BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045177
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 12/221 (5%)
Query: 5 NRLTGPIPKYLANIS-TLVNLTVQYNQFX--XXXXXXXXXXXXXXKLHLSSNNFTGELPK 61
N +G +P+ L N+S +L+ L + N F +L+L +N FTG++P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 62 TFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLV 121
T + + + + N +G IPS + + +KL L + + L G IP + ++ L+
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 122 CMVFLFLRISDLNGPEATFPQLGNKKMTNLI-LRNCNITGELPPYLGKMTTLKVLDLSFN 180
L +DL G + L N N I L N +TGE+P ++G++ L +L LS N
Sbjct: 473 ------LDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKI 221
SG+IP+ D + ++ NL G IP M ++ KI
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 122/262 (46%), Gaps = 42/262 (16%)
Query: 1 SLLANRLTGPIPKYLAN-ISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGEL 59
SL N+ TG IP +L+ TL L + N F L LSSNNF+GEL
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 60 P-KTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTK-------------------------- 92
P T K+ +K + N+F+G++P + N +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 93 -LEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGN-KKMT 149
L++L++Q +G G IP + + + +V L L + L+G T P LG+ K+
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSE------LVSLHLSFNYLSG---TIPSSLGSLSKLR 445
Query: 150 NLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGA 209
+L L + GE+P L + TL+ L L FN L+G IPS + +++I + N LTG
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 210 IPPWM--LEKGDKIDLSYNNFT 229
IP W+ LE + LS N+F+
Sbjct: 506 IPKWIGRLENLAILKLSNNSFS 527
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 112/269 (41%), Gaps = 41/269 (15%)
Query: 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELPK 61
L N L G IP+ L + TL L + +N + LS+N TGE+PK
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 62 TFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLE---KFN 118
+L N+ ++ +N F+G IP+ + + L L + + G IP+ +F N
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 119 GLVCMVFLFLRISDLN------GPEATFPQLGNKKMTNLILRN-CNIT------------ 159
+ +++++ + G F + ++++ L RN CNIT
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628
Query: 160 -----------------GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFT 202
G +P +G M L +L+L N +SG IP DL ++ + +
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688
Query: 203 GNLLTGAIPPWM--LEKGDKIDLSYNNFT 229
N L G IP M L +IDLS NN +
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 92/236 (38%), Gaps = 55/236 (23%)
Query: 48 LHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPI 107
L +SSNNF+ +P + ++ I N+ +G I T+L+ L I + VGPI
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 108 PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLG 167
P L + +L L + G F +T L L + G +PP+ G
Sbjct: 264 PPL--------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 168 -------------------------KMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFT 202
KM LKVLDLSFN+ SG +P + +L +
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--------S 367
Query: 203 GNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAESSCQKRSVNLFASFSKGNNSTGIV 258
+LLT +DLS NNF+ + CQ L + + N TG +
Sbjct: 368 ASLLT-------------LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 33/235 (14%)
Query: 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELP 60
SL NRLTG IPK++ + L L + N F L L++N F G +P
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 61 KTFAKLTNMKDFRIGDNQFTGQIPSFIQN--------------------WTKLEKLFIQ- 99
K + +I N G+ +I+N +L +L +
Sbjct: 556 AAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 100 PSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNG--PEATFPQLGNKKMTNLI-LRNC 156
P + + G S F+ M+FL + + L+G P+ ++G+ ++ L +
Sbjct: 612 PCNITSRVYGGHTS-PTFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHN 666
Query: 157 NITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211
+I+G +P +G + L +LDLS NKL G IP L + I + N L+G IP
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 5 NRLTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELPKTFA 64
N L+G IPK + ++ L L + +N L LSSN G +P+ +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 65 KLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVG-PIP 108
LT + + + +N +G IP Q T F+ GL G P+P
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 113 SLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNK---KMTNLILRNCNITGELPPYLGKM 169
S+ F + L L + L+GP T LG+ K N+ + G++ L K+
Sbjct: 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KL 150
Query: 170 TTLKVLDLSFNKLSGHIPSNF---DDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYN 226
+L+VLDLS N +SG + D E+ ++ +GN ++G + + +D+S N
