Query 045177
Match_columns 461
No_of_seqs 608 out of 3473
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:35:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11721 Malectin: Di-glucose 100.0 3.8E-33 8.2E-38 246.3 8.3 169 273-457 2-174 (174)
2 PLN00113 leucine-rich repeat r 99.9 3.8E-26 8.2E-31 255.4 15.6 231 1-240 146-380 (968)
3 PLN00113 leucine-rich repeat r 99.9 2.4E-25 5.2E-30 249.0 15.7 238 2-242 315-573 (968)
4 KOG4194 Membrane glycoprotein 99.9 1.5E-23 3.2E-28 205.7 1.3 230 2-233 132-382 (873)
5 KOG4194 Membrane glycoprotein 99.9 4.4E-23 9.6E-28 202.3 -0.6 235 2-239 180-439 (873)
6 KOG0444 Cytoskeletal regulator 99.9 4.2E-23 9.1E-28 203.7 -1.5 222 12-246 96-322 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 1.3E-22 2.8E-27 200.3 -0.3 231 1-245 61-296 (1255)
8 PLN03150 hypothetical protein; 99.8 2.5E-18 5.4E-23 181.6 13.9 161 272-460 192-360 (623)
9 KOG0472 Leucine-rich repeat pr 99.8 3.3E-21 7.1E-26 181.8 -8.1 223 2-233 52-292 (565)
10 KOG0617 Ras suppressor protein 99.7 1.5E-20 3.3E-25 158.3 -5.3 181 15-232 29-215 (264)
11 KOG0472 Leucine-rich repeat pr 99.7 1.4E-20 3.1E-25 177.5 -6.8 210 3-230 99-311 (565)
12 KOG4237 Extracellular matrix p 99.7 1.6E-19 3.4E-24 170.3 -3.6 248 2-250 74-359 (498)
13 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 170.0 11.9 200 2-229 185-401 (754)
14 KOG0617 Ras suppressor protein 99.7 8.8E-19 1.9E-23 147.7 -4.5 176 2-214 40-219 (264)
15 PRK15370 E3 ubiquitin-protein 99.7 3.9E-16 8.5E-21 166.0 12.0 185 19-230 178-381 (754)
16 PRK15387 E3 ubiquitin-protein 99.7 1.1E-15 2.4E-20 161.8 14.5 217 1-246 207-451 (788)
17 PLN03210 Resistant to P. syrin 99.6 7.8E-15 1.7E-19 165.8 17.6 228 11-245 604-874 (1153)
18 PRK15387 E3 ubiquitin-protein 99.6 2.4E-15 5.2E-20 159.3 12.5 201 2-236 229-465 (788)
19 PLN03210 Resistant to P. syrin 99.6 1E-14 2.2E-19 164.9 16.3 224 9-246 578-855 (1153)
20 KOG4237 Extracellular matrix p 99.6 3.5E-17 7.5E-22 154.6 -3.0 222 19-248 67-333 (498)
21 KOG0618 Serine/threonine phosp 99.6 2.8E-17 6.1E-22 169.7 -4.4 204 19-227 241-487 (1081)
22 cd00116 LRR_RI Leucine-rich re 99.5 1.6E-15 3.4E-20 148.3 1.0 227 1-229 4-263 (319)
23 KOG0618 Serine/threonine phosp 99.5 8.5E-16 1.9E-20 158.9 -2.9 191 18-214 218-426 (1081)
24 cd00116 LRR_RI Leucine-rich re 99.5 2.6E-15 5.5E-20 146.8 -0.1 228 2-231 30-293 (319)
25 PF12819 Malectin_like: Carboh 99.5 1.6E-13 3.5E-18 134.8 11.9 158 272-460 179-345 (347)
26 KOG0532 Leucine-rich repeat (L 99.5 1.8E-15 3.9E-20 149.1 -2.6 176 21-214 77-253 (722)
27 KOG0532 Leucine-rich repeat (L 99.4 4.4E-15 9.5E-20 146.3 -4.4 205 23-246 54-263 (722)
28 COG4886 Leucine-rich repeat (L 99.3 1.6E-12 3.6E-17 131.0 6.6 181 17-235 114-296 (394)
29 KOG3593 Predicted receptor-lik 99.3 1.7E-12 3.8E-17 117.2 4.6 134 272-435 60-211 (355)
30 COG4886 Leucine-rich repeat (L 99.2 7.9E-12 1.7E-16 126.0 6.0 175 1-214 122-297 (394)
31 PLN03150 hypothetical protein; 99.2 3E-11 6.6E-16 128.0 9.9 94 20-113 419-512 (623)
32 PF14580 LRR_9: Leucine-rich r 99.0 2.2E-10 4.7E-15 100.6 5.1 85 15-104 15-101 (175)
33 PF12819 Malectin_like: Carboh 99.0 3.1E-09 6.7E-14 104.6 10.9 109 339-461 46-160 (347)
34 KOG3207 Beta-tubulin folding c 99.0 2.3E-10 5E-15 110.2 2.1 209 16-231 118-341 (505)
35 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.5E-15 106.2 -0.5 142 33-212 274-416 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.4E-09 3.1E-14 95.5 5.0 100 1-105 25-127 (175)
37 PF13855 LRR_8: Leucine rich r 98.9 9.4E-10 2E-14 79.5 3.0 59 20-78 2-60 (61)
38 KOG1259 Nischarin, modulator o 98.9 3.9E-10 8.4E-15 103.8 1.0 57 148-207 331-387 (490)
39 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.5E-14 79.0 2.6 61 43-103 1-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-09 3.1E-14 118.1 3.7 220 7-233 559-787 (889)
41 KOG0531 Protein phosphatase 1, 98.8 1.5E-09 3.2E-14 110.1 -0.0 85 15-104 91-175 (414)
42 KOG1909 Ran GTPase-activating 98.7 3.7E-09 8E-14 99.4 0.7 217 14-230 25-284 (382)
43 KOG3207 Beta-tubulin folding c 98.7 7.9E-09 1.7E-13 99.8 2.3 189 13-209 140-341 (505)
44 KOG1909 Ran GTPase-activating 98.7 2.7E-09 5.9E-14 100.3 -1.0 227 1-229 36-311 (382)
45 KOG0531 Protein phosphatase 1, 98.7 4.8E-09 1E-13 106.3 0.2 98 1-104 101-199 (414)
46 KOG1859 Leucine-rich repeat pr 98.5 1.6E-09 3.4E-14 110.4 -7.3 159 12-207 102-292 (1096)
47 KOG4658 Apoptotic ATPase [Sign 98.3 3.6E-07 7.8E-12 99.6 4.4 101 18-119 544-646 (889)
48 COG5238 RNA1 Ran GTPase-activa 98.2 6.6E-07 1.4E-11 81.7 1.7 217 15-231 26-287 (388)
49 KOG4579 Leucine-rich repeat (L 98.1 5.5E-07 1.2E-11 74.1 -0.7 83 19-104 53-136 (177)
50 KOG2982 Uncharacterized conser 98.1 1E-06 2.2E-11 81.6 0.6 83 19-101 71-156 (418)
51 KOG4579 Leucine-rich repeat (L 98.0 6.1E-07 1.3E-11 73.8 -1.3 104 1-107 59-162 (177)
52 PF12799 LRR_4: Leucine Rich r 98.0 7.7E-06 1.7E-10 54.4 3.8 36 44-80 2-37 (44)
53 KOG2120 SCF ubiquitin ligase, 98.0 1.7E-07 3.6E-12 86.7 -6.0 172 44-225 186-372 (419)
54 KOG1859 Leucine-rich repeat pr 98.0 2E-07 4.3E-12 95.5 -6.4 85 14-104 182-267 (1096)
55 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.3E-10 53.7 4.0 37 19-56 1-37 (44)
56 PRK15386 type III secretion pr 98.0 4.7E-05 1E-09 75.3 10.1 55 17-77 50-104 (426)
57 KOG2982 Uncharacterized conser 97.9 2.8E-06 6E-11 78.7 1.1 80 1-80 77-159 (418)
58 PRK15386 type III secretion pr 97.8 0.00012 2.7E-09 72.3 9.8 137 39-204 48-187 (426)
59 COG5238 RNA1 Ran GTPase-activa 97.7 1.5E-05 3.3E-10 73.0 2.0 228 1-230 36-317 (388)
60 KOG2120 SCF ubiquitin ligase, 97.7 2.2E-06 4.8E-11 79.4 -3.6 176 19-204 185-373 (419)
61 KOG1644 U2-associated snRNP A' 97.7 4.9E-05 1.1E-09 66.8 4.9 85 19-105 42-127 (233)
62 KOG1644 U2-associated snRNP A' 97.4 0.00021 4.5E-09 63.0 5.0 80 21-104 21-101 (233)
63 KOG3665 ZYG-1-like serine/thre 97.2 0.00028 6.1E-09 75.4 3.7 75 43-119 122-199 (699)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00021 4.5E-09 65.5 1.7 68 35-104 35-104 (260)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00049 1.1E-08 63.1 2.7 92 11-104 35-129 (260)
66 PF13306 LRR_5: Leucine rich r 96.9 0.0017 3.6E-08 54.1 5.3 86 12-100 5-90 (129)
67 KOG2123 Uncharacterized conser 96.7 0.00017 3.7E-09 66.5 -2.0 88 18-109 18-106 (388)
68 PF13306 LRR_5: Leucine rich r 96.7 0.0047 1E-07 51.3 6.6 62 37-100 6-67 (129)
69 KOG3665 ZYG-1-like serine/thre 96.5 0.0018 3.8E-08 69.4 3.4 84 18-103 147-232 (699)
70 KOG2123 Uncharacterized conser 96.5 0.00019 4.1E-09 66.3 -3.5 80 15-97 37-123 (388)
71 KOG0473 Leucine-rich repeat pr 95.4 0.00038 8.1E-09 62.7 -6.6 95 7-104 30-124 (326)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0098 2.1E-07 32.9 1.1 18 172-190 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 95.1 0.009 1.9E-07 33.0 0.8 12 45-56 2-13 (22)
74 KOG4308 LRR-containing protein 94.0 0.00045 9.8E-09 70.7 -11.0 84 148-231 206-305 (478)
75 KOG4308 LRR-containing protein 92.8 0.00098 2.1E-08 68.3 -10.8 62 148-209 235-305 (478)
76 KOG0473 Leucine-rich repeat pr 92.6 0.0021 4.5E-08 58.0 -7.6 77 1-80 48-124 (326)
77 PF13504 LRR_7: Leucine rich r 92.4 0.08 1.7E-06 27.2 1.3 13 171-183 2-14 (17)
78 PF13504 LRR_7: Leucine rich r 91.9 0.12 2.5E-06 26.5 1.5 7 47-53 5-11 (17)
79 smart00370 LRR Leucine-rich re 90.3 0.3 6.5E-06 27.9 2.4 14 43-56 2-15 (26)
80 smart00369 LRR_TYP Leucine-ric 90.3 0.3 6.5E-06 27.9 2.4 14 43-56 2-15 (26)
81 KOG1947 Leucine rich repeat pr 89.7 0.11 2.4E-06 53.4 0.4 90 15-104 210-308 (482)
82 smart00369 LRR_TYP Leucine-ric 88.4 0.41 8.8E-06 27.4 2.0 17 66-82 1-17 (26)
83 smart00370 LRR Leucine-rich re 88.4 0.41 8.8E-06 27.4 2.0 17 66-82 1-17 (26)
84 PF13516 LRR_6: Leucine Rich r 84.1 0.24 5.2E-06 27.8 -0.5 11 45-55 4-14 (24)
85 smart00365 LRR_SD22 Leucine-ri 74.0 2.9 6.3E-05 24.1 1.9 14 43-56 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 72.0 2.7 5.9E-05 24.2 1.4 16 195-211 3-18 (26)
87 KOG3864 Uncharacterized conser 67.8 1.2 2.6E-05 39.8 -1.0 34 21-54 103-136 (221)
88 smart00368 LRR_RI Leucine rich 65.6 4.6 0.0001 23.5 1.5 13 171-183 3-15 (28)
89 KOG3864 Uncharacterized conser 63.2 1.8 4E-05 38.7 -0.7 83 143-225 98-185 (221)
90 KOG3763 mRNA export factor TAP 58.7 6.6 0.00014 40.4 2.2 65 41-105 216-284 (585)
91 KOG1947 Leucine rich repeat pr 58.3 5.7 0.00012 40.6 1.8 86 14-99 238-329 (482)
92 KOG3763 mRNA export factor TAP 56.1 7.3 0.00016 40.2 2.0 38 64-101 215-254 (585)
93 KOG4242 Predicted myosin-I-bin 52.7 38 0.00082 34.5 6.2 38 171-208 414-454 (553)
94 KOG4242 Predicted myosin-I-bin 51.0 48 0.0011 33.8 6.7 101 1-103 171-280 (553)
95 TIGR00864 PCC polycystin catio 39.3 23 0.00051 43.7 3.0 32 1-32 1-32 (2740)
96 PF03422 CBM_6: Carbohydrate b 35.1 2.4E+02 0.0051 22.6 10.9 70 359-439 39-111 (125)
97 TIGR00864 PCC polycystin catio 32.6 33 0.00072 42.5 2.8 32 25-56 1-32 (2740)
98 PF08400 phage_tail_N: Prophag 32.0 28 0.00062 29.0 1.6 19 354-372 46-64 (134)
99 PF07495 Y_Y_Y: Y_Y_Y domain; 25.9 92 0.002 21.8 3.3 17 359-375 34-50 (66)
100 PF07162 B9-C2: Ciliary basal 25.2 78 0.0017 27.5 3.3 67 357-435 99-165 (168)
101 PF12167 DUF3596: Domain of un 24.1 97 0.0021 22.1 3.0 17 423-439 4-20 (64)
102 smart00367 LRR_CC Leucine-rich 22.9 59 0.0013 18.2 1.4 11 43-53 2-12 (26)
103 PF13860 FlgD_ig: FlgD Ig-like 21.1 61 0.0013 24.3 1.5 25 348-372 53-77 (81)
104 KOG4341 F-box protein containi 20.8 43 0.00093 33.6 0.8 89 16-104 317-414 (483)
105 KOG4341 F-box protein containi 20.1 60 0.0013 32.6 1.6 88 17-104 292-385 (483)
No 1
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.98 E-value=3.8e-33 Score=246.32 Aligned_cols=169 Identities=44% Similarity=0.727 Sum_probs=111.2
Q ss_pred ceecccCCCeeeecCCeeeecCCCCCCCce-eeecCCceEEeeeeeccCCCCCCCceeEeccccccCCchhhhhhhccCC
Q 045177 273 SLHINCGGSEVTANGDTAFEEDTYEAGPST-FTLSRTNWGLSSTGHFLDNSIKTDTYIQTNTSRLLMSDSQLYTNARLSA 351 (461)
Q Consensus 273 ~~~i~~gg~~~~~~~~~~~~~d~~~~g~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~r~~~ 351 (461)
.+||||||+..+...+..|..|....+... |..+ ... .............+.+++||||+|++.
T Consensus 2 ~~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~--------------~~~-~~~~~~~~~~i~~t~d~~Lyqt~R~g~ 66 (174)
T PF11721_consen 2 VLRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVS--------------SDN-NGSTSSTNSSIPGTTDDPLYQTERYGP 66 (174)
T ss_dssp EEEEEETSSSEEETTTEEE-SSSSSTTSS--------------------------SSTTS--TTS-HHHHHTTT-----S
T ss_pred EEEEECCCCcccCCCCCEEcCCCCCCCCCcccccc--------------ccc-ccccccccccccCCCchhhhHhhcCCC
Confidence 589999999996666666888865544332 1111 000 000111233444577789999999997
Q ss_pred Ccccccccc-ccCccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEE-EEEEeCCe
Q 045177 352 ISLTYYGFC-LGNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPF-SAAVTNGT 429 (461)
Q Consensus 352 ~~~~~~~~~-~~~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~-~v~v~~~~ 429 (461)
..+.| .+| +++|.|+|+|||||+++..++.+..+|+|||||+|||++|+++|||++++|+..+|+++.| .|.|+||.
