Query 045177
Match_columns 461
No_of_seqs 608 out of 3473
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 18:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 8.7E-31 3E-35 254.3 12.9 234 1-245 56-296 (313)
2 2jwp_A Malectin, MGC80075; sug 100.0 2.5E-30 8.4E-35 228.1 10.7 118 337-461 50-170 (174)
3 3rgz_A Protein brassinosteroid 100.0 2.3E-29 8E-34 273.1 20.2 234 2-235 425-723 (768)
4 3rgz_A Protein brassinosteroid 100.0 3.2E-29 1.1E-33 272.0 20.2 238 1-247 400-711 (768)
5 1ogq_A PGIP-2, polygalacturona 100.0 5.9E-29 2E-33 241.4 11.6 224 2-237 83-312 (313)
6 4fcg_A Uncharacterized protein 99.9 3.5E-27 1.2E-31 230.4 16.6 222 17-246 79-307 (328)
7 1xku_A Decorin; proteoglycan, 99.9 5E-26 1.7E-30 222.2 22.2 225 1-239 58-286 (330)
8 3v47_A TOLL-like receptor 5B a 99.9 2.1E-26 7E-31 234.8 17.2 100 147-246 276-377 (455)
9 3v47_A TOLL-like receptor 5B a 99.9 5.3E-26 1.8E-30 231.7 19.7 245 2-246 61-401 (455)
10 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-25 4E-30 219.9 20.2 224 1-239 60-287 (332)
11 4eco_A Uncharacterized protein 99.9 4.7E-27 1.6E-31 249.6 11.1 229 1-237 87-423 (636)
12 3zyj_A Leucine-rich repeat-con 99.9 8.3E-26 2.8E-30 229.6 18.3 216 19-244 64-283 (440)
13 2id5_A Lingo-1, leucine rich r 99.9 8.3E-26 2.8E-30 231.9 17.9 244 1-246 62-326 (477)
14 3zyi_A Leucine-rich repeat-con 99.9 9.2E-26 3.1E-30 230.1 17.9 215 19-243 75-293 (452)
15 4eco_A Uncharacterized protein 99.9 1.4E-25 4.9E-30 238.2 17.7 215 1-229 212-470 (636)
16 3o6n_A APL1; leucine-rich repe 99.9 4.7E-25 1.6E-29 220.4 19.6 224 2-236 76-314 (390)
17 2z66_A Variable lymphocyte rec 99.9 1.1E-25 3.8E-30 217.3 14.3 225 2-239 14-246 (306)
18 2id5_A Lingo-1, leucine rich r 99.9 1.5E-25 5.3E-30 229.8 16.1 237 1-246 38-302 (477)
19 3zyj_A Leucine-rich repeat-con 99.9 6.3E-25 2.1E-29 223.1 19.5 220 1-230 70-293 (440)
20 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-25 7.2E-30 213.2 15.1 218 2-231 18-240 (285)
21 1ozn_A Reticulon 4 receptor; N 99.9 6.9E-25 2.4E-29 209.6 18.5 213 22-246 14-231 (285)
22 3zyi_A Leucine-rich repeat-con 99.9 6.4E-25 2.2E-29 223.8 18.9 220 1-230 81-304 (452)
23 3oja_B Anopheles plasmodium-re 99.9 5.5E-25 1.9E-29 232.1 18.4 230 2-242 82-326 (597)
24 4ecn_A Leucine-rich repeat pro 99.9 7.7E-26 2.6E-30 245.7 12.1 228 1-236 329-664 (876)
25 3o6n_A APL1; leucine-rich repe 99.9 9.3E-25 3.2E-29 218.2 17.3 232 2-245 52-300 (390)
26 3j0a_A TOLL-like receptor 5; m 99.9 5.3E-25 1.8E-29 241.3 16.5 249 1-251 272-561 (844)
27 4fcg_A Uncharacterized protein 99.9 1.1E-24 3.9E-29 212.6 15.8 217 1-230 87-315 (328)
28 3t6q_A CD180 antigen; protein- 99.9 1.7E-24 5.7E-29 228.7 18.3 233 1-242 284-526 (606)
29 3t6q_A CD180 antigen; protein- 99.9 2E-24 6.9E-29 228.0 18.5 237 1-247 260-507 (606)
30 2z66_A Variable lymphocyte rec 99.9 2.8E-24 9.6E-29 207.5 16.9 222 1-231 34-263 (306)
31 1ziw_A TOLL-like receptor 3; i 99.9 3.2E-24 1.1E-28 229.7 18.8 230 1-239 31-295 (680)
32 2z80_A TOLL-like receptor 2, v 99.9 4.5E-25 1.5E-29 217.6 10.4 232 2-246 38-307 (353)
33 2z7x_B TOLL-like receptor 1, v 99.9 5.9E-24 2E-28 220.4 19.2 242 1-245 27-429 (520)
34 1wwl_A Monocyte differentiatio 99.9 5.7E-25 2E-29 213.1 10.2 195 17-245 93-301 (312)
35 1xku_A Decorin; proteoglycan, 99.9 2.2E-23 7.4E-28 203.5 20.9 214 1-230 82-307 (330)
36 2o6q_A Variable lymphocyte rec 99.9 1.7E-23 5.7E-28 198.5 19.3 196 2-231 23-220 (270)
37 4ecn_A Leucine-rich repeat pro 99.9 1.3E-24 4.5E-29 236.1 13.1 218 4-236 434-692 (876)
38 3rfs_A Internalin B, repeat mo 99.9 9E-24 3.1E-28 200.6 17.3 215 3-237 27-243 (272)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2E-23 6.7E-28 218.7 20.4 243 1-246 58-459 (562)
40 2z62_A TOLL-like receptor 4, v 99.9 3.9E-24 1.3E-28 203.4 13.7 210 11-231 22-239 (276)
41 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-23 5.3E-28 204.8 18.3 226 1-243 84-323 (332)
42 2z80_A TOLL-like receptor 2, v 99.9 2.5E-24 8.7E-29 212.2 12.7 223 1-233 58-318 (353)
43 3vq2_A TLR4, TOLL-like recepto 99.9 4E-24 1.4E-28 225.8 14.8 99 147-246 351-454 (606)
44 2z7x_B TOLL-like receptor 1, v 99.9 8.9E-24 3E-28 219.0 15.9 114 1-120 6-120 (520)
45 3oja_B Anopheles plasmodium-re 99.9 1.2E-23 4.1E-28 221.9 16.8 236 1-245 105-353 (597)
46 3j0a_A TOLL-like receptor 5; m 99.9 3E-23 1E-27 227.4 19.0 243 1-243 54-365 (844)
47 4g8a_A TOLL-like receptor 4; l 99.9 6.1E-23 2.1E-27 217.2 20.5 104 1-104 58-161 (635)