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210
Query: 227 NFTDG 231
NF+ G
Sbjct: 211 NFSTG 215
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 48 LHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPI 107
L +S N +G +PK + + +G N +G IP + + L L + + L G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 108 PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLG 144
P + + L + + L ++L+GP P++G
Sbjct: 697 P------QAMSALTMLTEIDLSNNNLSGP---IPEMG 724
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 12/221 (5%)
Query: 5 NRLTGPIPKYLANIS-TLVNLTVQYNQFX--XXXXXXXXXXXXXXKLHLSSNNFTGELPK 61
N +G +P+ L N+S +L+ L + N F +L+L +N FTG++P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 62 TFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLV 121
T + + + + N +G IPS + + +KL L + + L G IP + ++ L+
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 122 CMVFLFLRISDLNGPEATFPQLGNKKMTNLI-LRNCNITGELPPYLGKMTTLKVLDLSFN 180
L +DL G + L N N I L N +TGE+P ++G++ L +L LS N
Sbjct: 470 ------LDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKI 221
SG+IP+ D + ++ NL G IP M ++ KI
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 122/262 (46%), Gaps = 42/262 (16%)
Query: 1 SLLANRLTGPIPKYLAN-ISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGEL 59
SL N+ TG IP +L+ TL L + N F L LSSNNF+GEL
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 60 P-KTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTK-------------------------- 92
P T K+ +K + N+F+G++P + N +
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 93 -LEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGN-KKMT 149
L++L++Q +G G IP + + + +V L L + L+G T P LG+ K+
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSE------LVSLHLSFNYLSG---TIPSSLGSLSKLR 442
Query: 150 NLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGA 209
+L L + GE+P L + TL+ L L FN L+G IPS + +++I + N LTG
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 210 IPPWM--LEKGDKIDLSYNNFT 229
IP W+ LE + LS N+F+
Sbjct: 503 IPKWIGRLENLAILKLSNNSFS 524
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 112/269 (41%), Gaps = 41/269 (15%)
Query: 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELPK 61
L N L G IP+ L + TL L + +N + LS+N TGE+PK
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 62 TFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLE---KFN 118
+L N+ ++ +N F+G IP+ + + L L + + G IP+ +F N
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 119 GLVCMVFLFLRISDLN------GPEATFPQLGNKKMTNLILRN-CNIT------------ 159
+ +++++ + G F + ++++ L RN CNIT
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 160 -----------------GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFT 202
G +P +G M L +L+L N +SG IP DL ++ + +
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 203 GNLLTGAIPPWM--LEKGDKIDLSYNNFT 229
N L G IP M L +IDLS NN +
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 92/236 (38%), Gaps = 55/236 (23%)
Query: 48 LHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPI 107
L +SSNNF+ +P + ++ I N+ +G I T+L+ L I + VGPI
Sbjct: 202 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 108 PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLG 167
P L + +L L + G F +T L L + G +PP+ G
Sbjct: 261 PPL--------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 168 -------------------------KMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFT 202
KM LKVLDLSFN+ SG +P + +L +
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--------S 364
Query: 203 GNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAESSCQKRSVNLFASFSKGNNSTGIV 258
+LLT +DLS NNF+ + CQ L + + N TG +
Sbjct: 365 ASLLT-------------LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 33/235 (14%)
Query: 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELP 60
SL NRLTG IPK++ + L L + N F L L++N F G +P
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 61 KTFAKLTNMKDFRIGDNQFTGQIPSFIQN--------------------WTKLEKLFIQ- 99
K + +I N G+ +I+N +L +L +
Sbjct: 553 AAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 100 PSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNG--PEATFPQLGNKKMTNLI-LRNC 156
P + + G S F+ M+FL + + L+G P+ ++G+ ++ L +
Sbjct: 609 PCNITSRVYGGHTS-PTFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHN 663
Query: 157 NITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211
+I+G +P +G + L +LDLS NKL G IP L + I + N L+G IP
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Query: 5 NRLTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELPKTFA 64
N L+G IPK + ++ L L + +N L LSSN G +P+ +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 65 KLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVG-PIP 108
LT + + + +N +G IP Q T F+ GL G P+P