T Consensus 67 ~~f~Y-~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~ 145 (174)
T PF11721_consen 67 SSFSY-DIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGT 145 (174)
T ss_dssp SSEEE-EEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTE
T ss_pred CceEE-EEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCc
Confidence 77776 556 9999999999999999976555677999999999999999999999999988776777777 89999999
Q ss_pred EEEEEEEcCCcceeccCCCccc-CeeeeE
Q 045177 430 MEIRLYWAGKGTTEIPFKGDYG-PLISAI 457 (461)
Q Consensus 430 l~i~f~~~~~g~~~~p~~~~~~-~~i~ai 457 (461)
|+|+|.|++||++++|..+.++ |+||||
T Consensus 146 L~i~f~~~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 146 LNIQFVWAGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp EETTEEEE--SEEEEEEESSSSSSSEEEE
T ss_pred EEEEEEecCCCcEEeeccccCCCcEEeeC
Confidence 9999999999999999988886 999998
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=3.8e-26 Score=255.42 Aligned_cols=231 Identities=29% Similarity=0.474 Sum_probs=161.0
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..+.++++|++|+|++|.+.+.+|..++++++|++|+|++|+++
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l 158 (461)
+.+|..+.++++|++|++++|.+.+.+|..+..+.+|+. +.+.. +.....+| .+.... |++|+|++|.+
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~--------L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY--------LFLYQ-NKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE--------EECcC-CeeeccCchhHhhccCcCEEECcCCee
Confidence 777777777777777777777777777777766666655 33333 11222222 233333 77777777777
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCccc
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESS 236 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~ 236 (461)
.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+|++|.+++.+|..+ .++|+.|+|++|++++.+|..+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 77777777777777777777777776777777777777777777777776666655 4456677777777776666666
Q ss_pred cccc
Q 045177 237 CQKR 240 (461)
Q Consensus 237 c~~~ 240 (461)
|...
T Consensus 377 ~~~~ 380 (968)
T PLN00113 377 CSSG 380 (968)
T ss_pred hCcC
Confidence 5443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=2.4e-25 Score=248.95 Aligned_cols=238 Identities=31% Similarity=0.474 Sum_probs=148.3
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 55666666667667777777777777777766666666666666666666666665566655555555555555555555
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCccccccccccc------------------ccceeeeecccCCCCCCCCCcc-
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGL------------------VCMVFLFLRISDLNGPEATFPQ- 142 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L------------------~~l~~~~l~~~~l~~~~~~~~~- 142 (461)
.+|..+..+++|+.|++++|++++.+|..+..++.|+.| ..|+. +.+.+ +.....+|.
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--L~L~~-n~~~~~~p~~ 471 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM--LSLAR-NKFFGGLPDS 471 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE--EECcC-ceeeeecCcc
Confidence 555555555555555555555555555444443333321 11111 22332 111222232
Q ss_pred cCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCc
Q 045177 143 LGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDK 220 (461)
Q Consensus 143 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~ 220 (461)
+...+|+.|+|++|++++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|.+++.+|..+ ++.|+.
T Consensus 472 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 222347777777777777777777777777777777777777777777777777777777777777777766 456777
Q ss_pred cccccCcccCCCCccccccccc
Q 045177 221 IDLSYNNFTDGSAESSCQKRSV 242 (461)
Q Consensus 221 LdLs~N~l~~~~p~~~c~~~~l 242 (461)
|||++|++++.+|..+..+..|
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred EECCCCcccccCChhHhcCccc
Confidence 7777777777777665444333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-23 Score=205.65 Aligned_cols=230 Identities=20% Similarity=0.174 Sum_probs=123.7
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|.+|.|+.+-...++-++.|+.||||.|.|+.+.-..|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|+++.
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 45566666666666666666666666666663333345555566666666666665555556666666666666666664
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCccccccccccccc------------------ceeeeecccCCCCCCCCCcc-
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVC------------------MVFLFLRISDLNGPEATFPQ- 142 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~------------------l~~~~l~~~~l~~~~~~~~~- 142 (461)
..+..|+++++|+.|+|..|+|.-.--..|..|.+|+.|.. ++.++|..+.+.... -..
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn--~g~l 289 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN--EGWL 289 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh--cccc
Confidence 44455566666666666666554211222223333222110 111112211111100 001
Q ss_pred cCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCc
Q 045177 143 LGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDK 220 (461)
Q Consensus 143 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~ 220 (461)
++..+|+.|+|+.|.|....++.+...++|++|+||+|+|+...+..|..+.+|+.|+|++|.|+...-..| +++|+.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 223336777777777776666666677777777777777776566666666666666666666653222222 455566
Q ss_pred cccccCcccCCCC
Q 045177 221 IDLSYNNFTDGSA 233 (461)
Q Consensus 221 LdLs~N~l~~~~p 233 (461)
|||++|.+++.+-
T Consensus 370 LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 370 LDLRSNELSWCIE 382 (873)
T ss_pred hcCcCCeEEEEEe
Confidence 6666666654433
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.4e-23 Score=202.29 Aligned_cols=235 Identities=21% Similarity=0.232 Sum_probs=123.2
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|+|+..--+.|.++.+|..|.|++|+++...+..|..|++|+.|+|..|+|...-.-.|.+|++|+.|.|..|.+..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 44444444444444444444444444444443333344445555555555554442223344444444444444444443
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCccccccccccccc------------------ceeeeecccCCCCCCCCCccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVC------------------MVFLFLRISDLNGPEATFPQL 143 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~------------------l~~~~l~~~~l~~~~~~~~~l 143 (461)
.-...|..|.++++|+|..|++...-..+++.|+.|+.|.. |+.+.|+.+.+..+. -..+
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf 337 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD--EGSF 337 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC--hhHH
Confidence 33445555666666666666665555555566655555321 111111111111110 0012
Q ss_pred CCcc-ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCC---CccccCCCCCCEEEccCCcCCCCCCcc-c--cc
Q 045177 144 GNKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHI---PSNFDDLYEVDYIYFTGNLLTGAIPPW-M--LE 216 (461)
Q Consensus 144 ~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L~~N~l~~~~p~~-~--~~ 216 (461)
...+ |++|.|++|+++..-...|..+++|++|||++|.|+..+ ...|.++++|+.|.|.+|+|. .+|.. | ++
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~ 416 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLE 416 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCc
Confidence 2222 444455555544333344555667777777777766433 335677888888888888888 55543 3 56
Q ss_pred cCCccccccCcccCCCCcccccc
Q 045177 217 KGDKIDLSYNNFTDGSAESSCQK 239 (461)
Q Consensus 217 ~l~~LdLs~N~l~~~~p~~~c~~ 239 (461)
.|++|||.+|.|...-|.++-+.
T Consensus 417 ~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 417 ALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccceecCCCCcceeecccccccc
Confidence 77899999999888777776444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=4.2e-23 Score=203.74 Aligned_cols=222 Identities=23% Similarity=0.327 Sum_probs=102.7
Q ss_pred chhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCC
Q 045177 12 PKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWT 91 (461)
Q Consensus 12 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 91 (461)
|..+.+|..|+.||||+|++. ..|..+..-+++-.|+||+|+|..+....|.+|+.|-.|+||+|++. .+|..+..+.
T Consensus 96 P~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS 173 (1255)
T ss_pred Cchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh
Confidence 333444444444444444444 44444444444444444444444222223344444444444444444 3344444444
Q ss_pred CCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcccccCCccccCC
Q 045177 92 KLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNITGELPPYLGKM 169 (461)
Q Consensus 92 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~~~~~l 169 (461)
.|++|.|++|.+. .+.+..|..|+.|..++++-.. .....+| .+.... |..++|+.|++. .+|+.+-++
T Consensus 174 ~LqtL~Ls~NPL~------hfQLrQLPsmtsL~vLhms~Tq--RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l 244 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLN------HFQLRQLPSMTSLSVLHMSNTQ--RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL 244 (1255)
T ss_pred hhhhhhcCCChhh------HHHHhcCccchhhhhhhccccc--chhhcCCCchhhhhhhhhccccccCCC-cchHHHhhh
Confidence 4444444444432 1222223333333332222211 1111222 132223 555666666665 555555566
Q ss_pred CcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCccc-CCCCcccccccccceee
Q 045177 170 TTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFT-DGSAESSCQKRSVNLFA 246 (461)
Q Consensus 170 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~-~~~p~~~c~~~~l~~~~ 246 (461)
++|+.|+||+|+|+ .+.-......+|++|+|++|+++ .+|..+ +++|+.|.+.+|+++ ..+|+.+.++.+|..+.
T Consensus 245 ~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred hhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHH
Confidence 66666666666665 33334444555666666666666 555555 334555666666554 23555555555555443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.3e-22 Score=200.32 Aligned_cols=231 Identities=23% Similarity=0.308 Sum_probs=192.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCC-CCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFS-GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 79 (461)
++++|++.. +-..++.++.|+.+++..|++. .-+|..+..|..|..||||+|++. ..|..+..-+++-.|+||+|+|
T Consensus 61 s~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 61 SMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred hhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCcc
Confidence 357888874 4456889999999999999985 357888999999999999999999 8899999999999999999999
Q ss_pred CCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCcc
Q 045177 80 TGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNI 158 (461)
Q Consensus 80 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l 158 (461)
..+....|.+++.|-.|+|++|++. .+|+.+..+..|+. +.+++.......+..+...+ |+.|.|++.+-
T Consensus 139 etIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt--------L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 139 ETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT--------LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred ccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh--------hhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 9666667899999999999999997 78888888888887 55555322222333344444 89999998754
Q ss_pred c-ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCcc--ccccCCccccccCcccCCCCcc
Q 045177 159 T-GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPW--MLEKGDKIDLSYNNFTDGSAES 235 (461)
Q Consensus 159 ~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~~l~~LdLs~N~l~~~~p~~ 235 (461)
+ ..+|.++..+.+|..+|||.|.+. .+|+++-.+++|+.|+|++|+|+ .+... ...+++.|+||.|+++. +|++
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~a 286 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDA 286 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHH
Confidence 4 368899999999999999999999 89999999999999999999998 43333 37789999999999997 7999
Q ss_pred ccccccccee
Q 045177 236 SCQKRSVNLF 245 (461)
Q Consensus 236 ~c~~~~l~~~ 245 (461)
.|++.+|.-+
T Consensus 287 vcKL~kL~kL 296 (1255)
T KOG0444|consen 287 VCKLTKLTKL 296 (1255)
T ss_pred HhhhHHHHHH
Confidence 9999877643
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.77 E-value=2.5e-18 Score=181.60 Aligned_cols=161 Identities=27% Similarity=0.340 Sum_probs=111.8
Q ss_pred cceecccCCCeeeec---CCeee--ecCCCCCCCceeeecCCceEEeeeeeccCCCCCCCceeEeccccccCCchhhhhh
Q 045177 272 YSLHINCGGSEVTAN---GDTAF--EEDTYEAGPSTFTLSRTNWGLSSTGHFLDNSIKTDTYIQTNTSRLLMSDSQLYTN 346 (461)
Q Consensus 272 ~~~~i~~gg~~~~~~---~~~~~--~~d~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ly~t 346 (461)
.-+|+||||++.... .+..| +|-|..+..+. .+ ....++....+.+. .......+..+|||
T Consensus 192 ~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~--~~-~~~~~st~~~I~~~-----------~~~~~~~P~~VyqT 257 (623)
T PLN03150 192 TAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFG--SG-SDQAISTENVIKKA-----------SNAPNFYPESLYQS 257 (623)
T ss_pred EEEEEEecCcccccccCCCCCcccCccccCcCcccC--CC-cccccccccccccc-----------cCCCccChHHHhhh
Confidence 357999999865321 22235 77787665432 11 00111111111111 11112235679999
Q ss_pred hccCCC--ccccccccc-cCccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEE
Q 045177 347 ARLSAI--SLTYYGFCL-GNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSA 423 (461)
Q Consensus 347 ~r~~~~--~~~~~~~~~-~~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v 423 (461)
||.... ....|.+++ ++|.|.|||||||+.... ...++|+|||+|||+.++++|||.+.+|+...|++++|.+
T Consensus 258 A~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~----~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v 333 (623)
T PLN03150 258 ALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSI----TAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTV 333 (623)
T ss_pred hccccCCCCceEEEeecCCCCCEEEEEEEEeccCcc----CCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEE
Confidence 998764 223457777 568999999999996421 4568999999999999999999999887778899999999
Q ss_pred EEeCCeEEEEEEEcCCcceeccCCCcccCeeeeEEec
Q 045177 424 AVTNGTMEIRLYWAGKGTTEIPFKGDYGPLISAISLN 460 (461)
Q Consensus 424 ~v~~~~l~i~f~~~~~g~~~~p~~~~~~~~i~ai~v~ 460 (461)
.+++|.|+|+|. |..+. .|+|+||||+
T Consensus 334 ~~~~g~l~isl~---------p~~~s-~pilNaiEI~ 360 (623)
T PLN03150 334 AVSGRTLTIVLQ---------PKKGT-HAIINAIEVF 360 (623)
T ss_pred eecCCeEEEEEe---------eCCCC-cceeeeeeee
Confidence 998899999999 54454 4999999997
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=3.3e-21 Score=181.78 Aligned_cols=223 Identities=26% Similarity=0.367 Sum_probs=151.1
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|.+.... ..+.++..|++|++++|+++ ..|.+++.+..++.|+.++|+++ .+|+.+..+.+|..|+++.|++.
T Consensus 52 ls~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~- 127 (565)
T KOG0472|consen 52 LSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK- 127 (565)
T ss_pred hccCchhhcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-
Confidence 6778887544 45788888999999999988 77788888888889999999988 78888888889999999999888
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeee------------e-cccCCCCCCCCCc-ccCCcc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLF------------L-RISDLNGPEATFP-QLGNKK 147 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~------------l-~~~~l~~~~~~~~-~l~~~~ 147 (461)
.+|+.++.+..|+.|+..+|+++ ..|++++++.++..+....... + .++-+.+....+| .++...
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~ 206 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE 206 (565)
T ss_pred ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh
Confidence 77788888888888888888887 6777777766655522110000 0 0011111222222 244444
Q ss_pred -ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccc-cCCCCCCEEEccCCcCCCCCCccc--cccCCcccc
Q 045177 148 -MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNF-DDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDL 223 (461)
Q Consensus 148 -L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdL 223 (461)
|..|+|++|+|. .+| .|..+..|++|+++.|+|+ .+|... ..+++|..|||..|+++ ..|..+ ++++.+||+
T Consensus 207 ~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 207 SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDL 282 (565)
T ss_pred hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcc
Confidence 666666666666 455 4666666666666666666 344333 36677777777777777 666554 556777777
Q ss_pred ccCcccCCCC
Q 045177 224 SYNNFTDGSA 233 (461)
Q Consensus 224 s~N~l~~~~p 233 (461)
|+|.+++..+
T Consensus 283 SNN~is~Lp~ 292 (565)
T KOG0472|consen 283 SNNDISSLPY 292 (565)
T ss_pred cCCccccCCc
Confidence 7777776433
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1.5e-20 Score=158.29 Aligned_cols=181 Identities=28% Similarity=0.492 Sum_probs=151.4
Q ss_pred hhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCc
Q 045177 15 LANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLE 94 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 94 (461)
+.++++++.|.||+|+++ .+|..+..+.+|+.|++++|+|+ .+|..++.|++|++|+++.|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446788899999999999 77888999999999999999999 88999999999999999999998 8899999999999
Q ss_pred EEEccCCCCcc-CCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCccc
Q 045177 95 KLFIQPSGLVG-PIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLK 173 (461)
Q Consensus 95 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (461)
.|+|..|++.. .+|..++.++. |+.|+|++|.+. .+|..++++++|+
T Consensus 106 vldltynnl~e~~lpgnff~m~t-------------------------------lralyl~dndfe-~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTT-------------------------------LRALYLGDNDFE-ILPPDVGKLTNLQ 153 (264)
T ss_pred hhhccccccccccCCcchhHHHH-------------------------------HHHHHhcCCCcc-cCChhhhhhccee
Confidence 99999998863 45655554443 455888899888 8888899999999
Q ss_pred EEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccc-----cCCccccccCcccCCC
Q 045177 174 VLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLE-----KGDKIDLSYNNFTDGS 232 (461)
Q Consensus 174 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-----~l~~LdLs~N~l~~~~ 232 (461)
.|.+..|.+- .+|..++.+..|+.|.+.+|+++ .+|..+.. +-+.+.+.+|.+-..+
T Consensus 154 il~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 154 ILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred EEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 9999999988 78999999999999999999999 66665421 2235556666654433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=1.4e-20 Score=177.48 Aligned_cols=210 Identities=24% Similarity=0.391 Sum_probs=138.4
Q ss_pred CCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCC
Q 045177 3 LANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQ 82 (461)
Q Consensus 3 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 82 (461)
++|+++ ++|.++..+.+|+.|+.++|.+. .+|+.++.+-.|+.|+..+|+++ .+|+.+..+.+|..|++.+|+++..
T Consensus 99 s~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 99 SHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred ccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC
Confidence 344443 34444445555555555555554 44444555555555555555555 4444555555555666666666533
Q ss_pred CchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccccc
Q 045177 83 IPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNITGE 161 (461)
Q Consensus 83 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~~~ 161 (461)
.|..+. |+.|++|+...|.+. .+|+.++.+.+|.. ++++-+. ...+|.+..++ |++|++..|.|. .