48 3m19_A Variable lymphocyte rec 99.9 3.4E-23 1.2E-27 194.2 16.3 176 21-230 16-193 (251)
49 1ziw_A TOLL-like receptor 3; i 99.9 9.1E-23 3.1E-27 218.3 20.3 244 1-245 55-358 (680)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-23 1.1E-27 217.0 16.2 114 1-120 37-151 (562)
51 3rfs_A Internalin B, repeat mo 99.9 1.2E-22 4.1E-27 192.8 17.7 201 18-233 18-222 (272)
52 2z81_A CD282 antigen, TOLL-lik 99.9 5.3E-23 1.8E-27 214.5 15.4 102 1-102 32-134 (549)
53 1wwl_A Monocyte differentiatio 99.9 7.8E-24 2.7E-28 205.1 8.1 197 1-231 101-311 (312)
54 2z62_A TOLL-like receptor 4, v 99.9 6.8E-23 2.3E-27 194.8 14.2 213 23-246 11-230 (276)
55 1p9a_G Platelet glycoprotein I 99.9 2.2E-22 7.6E-27 192.8 17.3 178 15-229 6-185 (290)
56 2o6q_A Variable lymphocyte rec 99.9 3.7E-22 1.3E-26 189.2 18.5 180 1-211 43-222 (270)
57 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-23 5.2E-28 203.6 8.6 93 5-104 20-112 (317)
58 3vq2_A TLR4, TOLL-like recepto 99.9 7E-23 2.4E-27 216.3 13.8 220 2-238 292-519 (606)
59 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-22 1.5E-26 210.6 19.3 110 1-110 82-192 (635)
60 2z81_A CD282 antigen, TOLL-lik 99.9 7.2E-23 2.5E-27 213.5 12.9 119 1-119 56-176 (549)
61 3oja_A Leucine-rich immune mol 99.9 3.5E-23 1.2E-27 212.8 9.5 205 2-229 41-250 (487)
62 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.8E-27 189.1 11.7 188 10-231 25-220 (239)
63 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.8E-27 189.2 11.5 191 1-226 37-236 (239)
64 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.7E-26 183.9 17.6 205 1-239 20-231 (251)
65 2z63_A TOLL-like receptor 4, v 99.9 6.6E-22 2.2E-26 207.1 17.9 119 1-119 34-153 (570)
66 1p9a_G Platelet glycoprotein I 99.9 1.2E-21 4E-26 187.8 18.1 192 1-230 16-209 (290)
67 2z63_A TOLL-like receptor 4, v 99.9 4.6E-22 1.6E-26 208.3 16.6 226 1-234 58-343 (570)
68 3bz5_A Internalin-J, INLJ; leu 99.9 4.3E-21 1.5E-25 195.6 21.3 204 1-235 48-252 (457)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-22 6.1E-27 196.0 10.6 219 1-242 40-264 (317)
70 4glp_A Monocyte differentiatio 99.9 7E-22 2.4E-26 191.1 13.3 180 18-230 90-286 (310)
71 4fmz_A Internalin; leucine ric 99.9 7.5E-21 2.6E-25 186.6 20.7 225 1-243 72-314 (347)
72 4fmz_A Internalin; leucine ric 99.9 4E-21 1.4E-25 188.5 18.3 210 1-233 116-328 (347)
73 1h6u_A Internalin H; cell adhe 99.9 5E-21 1.7E-25 185.0 17.9 205 3-231 27-232 (308)
74 1o6v_A Internalin A; bacterial 99.9 5.8E-21 2E-25 195.3 18.4 197 15-233 173-370 (466)
75 3oja_A Leucine-rich immune mol 99.9 5.9E-22 2E-26 203.6 10.4 213 11-246 22-243 (487)
76 1o6v_A Internalin A; bacterial 99.9 1.8E-20 6.2E-25 191.6 21.0 95 2-104 53-147 (466)
77 2o6s_A Variable lymphocyte rec 99.8 1.5E-20 5E-25 171.0 15.2 180 21-239 9-188 (208)
78 2ast_B S-phase kinase-associat 99.8 4.1E-22 1.4E-26 194.6 4.4 225 2-236 77-313 (336)
79 3bz5_A Internalin-J, INLJ; leu 99.8 2.2E-20 7.5E-25 190.3 17.2 202 1-234 70-282 (457)
80 2ca6_A RAN GTPase-activating p 99.8 2.3E-22 8E-27 200.5 -0.1 222 11-236 24-298 (386)
81 3goz_A Leucine-rich repeat-con 99.8 1.4E-21 4.9E-26 193.2 4.4 223 1-231 4-268 (362)
82 2o6s_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 168.0 13.5 173 2-215 14-186 (208)
83 4ay9_X Follicle-stimulating ho 99.8 7.4E-20 2.5E-24 180.0 16.0 219 3-234 17-241 (350)
84 1jl5_A Outer protein YOPM; leu 99.8 1.3E-19 4.4E-24 184.5 17.8 213 2-239 138-382 (454)
85 4glp_A Monocyte differentiatio 99.8 1.8E-20 6E-25 181.3 10.6 185 20-237 65-271 (310)
86 1h6u_A Internalin H; cell adhe 99.8 1.4E-19 4.8E-24 174.8 16.8 189 1-214 47-236 (308)
87 1jl5_A Outer protein YOPM; leu 99.8 2.7E-20 9.2E-25 189.5 11.7 204 1-230 17-251 (454)
88 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-19 4.6E-24 190.5 17.3 217 2-247 47-291 (622)
89 3g06_A SSPH2 (leucine-rich rep 99.8 6.2E-19 2.1E-23 185.4 22.0 206 19-247 40-271 (622)
90 1h6t_A Internalin B; cell adhe 99.8 1.4E-19 4.8E-24 173.3 15.5 183 3-231 32-215 (291)
91 1m9s_A Internalin B; cell inva 99.8 2.1E-19 7.3E-24 188.6 16.8 183 2-230 28-211 (605)
92 3cvr_A Invasion plasmid antige 99.8 9.9E-20 3.4E-24 189.3 13.0 192 14-240 49-254 (571)
93 2ca6_A RAN GTPase-activating p 99.8 2.8E-21 9.5E-26 192.7 0.6 224 1-233 38-320 (386)
94 2ast_B S-phase kinase-associat 99.8 2.7E-20 9.4E-25 181.7 4.6 212 1-226 53-282 (336)
95 2v9t_B SLIT homolog 2 protein 99.8 7.8E-19 2.7E-23 161.1 13.9 153 22-208 14-166 (220)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-19 2.4E-23 161.4 13.2 157 21-211 13-170 (220)