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 743
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 113 SLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNK---KMTNLILRNCNITGELPPYLGKM 169
S+ F + L L + L+GP T LG+ K N+ + G++ L K+
Sbjct: 89 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KL 147
Query: 170 TTLKVLDLSFNKLSGHIPSNF---DDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYN 226
+L+VLDLS N +SG + D E+ ++ +GN ++G + + +D+S N
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 207
Query: 227 NFTDG 231
NF+ G
Sbjct: 208 NFSTG 212
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 48 LHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPI 107
L +S N +G +PK + + +G N +G IP + + L L + + L G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 108 PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLG 144
P + + L + + L ++L+GP P++G
Sbjct: 694 P------QAMSALTMLTEIDLSNNNLSGP---IPEMG 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 106 PIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNK--KMTNLILRNCNITGELP 163
PIPS + +L N FL I +N P K ++ L + + N++G +P
Sbjct: 67 PIPSSLANLPYLN--------FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118
Query: 164 PYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211
+L ++ TL LD S+N LSG +P + L + I F GN ++GAIP
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 14/184 (7%)
Query: 7 LTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELPKTFAKL 66
++G IP +L+ I TLV L YN + N +G +P ++
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 67 TNM-KDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPS-GLVGPIPSGIFSLEKFNGLVCMV 124
+ + I N+ TG+IP N L F+ S ++ S +F +K + +
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFAN---LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 125 FLFLRISDLNGPEATFPQLG-NKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLS 183
N ++G +K + L LRN I G LP L ++ L L++SFN L
Sbjct: 230 --------KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 184 GHIP 187
G IP
Sbjct: 282 GEIP 285
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 53 NNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIF 112
NN G +P AKLT + I +G IP F+ L L + L G +P I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 113 SLEKFNGLVCMVFLFLRISD-LNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTT 171
SL LV + F RIS + +F +L T++ + +TG++PP +
Sbjct: 147 SLPN---LVGITFDGNRISGAIPDSYGSFSKL----FTSMTISRNRLTGKIPPTFANL-N 198
Query: 172 LKVLDLSFNKLSG 184
L +DLS N L G
Sbjct: 199 LAFVDLSRNMLEG 211
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 59 LPKTFAKLTNMKDFRIGD-NQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKF 117
+P + A L + IG N G IP I T+L L+I + + G IP L +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---FLSQI 124
Query: 118 NGLVCMVFLFLRISDLNGPE-ATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTL-KVL 175
LV + F + +S P ++ P L + I+G +P G + L +
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNL-----VGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 176 DLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTG 208
+S N+L+G IP F +L + ++ + N+L G
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 157 NITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLE 216
N+ G +PP + K+T L L ++ +SG IP + + + F+ N L+G +PP +
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 217 KGDKIDLSYNNFTDGSAESSCQKRSVNLFASFSK 250
+ + +++ DG+ S S + SFSK
Sbjct: 148 LPNLVGITF----DGNRISGAIPDS---YGSFSK 174
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
Query: 5 NRLTGPIPKYLANISTLVNLTVQYNQFXXXXXXXXXXXXXXXKLHLSSNNFTGELPKT-F 63
NRLTG IP AN++ L + + N K+HL+ N+ +L K
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 64 AKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFN 118
+K N D R +N+ G +P + L L + + L G IP G +L++F+
Sbjct: 243 SKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 179 FNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYN 226
N L G IP L ++ Y+Y T ++GAIP ++ ++ +D SYN
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 67 TNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFL 126
TN + + DNQ T P + L++L++ S +G +P G+F + L + L
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLG-SNQLGALPVGVF-----DSLTQLTVL 93
Query: 127 FLRISDLNG-PEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGH 185
L + L P A F +L + K + CN ELP + ++T L L L N+L
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKE---LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI 150
Query: 186 IPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGD 219
FD L + + Y GN PW E D
Sbjct: 151 PHGAFDRLSSLTHAYLFGN-------PWDCECRD 177
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 148 MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLT 207