T Consensus 176 ~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~------LyL~~Nk----i~~lPef~gcs~L~Elh~g~N~i~-~ 242 (565)
T KOG0472|consen 176 PENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLEL------LYLRRNK----IRFLPEFPGCSLLKELHVGENQIE-M 242 (565)
T ss_pred CHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHH------HHhhhcc----cccCCCCCccHHHHHHHhcccHHH-h
Confidence 333333 667777777666664 66776666665554 1232222 22456777777 999999999998 6
Q ss_pred CCccc-cCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc-cccCCccccccCcccC
Q 045177 162 LPPYL-GKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM-LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 162 ~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~l~~LdLs~N~l~~ 230 (461)
+|... .++.+|..|||.+|+++ +.|+.+..+.+|++||+++|.|+ .+|..+ .-.++.|-+.+|++..
T Consensus 243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrT 311 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRT 311 (565)
T ss_pred hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHH
Confidence 66554 48999999999999999 89999999999999999999999 566655 2267889999998865
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=1.6e-19 Score=170.27 Aligned_cols=248 Identities=19% Similarity=0.192 Sum_probs=174.7
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccC-CcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSS-NNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
|..|+|+.+.|.+|+.+++|+.||||+|.|+.+.|++|.++.+|..|-+.+ |+|+......|++|..|+-|.+.-|++.
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 678999999999999999999999999999999999999999988777666 9999666668999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecc--------------cCCCCCCCCCcc----
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRI--------------SDLNGPEATFPQ---- 142 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~--------------~~l~~~~~~~~~---- 142 (461)
-...+.|..+++|..|.+..|.+...-...+..+..++.+..-+.-.... ....+.....|.
T Consensus 154 Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~ 233 (498)
T KOG4237|consen 154 CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY 233 (498)
T ss_pred chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH
Confidence 88888999999999999999988733333555555555432211110000 000000000000
Q ss_pred -----cCC----ccccEE---EcccCcccccCC-ccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCC
Q 045177 143 -----LGN----KKMTNL---ILRNCNITGELP-PYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGA 209 (461)
Q Consensus 143 -----l~~----~~L~~L---~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 209 (461)
+.. ..++.+ -.+.+.+.+..| ..|..+++|++|+|++|+|+++-+.+|.+...++.|.|..|+|. .
T Consensus 234 ~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~ 312 (498)
T KOG4237|consen 234 KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-F 312 (498)
T ss_pred HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-H
Confidence 000 001111 112222222333 46888999999999999999888899999999999999999998 4
Q ss_pred CCccc---cccCCccccccCcccCCCCcccccc---cccceeecccC
Q 045177 210 IPPWM---LEKGDKIDLSYNNFTDGSAESSCQK---RSVNLFASFSK 250 (461)
Q Consensus 210 ~p~~~---~~~l~~LdLs~N~l~~~~p~~~c~~---~~l~~~~~~~~ 250 (461)
+.... +..|+.|+|.+|+|+...|..+-.+ ..++++.+...
T Consensus 313 v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 313 VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 44333 4567799999999998888776444 34555554433
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1.2e-16 Score=169.96 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=94.0
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++++++. +|..+. +.|+.|+|++|+|+ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+|++|++.
T Consensus 185 L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 185 LKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred eCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-
Confidence 34455543 344332 35666666666666 4454433 36666666666666 4454332 25666666666665
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCC-----------------CCcccC
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEA-----------------TFPQLG 144 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~-----------------~~~~l~ 144 (461)
.+|..+. .+|+.|++++|++. .+|..+. .+|+. +.+.-+.+..+.. .+|...
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~------L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRY------LSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL 323 (754)
T ss_pred cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcE------EECCCCccccCcccchhhHHHHHhcCCccccCCccc
Confidence 4444442 35666666666655 3444332 12222 1111111111100 111111
Q ss_pred CccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccc
Q 045177 145 NKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLS 224 (461)
Q Consensus 145 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs 224 (461)
..+|+.|++++|.++ .+|..+. ++|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|+ .+|..+...++.|+++
T Consensus 324 ~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs 396 (754)
T PRK15370 324 PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPAALQIMQAS 396 (754)
T ss_pred cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHHHHHHHhhc
Confidence 123555555555555 2343332 45555555555555 3444332 35555555555555 4444444445555555
Q ss_pred cCccc
Q 045177 225 YNNFT 229 (461)
Q Consensus 225 ~N~l~ 229 (461)
+|+|+
T Consensus 397 ~N~L~ 401 (754)
T PRK15370 397 RNNLV 401 (754)
T ss_pred cCCcc
Confidence 55555
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=8.8e-19 Score=147.66 Aligned_cols=176 Identities=24% Similarity=0.418 Sum_probs=148.6
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC-
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT- 80 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 80 (461)
||+|+++ .+|+.++.+.+|+.|++++|+|+ .+|..++.+++|+.|++.-|++. .+|..|+.+|.|+.|+|+.|++.
T Consensus 40 LSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 40 LSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred cccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcccccccc
Confidence 7899998 46667999999999999999999 88999999999999999999999 89999999999999999999986
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
..+|..|..|+.|+.|+|+.|.+. .+|+.++++++|+ .|.++.|.+-
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq-------------------------------il~lrdndll- 163 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ-------------------------------ILSLRDNDLL- 163 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee-------------------------------EEeeccCchh-
Confidence 458889999999999999999997 7888887766544 4788888887
Q ss_pred cCCccccCCCcccEEeccCCcccCCCCccccCCC---CCCEEEccCCcCCCCCCccc
Q 045177 161 ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLY---EVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~L~~N~l~~~~p~~~ 214 (461)
.+|..++.+..|++|++.+|+++ .+|..++.+. +-+.+.+.+|.....+.+.|
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 78999999999999999999999 7777666543 23445566666554444443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=3.9e-16 Score=166.01 Aligned_cols=185 Identities=20% Similarity=0.327 Sum_probs=119.3
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEc
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFI 98 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 98 (461)
.+.+.|++++++++ .+|..+. ++|+.|+|++|+|+ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45789999999999 6776553 58999999999999 5676554 58999999999999 5676553 57999999
Q ss_pred cCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCcccc-----------
Q 045177 99 QPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLG----------- 167 (461)
Q Consensus 99 ~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~----------- 167 (461)
++|.+. .+|..+. .+|+. +.+.-+.+.. +|.--..+|+.|+|++|+++. +|..+.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~------L~Ls~N~L~~----LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N 314 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQS------LDLFHNKISC----LPENLPEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSN 314 (754)
T ss_pred cCCccC-cCChhHh--CCCCE------EECcCCccCc----cccccCCCCcEEECCCCcccc-CcccchhhHHHHHhcCC
Confidence 999998 6776553 23333 2233222222 232111248888888888873 443322
Q ss_pred --------CCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccC
Q 045177 168 --------KMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230 (461)
Q Consensus 168 --------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~ 230 (461)
..++|+.|++++|.++ .+|..+. ++|+.|+|++|+|+ .+|..+.+.|+.|+|++|+|+.
T Consensus 315 ~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 315 SLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALTN 381 (754)
T ss_pred ccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCCC
Confidence 1134455555555554 2343332 45666666666666 4555555566666666666664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1.1e-15 Score=161.79 Aligned_cols=217 Identities=25% Similarity=0.285 Sum_probs=115.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhC---------------
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAK--------------- 65 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--------------- 65 (461)
||+.|+|+ .+|..+. ++|+.|++++|+|+ .+|. .+++|++|+|++|+|+ .+|.....
T Consensus 207 dLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 207 NVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 278 (788)
T ss_pred EcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhh
Confidence 46778887 4666664 36788888888887 4553 2467788888888777 34432110
Q ss_pred --CCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccc-------cccc----cceeeeecccC
Q 045177 66 --LTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKF-------NGLV----CMVFLFLRISD 132 (461)
Q Consensus 66 --l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~----~l~~~~l~~~~ 132 (461)
.++|+.|+|++|+++ .+|. .+++|+.|++++|++.+ +|.....+..| ..++ .|+.+++.-+.
T Consensus 279 ~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~ 353 (788)
T PRK15387 279 ALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ 353 (788)
T ss_pred hchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCc
Confidence 123445555555555 2332 23578888888887774 34322222111 0000 11111111111
Q ss_pred CCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCc
Q 045177 133 LNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP 212 (461)
Q Consensus 133 l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 212 (461)
+.. +|.+ ..+|+.|++++|.|+ .+|.. ..+|+.|+|++|+|+ .+|.. .++|+.|++++|+|+ .+|.
T Consensus 354 Ls~----LP~l-p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~ 419 (788)
T PRK15387 354 LAS----LPTL-PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPM 419 (788)
T ss_pred cCC----CCCC-Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCc
Confidence 111 1111 012444444444444 23321 235667777777776 34432 246777777777777 4554
Q ss_pred cccccCCccccccCcccCCCCcccccccccceee
Q 045177 213 WMLEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 213 ~~~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
. ...++.|+|++|+|+. +|..+|.+..+..++
T Consensus 420 l-~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 420 L-PSGLLSLSVYRNQLTR-LPESLIHLSSETTVN 451 (788)
T ss_pred c-hhhhhhhhhccCcccc-cChHHhhccCCCeEE
Confidence 2 3456778888888774 677776666555443
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=7.8e-15 Score=165.75 Aligned_cols=228 Identities=19% Similarity=0.283 Sum_probs=129.8
Q ss_pred CchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccC
Q 045177 11 IPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNW 90 (461)
Q Consensus 11 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 90 (461)
+|..| .+.+|+.|++++|++. .++..+..+++|+.|+|+++...+.+|. +..+++|+.|+|++|.....+|..+..+
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhcc
Confidence 34444 3466777777777766 5566666777777777776654435553 6667777777777766555677777777
Q ss_pred CCCcEEEccCCCCccCCCCccccccccccccc---------------ceeeeecccCCCCCCCC----------------
Q 045177 91 TKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVC---------------MVFLFLRISDLNGPEAT---------------- 139 (461)
Q Consensus 91 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~---------------l~~~~l~~~~l~~~~~~---------------- 139 (461)
++|+.|++++|.....+|..+ ++++|+.|.. ++.+.+.-+.+..+...
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKS 759 (1153)
T ss_pred CCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccch
Confidence 777777777765555566543 3333332110 11111111110000000
Q ss_pred ---------Ccc---cCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCC
Q 045177 140 ---------FPQ---LGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 140 ---------~~~---l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 207 (461)
++. ....+|+.|+|++|.....+|..++++++|+.|+|++|..-+.+|..+ .+++|+.|+|++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 000 011237777777776666777777778888888887765433566554 5667777777776544
Q ss_pred CCCCccccccCCccccccCcccCCCCccccccccccee
Q 045177 208 GAIPPWMLEKGDKIDLSYNNFTDGSAESSCQKRSVNLF 245 (461)
Q Consensus 208 ~~~p~~~~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~ 245 (461)
..+|. +..+++.|+|++|.++. +|.++..+..|..+
T Consensus 839 ~~~p~-~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L 874 (1153)
T PLN03210 839 RTFPD-ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFL 874 (1153)
T ss_pred ccccc-cccccCEeECCCCCCcc-ChHHHhcCCCCCEE
Confidence 34443 23566777777777764 56555444444433
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=2.4e-15 Score=159.30 Aligned_cols=201 Identities=24% Similarity=0.334 Sum_probs=131.0
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcC-----------------CCCCCEEEccCCcCCCCchhhhh
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGS-----------------LLNLEKLHLSSNNFTGELPKTFA 64 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-----------------l~~L~~L~Ls~N~l~~~~p~~~~ 64 (461)
|+.|+|+. +|. .+++|+.|+|++|+|+ .+|..+.+ .++|+.|+|++|+++ .+|.
T Consensus 229 L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~--- 299 (788)
T PRK15387 229 IPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV--- 299 (788)
T ss_pred ccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---
Confidence 56777775 443 2577888888888887 44432211 123455555555555 3343
Q ss_pred CCCCcCEEEeeCCcCCCCCchhh---cc----------C----CCCcEEEccCCCCccCCCCcccccccccccccceeee
Q 045177 65 KLTNMKDFRIGDNQFTGQIPSFI---QN----------W----TKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLF 127 (461)
Q Consensus 65 ~l~~L~~L~Ls~N~l~~~~p~~~---~~----------l----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~ 127 (461)
.+++|+.|+|++|++++ +|... .. + .+|+.|+|++|++. .+|....+ |+. +.
T Consensus 300 ~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~---L~~------L~ 368 (788)
T PRK15387 300 LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSE---LYK------LW 368 (788)
T ss_pred cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcc---cce------eh
Confidence 23689999999999885 33211 11 1 25777777777776 34443222 222 11
Q ss_pred ecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCC
Q 045177 128 LRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 128 l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 207 (461)
+.-+.+. .+|.+. .+|+.|+|++|.|+ .+|.. .++|+.|++++|+|+ .+|.. ..+|+.|+|++|+|+
T Consensus 369 Ls~N~L~----~LP~l~-~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 369 AYNNRLT----SLPALP-SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred hhccccc----cCcccc-cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc
Confidence 2222222 233321 34999999999999 46653 368999999999999 46753 357889999999999
Q ss_pred CCCCccc--cccCCccccccCcccCCCCccc
Q 045177 208 GAIPPWM--LEKGDKIDLSYNNFTDGSAESS 236 (461)
Q Consensus 208 ~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~ 236 (461)
.+|..+ +..++.|+|++|+|++..|..+
T Consensus 436 -~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 436 -RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 788877 5678899999999998776644
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=1e-14 Score=164.88 Aligned_cols=224 Identities=22% Similarity=0.264 Sum_probs=149.7
Q ss_pred CCCchhhhcCC-CCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhh
Q 045177 9 GPIPKYLANIS-TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFI 87 (461)
Q Consensus 9 ~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 87 (461)
..+|..|..++ +|+.|++.++.+. .+|..| ...+|++|+|++|++. .+|..+..+++|+.|+|+++.....+|. +
T Consensus 578 ~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l 653 (1153)
T PLN03210 578 WHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-L 653 (1153)
T ss_pred eecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-c
Confidence 34555565553 4777777777766 566655 5678999999999988 6787888999999999998765556664 7
Q ss_pred ccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCC----------------------CCCcccCC
Q 045177 88 QNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPE----------------------ATFPQLGN 145 (461)
Q Consensus 88 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~----------------------~~~~~l~~ 145 (461)
..+++|+.|+|++|.....+|..+..+.+|+. +.+.++.... ..+|.+ .
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~--------L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-~ 724 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLED--------LDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-S 724 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCE--------EeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc-c
Confidence 88999999999998877788988887777666 3333322111 111111 1
Q ss_pred ccccEEEcccCcccccCCccc------------------------------cCCCcccEEeccCCcccCCCCccccCCCC
Q 045177 146 KKMTNLILRNCNITGELPPYL------------------------------GKMTTLKVLDLSFNKLSGHIPSNFDDLYE 195 (461)
Q Consensus 146 ~~L~~L~L~~n~l~~~~~~~~------------------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 195 (461)
.+|++|+|++|.+. .+|..+ ...++|+.|+|++|.....+|..+..+++
T Consensus 725 ~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~ 803 (1153)
T PLN03210 725 TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK 803 (1153)
T ss_pred CCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence 12566666666655 333321 01246777777777766677888888888
Q ss_pred CCEEEccCCcCCCCCCccc-cccCCccccccCcccCCCCcccccccccceee
Q 045177 196 VDYIYFTGNLLTGAIPPWM-LEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 196 L~~L~L~~N~l~~~~p~~~-~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
|+.|+|++|.....+|..+ +++|+.|+|++|.....+|.....+..|.+..