97 3goz_A Leucine-rich repeat-con 99.8 1.9E-20 6.5E-25 185.1 2.9 227 1-236 28-304 (362)
98 3e6j_A Variable lymphocyte rec 99.8 2.2E-18 7.7E-23 159.0 15.6 155 21-210 21-175 (229)
99 2xot_A Amphoterin-induced prot 99.8 2.3E-19 7.7E-24 177.3 9.4 176 21-230 20-203 (361)
100 2xot_A Amphoterin-induced prot 99.8 6.2E-19 2.1E-23 174.2 12.4 174 2-209 25-204 (361)
101 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.2E-23 165.2 15.2 167 1-213 52-218 (291)
102 2v9t_B SLIT homolog 2 protein 99.8 1.8E-18 6E-23 158.7 13.0 148 2-183 18-165 (220)
103 1z7x_W Ribonuclease inhibitor; 99.8 5.4E-21 1.8E-25 194.9 -4.6 83 148-230 315-412 (461)
104 4ezg_A Putative uncharacterize 99.8 1.2E-18 4.1E-23 157.0 11.4 85 16-104 41-125 (197)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-18 9.6E-23 157.4 13.1 151 1-185 17-168 (220)
106 3e6j_A Variable lymphocyte rec 99.8 8.2E-18 2.8E-22 155.3 14.8 150 2-186 26-175 (229)
107 1xeu_A Internalin C; cellular 99.8 5.2E-18 1.8E-22 160.0 13.4 171 17-231 17-187 (263)
108 3cvr_A Invasion plasmid antige 99.8 1E-17 3.6E-22 174.1 16.3 205 5-247 20-237 (571)
109 1xeu_A Internalin C; cellular 99.7 2.4E-18 8.2E-23 162.3 10.5 166 2-214 26-191 (263)
110 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.2E-22 175.3 16.5 163 1-208 49-211 (605)
111 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-20 3.8E-25 192.6 -7.4 105 1-105 62-184 (461)
112 4ezg_A Putative uncharacterize 99.7 6.7E-18 2.3E-22 152.0 11.6 155 39-230 40-195 (197)
113 4ay9_X Follicle-stimulating ho 99.7 2.5E-18 8.6E-23 169.1 9.5 216 1-227 36-257 (350)
114 1dce_A Protein (RAB geranylger 99.7 3.1E-19 1.1E-23 186.2 -4.1 181 16-234 346-551 (567)
115 1dce_A Protein (RAB geranylger 99.7 3.4E-19 1.2E-23 185.9 -5.7 93 148-245 443-538 (567)
116 1w8a_A SLIT protein; signaling 99.7 1.3E-16 4.3E-21 143.1 11.6 132 22-211 11-143 (192)
117 4b8c_D Glucose-repressible alc 99.7 6.9E-18 2.3E-22 181.3 3.4 120 59-213 216-335 (727)
118 4b8c_D Glucose-repressible alc 99.7 1.6E-17 5.4E-22 178.4 5.5 160 27-226 209-369 (727)
119 2ell_A Acidic leucine-rich nuc 99.7 1.9E-16 6.4E-21 138.6 10.7 84 19-104 24-108 (168)
120 1w8a_A SLIT protein; signaling 99.7 1.6E-16 5.5E-21 142.4 9.5 103 1-106 14-117 (192)
121 2je0_A Acidic leucine-rich nuc 99.6 8.3E-16 2.8E-20 131.6 7.7 85 18-104 16-101 (149)
122 2wfh_A SLIT homolog 2 protein 99.6 5.7E-15 1.9E-19 132.4 12.9 128 22-208 13-140 (193)
123 2wfh_A SLIT homolog 2 protein 99.6 7.7E-15 2.6E-19 131.5 12.8 83 148-230 56-140 (193)
124 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.6E-20 131.0 6.3 128 42-202 16-148 (149)
125 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 128.2 12.8 64 148-211 78-141 (177)
126 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 127.9 12.8 66 165-230 71-138 (177)
127 2ell_A Acidic leucine-rich nuc 99.6 4.1E-15 1.4E-19 130.0 9.1 104 1-106 30-135 (168)
128 1ds9_A Outer arm dynein; leuci 99.6 7.7E-17 2.6E-21 145.2 -4.2 155 15-207 14-185 (198)
129 1a9n_A U2A', U2A'; complex (nu 99.5 6.9E-15 2.4E-19 129.7 7.4 86 15-104 15-101 (176)
130 3sb4_A Hypothetical leucine ri 99.5 4.8E-14 1.7E-18 137.1 10.4 220 18-243 48-324 (329)
131 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 120.9 10.0 102 1-105 15-116 (170)
132 1ds9_A Outer arm dynein; leuci 99.5 7.3E-16 2.5E-20 138.7 -4.9 146 1-183 24-185 (198)
133 2r9u_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 121.1 9.7 101 1-104 18-118 (174)
134 3ogk_B Coronatine-insensitive 99.4 7.5E-15 2.6E-19 154.2 0.0 78 41-119 162-247 (592)
135 1a9n_A U2A', U2A'; complex (nu 99.4 1.4E-13 4.9E-18 121.2 7.8 133 38-207 14-153 (176)
136 3ogk_B Coronatine-insensitive 99.4 1.6E-14 5.3E-19 151.7 0.6 210 15-236 160-398 (592)
137 3sb4_A Hypothetical leucine ri 99.4 6.8E-13 2.3E-17 129.0 8.6 164 10-207 84-310 (329)
138 3g39_A Variable lymphocyte rec 99.4 2.9E-12 9.9E-17 112.2 10.7 107 20-160 10-116 (170)
139 2r9u_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 110.9 10.6 84 21-107 14-97 (174)
140 2ifg_A High affinity nerve gro 99.3 3.6E-12 1.2E-16 124.6 9.5 100 2-104 15-116 (347)
141 2p1m_B Transport inhibitor res 99.3 8.8E-14 3E-18 146.0 -4.5 84 13-98 259-345 (594)
142 2p1m_B Transport inhibitor res 99.2 1.8E-13 6.2E-18 143.6 -4.2 87 147-234 290-390 (594)
143 3un9_A NLR family member X1; l 99.2 2.4E-13 8.1E-18 134.4 -3.2 164 43-232 72-255 (372)