+T L L N N ELP + ++ L+VLDLS N+L+ +P+ +++ Y YF N++T
Sbjct: 249 LTRLYL-NGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 208 GAIPPW 213
PW
Sbjct: 307 TL--PW 310
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 339 SDSQLYTNARLSAISLTYYGFCLGNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGN 398
D LY R + S Y G Y + L FAE+ F + +++FDV + G+
Sbjct: 56 EDQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ------QKVFDVRVNGH 109
Query: 399 LVLKDLNIENEAG 411
V+KDL+I + G
Sbjct: 110 TVVKDLDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 339 SDSQLYTNARLSAISLTYYGFCLGNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGN 398
D LY R + S Y G Y + L FAE+ F + +++FDV + G+
Sbjct: 52 EDQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ------QKVFDVRVNGH 105
Query: 399 LVLKDLNIENEAG 411
V+KDL+I + G
Sbjct: 106 TVVKDLDIFDRVG 118
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 31/189 (16%)
Query: 47 KLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGP 106
KL +S N L F L N+K +GDN LE+L ++ L
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS- 166
Query: 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK------------------- 147
IP+ +L +GL+ + L I+ + + +F +L K
Sbjct: 167 IPTE--ALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 148 ---MTNLILRNCNITGELPPYLG--KMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFT 202
+T+L + +CN+T PYL + L+ L+LS+N +S S +L + I
Sbjct: 223 GLNLTSLSITHCNLTAV--PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 203 GNLLTGAIP 211
G L P
Sbjct: 281 GGQLAVVEP 289
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ + L VLD+SFN+L+ L E+
Sbjct: 74 DGTLPVLGTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLPLGALRGLGEL 127
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ NN T+ A
Sbjct: 128 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA 166
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ NN T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA 165
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ NN T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA 165
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ NN T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA 165
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ NN T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPA 165
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 47 KLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGP 106
KL L SN + K F +LT ++ + DN+ + LE L++ + L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNG-PEATFPQLGNKKMTNLILRNCNITGELPP- 164
+P G+ F+ LV + L L + L P F L K+T L L N LP
Sbjct: 100 LPIGV-----FDQLVNLAELRLDRNQLKSLPPRVFDSLT--KLTYLSL-GYNELQSLPKG 151
Query: 165 YLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLL 206
K+T+LK L L N+L FD L E+ + N L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ + L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ N T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPA 165
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ N T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPA 165
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ N T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPA 165
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ N+ T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNDLTELPA 165
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 137 EATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEV 196
+ T P LG +++ L++ + G+ P L VLD+SFN+L+ L E+
Sbjct: 73 DGTLPVLGTLDLSHNQLQSLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGEL 126
Query: 197 DYIYFTGNLLTGAIPPWML---EKGDKIDLSYNNFTDGSA 233
+Y GN L +PP +L K +K+ L+ N T+ A
Sbjct: 127 QELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPA 165
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 63 FAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVC 122
+LTN+ + NQ T L++L + + L +P G+F + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVF-----DKLTN 134
Query: 123 MVFLFLRISDLNG-PEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNK 181
+ +L+L + L P+ F +L N +T L L N + K+T LK L L+ N+
Sbjct: 135 LTYLYLYHNQLQSLPKGVFDKLTN--LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 182 LSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLS 224
L FD L + +I+ N PW D + LS
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNN-------PWDCACSDILYLS 228
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 66 LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP----SGIFSLEKFNGLV 121
L N+ +NQ T P ++N TKL + + + + P + + L FN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 122 CMVFLFLRISDLNGPEATFPQLGN----KKMTNLILRN--CNITGELPPYLGKMTTLKVL 175