T Consensus 804 L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 804 LEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred CCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCC
Confidence 8888888875444666655 56778888888766555665444444444433
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=3.5e-17 Score=154.57 Aligned_cols=222 Identities=16% Similarity=0.166 Sum_probs=146.2
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeC-CcCCCCCchhhccCCCCcEEE
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGD-NQFTGQIPSFIQNWTKLEKLF 97 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 97 (461)
+..+.++|..|+|+.+.|++|+.+++|+.|||++|.|+.+-|++|.++++|..|-+-+ |+|+......|.++..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3567899999999988888999999999999999999989999999999988877755 999977777999999999999
Q ss_pred ccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccc------------ccCCc
Q 045177 98 IQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNIT------------GELPP 164 (461)
Q Consensus 98 L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~------------~~~~~ 164 (461)
+.-|++.-.....+..+.++..|. +.-+.+..+.. -.+.... ++.+.+..|.+- ...|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLs------lyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLS------LYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhc------ccchhhhhhcc--ccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 999998755555555555554311 11111111100 0111222 555666555411 11222
Q ss_pred cccCCCcccEEeccC-------------------------CcccCCCC-ccccCCCCCCEEEccCCcCCCCCCccc--cc
Q 045177 165 YLGKMTTLKVLDLSF-------------------------NKLSGHIP-SNFDDLYEVDYIYFTGNLLTGAIPPWM--LE 216 (461)
Q Consensus 165 ~~~~l~~L~~L~Ls~-------------------------N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~ 216 (461)
.++.........+.. +...++.| ..|..+++|+.|+|++|+|+..-+.+| ..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 222222111111111 11222222 368889999999999999998888888 66
Q ss_pred cCCccccccCcccCCCCcc---cccccccceeecc
Q 045177 217 KGDKIDLSYNNFTDGSAES---SCQKRSVNLFASF 248 (461)
Q Consensus 217 ~l~~LdLs~N~l~~~~p~~---~c~~~~l~~~~~~ 248 (461)
.+++|.|..|++....... .-.++.|.+.++-
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 7899999999987533222 2344445555543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=2.8e-17 Score=169.71 Aligned_cols=204 Identities=25% Similarity=0.375 Sum_probs=106.3
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEc
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFI 98 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 98 (461)
.+|+++++++|+++ .+|+.++.+.+|+.|+..+|++. .+|..+..+.+|+.|.+..|.+. .+|.....++.|++|+|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 45666666666666 45566666666666666666665 55666666666666666666666 55555666666666666
Q ss_pred cCCCCccCCCCccccccc------------ccccccc------eeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccc
Q 045177 99 QPSGLVGPIPSGIFSLEK------------FNGLVCM------VFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNIT 159 (461)
Q Consensus 99 ~~n~l~~~~p~~~~~l~~------------L~~L~~l------~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~ 159 (461)
..|++. .+|+.+..... +..+++. ....+.+.+.......+|.+.... |+.|+|++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 666664 33332211000 0000000 000122222122223344433333 666666666665
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCc----------------------cccCCCCCCEEEccCCcCCC-CCCcccc-
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPS----------------------NFDDLYEVDYIYFTGNLLTG-AIPPWML- 215 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----------------------~l~~l~~L~~L~L~~N~l~~-~~p~~~~- 215 (461)
......+.++..|++|+||+|+++ .+|. .+..+++|+.+||+.|.|+. .+|....
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 333344555566666666666655 3333 44555666666666666652 3333333
Q ss_pred ccCCccccccCc
Q 045177 216 EKGDKIDLSYNN 227 (461)
Q Consensus 216 ~~l~~LdLs~N~ 227 (461)
++|++|||++|.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 566666666665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=1.6e-15 Score=148.26 Aligned_cols=227 Identities=22% Similarity=0.247 Sum_probs=135.0
Q ss_pred CCCCCcCC-CCCchhhhcCCCCcEEeeccccCCCC----CchhhcCCCCCCEEEccCCcCCC------CchhhhhCCCCc
Q 045177 1 SLLANRLT-GPIPKYLANISTLVNLTVQYNQFSGE----LPEELGSLLNLEKLHLSSNNFTG------ELPKTFAKLTNM 69 (461)
Q Consensus 1 ~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l~~L 69 (461)
+|..++++ ......|..+..|+.|+++++.++.. ++..+...++|++|+++++.+.+ .++..+..+++|
T Consensus 4 ~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L 83 (319)
T cd00116 4 SLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGL 83 (319)
T ss_pred ccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCce
Confidence 45666776 44556667777788888888887532 44556667778888888877762 234556777788
Q ss_pred CEEEeeCCcCCCCCchhhccCCC---CcEEEccCCCCccCCCCccccccccccc-ccceeeeecccCCCCCC-CCCc-cc
Q 045177 70 KDFRIGDNQFTGQIPSFIQNWTK---LEKLFIQPSGLVGPIPSGIFSLEKFNGL-VCMVFLFLRISDLNGPE-ATFP-QL 143 (461)
Q Consensus 70 ~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~p~~~~~l~~L~~L-~~l~~~~l~~~~l~~~~-~~~~-~l 143 (461)
+.|++++|.+....+..+..+.+ |++|++++|.+.......+. ..+..+ ..++.+++.-..+.... ..+. .+
T Consensus 84 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~--~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA--KGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred eEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH--HHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 88888888887656666655555 88888888877631111110 111111 22222222222221100 0011 12
Q ss_pred CC-ccccEEEcccCccccc----CCccccCCCcccEEeccCCcccCC----CCccccCCCCCCEEEccCCcCCCCCCccc
Q 045177 144 GN-KKMTNLILRNCNITGE----LPPYLGKMTTLKVLDLSFNKLSGH----IPSNFDDLYEVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 144 ~~-~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 214 (461)
.. .+|++|+|++|.+++. ++..+..+++|+.|+|++|.+++. +...+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 22 2388888888887742 233345556888888888887643 33445567778888888888775222222
Q ss_pred -------cccCCccccccCccc
Q 045177 215 -------LEKGDKIDLSYNNFT 229 (461)
Q Consensus 215 -------~~~l~~LdLs~N~l~ 229 (461)
...|+.|++++|.++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHhccCCCceEEEccCCCCC
Confidence 146778888888876
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=8.5e-16 Score=158.89 Aligned_cols=191 Identities=27% Similarity=0.333 Sum_probs=141.0
Q ss_pred CCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEE
Q 045177 18 ISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLF 97 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 97 (461)
-++|+.|+.++|.++...+. .--.+|+++++++|+++ .+|+++..+.+|+.|...+|+++ .+|..+..+++|+.|.
T Consensus 218 g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred CcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 36677888888888733221 22358999999999999 77899999999999999999997 8899999999999999
Q ss_pred ccCCCCccCCCCcccccccccccccce------------eeeecccCCCCC---CCCCcccC---CccccEEEcccCccc
Q 045177 98 IQPSGLVGPIPSGIFSLEKFNGLVCMV------------FLFLRISDLNGP---EATFPQLG---NKKMTNLILRNCNIT 159 (461)
Q Consensus 98 L~~n~l~~~~p~~~~~l~~L~~L~~l~------------~~~l~~~~l~~~---~~~~~~l~---~~~L~~L~L~~n~l~ 159 (461)
+..|.+. -+|+....++.|+.|..-+ .....++.++.. ....|..+ ...|+.|.+.+|.++
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 9999998 5666666555555532110 000111111111 11122221 223889999999999
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 214 (461)
+..-..+.++++|+.|+|++|+|.......+.++..|+.|+|++|+++ .+|..+
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 887778899999999999999999555556788999999999999998 666543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=2.6e-15 Score=146.77 Aligned_cols=228 Identities=20% Similarity=0.218 Sum_probs=150.9
Q ss_pred CCCCcCCCC----CchhhhcCCCCcEEeeccccCCC------CCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCC---
Q 045177 2 LLANRLTGP----IPKYLANISTLVNLTVQYNQFSG------ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTN--- 68 (461)
Q Consensus 2 Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--- 68 (461)
|+++.++.. ++..+...+.|+.|+++++.+.+ .++..+..+++|++|++++|.+....+..+..+.+
T Consensus 30 l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 109 (319)
T cd00116 30 LEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSS 109 (319)
T ss_pred ecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCc
Confidence 556666433 55566778889999999988872 23456778889999999999998667777766665
Q ss_pred cCEEEeeCCcCCC----CCchhhccC-CCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCC-CCCc-
Q 045177 69 MKDFRIGDNQFTG----QIPSFIQNW-TKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPE-ATFP- 141 (461)
Q Consensus 69 L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~-~~~~- 141 (461)
|++|++++|+++. .+...+..+ ++|+.|++++|.+++.....+. ..+..+..++.+.+.-+.+.... ..++
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA--KALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH--HHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 9999999999873 233456667 8999999999998743222111 11112222222223322222100 0111
Q ss_pred ccC-CccccEEEcccCccccc----CCccccCCCcccEEeccCCcccCCCCcccc-----CCCCCCEEEccCCcCCCCCC
Q 045177 142 QLG-NKKMTNLILRNCNITGE----LPPYLGKMTTLKVLDLSFNKLSGHIPSNFD-----DLYEVDYIYFTGNLLTGAIP 211 (461)
Q Consensus 142 ~l~-~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~p 211 (461)
.+. ..+|++|+|++|.+++. +...+..+++|+.|++++|.+++.....+. ..+.|++|++++|.+++...
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 122 23599999999998743 344566789999999999999853332222 24789999999999973222
Q ss_pred c----cc--cccCCccccccCcccCC
Q 045177 212 P----WM--LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 212 ~----~~--~~~l~~LdLs~N~l~~~ 231 (461)
. .+ .+.++.+++++|.++..
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHH
Confidence 1 11 35788999999999865
No 25
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.49 E-value=1.6e-13 Score=134.83 Aligned_cols=158 Identities=24% Similarity=0.372 Sum_probs=103.1
Q ss_pred cceecccCCCe--eeecCCeeeecCCCCCCCceeeecCCceEEe-eeeeccCCCCCCCceeEeccccccCCchhhhhhhc
Q 045177 272 YSLHINCGGSE--VTANGDTAFEEDTYEAGPSTFTLSRTNWGLS-STGHFLDNSIKTDTYIQTNTSRLLMSDSQLYTNAR 348 (461)
Q Consensus 272 ~~~~i~~gg~~--~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ly~t~r 348 (461)
.-+|+|+||.. ++..+|. |+|-|.... ....|... ....+. . .........+.++|+|||
T Consensus 179 ~~~R~n~G~~~~~iryp~D~-~dR~W~~~~------~~~~~~~ist~~~i~-~---------~~~~~~~~~P~~V~~TA~ 241 (347)
T PF12819_consen 179 TVYRLNVGGSSSFIRYPDDT-YDRIWQPYS------SSPGWSNISTTSNIN-I---------NSSNNPYDAPSAVYQTAR 241 (347)
T ss_pred EEEeecCCCcccccCCCCCc-ceeeccccc------cCccccccccceeee-c---------ccCCccCcChHHHHHhhh
Confidence 35899999998 7777887 999997221 01122221 112221 0 001112234567899998
Q ss_pred cCCCcc----ccccccccCc-cEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEE
Q 045177 349 LSAISL----TYYGFCLGNG-NYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSA 423 (461)
Q Consensus 349 ~~~~~~----~~~~~~~~~G-~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v 423 (461)
...... ..+.+ +.++ .|.|||||||+.... ...++|+|+|||||+.+.++++... .++...+++++|.+
T Consensus 242 ~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~----~~~~~R~F~IyiN~~~~~~~~~~~~-~~~~~~~~~~d~~~ 315 (347)
T PF12819_consen 242 TPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLS----PNNNQREFDIYINGQTAYSDVSPPY-LGADTVPYYSDYVV 315 (347)
T ss_pred cccccccceEEEecc-CCCCccEEEEEEEeeccccc----CCCCeEEEEEEECCeEccCccCccc-ccCcceEeecceEE
Confidence 654321 12344 4444 799999999998632 3456899999999999988666533 23556788999999
Q ss_pred EEeC-CeEEEEEEEcCCcceeccCCCcccCeeeeEEec
Q 045177 424 AVTN-GTMEIRLYWAGKGTTEIPFKGDYGPLISAISLN 460 (461)
Q Consensus 424 ~v~~-~~l~i~f~~~~~g~~~~p~~~~~~~~i~ai~v~ 460 (461)
.+++ +.+.|++..+.. ..+.|+++|+||+
T Consensus 316 ~~~~~~~~~isL~~t~~--------S~lppiLNalEIy 345 (347)
T PF12819_consen 316 NVPDSGFLNISLGPTPD--------STLPPILNALEIY 345 (347)
T ss_pred EecCCCEEEEEEEeCCC--------CCcCceeEeeeeE
Confidence 9976 578999983221 1347999999997
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.48 E-value=1.8e-15 Score=149.07 Aligned_cols=176 Identities=27% Similarity=0.428 Sum_probs=81.9
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
-...||+.|++. .+|..+..+..|+.|.|..|.+. .+|..+.++..|++|+|+.|+++ .+|..+..|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 334455555555 45555555555555555555555 44555555555555555555555 4444444442 45555555
Q ss_pred CCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCcccccCCccccCCCcccEEeccC
Q 045177 101 SGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLSF 179 (461)
Q Consensus 101 n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 179 (461)
|+++ .+|+.++-+..|.. +..+. +.+....+.+.... |+.|.++.|++. .+|..+..+ .|..||+|.
T Consensus 153 Nkl~-~lp~~ig~~~tl~~--------ld~s~-nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAH--------LDVSK-NEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred Cccc-cCCcccccchhHHH--------hhhhh-hhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 5554 34444432222211 00000 00000000111111 344555555555 344444433 356666666
Q ss_pred CcccCCCCccccCCCCCCEEEccCCcCCCCCCccc
Q 045177 180 NKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 180 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 214 (461)
|+++ .+|-.|..|..|++|-|.+|.++ ..|..+
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 6666 56666666666666666666665 444444
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=4.4e-15 Score=146.35 Aligned_cols=205 Identities=23% Similarity=0.366 Sum_probs=160.3
Q ss_pred EEeeccccCCCCCchh-h-cCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 23 NLTVQYNQFSGELPEE-L-GSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 23 ~L~Ls~n~l~~~~p~~-~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
.|.|++-++. .+|.. . ..+.--...||+.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3566666666 33321 1 34556678899999999 89999999999999999999999 8899999999999999999
Q ss_pred CCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCC-ccccEEEcccCcccccCCccccCCCcccEEeccC
Q 045177 101 SGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGN-KKMTNLILRNCNITGELPPYLGKMTTLKVLDLSF 179 (461)
Q Consensus 101 n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 179 (461)
|+++ .+|..++.+. | +.+.+.-+.+... .+.++. .+|..|+.+.|.+. .+|..++.+.+|+.|.+..
T Consensus 131 NqlS-~lp~~lC~lp-L------kvli~sNNkl~~l---p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLP-L------KVLIVSNNKLTSL---PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred chhh-cCChhhhcCc-c------eeEEEecCccccC---CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence 9998 7888777653 1 1222222222222 222333 33888999999998 7888899999999999999
Q ss_pred CcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccceee
Q 045177 180 NKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 180 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
|++. .+|+.+..+ .|..||++.|+++ .+|..| ++.|++|-|.+|.+.. .|..+|-..++.++-
T Consensus 199 n~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 199 NHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFK 263 (722)
T ss_pred hhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeee
Confidence 9998 677777755 5899999999999 899988 7789999999999987 577889888887765
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=1.6e-12 Score=130.98 Aligned_cols=181 Identities=25% Similarity=0.425 Sum_probs=109.1
Q ss_pred cCCCCcEEeeccccCCCCCchhhcCCC-CCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcE
Q 045177 17 NISTLVNLTVQYNQFSGELPEELGSLL-NLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEK 95 (461)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 95 (461)
.++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|.....+++|+.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 3445555555555555 3344444442 5555555555555 34444555555555555555555 33443334555555
Q ss_pred EEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCcccccCCccccCCCcccE
Q 045177 96 LFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNITGELPPYLGKMTTLKV 174 (461)
Q Consensus 96 L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~ 174 (461)
|++++|++. .+|..+ .... |++|.+++|.+. ..+..+.++.++..
T Consensus 191 L~ls~N~i~-~l~~~~--------------------------------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~ 236 (394)
T COG4886 191 LDLSGNKIS-DLPPEI--------------------------------ELLSALEELDLSNNSII-ELLSSLSNLKNLSG 236 (394)
T ss_pred eeccCCccc-cCchhh--------------------------------hhhhhhhhhhhcCCcce-ecchhhhhcccccc
Confidence 555555554 222221 1233 777888888544 45566778888888
Q ss_pred EeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCCcc
Q 045177 175 LDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAES 235 (461)
Q Consensus 175 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~~ 235 (461)
|.+++|++. ..+..+..+++++.|++++|.++...+..-..+++.|++++|.++...|..
T Consensus 237 l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 237 LELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence 888888887 446777788888888888888884433222567778888888888776653
No 29
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=99.30 E-value=1.7e-12 Score=117.22 Aligned_cols=134 Identities=27% Similarity=0.448 Sum_probs=99.2
Q ss_pred cceecccCCCeeeecCCeeeecCCCCC-CCceeeecCCceEEeeeeeccCCCCCCCce--eEeccccccCCchhhhhhhc
Q 045177 272 YSLHINCGGSEVTANGDTAFEEDTYEA-GPSTFTLSRTNWGLSSTGHFLDNSIKTDTY--IQTNTSRLLMSDSQLYTNAR 348 (461)
Q Consensus 272 ~~~~i~~gg~~~~~~~~~~~~~d~~~~-g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~ly~t~r 348 (461)
.-++|||||++.....+..|..|-... |-++ .| ...-..+....|..+|+|+|
T Consensus 60 vI~aVncGgdaavd~ygI~f~aD~~~~VGras------------------------d~G~~l~i~~raeeed~ily~ter 115 (355)
T KOG3593|consen 60 VIPAVNCGGDAAVDNYGIRFAADPLEGVGRAS------------------------DYGMVLGIGCRAEEEDIILYQTER 115 (355)
T ss_pred hhheeccCChhhhcccceEeeccccccccccC------------------------CccceeeccccCChhhhhhhhhcc
Confidence 568899999999877777788775433 3221 11 11122344556778999999
Q ss_pred cCCCccccccccccCccEEEEEEeEeeeecCCCCccCCCcceeEEEEC-CEEEeecCccccccCCcceEEEEEEEE----
Q 045177 349 LSAISLTYYGFCLGNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQ-GNLVLKDLNIENEAGGVGKAIVKPFSA---- 423 (461)
Q Consensus 349 ~~~~~~~~~~~~~~~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~-~~~~~~~fdi~~~~~~~~~~~~~~~~v---- 423 (461)
+....+.|-.....+|.|.+.|.|||.+| ...++.+|||.+| +..+++++||+.++|+.+.|...-..+
T Consensus 116 ~neetFgyd~pik~dgdyalvlkfaevyF------~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~ 189 (355)
T KOG3593|consen 116 YNEETFGYDVPIKEDGDYALVLKFAEVYF------KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQ 189 (355)
T ss_pred cchhhhcccccccCCCceehhhhHHHHHH------HhhhhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcC
Confidence 99888775444445899999999999999 6678999999999 999999999999998787775422211
Q ss_pred -------E---EeCCeEEEEEE
Q 045177 424 -------A---VTNGTMEIRLY 435 (461)
Q Consensus 424 -------~---v~~~~l~i~f~ 435 (461)
. ++.|+|.|+|.