144 4fdw_A Leucine rich hypothetic 99.2 6.1E-11 2.1E-15 118.2 14.1 208 5-230 122-336 (401)
145 3un9_A NLR family member X1; l 99.2 1.3E-13 4.5E-18 136.3 -5.9 168 18-212 71-257 (372)
146 4fdw_A Leucine rich hypothetic 99.2 1.2E-10 4.2E-15 116.0 14.6 208 6-231 145-360 (401)
147 2ifg_A High affinity nerve gro 99.1 9.1E-11 3.1E-15 114.6 9.6 82 22-105 11-94 (347)
148 2ra8_A Uncharacterized protein 99.0 1.2E-10 4.2E-15 114.1 3.4 186 15-227 135-341 (362)
149 2ra8_A Uncharacterized protein 98.7 7.7E-09 2.6E-13 101.3 4.1 163 10-205 163-341 (362)
150 3rw6_A Nuclear RNA export fact 98.5 3.9E-08 1.3E-12 91.7 3.8 92 15-108 137-237 (267)
151 1io0_A Tropomodulin; LRR prote 98.4 6E-08 2.1E-12 85.7 2.5 94 12-105 29-137 (185)
152 3rw6_A Nuclear RNA export fact 98.4 8.5E-08 2.9E-12 89.4 1.7 80 16-97 167-257 (267)
153 1io0_A Tropomodulin; LRR prote 98.4 1.3E-07 4.4E-12 83.5 2.6 104 1-104 42-164 (185)
154 4gt6_A Cell surface protein; l 98.3 7.3E-06 2.5E-10 81.2 13.8 96 144-243 262-360 (394)
155 4fs7_A Uncharacterized protein 98.2 4.2E-06 1.4E-10 82.9 11.2 86 10-99 153-238 (394)
156 4fs7_A Uncharacterized protein 98.2 1.3E-05 4.5E-10 79.3 13.4 110 7-119 59-189 (394)
157 3e4g_A ATP synthase subunit S, 98.1 1.8E-06 6E-11 74.9 4.2 84 19-102 61-150 (176)
158 4gt6_A Cell surface protein; l 98.0 4.4E-05 1.5E-09 75.5 12.8 79 148-229 290-370 (394)
159 4h09_A Hypothetical leucine ri 97.5 0.00034 1.2E-08 68.5 10.2 157 14-207 189-345 (379)
160 3e4g_A ATP synthase subunit S, 97.5 4.1E-05 1.4E-09 66.3 2.4 80 1-80 67-153 (176)
161 4h09_A Hypothetical leucine ri 97.4 0.00068 2.3E-08 66.3 10.8 185 6-226 145-343 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0004 1.4E-08 61.2 5.1 88 15-102 37-137 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00025 8.6E-09 62.5 3.0 103 2-104 48-170 (197)
164 3rfe_A Platelet glycoprotein I 96.6 0.0037 1.3E-07 51.2 6.5 57 149-207 11-68 (130)
165 3rfe_A Platelet glycoprotein I 96.6 0.003 1E-07 51.7 5.8 36 44-79 32-67 (130)
166 2o14_A Hypothetical protein YX 93.4 0.39 1.3E-05 46.6 10.4 77 355-461 78-154 (375)
167 2w3j_A Carbohydrate binding mo 91.6 1.7 5.7E-05 35.8 10.5 85 357-461 43-128 (145)
168 2vzp_A Aocbm35, EXO-beta-D-glu 91.0 2 6.8E-05 34.3 10.2 84 357-459 43-127 (127)
169 2wz8_A Cellulosome protein doc 90.6 1.4 4.7E-05 36.8 9.1 93 359-461 54-148 (156)
170 2w47_A Lipolytic enzyme, G-D-S 90.2 2.3 7.8E-05 34.8 10.1 86 357-461 44-130 (144)
171 2w87_A Esterase D, XYL-CBM35; 88.3 2 6.9E-05 35.0 8.3 85 358-461 44-130 (139)
172 2cdp_A Beta-agarase 1; carbohy 62.2 56 0.0019 26.9 9.7 85 357-461 71-160 (160)
173 2lz0_A Uncharacterized protein 60.7 15 0.0005 27.9 5.3 46 6-52 7-52 (100)
174 2lz0_A Uncharacterized protein 51.9 23 0.0008 26.7 5.1 47 30-77 7-53 (100)
175 2bgo_A Endo-B1,4-mannanase 5C; 35.6 1.7E+02 0.0059 23.5 9.1 80 357-461 40-121 (140)
176 3jvf_C Interleukin-17 receptor 25.6 59 0.002 29.2 3.9 27 350-377 110-137 (286)
177 2xom_A Arabinogalactan endo-1, 21.4 2.4E+02 0.0081 22.8 6.7 16 423-438 120-135 (152)
178 3c12_A FLGD, flagellar protein 20.9 43 0.0015 26.9 1.9 27 347-373 66-92 (138)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.7e-31 Score=254.30 Aligned_cols=234 Identities=20% Similarity=0.333 Sum_probs=203.8
Q ss_pred CCCCCcCCC--CCchhhhcCCCCcEEeecc-ccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCC
Q 045177 1 SLLANRLTG--PIPKYLANISTLVNLTVQY-NQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDN 77 (461)
Q Consensus 1 ~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 77 (461)
+|++|++.+ .+|..|.++++|++|++++ |.+.+.+|..|.++++|++|+|++|.+++.+|..|.++++|++|+|++|
T Consensus 56 ~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 56 DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp EEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred ECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence 467899999 8999999999999999995 9999999999999999999999999999899999999999999999999
Q ss_pred cCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccc-cccccccceeeeecccCCCCCCCCCc-ccCCccccEEEccc
Q 045177 78 QFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLE-KFNGLVCMVFLFLRISDLNGPEATFP-QLGNKKMTNLILRN 155 (461)
Q Consensus 78 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~L~~L~L~~ 155 (461)
++++.+|..+..+++|++|++++|.+.+.+|..+..+. .|+. +.++. +.+....| .+...+|++|+|++
T Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~--------L~L~~-N~l~~~~~~~~~~l~L~~L~Ls~ 206 (313)