+ +++LN E + + + +T+L N N +L P L +TTL+ L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERL 178
Query: 176 DLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230
D+S NK+S S L ++ + T N ++ P +L D++ L+ N D
Sbjct: 179 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 50 LSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG--QIPSFIQNWTKLEKLFIQ--PSGLVG 105
L+S + +GE L N++ R+ ++TG +P+ I N L+ L I+ P +G
Sbjct: 170 LASTDASGE----HQGLVNLQSLRL---EWTGIRSLPASIANLQNLKSLKIRNSPLSALG 222
Query: 106 PIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQL--GNKKMTNLILRNCNITGELP 163
P + LE+ + C +P + G + LIL++C+ LP
Sbjct: 223 PAIHHLPKLEELDLRGCTAL------------RNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 164 PYLGKMTTLKVLDL 177
+ ++T L+ LDL
Sbjct: 271 LDIHRLTQLEKLDL 284
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 66 LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP----SGIFSLEKFNGLV 121
L N+ +NQ T P ++N TKL + + + + P + + L FN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 122 CMVFLFLRISDLNGPEATFPQLGN----KKMTNLILRN-CNITGELPPYLGKMTTLKVLD 176
+ +++LN E + + + +T+L N N +L P L +TTL+ LD
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP-LANLTTLERLD 178
Query: 177 LSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230
+S NK+S S L ++ + T N ++ P +L D++ L+ N D
Sbjct: 179 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 66 LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP----SGIFSLEKFNGLV 121
L N+ +NQ T P ++N TKL + + + + P + + L FN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 122 CMVFLFLRISDLNGPEATFPQLGN----KKMTNLILRN-CNITGELPPYLGKMTTLKVLD 176
+ +++LN E + + + +T+L N N +L P L +TTL+ LD
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP-LANLTTLERLD 178
Query: 177 LSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230
+S NK+S S L ++ + T N ++ P +L D++ L+ N D
Sbjct: 179 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 230
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 66 LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP----SGIFSLEKFNGLV 121
L N+ +NQ T P ++N TKL + + + + P + + L FN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 122 CMVFLFLRISDLNGPEATFPQLGN----KKMTNL--ILRNCNITGELPPYLGKMTTLKVL 175
+ +++LN E + + + +T+L + + N +L P L +TTL+ L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP-LANLTTLERL 178
Query: 176 DLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230
D+S NK+S S L ++ + T N ++ P +L D++ L+ N D
Sbjct: 179 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 15/175 (8%)
Query: 66 LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP----SGIFSLEKFNGLV 121
L N+ +NQ T P ++N TKL + + + + P + + L FN +
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 122 CMVFLFLRISDLNGPEATFPQLGN----KKMTNL--ILRNCNITGELPPYLGKMTTLKVL 175
+ +++LN E + + + +T+L + + N +L P L +TTL+ L
Sbjct: 120 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP-LANLTTLERL 178
Query: 176 DLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230
D+S NK+S S L ++ + T N ++ P +L D++ L+ N D
Sbjct: 179 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 66 LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP----SGIFSLEKFNGLV 121
L N+ +NQ T P ++N TKL + + + + P + + L FN +
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 124
Query: 122 CMVFLFLRISDLNGPEATFPQLGN----KKMTNLI-LRNCNITGELPPYLGKMTTLKVLD 176
+ +++LN E + + + +T+L L N +L P L +TTL+ LD
Sbjct: 125 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLD 183
Query: 177 LSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230
+S NK+S S L ++ + T N ++ P +L D++ L+ N D
Sbjct: 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 66 LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP----SGIFSLEKFNGLV 121
L N+ +NQ T P ++N TKL + + + + P + + L FN +
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 123
Query: 122 CMVFLFLRISDLNGPEATFPQLGN----KKMTNLI-LRNCNITGELPPYLGKMTTLKVLD 176
+ +++LN E + + + +T+L L N +L P L +TTL+ LD
Sbjct: 124 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLD 182
Query: 177 LSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230
+S NK+S S L ++ + T N ++ P +L D++ L+ N D
Sbjct: 183 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 234
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 47 KLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGP 106
+L+LS N ELP+ K +++ R+ +N+ T S + L ++ + G P
Sbjct: 104 RLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSV---FNGLNQMIVVELG-TNP 156
Query: 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYL 166
+ S F G+ + ++ RI+D N T PQ +T L L IT L
Sbjct: 157 LKSSGIENGAFQGMKKLSYI--RIADTN--ITTIPQGLPPSLTELHLDGNKITKVDAASL 212
Query: 167 GKMTTLKVLDLSFNKLSG 184
+ L L LSFN +S
Sbjct: 213 KGLNNLAKLGLSFNSISA 230