T Consensus 190 gkls~~gess~~t~gkl~le~~ 211 (355)
T KOG3593|consen 190 GKLSVCGESSISTLGKLNLEFL 211 (355)
T ss_pred ceEEEEeeeEEeecceEEEEee
Confidence 1 34588999998
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=7.9e-12 Score=126.02 Aligned_cols=175 Identities=30% Similarity=0.522 Sum_probs=137.6
Q ss_pred CCCCCcCCCCCchhhhcCC-CCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC
Q 045177 1 SLLANRLTGPIPKYLANIS-TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 79 (461)
++..|+++. +|.....++ +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|.....+++|+.|++++|++
T Consensus 122 ~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 122 DLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred ecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcc
Confidence 356777774 555566674 9999999999999 67677999999999999999999 6777666899999999999999
Q ss_pred CCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccc
Q 045177 80 TGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNIT 159 (461)
Q Consensus 80 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~ 159 (461)
. .+|.....+..|++|.+++|.+. ..+..+..+.. +..|.+.+|++.
T Consensus 199 ~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~-------------------------------l~~l~l~~n~~~ 245 (394)
T COG4886 199 S-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN-------------------------------LSGLELSNNKLE 245 (394)
T ss_pred c-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc-------------------------------ccccccCCceee
Confidence 9 77777767778999999999643 23333333222 344557777776
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 214 (461)
.++..+..+++|+.|++++|+++ .++. +..+.+++.|++++|.+....|...
T Consensus 246 -~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 246 -DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred -eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 44677888889999999999999 4444 8889999999999999997666554
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=3e-11 Score=127.97 Aligned_cols=94 Identities=23% Similarity=0.485 Sum_probs=84.3
Q ss_pred CCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEcc
Q 045177 20 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQ 99 (461)
Q Consensus 20 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 99 (461)
.++.|+|++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999999998999999999999999999999998899889999999999999999998999999999999999999
Q ss_pred CCCCccCCCCcccc
Q 045177 100 PSGLVGPIPSGIFS 113 (461)
Q Consensus 100 ~n~l~~~~p~~~~~ 113 (461)
+|++.+.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999888887764
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2.2e-10 Score=100.64 Aligned_cols=85 Identities=28% Similarity=0.451 Sum_probs=26.7
Q ss_pred hhcCCCCcEEeeccccCCCCCchhhc-CCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhh-ccCCC
Q 045177 15 LANISTLVNLTVQYNQFSGELPEELG-SLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFI-QNWTK 92 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~ 92 (461)
+.+..+++.|+|++|.|+. +. .++ .+.+|+.|+|++|.|+ .++ .+..+++|++|++++|+|+. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 3455678889999999883 32 455 5788999999999998 444 37788899999999999984 43334 46888
Q ss_pred CcEEEccCCCCc
Q 045177 93 LEKLFIQPSGLV 104 (461)
Q Consensus 93 L~~L~L~~n~l~ 104 (461)
|++|++++|+|.
T Consensus 90 L~~L~L~~N~I~ 101 (175)
T PF14580_consen 90 LQELYLSNNKIS 101 (175)
T ss_dssp --EEE-TTS---
T ss_pred CCEEECcCCcCC
Confidence 999999988886
No 33
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.97 E-value=3.1e-09 Score=104.61 Aligned_cols=109 Identities=32% Similarity=0.473 Sum_probs=73.5
Q ss_pred CchhhhhhhccCCCc-ccccccccc-C--ccEEEEEEeEeeeecCCCCcc-CCCcceeEEEECCEEEeecCccccccCCc
Q 045177 339 SDSQLYTNARLSAIS-LTYYGFCLG-N--GNYTVKLHFAEILFTDDKNFS-SFGKRIFDVYIQGNLVLKDLNIENEAGGV 413 (461)
Q Consensus 339 ~~~~ly~t~r~~~~~-~~~~~~~~~-~--G~y~v~L~F~e~~~~~~~~~~-~~~~r~F~v~~~~~~~~~~fdi~~~~~~~ 413 (461)
....+|+|+|+++.. -.-|.+++. + |+|+|||||....+... ... ....-.||+++++.... ..++.. ..
T Consensus 46 ~~~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliRl~F~~gnyd~~-~fs~~~~~~~FdL~~~~n~~~-tV~~~~---~~ 120 (347)
T PF12819_consen 46 DSSPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIRLHFYYGNYDGL-NFSVSSSPPTFDLLLGFNFWS-TVNLSN---SP 120 (347)
T ss_pred ccccccceEEEcCCCCccEEEeeccCCCCceEEEEEEecccccccc-ccccccCCcceEEEECCceeE-EEEecC---CC
Confidence 336789999999832 233688765 3 39999999998776311 000 01244688888876541 122211 11
Q ss_pred ceEEEEEEEEEEe-CCeEEEEEEEcCCcceeccCCCcccCeeeeEEecC
Q 045177 414 GKAIVKPFSAAVT-NGTMEIRLYWAGKGTTEIPFKGDYGPLISAISLNP 461 (461)
Q Consensus 414 ~~~~~~~~~v~v~-~~~l~i~f~~~~~g~~~~p~~~~~~~~i~ai~v~~ 461 (461)
..+++|||.+.|+ ++.|.|.|...++ |.| |+||||||.|
T Consensus 121 ~~~~~~E~ii~v~~~~~l~vclv~~~~--------g~~-pFIsaiEl~~ 160 (347)
T PF12819_consen 121 SSPVVKEFIINVTWSDTLSVCLVPTGS--------GTF-PFISAIELRP 160 (347)
T ss_pred cceEEEEEEEEEcCCCcEEEEEEeCCC--------CCC-CceeEEEEEE
Confidence 2579999999998 6999999995554 444 9999999986
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.3e-10 Score=110.25 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=130.7
Q ss_pred hcCCCCcEEeeccccCCCCCc--hhhcCCCCCCEEEccCCcCCCCc--hhhhhCCCCcCEEEeeCCcCCCCCch-hhccC
Q 045177 16 ANISTLVNLTVQYNQFSGELP--EELGSLLNLEKLHLSSNNFTGEL--PKTFAKLTNMKDFRIGDNQFTGQIPS-FIQNW 90 (461)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l 90 (461)
+++++|+...|.+..+. ..+ +....+++++.|||+.|-+.... -.....||+|+.|+|+.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56788899999888877 333 35678899999999999887433 24466889999999999988632221 11256
Q ss_pred CCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccC-CccccCC
Q 045177 91 TKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGEL-PPYLGKM 169 (461)
Q Consensus 91 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~-~~~~~~l 169 (461)
+.|+.|.|+.|.++.. .+. .-+...+.+..+++..+. .......+.--...|+.|+|++|++-... -...+.+
T Consensus 197 ~~lK~L~l~~CGls~k---~V~--~~~~~fPsl~~L~L~~N~-~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK---DVQ--WILLTFPSLEVLYLEANE-IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCCCCHH---HHH--HHHHhCCcHHHhhhhccc-ccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence 7888999999888621 111 111112222222333332 11111111111133888999988877432 1345678
Q ss_pred CcccEEeccCCcccCC-CCcc-----ccCCCCCCEEEccCCcCCCC--CCc-cccccCCccccccCcccCC
Q 045177 170 TTLKVLDLSFNKLSGH-IPSN-----FDDLYEVDYIYFTGNLLTGA--IPP-WMLEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 170 ~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~--~p~-~~~~~l~~LdLs~N~l~~~ 231 (461)
+.|+.|.++.+.|+.. .|+. ...+++|++|+++.|+|... +-. ...++++.|....|.|+.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 8888888988888743 2332 34577899999999998521 111 1256677888888888754
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.6e-10 Score=106.24 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=105.6
Q ss_pred CCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCccc
Q 045177 33 GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIF 112 (461)
Q Consensus 33 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 112 (461)
|..-..+.....|+.||||+|.|+ .+.++..-+|.++.|++++|.+.. + +.++.+++|+.|+|++|.++. +..+-.
T Consensus 274 G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~ 349 (490)
T KOG1259|consen 274 GSALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAE-CVGWHL 349 (490)
T ss_pred CceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHh-hhhhHh
Confidence 333334555678999999999999 778888888999999999999983 3 338889999999999998762 111111
Q ss_pred ccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCC-CCcccc
Q 045177 113 SLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGH-IPSNFD 191 (461)
Q Consensus 113 ~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~ 191 (461)
.+ -+++.|.|+.|.|.. + +.+.++-+|..||+++|+|... --..++
T Consensus 350 KL-------------------------------GNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG 396 (490)
T KOG1259|consen 350 KL-------------------------------GNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIG 396 (490)
T ss_pred hh-------------------------------cCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccc
Confidence 11 226778899998863 2 3467778899999999999732 234678
Q ss_pred CCCCCCEEEccCCcCCCCCCc
Q 045177 192 DLYEVDYIYFTGNLLTGAIPP 212 (461)
Q Consensus 192 ~l~~L~~L~L~~N~l~~~~p~ 212 (461)
++|.|+.|.|.+|.+. .+|+
T Consensus 397 ~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 397 NLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred cccHHHHHhhcCCCcc-ccch
Confidence 9999999999999998 4443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=1.4e-09 Score=95.45 Aligned_cols=100 Identities=21% Similarity=0.316 Sum_probs=43.8
Q ss_pred CCCCCcCCCCCchhhh-cCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhh-hCCCCcCEEEeeCCc
Q 045177 1 SLLANRLTGPIPKYLA-NISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTF-AKLTNMKDFRIGDNQ 78 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~ 78 (461)
+|.+|+|+.+- .++ .+.+|+.|+|++|.|+. ++ .+..+++|+.|++++|+|+. +++.+ ..+++|++|+|++|+
T Consensus 25 ~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 25 NLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp -------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS-
T ss_pred ccccccccccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCc
Confidence 57888887542 355 58899999999999994 43 58889999999999999994 44444 479999999999999
Q ss_pred CCCCC-chhhccCCCCcEEEccCCCCcc
Q 045177 79 FTGQI-PSFIQNWTKLEKLFIQPSGLVG 105 (461)
Q Consensus 79 l~~~~-p~~~~~l~~L~~L~L~~n~l~~ 105 (461)
|...- -..+..+++|+.|+|.+|.+..
T Consensus 100 I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 100 ISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCChHHhHHHHcCCCcceeeccCCcccc
Confidence 97432 2567889999999999999874
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=9.4e-10 Score=79.45 Aligned_cols=59 Identities=32% Similarity=0.548 Sum_probs=32.9
Q ss_pred CCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCc
Q 045177 20 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQ 78 (461)
Q Consensus 20 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 78 (461)
+|+.|++++|+++...++.|.++++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444555555555555555554
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=3.9e-10 Score=103.76 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=25.6
Q ss_pred ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCC
Q 045177 148 MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 207 (461)
|+.|+|++|.++ .+..|=.++-++++|.|+.|.|.. -+.+..+-+|..||+++|+|.
T Consensus 331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchh
Confidence 444555555544 333333344455555555555441 112333344555555555544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.1e-09 Score=79.02 Aligned_cols=61 Identities=31% Similarity=0.474 Sum_probs=56.3
Q ss_pred CCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCC
Q 045177 43 LNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGL 103 (461)
Q Consensus 43 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l 103 (461)
++|++|++++|+++...+..|.++++|++|++++|+++...+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5799999999999966667899999999999999999988888999999999999999975
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.4e-09 Score=118.10 Aligned_cols=220 Identities=16% Similarity=0.187 Sum_probs=130.0
Q ss_pred CCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchh
Q 045177 7 LTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSF 86 (461)
Q Consensus 7 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 86 (461)
+..+.+..|..|+.|++|||++|.--+.+|..++.|-+|++|+|++..+. .+|..+.+|+.|.+|++..+.-...+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 33344455788999999999988666688999999999999999999998 88888999999999999887766566777
Q ss_pred hccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcc-cCCcc-ccEEEcccCcccccCCc
Q 045177 87 IQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNKK-MTNLILRNCNITGELPP 164 (461)
Q Consensus 87 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~~-L~~L~L~~n~l~~~~~~ 164 (461)
...|++|++|.+...... .....+..++.|..|+.+....... .....+.. ....+ .+.+.+..+... ..+.
T Consensus 638 ~~~L~~Lr~L~l~~s~~~----~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~ 711 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALS----NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLIS 711 (889)
T ss_pred hhhcccccEEEeeccccc----cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeec
Confidence 777999999988765521 1122222333333333322322221 00000100 01111 233333333333 4455
Q ss_pred cccCCCcccEEeccCCcccCCCCccccC------CCCCCEEEccCCc-CCCCCCccccccCCccccccCcccCCCC
Q 045177 165 YLGKMTTLKVLDLSFNKLSGHIPSNFDD------LYEVDYIYFTGNL-LTGAIPPWMLEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 165 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~-l~~~~p~~~~~~l~~LdLs~N~l~~~~p 233 (461)
.+..+.+|+.|.+.++.+......+... ++++..+...++. .....+..+.++|+.|.+..+.....+.
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 6777888888888888876433322221 1122222222222 2222333457778888888776654443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.5e-09 Score=110.07 Aligned_cols=85 Identities=26% Similarity=0.321 Sum_probs=46.7
Q ss_pred hhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCc
Q 045177 15 LANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLE 94 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 94 (461)
+..+++|+.|++.+|+|.. +...+..+++|++|+|++|.|+...+ +..++.|+.|++++|.++.. ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhh
Confidence 4455666666666666652 22225556666666666666663322 44555566666666666522 2333456666
Q ss_pred EEEccCCCCc
Q 045177 95 KLFIQPSGLV 104 (461)
Q Consensus 95 ~L~L~~n~l~ 104 (461)
.+++++|.+.
T Consensus 166 ~l~l~~n~i~ 175 (414)
T KOG0531|consen 166 LLDLSYNRIV 175 (414)
T ss_pred cccCCcchhh
Confidence 6666666655
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.69 E-value=3.7e-09 Score=99.42 Aligned_cols=217 Identities=20% Similarity=0.238 Sum_probs=128.8
Q ss_pred hhhcCCCCcEEeeccccCCCC----CchhhcCCCCCCEEEccCCc---CCCCchh-------hhhCCCCcCEEEeeCCcC
Q 045177 14 YLANISTLVNLTVQYNQFSGE----LPEELGSLLNLEKLHLSSNN---FTGELPK-------TFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~---l~~~~p~-------~~~~l~~L~~L~Ls~N~l 79 (461)
.+..+..++.|+||+|.+... +...+.+.++|+..+++.-- +...+|+ ++...++|++|+||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345678889999999988633 34456677888888887532 2223443 345677899999999988
Q ss_pred CCCCc----hhhccCCCCcEEEccCCCCccCCCCcccc----cc---cccccccceeeeecccCCCCCCCCCc--ccCCc
Q 045177 80 TGQIP----SFIQNWTKLEKLFIQPSGLVGPIPSGIFS----LE---KFNGLVCMVFLFLRISDLNGPEATFP--QLGNK 146 (461)
Q Consensus 80 ~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----l~---~L~~L~~l~~~~l~~~~l~~~~~~~~--~l~~~ 146 (461)
....+ ..+.+++.|++|.|.+|.+...--..++. +. ....=+.|+.....-+.+.+.....- .+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 74444 34566788999999988875221111111 11 11111112222222222211111110 12222
Q ss_pred -cccEEEcccCccccc----CCccccCCCcccEEeccCCcccCC----CCccccCCCCCCEEEccCCcCCCCCCccc---
Q 045177 147 -KMTNLILRNCNITGE----LPPYLGKMTTLKVLDLSFNKLSGH----IPSNFDDLYEVDYIYFTGNLLTGAIPPWM--- 214 (461)
Q Consensus 147 -~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--- 214 (461)
.|+.+.+..|.|... +...+..++.|+.|||.+|-++.. +...+..+++|+.|++++|.+...-...+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 377788888777632 223466778888888888877632 34456667788888888888875433333
Q ss_pred ----cccCCccccccCcccC
Q 045177 215 ----LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 215 ----~~~l~~LdLs~N~l~~ 230 (461)
.+++++|+|.+|.++.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITR 284 (382)
T ss_pred HhccCCCCceeccCcchhHH
Confidence 4567788888888874
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7.9e-09 Score=99.83 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=128.2
Q ss_pred hhhhcCCCCcEEeeccccCCCC--CchhhcCCCCCCEEEccCCcCCCCchh-hhhCCCCcCEEEeeCCcCCCCC-chhhc
Q 045177 13 KYLANISTLVNLTVQYNQFSGE--LPEELGSLLNLEKLHLSSNNFTGELPK-TFAKLTNMKDFRIGDNQFTGQI-PSFIQ 88 (461)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~-p~~~~ 88 (461)
.....|++++.||||.|-+... +-.....|++|+.|+|+.|++.--... .-..++.|+.|.|+.|.++... ...+.