T 1ogq_A 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS--------MTISR-NRLTGKIPPTFANLNLAFVDLSR 206 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCE--------EECCS-SEEEEECCGGGGGCCCSEEECCS
T ss_pred ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcE--------EECcC-CeeeccCChHHhCCcccEEECcC
Confidence 99999999999999999999999999999999888876 6666 44444 22222222 24445599999999
Q ss_pred CcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCC
Q 045177 156 CNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p 233 (461)
|.+++.+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|.++ +++|+.|+|++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999999999999999999999999999976665 7889999999999999999999887 6789999999999999998
Q ss_pred ccccccccccee
Q 045177 234 ESSCQKRSVNLF 245 (461)
Q Consensus 234 ~~~c~~~~l~~~ 245 (461)
.. ..+..+..+
T Consensus 286 ~~-~~l~~L~~l 296 (313)
T 1ogq_A 286 QG-GNLQRFDVS 296 (313)
T ss_dssp CS-TTGGGSCGG
T ss_pred CC-ccccccChH
Confidence 85 445444443
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.96 E-value=2.5e-30 Score=228.11 Aligned_cols=118 Identities=26% Similarity=0.401 Sum_probs=95.4
Q ss_pred cCCchhhhhhhccCCCccccccccccCccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceE
Q 045177 337 LMSDSQLYTNARLSAISLTYYGFCLGNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKA 416 (461)
Q Consensus 337 ~~~~~~ly~t~r~~~~~~~~~~~~~~~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~ 416 (461)
.+.++++|||||+++..++|+....++|+|+|||||||+++ .+.|+|+|||+|||+++++||||.+++|+ .+|
T Consensus 50 ~~~~~~lY~TaR~~~~~~tY~f~v~~~G~Y~VrLhF~ei~~------~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~ 122 (174)
T 2jwp_A 50 NPEDQVLYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYF------AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STA 122 (174)
T ss_dssp CHHHHHTTTCCCCCCSCEEEEEECCSCEEEEEEEEEECCSC------CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSC
T ss_pred CCCCchhhhhhccCCCCeEEEEEeCCCeEEEEEEEEecccc------CCCCCeEeEEEECCEEeecCcCHHHhhCC-Cee
Confidence 34567899999999888887554445899999999999987 45799999999999999999999999966 789
Q ss_pred EEEEEEEEEeCCeEEEEEEEc-CCcceeccC-CC-cccCeeeeEEecC
Q 045177 417 IVKPFSAAVTNGTMEIRLYWA-GKGTTEIPF-KG-DYGPLISAISLNP 461 (461)
Q Consensus 417 ~~~~~~v~v~~~~l~i~f~~~-~~g~~~~p~-~~-~~~~~i~ai~v~~ 461 (461)
++|+|.+.|++|.|.|+..|+ ++|+.++.. +| .++|+|+||||++
T Consensus 123 ~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~~a~inaIEI~~ 170 (174)
T 2jwp_A 123 HDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIMK 170 (174)
T ss_dssp EEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSCSSSEEEEEEES
T ss_pred EEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCCCcEEEEEEEEe
Confidence 999999998766666555543 455555543 34 4679999999985
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.3e-29 Score=273.06 Aligned_cols=234 Identities=31% Similarity=0.457 Sum_probs=143.8
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|++++.+|..|.++++|+.|++++|.+++.+|..+..+++|++|+|++|++++.+|..+.++++|++|+|++|++++
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeee---------------------------ec-----
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLF---------------------------LR----- 129 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~---------------------------l~----- 129 (461)
.+|..++.+++|++|++++|++.+.+|..+..+++|+.|..-.... +.
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 5555555555555555555555555555555544444321100000 00
Q ss_pred -----------ccCC------------------CCCCCCCc-ccCCcc-ccEEEcccCcccccCCccccCCCcccEEecc
Q 045177 130 -----------ISDL------------------NGPEATFP-QLGNKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLS 178 (461)
Q Consensus 130 -----------~~~l------------------~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 178 (461)
+.+. +...+..| .+.... |+.|+|++|++++.+|..++.+++|+.|+|+
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 664 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCc
Confidence 0000 00000011 122233 7888888888888888888888888888888
Q ss_pred CCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcc
Q 045177 179 FNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAES 235 (461)
Q Consensus 179 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~ 235 (461)
+|+++|.+|..++.+++|+.|+|++|+++|.+|..+ ++.|++|||++|+++|.+|..