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPP-Y 165
+P+G+F +K L +V + ++ L P+ F +L N NL N LP
Sbjct: 100 LPNGVF--DKLTNLKELVLVENQLQSL--PDGVFDKLTNLTYLNLA---HNQLQSLPKGV 152
Query: 166 LGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLL 206
K+T L LDLS+N+L FD L ++ + N L
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 40/153 (26%)
Query: 62 TFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLV 121
F KLTN+K+ + +NQ +P G+ F+ L
Sbjct: 104 VFDKLTNLKELVLVENQLQS-------------------------LPDGV-----FDKLT 133
Query: 122 CMVFLFLRISDLNG-PEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFN 180
+ +L L + L P+ F +L N +T L L + K+T LK L L N
Sbjct: 134 NLTYLNLAHNQLQSLPKGVFDKLTN--LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPW 213
+L FD L + YI+ N PW
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDN-------PW 217
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 47 KLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGP 106
+L+LS N ELP+ K +++ R+ +N+ T S + L ++ + G P
Sbjct: 104 RLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSV---FNGLNQMIVVELG-TNP 156
Query: 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYL 166
+ S F G+ + ++ RI+D N T PQ +T L L IT L
Sbjct: 157 LKSSGIENGAFQGMKKLSYI--RIADTN--ITTIPQGLPPSLTELHLDGNKITKVDAASL 212
Query: 167 GKMTTLKVLDLSFNKLSG 184
+ L L LSFN +S
Sbjct: 213 KGLNNLAKLGLSFNSISA 230
>pdb|1O91|A Chain A, Crystal Structure Of A Collagen Viii Nc1 Domain Trimer
pdb|1O91|B Chain B, Crystal Structure Of A Collagen Viii Nc1 Domain Trimer
pdb|1O91|C Chain C, Crystal Structure Of A Collagen Viii Nc1 Domain Trimer
Length = 178
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 252 NNSTGIVSCLRSFQCPKTYYYSLHINCGGSEV 283
N TGI +C + P YY++ H++C G V
Sbjct: 81 NPQTGIFTC----EVPGVYYFAYHVHCKGGNV 108
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 91 TKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNG-PEATFPQLGNKKMT 149
T L +L++ + L +P+G+F N L + +L L + L P F +L K
Sbjct: 52 TSLTQLYLGGNKLQS-LPNGVF-----NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 150 NLILRNCNITGELPP-YLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTG 208
L N N LP K+T LK L L N+L FD L + YI+ N
Sbjct: 106 AL---NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN---- 158
Query: 209 AIPPW 213
PW
Sbjct: 159 ---PW 160
>pdb|1YQE|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
Af0625
Length = 282
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 370 LHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGT 429
+ F EILF ++ S G++IF V++ GN+ D GG ++ KP + N
Sbjct: 69 IDFEEILFAS-RHSSKDGRKIFTVHVSGNVGTADF------GGKPYSLAKPSPQTMKNYV 121
Query: 430 MEIR 433
+ +R
Sbjct: 122 LALR 125
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 70/183 (38%), Gaps = 17/183 (9%)
Query: 47 KLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGP 106
KL L S TF LT + + NQ + T+L L + + L
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS- 97
Query: 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNG-PEATFPQLGNKKMTNLILRNCNITGELPP- 164
+P G+F + L + L+L + L P F +L K L N N +P
Sbjct: 98 LPLGVF-----DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL---NTNQLQSIPAG 149
Query: 165 YLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGA------IPPWMLEKG 218
K+T L+ L LS N+L FD L ++ I GN + + W+ E
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENS 209
Query: 219 DKI 221
+K+
Sbjct: 210 NKV 212
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 70/183 (38%), Gaps = 17/183 (9%)
Query: 47 KLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGP 106
KL L S TF LT + + NQ + T+L L + + L
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS- 97
Query: 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNG-PEATFPQLGNKKMTNLILRNCNITGELPP- 164
+P G+F + L + L+L + L P F +L K L N N +P
Sbjct: 98 LPLGVF-----DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL---NTNQLQSIPAG 149
Query: 165 YLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGA------IPPWMLEKG 218
K+T L+ L LS N+L FD L ++ I GN + + W+ E
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS 209
Query: 219 DKI 221
+K+
Sbjct: 210 NKV 212
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 23/107 (21%)
Query: 101 SGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGP-----EATFPQLGNKKMTNLILRN 155
+ LVGP + +E F+G ++R+ P + F L N+++ N L
Sbjct: 308 TALVGPRATSYTLVESFSGK------YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNA 361
Query: 156 ------------CNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNF 190
NIT ++ P+ +K ++ + KLS H+P NF
Sbjct: 362 HNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNF 408
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 48 LHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPI 107