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 3567899999999999988743 234467899999999999999722211 1235789999999999998432 23456
Q ss_pred cCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCC-CcccCCcc-ccEEEcccCccccc-CCcc
Q 045177 89 NWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEAT-FPQLGNKK-MTNLILRNCNITGE-LPPY 165 (461)
Q Consensus 89 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~-~~~l~~~~-L~~L~L~~n~l~~~-~~~~ 165 (461)
.+|+|+.|+|..|.....-......++.|+. |++++.+.+... .+..+..+ |..|+++.|.+... .|+.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~--------LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQE--------LDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhh--------ccccCCcccccccccccccccchhhhhccccCcchhcCCCc
Confidence 7899999999999633222222333444554 455543333222 22333334 88889999988853 2332
Q ss_pred -----ccCCCcccEEeccCCcccCC-CCccccCCCCCCEEEccCCcCCCC
Q 045177 166 -----LGKMTTLKVLDLSFNKLSGH-IPSNFDDLYEVDYIYFTGNLLTGA 209 (461)
Q Consensus 166 -----~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ 209 (461)
...+++|+.|+++.|+|... --..+..+++|+.|.+..|.++-.
T Consensus 292 ~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 34678999999999999631 123455678889999999999743
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.67 E-value=2.7e-09 Score=100.32 Aligned_cols=227 Identities=20% Similarity=0.196 Sum_probs=132.0
Q ss_pred CCCCCcCCCC----CchhhhcCCCCcEEeecccc---CCCCCch-------hhcCCCCCCEEEccCCcCCCCchh----h
Q 045177 1 SLLANRLTGP----IPKYLANISTLVNLTVQYNQ---FSGELPE-------ELGSLLNLEKLHLSSNNFTGELPK----T 62 (461)
Q Consensus 1 ~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~---l~~~~p~-------~~~~l~~L~~L~Ls~N~l~~~~p~----~ 62 (461)
+|++|.+... +...+.+.+.|+..++|+-. +...+|+ .+...++|++|+||.|-+...-+. -
T Consensus 36 ~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~l 115 (382)
T KOG1909|consen 36 DLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEEL 115 (382)
T ss_pred eccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHH
Confidence 3566666443 33445566777777777532 1123333 334556788888888877633332 3
Q ss_pred hhCCCCcCEEEeeCCcCCCCCc-------------hhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeec
Q 045177 63 FAKLTNMKDFRIGDNQFTGQIP-------------SFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLR 129 (461)
Q Consensus 63 ~~~l~~L~~L~Ls~N~l~~~~p-------------~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~ 129 (461)
+..+..|++|.|.+|.+...-. .....-++|+.+...+|++...-...+. ..++..+.+.-..+.
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A--~~~~~~~~leevr~~ 193 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA--EAFQSHPTLEEVRLS 193 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH--HHHHhccccceEEEe
Confidence 4456777888887777752111 1223346777777777776522111111 111222222222233
Q ss_pred ccCCCCCCCC--CcccCCcc-ccEEEcccCccccc----CCccccCCCcccEEeccCCcccCCCCccc-----cCCCCCC
Q 045177 130 ISDLNGPEAT--FPQLGNKK-MTNLILRNCNITGE----LPPYLGKMTTLKVLDLSFNKLSGHIPSNF-----DDLYEVD 197 (461)
Q Consensus 130 ~~~l~~~~~~--~~~l~~~~-L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~ 197 (461)
.+.+...... ...+..++ |+.|+|++|-++.. +...+..++.|+.|++++|.+...-..+| ...+.|+
T Consensus 194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE 273 (382)
T ss_pred cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence 3332221111 11233344 99999999988843 44567788999999999999985433322 2368999
Q ss_pred EEEccCCcCCCCCCcc----c--cccCCccccccCccc
Q 045177 198 YIYFTGNLLTGAIPPW----M--LEKGDKIDLSYNNFT 229 (461)
Q Consensus 198 ~L~L~~N~l~~~~p~~----~--~~~l~~LdLs~N~l~ 229 (461)
.|.|.+|.|+..--.. + .+.|..|+|++|.+.
T Consensus 274 vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 274 VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999999998322111 1 456779999999995
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=4.8e-09 Score=106.35 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=79.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|..|+|..+.. .+..+++|+.|++++|.|+... .+..++.|+.|++++|.|+ .+. .+..+++|+.+++++|++.
T Consensus 101 ~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 101 DLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhh
Confidence 467888876443 2678999999999999999553 4778888999999999999 333 3666999999999999998
Q ss_pred CCCc-hhhccCCCCcEEEccCCCCc
Q 045177 81 GQIP-SFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 81 ~~~p-~~~~~l~~L~~L~L~~n~l~ 104 (461)
..-+ . ...+.+|+.+++.+|.+.
T Consensus 176 ~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 176 DIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhhhh-hhhccchHHHhccCCchh
Confidence 5443 2 578899999999999986
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=1.6e-09 Score=110.39 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=102.5
Q ss_pred chhhhcCCCCcEEeeccccCCC---CCc------------------h-------hhcC---CCCCCEEEccCCcCCCCch
Q 045177 12 PKYLANISTLVNLTVQYNQFSG---ELP------------------E-------ELGS---LLNLEKLHLSSNNFTGELP 60 (461)
Q Consensus 12 p~~~~~l~~L~~L~Ls~n~l~~---~~p------------------~-------~~~~---l~~L~~L~Ls~N~l~~~~p 60 (461)
|-.+..++.|+.|.|.++.|.. ..+ + .+.+ ...|...+.+.|.+. .+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 3345677888888888887752 110 0 0000 123555666667666 566
Q ss_pred hhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCC
Q 045177 61 KTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATF 140 (461)
Q Consensus 61 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~ 140 (461)
.++.-++.|+.|+|++|+++.. +.+..+++|++|||+.|.+. .+|. +..
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~------------------l~~---------- 229 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ------------------LSM---------- 229 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc------------------cch----------
Confidence 6666677777777777777632 26777777777777777765 2221 111
Q ss_pred cccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCC-CCccccCCCCCCEEEccCCcCC
Q 045177 141 PQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGH-IPSNFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 141 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~ 207 (461)
..++|+.|.|++|.++. + ..+.++.+|+.|||++|-|.+. --..++.+..|+.|+|.+|.+-
T Consensus 230 ---~gc~L~~L~lrnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 230 ---VGCKLQLLNLRNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ---hhhhheeeeecccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 11347888999998873 3 2367888999999999988742 1223566778888999999886
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.33 E-value=3.6e-07 Score=99.63 Aligned_cols=101 Identities=26% Similarity=0.329 Sum_probs=73.1
Q ss_pred CCCCcEEeecccc--CCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcE
Q 045177 18 ISTLVNLTVQYNQ--FSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEK 95 (461)
Q Consensus 18 l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 95 (461)
.+.|++|-+..|. +.....+.|..++.|+.|||++|.--+.+|..+++|-+|++|+|++..++ .+|..+.++.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3467777777775 45344445777888888888877666678888888888888888888888 77888888888888
Q ss_pred EEccCCCCccCCCCcccccccccc
Q 045177 96 LFIQPSGLVGPIPSGIFSLEKFNG 119 (461)
Q Consensus 96 L~L~~n~l~~~~p~~~~~l~~L~~ 119 (461)
|++..+.....+|.....+.+|+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred eccccccccccccchhhhcccccE
Confidence 888877655445444444555554
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=6.6e-07 Score=81.73 Aligned_cols=217 Identities=19% Similarity=0.186 Sum_probs=128.8
Q ss_pred hhcCCCCcEEeeccccCCCCCc----hhhcCCCCCCEEEccCCcCC---CCch-------hhhhCCCCcCEEEeeCCcCC
Q 045177 15 LANISTLVNLTVQYNQFSGELP----EELGSLLNLEKLHLSSNNFT---GELP-------KTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~---~~~p-------~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+.-+..++.++||+|.|..... ..+.+-.+|+..+++.--.. ..++ +++.++|.|+..+||+|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3457889999999999975433 34556678888888764332 2222 34668899999999999998
Q ss_pred CCCch----hhccCCCCcEEEccCCCCccCCCCccc----ccc---cccccccceeeeecccCCCCCCCCCcc--cCCc-
Q 045177 81 GQIPS----FIQNWTKLEKLFIQPSGLVGPIPSGIF----SLE---KFNGLVCMVFLFLRISDLNGPEATFPQ--LGNK- 146 (461)
Q Consensus 81 ~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~---~L~~L~~l~~~~l~~~~l~~~~~~~~~--l~~~- 146 (461)
...|. .+++-+.|.+|.|++|.+...--..++ .+. +...=+.|......-+.+.+....... +...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 66554 567778999999999987532222222 111 111112222222222222222211111 1112
Q ss_pred cccEEEcccCcccccCC-----ccccCCCcccEEeccCCcccCC----CCccccCCCCCCEEEccCCcCCCCCCccc---
Q 045177 147 KMTNLILRNCNITGELP-----PYLGKMTTLKVLDLSFNKLSGH----IPSNFDDLYEVDYIYFTGNLLTGAIPPWM--- 214 (461)
Q Consensus 147 ~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--- 214 (461)
.|+.+.+..|.|....- ..+..+++|+.|||..|-++.. +...+...+.|+.|.+..|.++..-...+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 27777888887763211 1233457888888888877632 23344556668888888888775433332
Q ss_pred -----cccCCccccccCcccCC
Q 045177 215 -----LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 215 -----~~~l~~LdLs~N~l~~~ 231 (461)
.++|..|-+.||.+.+.
T Consensus 266 f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hhhhcCCCccccccchhhhcCc
Confidence 45666777777766553
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=5.5e-07 Score=74.07 Aligned_cols=83 Identities=18% Similarity=0.356 Sum_probs=49.4
Q ss_pred CCCcEEeeccccCCCCCchhhcC-CCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEE
Q 045177 19 STLVNLTVQYNQFSGELPEELGS-LLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLF 97 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 97 (461)
.+|+..+|++|.+. .+|+.|.. .+.++.|+|++|.|+ .+|..++.++.|+.|+++.|.+. ..|..+..+.+|..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 44555566666666 34444433 345666666666666 55666666666666666666666 4455555566666666
Q ss_pred ccCCCCc
Q 045177 98 IQPSGLV 104 (461)
Q Consensus 98 L~~n~l~ 104 (461)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 6666554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=1e-06 Score=81.59 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=35.7
Q ss_pred CCCcEEeeccccCCC--CCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCC-CchhhccCCCCcE
Q 045177 19 STLVNLTVQYNQFSG--ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQ-IPSFIQNWTKLEK 95 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 95 (461)
+.++.|||.+|.|+. .+..-+.+|+.|+.|+|+.|.+...+...=..+.+|+.|-|.+..+... ....+..+|+++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 444455555555542 1222334455555555555555422111102334555555554444322 1223344455555
Q ss_pred EEccCC
Q 045177 96 LFIQPS 101 (461)
Q Consensus 96 L~L~~n 101 (461)
|+|+.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 555554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=6.1e-07 Score=73.77 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=79.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|.+..-.+..-.+++.++.|+|++|+|+ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-.|+..+|.+.
T Consensus 59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 57899988655555556779999999999999 78889999999999999999999 78888888999999999999988
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCC
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPI 107 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~ 107 (461)
.+|..+-.-+.+-..++.++.+.+.-
T Consensus 137 -eid~dl~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 137 -EIDVDLFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred -cCcHHHhccccHHHHHhcCCcccccC
Confidence 55544332222223334555555433
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=7.7e-06 Score=54.36 Aligned_cols=36 Identities=36% Similarity=0.697 Sum_probs=15.7
Q ss_pred CCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 44 NLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 44 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33334444444444444444444
No 53
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=1.7e-07 Score=86.66 Aligned_cols=172 Identities=16% Similarity=0.112 Sum_probs=89.0
Q ss_pred CCCEEEccCCcCCC-CchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCC--Cccccccccccc
Q 045177 44 NLEKLHLSSNNFTG-ELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIP--SGIFSLEKFNGL 120 (461)
Q Consensus 44 ~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L 120 (461)
.|++|||+...|+. .+-..+..+.+|+.|.|.++++...+...++.-.+|+.|+++.+.-..... --+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~- 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE- 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh-
Confidence 46666666666651 223345556666666666666666666666666666666666543110000 00112222222
Q ss_pred ccceeeeecccCCCCCCCCCcc-c--CCccccEEEcccCccc---ccCCccccCCCcccEEeccCCc-ccCCCCccccCC
Q 045177 121 VCMVFLFLRISDLNGPEATFPQ-L--GNKKMTNLILRNCNIT---GELPPYLGKMTTLKVLDLSFNK-LSGHIPSNFDDL 193 (461)
Q Consensus 121 ~~l~~~~l~~~~l~~~~~~~~~-l--~~~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l 193 (461)
++++-+......... + -..+|+.|+|+++.-. ..+......+++|.+||||+|. |+......|.++
T Consensus 265 -------LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 265 -------LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred -------cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc
Confidence 111111111100100 1 1123777888775321 1122223467889999998874 454444566778
Q ss_pred CCCCEEEccCCcCCCCCCccc-----cccCCcccccc
Q 045177 194 YEVDYIYFTGNLLTGAIPPWM-----LEKGDKIDLSY 225 (461)
Q Consensus 194 ~~L~~L~L~~N~l~~~~p~~~-----~~~l~~LdLs~ 225 (461)
+.|++|.|+.|.. .+|+.+ .+.+.+||+-+
T Consensus 338 ~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 338 NYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred chheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 8888888888763 455554 23445665543
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=2e-07 Score=95.47 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=36.5
Q ss_pred hhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchh-hhhCCCCcCEEEeeCCcCCCCCchhhccCCC
Q 045177 14 YLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPK-TFAKLTNMKDFRIGDNQFTGQIPSFIQNWTK 92 (461)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 92 (461)
++.-++.|+.|+|++|+++.. +.+..|++|++|||++|.+. .+|. ...++. |+.|.|++|.++.. ..+.++.+
T Consensus 182 SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhh
Confidence 344444444555555554422 13444445555555555544 2222 111222 44455555544421 12344444
Q ss_pred CcEEEccCCCCc
Q 045177 93 LEKLFIQPSGLV 104 (461)
Q Consensus 93 L~~L~L~~n~l~ 104 (461)
|+.||++.|-+.
T Consensus 256 L~~LDlsyNll~ 267 (1096)
T KOG1859|consen 256 LYGLDLSYNLLS 267 (1096)
T ss_pred hhccchhHhhhh
Confidence 555555544443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=1e-05 Score=53.71 Aligned_cols=37 Identities=43% Similarity=0.638 Sum_probs=32.3
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCC
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFT 56 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 56 (461)
++|++|++++|+|+ .+|..+.+|++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 66777999999999999999999
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=4.7e-05 Score=75.25 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=25.8
Q ss_pred cCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCC
Q 045177 17 NISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDN 77 (461)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 77 (461)
.+++++.|++++|.++ .+|. -..+|+.|.++++.--..+|+.+. ++|+.|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 3455556666655555 3341 112455555555322224444331 35555555555
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=2.8e-06 Score=78.73 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=61.0
Q ss_pred CCCCCcCCC--CCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCC-CchhhhhCCCCcCEEEeeCC
Q 045177 1 SLLANRLTG--PIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTG-ELPKTFAKLTNMKDFRIGDN 77 (461)
Q Consensus 1 ~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N 77 (461)
||.+|.|+. .+-.-+.+|+.|++|+|+.|.+...+...-..+.+|+.|-|.+..+.- .....+..+|.++.|+++.|
T Consensus 77 DL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 77 DLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred hcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 577888764 344456789999999999999985443322467799999999998873 34456778999999999999
Q ss_pred cCC
Q 045177 78 QFT 80 (461)
Q Consensus 78 ~l~ 80 (461)
.+.