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 888888888888888888888888888888888877 567888888888888888864
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.2e-29 Score=272.01 Aligned_cols=238 Identities=30% Similarity=0.442 Sum_probs=200.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|++++.+|..|.++++|+.|++++|++++.+|..+.++++|++|+|++|.+++.+|..+..+++|++|+|++|+++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 36788888888999999999999999999999888999999999999999999999889999999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcc-cCCcc-ccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNKK-MTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~~-L~~L~L~~n~l 158 (461)
+.+|..+.++++|++|++++|++.+.+|.++..+++|+. +.+.+ +.....+|. +...+ |+.|+|++|.+
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~--------L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI--------LKLSN-NSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE--------EECCS-SCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE--------EECCC-CcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 889999999999999999999999899988888877777 55655 333333443 54444 89999999888
Q ss_pred cccCCccc----------------------------------------------------------------------cC
Q 045177 159 TGELPPYL----------------------------------------------------------------------GK 168 (461)
Q Consensus 159 ~~~~~~~~----------------------------------------------------------------------~~ 168 (461)
++.+|..+ ..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 87666543 33
Q ss_pred CCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccceee
Q 045177 169 MTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 169 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
+++|+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..+ ++.|+.|||++|+++|.+|..+..+..|..++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 5678899999999999999999999999999999999999999888 67889999999999999999887776666554
Q ss_pred c
Q 045177 247 S 247 (461)
Q Consensus 247 ~ 247 (461)
.
T Consensus 711 l 711 (768)
T 3rgz_A 711 L 711 (768)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=5.9e-29 Score=241.40 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=192.9
Q ss_pred CC-CCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 2 LL-ANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 2 Ls-~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
|+ .|++.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..+..+++|++|+|++|+++
T Consensus 83 L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp EEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence 45 38999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhccCC-CCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCc
Q 045177 81 GQIPSFIQNWT-KLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCN 157 (461)
Q Consensus 81 ~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~ 157 (461)
+.+|..+..++ +|++|++++|.+.+.+|..+..+. |+. +.+++ +.+....+ .+.... |++|+|++|.
T Consensus 163 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~--------L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF--------VDLSR-NMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE--------EECCS-SEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE--------EECcC-CcccCcCCHHHhcCCCCCEEECCCCc
Confidence 99999999998 999999999999999998887775 555 44444 22222222 244444 9999999999
Q ss_pred ccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc-cccCCccccccCc-ccCCCCcc
Q 045177 158 ITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM-LEKGDKIDLSYNN-FTDGSAES 235 (461)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~l~~LdLs~N~-l~~~~p~~ 235 (461)
+++.++. +..+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+|..- ++.++.|++++|+ +.+. |..
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~-p~~ 310 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS-PLP 310 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST-TSS
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCC-CCC
Confidence 9976665 7889999999999999999999999999999999999999998888764 6788999999998 5553 333
Q ss_pred cc
Q 045177 236 SC 237 (461)
Q Consensus 236 ~c 237 (461)
.|
T Consensus 311 ~C 312 (313)
T 1ogq_A 311 AC 312 (313)
T ss_dssp CC
T ss_pred CC
Confidence 35
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.5e-27 Score=230.38 Aligned_cols=222 Identities=18% Similarity=0.280 Sum_probs=183.4
Q ss_pred cCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEE
Q 045177 17 NISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKL 96 (461)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 96 (461)
..++++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 77888888999999999999999 88888999999999999999999 778899999999999
Q ss_pred EccCCCCccCCCCccccc---ccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcccccCCccccCCCc
Q 045177 97 FIQPSGLVGPIPSGIFSL---EKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNITGELPPYLGKMTT 171 (461)
Q Consensus 97 ~L~~n~l~~~~p~~~~~l---~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~ 171 (461)
++++|++.+.+|..+... ..+..+..|+.+++.-+.+. .+| .+.... |++|+|++|.++ .+|..+..+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~ 230 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC----CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTT
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC----cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCC
Confidence 999998888888877641 11122233333334433333 222 244444 999999999999 56777999999
Q ss_pred ccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccceee
Q 045177 172 LKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 172 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
|+.|+|++|++.+.+|..+..+++|++|+|++|.+.+.+|..+ +++|+.|+|++|++.+.+|+.+..+..+..+.
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 9999999999999999999999999999999999999999887 67889999999999999999988887776654
No 7
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5e-26 Score=222.23 Aligned_cols=225 Identities=23% Similarity=0.281 Sum_probs=186.6
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..+. ++|++|++++|+++
T Consensus 58 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 58 DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT 134 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCccc
Confidence 47889999888888999999999999999999877889999999999999999998 5665543 78999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCcc--CCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVG--PIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l 158 (461)
+..+..|.++++|++|++++|.+.. ..+..+..+++|+. +.+++. .+. .+|.....+|++|+|++|.+
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~--------L~l~~n-~l~-~l~~~~~~~L~~L~l~~n~l 204 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY--------IRIADT-NIT-TIPQGLPPSLTELHLDGNKI 204 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE--------EECCSS-CCC-SCCSSCCTTCSEEECTTSCC
T ss_pred ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE--------EECCCC-ccc-cCCccccccCCEEECCCCcC
Confidence 8888889999999999999999853 55666666666555 344331 111 12221224599999999999
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCccc
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESS 236 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~ 236 (461)
++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|++|+++ .+|.++ ++.|++|+|++|++++..+..+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 9888899999999999999999999877888999999999999999999 778776 5788999999999999777777
Q ss_pred ccc
Q 045177 237 CQK 239 (461)
Q Consensus 237 c~~ 239 (461)
|..
T Consensus 284 ~~~ 286 (330)
T 1xku_A 284 CPP 286 (330)
T ss_dssp SCS
T ss_pred CCc
Confidence 654
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.1e-26 Score=234.76 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=75.3
Q ss_pred cccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccc
Q 045177 147 KMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLS 224 (461)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs 224 (461)
+|++|++++|.+++.+|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+ +++|+.|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 47777777777777777778888888888888888887777778888888888888888876666655 5677788888
Q ss_pred cCcccCCCCcccccccccceee
Q 045177 225 YNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 225 ~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
+|++++..|..+..+..|..+.