LHL N T P F LT + + NQ T TKL L + + L I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS-I 103
Query: 108 PSGIF 112
P G+F
Sbjct: 104 PMGVF 108
>pdb|1M31|A Chain A, Three-Dimensional Solution Structure Of Apo-Mts1
pdb|1M31|B Chain B, Three-Dimensional Solution Structure Of Apo-Mts1
pdb|2Q91|A Chain A, Structure Of The Ca2+-Bound Activated Form Of The S100a4
Metastasis Factor
pdb|2Q91|B Chain B, Structure Of The Ca2+-Bound Activated Form Of The S100a4
Metastasis Factor
pdb|3CGA|A Chain A, Crystal Structure Of Metastasis-Associated Protein S100a4
In The Active, Calcium-Bound Form
pdb|3CGA|B Chain B, Crystal Structure Of Metastasis-Associated Protein S100a4
In The Active, Calcium-Bound Form
pdb|3KO0|A Chain A, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|B Chain B, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|C Chain C, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|D Chain D, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|E Chain E, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|F Chain F, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|G Chain G, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|H Chain H, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|I Chain I, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|J Chain J, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|K Chain K, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|L Chain L, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|M Chain M, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|N Chain N, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|O Chain O, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|P Chain P, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|Q Chain Q, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|R Chain R, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|S Chain S, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
pdb|3KO0|T Chain T, Structure Of The Tfp-Ca2+-Bound Activated Form Of The
S100a4 Metastasis Factor
Length = 101
Score = 28.5 bits (62), Expect = 8.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 158 ITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDY 198
+T ELP +LGK T + +F KL ++ SN D+ EVD+
Sbjct: 38 LTRELPSFLGKRTD----EAAFQKLMSNLDSNRDN--EVDF 72
>pdb|3M0W|A Chain A, Structure Of S100a4 With Pcp
pdb|3M0W|B Chain B, Structure Of S100a4 With Pcp
pdb|3M0W|C Chain C, Structure Of S100a4 With Pcp
pdb|3M0W|D Chain D, Structure Of S100a4 With Pcp
pdb|3M0W|E Chain E, Structure Of S100a4 With Pcp
pdb|3M0W|F Chain F, Structure Of S100a4 With Pcp
pdb|3M0W|G Chain G, Structure Of S100a4 With Pcp
pdb|3M0W|H Chain H, Structure Of S100a4 With Pcp
pdb|3M0W|I Chain I, Structure Of S100a4 With Pcp
pdb|3M0W|J Chain J, Structure Of S100a4 With Pcp
Length = 100
Score = 28.5 bits (62), Expect = 8.9, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 158 ITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDY 198
+T ELP +LGK T + +F KL ++ SN D+ EVD+
Sbjct: 37 LTRELPSFLGKRTD----EAAFQKLMSNLDSNRDN--EVDF 71
>pdb|3C1V|A Chain A, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|3C1V|B Chain B, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|3C1V|C Chain C, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|3C1V|D Chain D, The 1.5 A Crystal Structure Of Ca2+-Bound S100a4
pdb|2LNK|A Chain A, Solution Structure Of Ca-Bound S100a4 In Complex With
Non-Muscle Myosin Iia
pdb|2LNK|B Chain B, Solution Structure Of Ca-Bound S100a4 In Complex With
Non-Muscle Myosin Iia
Length = 113
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 158 ITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDY 198
+T ELP +LGK T + +F KL ++ SN D+ EVD+
Sbjct: 50 LTRELPSFLGKRTD----EAAFQKLMSNLDSNRDN--EVDF 84
>pdb|4ETO|A Chain A, Structure Of S100a4 In Complex With Non-Muscle Myosin-Iia
Peptide
pdb|4ETO|B Chain B, Structure Of S100a4 In Complex With Non-Muscle Myosin-Iia
Peptide
pdb|4HSZ|A Chain A, Structure Of Truncated (delta8c) S100a4
pdb|4HSZ|B Chain B, Structure Of Truncated (delta8c) S100a4
pdb|4HSZ|C Chain C, Structure Of Truncated (delta8c) S100a4
pdb|4HSZ|D Chain D, Structure Of Truncated (delta8c) S100a4
Length = 93
Score = 28.1 bits (61), Expect = 9.8, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 158 ITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDY 198
+T ELP +LGK T + +F KL ++ SN D+ EVD+
Sbjct: 38 LTRELPSFLGKRTD----EAAFQKLMSNLDSNRDN--EVDF 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,001,402
Number of Sequences: 62578
Number of extensions: 611787
Number of successful extensions: 1341
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 135
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)