T Consensus 157 ~~r 159 (418)
T KOG2982|consen 157 SLR 159 (418)
T ss_pred hhh
Confidence 654
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=0.00012 Score=72.34 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=75.7
Q ss_pred hcCCCCCCEEEccCCcCCCCchhhhhCCC-CcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccc
Q 045177 39 LGSLLNLEKLHLSSNNFTGELPKTFAKLT-NMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKF 117 (461)
Q Consensus 39 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 117 (461)
+..+.+++.|++++|.++ .+| .+| +|+.|.++++.-...+|..+ .++|+.|++++|.....+|..+..|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~-- 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLE-- 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEE--
Confidence 455789999999999888 556 244 69999998744434667655 35899999998843335565433221
Q ss_pred cccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccc--ccCCccccCCCcccEEeccCCcccCCCCccccCCCC
Q 045177 118 NGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNIT--GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYE 195 (461)
Q Consensus 118 ~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 195 (461)
+....+..+ ..+| .+|+.|.+.+++.. ..+|.. -.++|+.|++++|... .+|..+. .+
T Consensus 119 ----------L~~n~~~~L-~~LP----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~S 178 (426)
T PRK15386 119 ----------IKGSATDSI-KNVP----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ES 178 (426)
T ss_pred ----------eCCCCCccc-ccCc----chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--cc
Confidence 111111111 1111 12566666432211 011110 1146777777777655 3444332 46
Q ss_pred CCEEEccCC
Q 045177 196 VDYIYFTGN 204 (461)
Q Consensus 196 L~~L~L~~N 204 (461)
|+.|+++.|
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777777665
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=1.5e-05 Score=73.02 Aligned_cols=228 Identities=17% Similarity=0.102 Sum_probs=130.7
Q ss_pred CCCCCcCCCCCchh----hhcCCCCcEEeeccccCC---CCCc-------hhhcCCCCCCEEEccCCcCCCCchh----h
Q 045177 1 SLLANRLTGPIPKY----LANISTLVNLTVQYNQFS---GELP-------EELGSLLNLEKLHLSSNNFTGELPK----T 62 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~l~---~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~p~----~ 62 (461)
|||+|-|...-..+ +++-++|+..+++.-... ..++ ..+.++++|+..+||.|.+....|+ .
T Consensus 36 dLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~ 115 (388)
T COG5238 36 DLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDL 115 (388)
T ss_pred eccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHH
Confidence 57888887654444 445577888777754322 1222 3456778888888888888755554 3
Q ss_pred hhCCCCcCEEEeeCCcCCCC----Cchh---------hccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeec
Q 045177 63 FAKLTNMKDFRIGDNQFTGQ----IPSF---------IQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLR 129 (461)
Q Consensus 63 ~~~l~~L~~L~Ls~N~l~~~----~p~~---------~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~ 129 (461)
++.-+.|++|.|++|.+... +..+ ...-|.|+......|++.. .|...... -|+.-..++...+.
T Consensus 116 is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~-~l~sh~~lk~vki~ 193 (388)
T COG5238 116 ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAA-LLESHENLKEVKIQ 193 (388)
T ss_pred HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHH-HHHhhcCceeEEee
Confidence 55667888888888887522 1211 2344778888888888752 22211110 01110112222222
Q ss_pred ccCCCCCCC-CCc--c-cCCccccEEEcccCccccc----CCccccCCCcccEEeccCCcccCCCCccc------cCCCC
Q 045177 130 ISDLNGPEA-TFP--Q-LGNKKMTNLILRNCNITGE----LPPYLGKMTTLKVLDLSFNKLSGHIPSNF------DDLYE 195 (461)
Q Consensus 130 ~~~l~~~~~-~~~--~-l~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l------~~l~~ 195 (461)
.+.+.-... .+. . +...+|+.|+|+.|-++.. +...+..++.|+.|.+..|-++..-..++ ...++
T Consensus 194 qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~ 273 (388)
T COG5238 194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN 273 (388)
T ss_pred ecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC
Confidence 222211100 000 1 1223499999999988843 33456677889999999999875433222 23578
Q ss_pred CCEEEccCCcCCCCCCcc-c--------cccCCccccccCcccC
Q 045177 196 VDYIYFTGNLLTGAIPPW-M--------LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 196 L~~L~L~~N~l~~~~p~~-~--------~~~l~~LdLs~N~l~~ 230 (461)
|..|-+.+|.+.+.+-.. + .+.|..|.+.+|+|..
T Consensus 274 l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 274 LMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 899999999887533222 1 2223355556666654
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.2e-06 Score=79.37 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=110.9
Q ss_pred CCCcEEeeccccCCC-CCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCC-cCCCC-CchhhccCCCCcE
Q 045177 19 STLVNLTVQYNQFSG-ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDN-QFTGQ-IPSFIQNWTKLEK 95 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~ 95 (461)
+.|+.||||+..|+. .+..-+..+.+|+.|.|.++++...+...+++..+|+.|+|+.+ .++.. ..-.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 458888888887763 23345667788888888888888777778888888888888864 34421 1124677888888
Q ss_pred EEccCCCCccCCCCccc--ccccccccccceeeeecccCCCCCC--CCCcc-c-CCccccEEEcccCcc-cccCCccccC
Q 045177 96 LFIQPSGLVGPIPSGIF--SLEKFNGLVCMVFLFLRISDLNGPE--ATFPQ-L-GNKKMTNLILRNCNI-TGELPPYLGK 168 (461)
Q Consensus 96 L~L~~n~l~~~~p~~~~--~l~~L~~L~~l~~~~l~~~~l~~~~--~~~~~-l-~~~~L~~L~L~~n~l-~~~~~~~~~~ 168 (461)
|+|+.|.+....-..+- --++|+. ++++++.... ..+.. . ..+.|.+|||++|.. +......|.+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~--------LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQ--------LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhh--------hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 88888876532211100 0012222 2222211100 00111 1 123388999998753 3333345678
Q ss_pred CCcccEEeccCCcccCCCCcc---ccCCCCCCEEEccCC
Q 045177 169 MTTLKVLDLSFNKLSGHIPSN---FDDLYEVDYIYFTGN 204 (461)
Q Consensus 169 l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~L~~N 204 (461)
++.|++|.|+.|..- +|+. +..+++|.+|++-++
T Consensus 337 f~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 899999999998753 5654 566789999998774
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=4.9e-05 Score=66.84 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=63.2
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCC-chhhccCCCCcEEE
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQI-PSFIQNWTKLEKLF 97 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ 97 (461)
.....+||++|.+. .+ +.|..+++|..|.|++|+|+.+-|.--.-+++|+.|.|.+|.|.... -+-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45667888888887 33 25778888899999999998666665556778899999988886221 12467788889998
Q ss_pred ccCCCCcc
Q 045177 98 IQPSGLVG 105 (461)
Q Consensus 98 L~~n~l~~ 105 (461)
+-+|.+..
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 88888763
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.43 E-value=0.00021 Score=63.02 Aligned_cols=80 Identities=16% Similarity=0.287 Sum_probs=59.8
Q ss_pred CcEEeeccccCCCCCchhhcC-CCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEcc
Q 045177 21 LVNLTVQYNQFSGELPEELGS-LLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQ 99 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 99 (461)
=+.++|.+.++..+ . .++. +.+...+||++|.+. .++ .|..++.|.+|.|++|+|+..-|.--..+++|..|.|.
T Consensus 21 e~e~~LR~lkip~i-e-nlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-E-NLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch-h-hccccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 55677777776622 1 1332 346788999999987 333 37788899999999999997777666677889999999
Q ss_pred CCCCc
Q 045177 100 PSGLV 104 (461)
Q Consensus 100 ~n~l~ 104 (461)
+|.|.
T Consensus 97 nNsi~ 101 (233)
T KOG1644|consen 97 NNSIQ 101 (233)
T ss_pred Ccchh
Confidence 99886
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.17 E-value=0.00028 Score=75.44 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=50.3
Q ss_pred CCCCEEEccCCcCC-CCchhhh-hCCCCcCEEEeeCCcCCC-CCchhhccCCCCcEEEccCCCCccCCCCcccccccccc
Q 045177 43 LNLEKLHLSSNNFT-GELPKTF-AKLTNMKDFRIGDNQFTG-QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNG 119 (461)
Q Consensus 43 ~~L~~L~Ls~N~l~-~~~p~~~-~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 119 (461)
.+|++|++++...- ...|..+ ..||+|+.|.+++=.+.. ..-....++++|..||+++.+++.. .+++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 47999999886653 2233333 358999999998866642 2334567889999999999988732 34444444444
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00021 Score=65.54 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=47.2
Q ss_pred CchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCC--cCCCCCchhhccCCCCcEEEccCCCCc
Q 045177 35 LPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDN--QFTGQIPSFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 35 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~L~~n~l~ 104 (461)
+......+..|+.|.+.+..++. +. .|-.|++|++|.++.| ++.+.++.....+++|++|++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44444556677777777777762 22 2567788888888888 666556666666788888888888875
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00049 Score=63.11 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=68.4
Q ss_pred CchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCC--cCCCCchhhhhCCCCcCEEEeeCCcCCCC-Cchhh
Q 045177 11 IPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSN--NFTGELPKTFAKLTNMKDFRIGDNQFTGQ-IPSFI 87 (461)
Q Consensus 11 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~ 87 (461)
+......+..|+.|++.+..++.. ..|-.|++|++|.++.| ++.+.++.....+|+|++|+++.|++... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 455555677788888888877732 24667889999999999 66666666666779999999999999721 11235
Q ss_pred ccCCCCcEEEccCCCCc
Q 045177 88 QNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 88 ~~l~~L~~L~L~~n~l~ 104 (461)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 56777888898888765
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.90 E-value=0.0017 Score=54.07 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=44.7
Q ss_pred chhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCC
Q 045177 12 PKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWT 91 (461)
Q Consensus 12 p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 91 (461)
..+|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|..+++|+.+.+.+ .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34667777777777764 455444556777777777777665 5534445666776777777754 44334445566666
Q ss_pred CCcEEEccC
Q 045177 92 KLEKLFIQP 100 (461)
Q Consensus 92 ~L~~L~L~~ 100 (461)
+|+.+.+..
T Consensus 82 ~l~~i~~~~ 90 (129)
T PF13306_consen 82 NLKNIDIPS 90 (129)
T ss_dssp TECEEEETT
T ss_pred cccccccCc
Confidence 777666644
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.00017 Score=66.48 Aligned_cols=88 Identities=17% Similarity=0.236 Sum_probs=55.3
Q ss_pred CCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCc-hhhccCCCCcEE
Q 045177 18 ISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIP-SFIQNWTKLEKL 96 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L 96 (461)
+.+.+.|++-++.|+++ .....++.|+.|.|+-|+|+..-| |..+++|++|+|..|.|...-- ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556667777776643 234567777777777777774333 6677777777777777762211 245667777777
Q ss_pred EccCCCCccCCCC
Q 045177 97 FIQPSGLVGPIPS 109 (461)
Q Consensus 97 ~L~~n~l~~~~p~ 109 (461)
.|..|.-.+.-+.
T Consensus 94 WL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 94 WLDENPCCGEAGQ 106 (388)
T ss_pred hhccCCcccccch
Confidence 7777766655443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.72 E-value=0.0047 Score=51.32 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=33.6
Q ss_pred hhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 37 EELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 37 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
..|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......|.++++|+.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 3566777788877774 455444556777777888877664 5545555677776777777754
No 69
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.53 E-value=0.0018 Score=69.44 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=47.2
Q ss_pred CCCCcEEeeccccCCC-CCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC-CCchhhccCCCCcE
Q 045177 18 ISTLVNLTVQYNQFSG-ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG-QIPSFIQNWTKLEK 95 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~ 95 (461)
+|.|+.|.+++-.+.. .+-....++++|..||+|+.+++. + ..++.|++|+.|.+.+=.+.. ..-..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 5666666666655532 222334456666777777766663 2 346666666666666555542 12234555666666
Q ss_pred EEccCCCC
Q 045177 96 LFIQPSGL 103 (461)
Q Consensus 96 L~L~~n~l 103 (461)
||+|....
T Consensus 225 LDIS~~~~ 232 (699)
T KOG3665|consen 225 LDISRDKN 232 (699)
T ss_pred eecccccc
Confidence 66665544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00019 Score=66.26 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=56.3
Q ss_pred hhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchh--hhhCCCCcCEEEeeCCcCCCCCc-----hhh
Q 045177 15 LANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPK--TFAKLTNMKDFRIGDNQFTGQIP-----SFI 87 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p-----~~~ 87 (461)
..+|+.|++|.||-|+|+..- .+..+++|++|+|..|.|. .+.+ .+.++|+|+.|+|..|.--+.-+ ..+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 356788888888888887443 3677888888888888887 3332 46778888888888877665443 345
Q ss_pred ccCCCCcEEE
Q 045177 88 QNWTKLEKLF 97 (461)
Q Consensus 88 ~~l~~L~~L~ 97 (461)
..|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 6677777765
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.39 E-value=0.00038 Score=62.69 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=78.0
Q ss_pred CCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchh
Q 045177 7 LTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSF 86 (461)
Q Consensus 7 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 86 (461)
++.+.-..+...+..+.||++.|++. .+...|..++.|..|+++.|.+. .+|+.++.+..+..+++..|.++ ..|.+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence 33333345677888899999999887 45556888888999999999998 78888888888999999888888 78899
Q ss_pred hccCCCCcEEEccCCCCc
Q 045177 87 IQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 87 ~~~l~~L~~L~L~~n~l~ 104 (461)
+...+.++++++-+|.+.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 999999999999888764
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0098 Score=32.88 Aligned_cols=18 Identities=61% Similarity=0.840 Sum_probs=9.4
Q ss_pred ccEEeccCCcccCCCCccc
Q 045177 172 LKVLDLSFNKLSGHIPSNF 190 (461)
Q Consensus 172 L~~L~Ls~N~l~~~~p~~l 190 (461)
|+.|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 555555555555 444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.12 E-value=0.009 Score=33.03 Aligned_cols=12 Identities=67% Similarity=0.794 Sum_probs=4.8
Q ss_pred CCEEEccCCcCC
Q 045177 45 LEKLHLSSNNFT 56 (461)
Q Consensus 45 L~~L~Ls~N~l~ 56 (461)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.00 E-value=0.00045 Score=70.70 Aligned_cols=84 Identities=24% Similarity=0.263 Sum_probs=51.2
Q ss_pred ccEEEcccCcccccC----CccccCCCc-ccEEeccCCcccCC----CCccccCC-CCCCEEEccCCcCCCCCCccc---
Q 045177 148 MTNLILRNCNITGEL----PPYLGKMTT-LKVLDLSFNKLSGH----IPSNFDDL-YEVDYIYFTGNLLTGAIPPWM--- 214 (461)
Q Consensus 148 L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~--- 214 (461)
+++|.+++|.++... ...+...+. +..|++..|++.+. ....+..+ ..++.++++.|.|+..-..++
T Consensus 206 le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~ 285 (478)
T KOG4308|consen 206 LETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV 285 (478)
T ss_pred HHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence 777777777766321 112333344 66688888877643 22334444 567788888888876555444
Q ss_pred ---cccCCccccccCcccCC
Q 045177 215 ---LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 215 ---~~~l~~LdLs~N~l~~~ 231 (461)
...++.+.+++|.+...
T Consensus 286 l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 286 LVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HhhhHHHHHhhcccCccccH
Confidence 23456788888877653
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.84 E-value=0.00098 Score=68.26 Aligned_cols=62 Identities=26% Similarity=0.351 Sum_probs=45.3
Q ss_pred ccEEEcccCccccc----CCccccCC-CcccEEeccCCcccCC----CCccccCCCCCCEEEccCCcCCCC
Q 045177 148 MTNLILRNCNITGE----LPPYLGKM-TTLKVLDLSFNKLSGH----IPSNFDDLYEVDYIYFTGNLLTGA 209 (461)
Q Consensus 148 L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~ 209 (461)
+..|++..|.+.+. ....+..+ ..+++++++.|.|+.. +...+..++.++.|.+++|.+...
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 55588888887743 23334455 6789999999999854 344566777899999999998753
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.59 E-value=0.0021 Score=58.02 Aligned_cols=77 Identities=25% Similarity=0.283 Sum_probs=67.0
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
||+.|++. .+-..|+-++.|..|+++.|.+. ..|..+..+..++.+++..|..+ ..|.+++.++.++++++..|.+.