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcccccChhhccccccccEEE
Confidence 8888877777666555555444
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=5.3e-26 Score=231.73 Aligned_cols=245 Identities=18% Similarity=0.170 Sum_probs=155.4
Q ss_pred CCCCcCCCCC-chhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhh--hhCCCCcCEEEeeCCc
Q 045177 2 LLANRLTGPI-PKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKT--FAKLTNMKDFRIGDNQ 78 (461)
Q Consensus 2 Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N~ 78 (461)
|++|.+.+.+ +..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+++..+.. |..+++|++|+|++|+
T Consensus 61 L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 61 VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp CCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB
T ss_pred CcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc
Confidence 3444444333 334555555555555555555444555555555555555555555433433 5566666666666666
Q ss_pred CCCCCchh-hccCCCCcEEEccCCCCccCCCCcccccc--ccc--------------------------ccccceeeeec
Q 045177 79 FTGQIPSF-IQNWTKLEKLFIQPSGLVGPIPSGIFSLE--KFN--------------------------GLVCMVFLFLR 129 (461)
Q Consensus 79 l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~--------------------------~L~~l~~~~l~ 129 (461)
+++..|.. +.++++|++|++++|.+.+..|..+..+. .++ .+..++.+++.
T Consensus 141 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred cCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 66554543 56666666666666666655555443331 000 00112222221
Q ss_pred ccCC------------------------------------------------------------CCCCCCCcc-cCCcc-
Q 045177 130 ISDL------------------------------------------------------------NGPEATFPQ-LGNKK- 147 (461)
Q Consensus 130 ~~~l------------------------------------------------------------~~~~~~~~~-l~~~~- 147 (461)
-+.+ +.+....+. +...+
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 300 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence 1110 011111122 44444
Q ss_pred ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCcccccc
Q 045177 148 MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSY 225 (461)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~ 225 (461)
|++|+|++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..|..+ +++|++|+|++
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 9999999999998889899999999999999999998888999999999999999999998778777 67899999999
Q ss_pred CcccCCCCcccccccccceee
Q 045177 226 NNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 226 N~l~~~~p~~~c~~~~l~~~~ 246 (461)
|++++..+..+..+..|..+.
T Consensus 381 N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 381 NQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp SCCSCCCTTTTTTCTTCCEEE
T ss_pred CccccCCHhHhccCCcccEEE
Confidence 999986665555555555444
No 10
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.2e-25 Score=219.89 Aligned_cols=224 Identities=21% Similarity=0.235 Sum_probs=173.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|.+..|..|.++++|++|++++|.+++..|..|.++++|++|+|++|.++ .+|..+. ++|++|++++|+++
T Consensus 60 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR 136 (332)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC
Confidence 46778888777778888888888888888888777888888888888888888888 5555443 78888888888888
Q ss_pred CCCchhhccCCCCcEEEccCCCCcc--CCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVG--PIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l 158 (461)
...+..|..+++|++|++++|.+.. ..|..+..+ +|+. +.++.. .+.. +|.-...+|++|+|++|.+
T Consensus 137 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~--------L~l~~n-~l~~-l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY--------LRISEA-KLTG-IPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC--------CBCCSS-BCSS-CCSSSCSSCSCCBCCSSCC
T ss_pred ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE--------EECcCC-CCCc-cCccccCCCCEEECCCCcC
Confidence 6666778888888888888888853 555555554 4444 333331 1111 2221124599999999999
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCccc
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESS 236 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~ 236 (461)
++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|.++ +++|+.|+|++|++++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 9877788999999999999999999877888999999999999999999 777776 5678999999999998777666
Q ss_pred ccc
Q 045177 237 CQK 239 (461)
Q Consensus 237 c~~ 239 (461)
|..
T Consensus 285 ~~~ 287 (332)
T 2ft3_A 285 CPV 287 (332)
T ss_dssp SCS
T ss_pred ccc
Confidence 654
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=4.7e-27 Score=249.59 Aligned_cols=229 Identities=21% Similarity=0.341 Sum_probs=190.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeecccc--------------------------------------------------
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQ-------------------------------------------------- 30 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-------------------------------------------------- 30 (461)
+|++|++.|.+|++|++|++|+.|+|++|.
T Consensus 87 ~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 87 SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp ECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred EecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 578999999999999999999999999884
Q ss_pred ----------------------------CCCCCchhhcCCCCCCEEEccCCcCCCC-----------------chhhhh-
Q 045177 31 ----------------------------FSGELPEELGSLLNLEKLHLSSNNFTGE-----------------LPKTFA- 64 (461)
Q Consensus 31 ----------------------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~- 64 (461)
+++ +|..|+++++|++|+|++|.+++. +|..++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 344 788899999999999999999975 888888
Q ss_pred -CCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCC-Ccc-CCCCcccccccccccccceeeeecccCCCCCCCCCc
Q 045177 65 -KLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSG-LVG-PIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP 141 (461)
Q Consensus 65 -~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~ 141 (461)
++++|++|+|++|++.+.+|..|.++++|++|++++|+ +++ .+|..++.+..+..+..++.+++.-+.+. .+|
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----~ip 321 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----TFP 321 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----SCC
T ss_pred cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC----ccC
Confidence 99999999999999999999999999999999999998 887 88988888743333444444444433332 344
Q ss_pred c---cCCcc-ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCC-CCEEEccCCcCCCCCCcccc-
Q 045177 142 Q---LGNKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYE-VDYIYFTGNLLTGAIPPWML- 215 (461)
Q Consensus 142 ~---l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~- 215 (461)
. +...+ |++|+|++|.+++.+| .+..+++|+.|+|++|+++ .+|..+..+++ |++|+|++|+++ .+|..+.
