~~ 63 (177)
+||.|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 6888998764
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=35.20 E-value=2.4 Score=17.73 Aligned_cols=13 Identities=46% Similarity=0.544 Sum_probs=8.5
Q ss_pred heeEecccCCchh
Q 045175 50 GIYLIDHFGRKKL 62 (177)
Q Consensus 50 ~g~l~d~~grr~~ 62 (177)
.|.+..++|||-+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 3556678888743
No 17
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=31.49 E-value=48 Score=15.89 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=11.6
Q ss_pred ecccCCchhhhHhhHHHH
Q 045175 54 IDHFGRKKLALSSLTGVI 71 (177)
Q Consensus 54 ~d~~grr~~~~~~~~~~~ 71 (177)
.|..||-++.+++.+...
T Consensus 2 m~~tGRiPLWlvgtv~G~ 19 (40)
T 3arc_J 2 MSEGGRIPLWIVATVAGM 19 (40)
T ss_dssp -CCTTSSCHHHHHHHHHH
T ss_pred CCCcCcccEEeeeeehhh
Confidence 355688888877666543
Done!