T Consensus 48 d~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 48 DLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 56667664 34455778889999999999999 88999999999999999999999 88999999999999999999876
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.44 E-value=0.08 Score=27.16 Aligned_cols=13 Identities=54% Similarity=0.795 Sum_probs=4.5
Q ss_pred cccEEeccCCccc
Q 045177 171 TLKVLDLSFNKLS 183 (461)
Q Consensus 171 ~L~~L~Ls~N~l~ 183 (461)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.91 E-value=0.12 Score=26.55 Aligned_cols=7 Identities=57% Similarity=0.733 Sum_probs=2.5
Q ss_pred EEEccCC
Q 045177 47 KLHLSSN 53 (461)
Q Consensus 47 ~L~Ls~N 53 (461)
.|+|++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.27 E-value=0.3 Score=27.94 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=7.1
Q ss_pred CCCCEEEccCCcCC
Q 045177 43 LNLEKLHLSSNNFT 56 (461)
Q Consensus 43 ~~L~~L~Ls~N~l~ 56 (461)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.27 E-value=0.3 Score=27.94 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=7.1
Q ss_pred CCCCEEEccCCcCC
Q 045177 43 LNLEKLHLSSNNFT 56 (461)
Q Consensus 43 ~~L~~L~Ls~N~l~ 56 (461)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.70 E-value=0.11 Score=53.40 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=49.5
Q ss_pred hhcCCCCcEEeeccc-cCCCCCc----hhhcCCCCCCEEEccCCc-CCCCchhhhh-CCCCcCEEEeeCCc-CCCCC-ch
Q 045177 15 LANISTLVNLTVQYN-QFSGELP----EELGSLLNLEKLHLSSNN-FTGELPKTFA-KLTNMKDFRIGDNQ-FTGQI-PS 85 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~~-p~ 85 (461)
...++.|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..+. .+++|+.|.+..+. ++... -.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 445677777777752 1111111 223345677777777776 5533223333 26777777766665 44322 22
Q ss_pred hhccCCCCcEEEccCCCCc
Q 045177 86 FIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 86 ~~~~l~~L~~L~L~~n~l~ 104 (461)
....+++|++|+++.+...
T Consensus 290 i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHhcCcccEEeeecCccc
Confidence 3345677777777766543
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.37 E-value=0.41 Score=27.37 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=10.1
Q ss_pred CCCcCEEEeeCCcCCCC
Q 045177 66 LTNMKDFRIGDNQFTGQ 82 (461)
Q Consensus 66 l~~L~~L~Ls~N~l~~~ 82 (461)
|++|+.|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 34566666666666633
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.37 E-value=0.41 Score=27.37 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=10.1
Q ss_pred CCCcCEEEeeCCcCCCC
Q 045177 66 LTNMKDFRIGDNQFTGQ 82 (461)
Q Consensus 66 l~~L~~L~Ls~N~l~~~ 82 (461)
|++|+.|+|++|+++..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 34566666666666633
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.08 E-value=0.24 Score=27.77 Aligned_cols=11 Identities=55% Similarity=0.748 Sum_probs=3.5
Q ss_pred CCEEEccCCcC
Q 045177 45 LEKLHLSSNNF 55 (461)
Q Consensus 45 L~~L~Ls~N~l 55 (461)
|++|+|++|+|
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33334433333
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.95 E-value=2.9 Score=24.07 Aligned_cols=14 Identities=50% Similarity=0.662 Sum_probs=6.9
Q ss_pred CCCCEEEccCCcCC
Q 045177 43 LNLEKLHLSSNNFT 56 (461)
Q Consensus 43 ~~L~~L~Ls~N~l~ 56 (461)
++|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.03 E-value=2.7 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=8.5
Q ss_pred CCCEEEccCCcCCCCCC
Q 045177 195 EVDYIYFTGNLLTGAIP 211 (461)
Q Consensus 195 ~L~~L~L~~N~l~~~~p 211 (461)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555555 444
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.82 E-value=1.2 Score=39.82 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=16.4
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCc
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN 54 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 54 (461)
++.+|-++..|..+--+.+.+++.|+.|.+.++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 4445555555544433444455555555554443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.57 E-value=4.6 Score=23.54 Aligned_cols=13 Identities=62% Similarity=0.756 Sum_probs=7.8
Q ss_pred cccEEeccCCccc
Q 045177 171 TLKVLDLSFNKLS 183 (461)
Q Consensus 171 ~L~~L~Ls~N~l~ 183 (461)
+|+.|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.17 E-value=1.8 Score=38.66 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=48.2
Q ss_pred cCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccC-CCCccc-cCCCCCCEEEccCCc-CCCCCCccc--ccc
Q 045177 143 LGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSG-HIPSNF-DDLYEVDYIYFTGNL-LTGAIPPWM--LEK 217 (461)
Q Consensus 143 l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l-~~l~~L~~L~L~~N~-l~~~~p~~~--~~~ 217 (461)
..+..++.++.++..|..+--..+..++.++.|.+.+++--+ .--+-+ ...++|+.|+|++|. ||..--.++ +++
T Consensus 98 ~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 98 ADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred CCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 333447888888888776666667777777777777764321 100111 134578888888664 553322233 556
Q ss_pred CCcccccc
Q 045177 218 GDKIDLSY 225 (461)
Q Consensus 218 l~~LdLs~ 225 (461)
|+.|.|.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66665544
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.70 E-value=6.6 Score=40.44 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=32.6
Q ss_pred CCCCCCEEEccCCcCCCC--chhhhhCCCCcCEEEeeCCcCCCCCchhhcc--CCCCcEEEccCCCCcc
Q 045177 41 SLLNLEKLHLSSNNFTGE--LPKTFAKLTNMKDFRIGDNQFTGQIPSFIQN--WTKLEKLFIQPSGLVG 105 (461)
Q Consensus 41 ~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~L~~n~l~~ 105 (461)
+.+.+..+.|++|++... +...-...|+|+.|+|++|...-....++.+ ...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 445566666777766521 1112234566777777776221111112222 2356677777776653
No 91
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=58.29 E-value=5.7 Score=40.62 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=57.9
Q ss_pred hhhcCCCCcEEeecccc-CCCCCchhhcC-CCCCCEEEccCCc-CCCC-chhhhhCCCCcCEEEeeCCcCCCC--Cchhh
Q 045177 14 YLANISTLVNLTVQYNQ-FSGELPEELGS-LLNLEKLHLSSNN-FTGE-LPKTFAKLTNMKDFRIGDNQFTGQ--IPSFI 87 (461)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~-l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~ 87 (461)
....+++|+.|+++++. +++..-..+.. +++|+.|.+.++. ++.. +-.....+++|++|+|+.+..... +....
T Consensus 238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 34557899999999998 66544344443 7899999988887 5532 333456788999999998876411 22334
Q ss_pred ccCCCCcEEEcc
Q 045177 88 QNWTKLEKLFIQ 99 (461)
Q Consensus 88 ~~l~~L~~L~L~ 99 (461)
.++++|+.|.+.
T Consensus 318 ~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 318 KNCPNLRELKLL 329 (482)
T ss_pred HhCcchhhhhhh
Confidence 556666665543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.08 E-value=7.3 Score=40.15 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=23.5
Q ss_pred hCCCCcCEEEeeCCcCCCC--CchhhccCCCCcEEEccCC
Q 045177 64 AKLTNMKDFRIGDNQFTGQ--IPSFIQNWTKLEKLFIQPS 101 (461)
Q Consensus 64 ~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~n 101 (461)
.+.+.+..+.|++|++... +...-...++|..|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3556777777777777522 1122344577777788777
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=52.66 E-value=38 Score=34.52 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=24.7
Q ss_pred cccEEeccCCcccCCCCc---cccCCCCCCEEEccCCcCCC
Q 045177 171 TLKVLDLSFNKLSGHIPS---NFDDLYEVDYIYFTGNLLTG 208 (461)
Q Consensus 171 ~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~ 208 (461)
-+..+.++.+.+....-. .+..-+.+..|++++|....
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCccc
Confidence 366777787777643322 23445678888888888763
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.99 E-value=48 Score=33.77 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhc---CCCCCCEEEccCCcCCCCchhhhhC---CCCcCEEEe
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELG---SLLNLEKLHLSSNNFTGELPKTFAK---LTNMKDFRI 74 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~~p~~~~~---l~~L~~L~L 74 (461)
||+.|.+....|-.+..=. --|.++.++++...-..+. .=..|.+++|+.|.....+|..+.. -..|+.++.
T Consensus 171 dls~npi~dkvpihl~~p~--~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~ 248 (553)
T KOG4242|consen 171 DLSPNPIGDKVPIHLPQPG--NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDR 248 (553)
T ss_pred ccCCCcccccCCccccCCC--CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccc
Confidence 4566666555554443211 1145555555422111000 1124667777777766666654322 124555555
Q ss_pred eCCcCC---CCCchhhccCCCCcEEEccCCCC
Q 045177 75 GDNQFT---GQIPSFIQNWTKLEKLFIQPSGL 103 (461)
Q Consensus 75 s~N~l~---~~~p~~~~~l~~L~~L~L~~n~l 103 (461)
+...+. ...+-..+.-++|...+++.|..
T Consensus 249 s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 249 STTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccchhhcccccccccccccchhhhccCCC
Confidence 544442 11222334445666666665544
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.26 E-value=23 Score=43.74 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=27.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFS 32 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 32 (461)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 78899999888888999999999999988775
No 96
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=35.11 E-value=2.4e+02 Score=22.63 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=43.1
Q ss_pred cccc-CccEEEEEEeEeeeecCCCCccCCCcceeEEEECC--EEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEEE
Q 045177 359 FCLG-NGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQG--NLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLY 435 (461)
Q Consensus 359 ~~~~-~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~--~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~ 435 (461)
+.++ .|.|.|++..+-.. +.+.++|+++| -.++..+++.. .|+...-......|....|.=+|.|.
T Consensus 39 Vd~~~~g~y~~~~~~a~~~----------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~~G~h~i~l~ 107 (125)
T PF03422_consen 39 VDVPEAGTYTLTIRYANGG----------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLPAGKHTIYLV 107 (125)
T ss_dssp EEESSSEEEEEEEEEEESS----------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEESEEEEEEEE
T ss_pred EeeCCCceEEEEEEEECCC----------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeCCCeeEEEEE
Confidence 5554 68999998776531 22789999999 45566677744 44544433333445555577667776
Q ss_pred EcCC
Q 045177 436 WAGK 439 (461)
Q Consensus 436 ~~~~ 439 (461)
..+.
T Consensus 108 ~~~~ 111 (125)
T PF03422_consen 108 FNGG 111 (125)
T ss_dssp ESSS
T ss_pred EECC
Confidence 4443
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.62 E-value=33 Score=42.52 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.0
Q ss_pred eeccccCCCCCchhhcCCCCCCEEEccCCcCC
Q 045177 25 TVQYNQFSGELPEELGSLLNLEKLHLSSNNFT 56 (461)
Q Consensus 25 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 56 (461)
||++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666677888888888888888876
No 98
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=32.00 E-value=28 Score=29.01 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.9
Q ss_pred cccccccccCccEEEEEEe
Q 045177 354 LTYYGFCLGNGNYTVKLHF 372 (461)
Q Consensus 354 ~~~~~~~~~~G~y~v~L~F 372 (461)
-.+|.|.++||.|.|.|.-
T Consensus 46 ~G~Ys~~~epG~Y~V~l~~ 64 (134)
T PF08400_consen 46 AGEYSFDVEPGVYRVTLKV 64 (134)
T ss_pred CceEEEEecCCeEEEEEEE
Confidence 3468999999999998854
No 99
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=25.88 E-value=92 Score=21.80 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=11.3
Q ss_pred ccccCccEEEEEEeEee
Q 045177 359 FCLGNGNYTVKLHFAEI 375 (461)
Q Consensus 359 ~~~~~G~y~v~L~F~e~ 375 (461)
..+++|+|++++.=..-
T Consensus 34 ~~L~~G~Y~l~V~a~~~ 50 (66)
T PF07495_consen 34 TNLPPGKYTLEVRAKDN 50 (66)
T ss_dssp ES--SEEEEEEEEEEET
T ss_pred EeCCCEEEEEEEEEECC
Confidence 36799999998875553
No 100
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=25.17 E-value=78 Score=27.53 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=43.2
Q ss_pred ccccccCccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEEE
Q 045177 357 YGFCLGNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLY 435 (461)
Q Consensus 357 ~~~~~~~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~ 435 (461)
..+|..||.|.+++.--=... ...-++...-++.|..-+.|.++.+.. ..|.-..+++.|.+.|+|.
T Consensus 99 ~~lP~~pG~h~~~v~~wrP~~------~s~~~~l~~~f~G~~pel~d~~~~~~~------~~R~~l~t~s~G~V~v~l~ 165 (168)
T PF07162_consen 99 CHLPTQPGRHEVEVPTWRPVS------GSIRQELRSFFVGGRPELVDPDFIASG------ESRFGLRTESSGSVKVRLN 165 (168)
T ss_pred EEeCCCCceEEEEEEEEeecC------CCHHHHhhhheecCCceEcCcchhcCc------ccccCcEEEeeeEEEEEEE
Confidence 345788999999985433211 344577778888999999998776532 2222222446788888774
No 101
>PF12167 DUF3596: Domain of unknown function (DUF3596); InterPro: IPR022000 This N-terminal domain is found in Bacteriophage P27p02, it is functionally uncharacterised, though it is considered to be an integrase. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. This domain is found in related proteins in other bacteriophage, and prophage regions of bacterial genomes. The domain is approximately 90 amino acids in length and is found is associated with the C-terminal domain characterised by PF00589 from PFAM.
Probab=24.07 E-value=97 Score=22.13 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=14.1
Q ss_pred EEEeCCeEEEEEEEcCC
Q 045177 423 AAVTNGTMEIRLYWAGK 439 (461)
Q Consensus 423 v~v~~~~l~i~f~~~~~ 439 (461)
|.|-+|.|.|.|.|.|+
T Consensus 4 V~~r~~~L~i~F~y~G~ 20 (64)
T PF12167_consen 4 VRVRNGKLRIDFTYQGK 20 (64)
T ss_pred EEEECCEEEEEEEECCE
Confidence 34558999999999997
No 102
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.91 E-value=59 Score=18.22 Aligned_cols=11 Identities=45% Similarity=0.495 Sum_probs=5.5
Q ss_pred CCCCEEEccCC
Q 045177 43 LNLEKLHLSSN 53 (461)
Q Consensus 43 ~~L~~L~Ls~N 53 (461)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 103
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=21.11 E-value=61 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=15.3
Q ss_pred ccCCCccccccccccCccEEEEEEe
Q 045177 348 RLSAISLTYYGFCLGNGNYTVKLHF 372 (461)
Q Consensus 348 r~~~~~~~~~~~~~~~G~y~v~L~F 372 (461)
.+.|......+-++++|.|.+++.-
T Consensus 53 ~~~WdG~d~~G~~~~~G~Y~~~v~a 77 (81)
T PF13860_consen 53 SFTWDGKDDDGNPVPDGTYTFRVTA 77 (81)
T ss_dssp EEEE-SB-TTS-B--SEEEEEEEEE
T ss_pred EEEECCCCCCcCCCCCCCEEEEEEE
Confidence 4567766667889999999998764
No 104
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.77 E-value=43 Score=33.63 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=53.7
Q ss_pred hcCCCCcEEeecccc-CCCCCchhh-cCCCCCCEEEccCCcCCC--CchhhhhCCCCcCEEEeeCCcCCCCC-----chh
Q 045177 16 ANISTLVNLTVQYNQ-FSGELPEEL-GSLLNLEKLHLSSNNFTG--ELPKTFAKLTNMKDFRIGDNQFTGQI-----PSF 86 (461)
Q Consensus 16 ~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~ 86 (461)
.+..+|+.|.++.++ ++..--..+ .+.+.|+.+++..+.... .+...-.+++.|+.|.|+++.+.... ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 356889999998886 332211112 356778888888776541 12222345678888888877653221 222
Q ss_pred hccCCCCcEEEccCCCCc
Q 045177 87 IQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 87 ~~~l~~L~~L~L~~n~l~ 104 (461)
-..+..|+.|.|+++...
T Consensus 397 ~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLI 414 (483)
T ss_pred cccccccceeeecCCCCc
Confidence 345667888888877654
No 105
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.14 E-value=60 Score=32.64 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=58.1
Q ss_pred cCCCCcEEeeccccC-CCCCchhh-cCCCCCCEEEccCCcC-CCCchhhh-hCCCCcCEEEeeCCcCCC--CCchhhccC
Q 045177 17 NISTLVNLTVQYNQF-SGELPEEL-GSLLNLEKLHLSSNNF-TGELPKTF-AKLTNMKDFRIGDNQFTG--QIPSFIQNW 90 (461)
Q Consensus 17 ~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~Ls~N~l-~~~~p~~~-~~l~~L~~L~Ls~N~l~~--~~p~~~~~l 90 (461)
.+..|+.|+.+++.- +...-..+ .+..+|+.|.++.++- +..--..+ .+.+.|+.+++..+.+.. .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 467889999987754 32222233 4678999999999873 21111112 356789999998877642 233334568
Q ss_pred CCCcEEEccCCCCc
Q 045177 91 TKLEKLFIQPSGLV 104 (461)
Q Consensus 91 ~~L~~L~L~~n~l~ 104 (461)
+.|+.|.++++...
T Consensus 372 ~~lr~lslshce~i 385 (483)
T KOG4341|consen 372 PRLRVLSLSHCELI 385 (483)
T ss_pred chhccCChhhhhhh
Confidence 99999999987654
Done!