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence 3 55555 9999999999998888 8889999999999999999 78888999998 999999999999 7787662
Q ss_pred ---ccCCccccccCcccCCCCcccc
Q 045177 216 ---EKGDKIDLSYNNFTDGSAESSC 237 (461)
Q Consensus 216 ---~~l~~LdLs~N~l~~~~p~~~c 237 (461)
++|+.|+|++|++++.+|..++
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred cccCccCEEECcCCcCCCcchhhhc
Confidence 2678999999999998887665
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=8.3e-26 Score=229.61 Aligned_cols=216 Identities=21% Similarity=0.224 Sum_probs=134.0
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEc
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFI 98 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 98 (461)
++++.|+|++|++++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56667777777777666666777777777777777776555566777777777777777777555556677777777777
Q ss_pred cCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcccccCCccccCCCcccEEe
Q 045177 99 QPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNITGELPPYLGKMTTLKVLD 176 (461)
Q Consensus 99 ~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (461)
++|.+....+..+..+.+|+. +.+.+++......+ .+.... |++|+|++|+++ .+| .+..+++|+.|+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~--------L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~ 213 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRR--------LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELD 213 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCE--------EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEE
T ss_pred CCCcccccCHHHhhhCcccCE--------eCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEE
Confidence 777766544445555555555 44443222221111 133333 777777777776 444 356667777777
Q ss_pred ccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccce
Q 045177 177 LSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVNL 244 (461)
Q Consensus 177 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~ 244 (461)
|++|+|++..|..|..+++|+.|+|++|+|++..+..+ +++|+.|+|++|++++..+..+..+..|..
T Consensus 214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 77777776666667777777777777777765555554 456667777777777655544444444433
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=8.3e-26 Score=231.86 Aligned_cols=244 Identities=22% Similarity=0.228 Sum_probs=184.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|.+|.++++|+.|+|++|.++...+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++
T Consensus 62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC
T ss_pred ECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc
Confidence 47889999888999999999999999999998666667888999999999999998777888888999999999999888
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccc------------------cceeeeecccCCCCCCCCCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLV------------------CMVFLFLRISDLNGPEATFPQ 142 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~------------------~l~~~~l~~~~l~~~~~~~~~ 142 (461)
+..+..|..+++|++|++++|.+.+..+..+..+.+|+.|. .|+. +.+++........+.
T Consensus 142 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~--L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV--LEISHWPYLDTMTPN 219 (477)
T ss_dssp EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE--EEEECCTTCCEECTT
T ss_pred eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce--eeCCCCccccccCcc
Confidence 77788888888888888888888754444455444444321 1111 222221111111111
Q ss_pred -cCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCC
Q 045177 143 -LGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGD 219 (461)
Q Consensus 143 -l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~ 219 (461)
+...+|++|+|++|+++...+..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+ +++|+
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 222358899999999985554678899999999999999998778888999999999999999998777777 57889
Q ss_pred ccccccCcccCCCCcccccccccceee
Q 045177 220 KIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 220 ~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
.|+|++|++++..+..+..+..|..+.
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEE
Confidence 999999999986665555444444443
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=9.2e-26 Score=230.06 Aligned_cols=215 Identities=18% Similarity=0.197 Sum_probs=133.3
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEc
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFI 98 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 98 (461)
++|+.|+|++|.|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46677777777777666666777777777777777777656666777777777777777777555556677777777777
Q ss_pred cCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcccccCCccccCCCcccEEe
Q 045177 99 QPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNITGELPPYLGKMTTLKVLD 176 (461)
Q Consensus 99 ~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (461)
++|.+....+..+..+.+|+. +.+.+++......+ .+.... |++|+|++|++++ +| .+..+++|+.|+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~--------L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 224 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMR--------LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCE--------EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCcceeCHhHHhcCCcccE--------EeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEE
Confidence 777766544445555555555 44443222221111 133333 6777777777763 33 356667777777
Q ss_pred ccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccc
Q 045177 177 LSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVN 243 (461)
Q Consensus 177 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~ 243 (461)
|++|+|++..|..|..+++|+.|+|++|++++..|..+ +++|+.|+|++|++++..+..+..+..|.
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 77777776666667777777777777777765555555 45666777777777665554444444333
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.4e-25 Score=238.15 Aligned_cols=215 Identities=20% Similarity=0.277 Sum_probs=145.4
Q ss_pred CCCCCcCCCC-----------------Cchhhh--cCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCc-CCC-Cc
Q 045177 1 SLLANRLTGP-----------------IPKYLA--NISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN-FTG-EL 59 (461)
Q Consensus 1 ~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~ 59 (461)
+|++|++++. +|..++ ++++|++|+|++|.+.+.+|..|.++++|++|+|++|+ +++ .+
T Consensus 212 ~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~l 291 (636)
T 4eco_A 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291 (636)
T ss_dssp EEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHH
T ss_pred ECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccc
Confidence 4678999886 899988 99999999999999999999999999999999999998 987 78
Q ss_pred hhhhhCC------CCcCEEEeeCCcCCCCCch--hhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeeccc
Q 045177 60 PKTFAKL------TNMKDFRIGDNQFTGQIPS--FIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRIS 131 (461)
Q Consensus 60 p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~ 131 (461)
|..++.+ ++|++|+|++|+++ .+|. .+..+++|++|++++|.+.|.+| .+..+.+|+.| .++
T Consensus 292 p~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L--------~L~ 361 (636)
T 4eco_A 292 KDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL--------NLA 361 (636)
T ss_dssp HHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE--------ECC
T ss_pred hHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE--------ECC
Confidence 9888887 99999999999999 7888 89999999999999999998888 77777666653 222
Q ss_pred CCCCCCCCCcc-cC-Ccc-ccEEEcccCcccccCCccccCCC--cccEEeccCCcccCCCCcccc-------CCCCCCEE
Q 045177 132 DLNGPEATFPQ-LG-NKK-MTNLILRNCNITGELPPYLGKMT--TLKVLDLSFNKLSGHIPSNFD-------DLYEVDYI 199 (461)
Q Consensus 132 ~l~~~~~~~~~-l~-~~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L 199 (461)
+. .+. .+|. +. ..+ |++|+|++|.++ .+|..+..+. +|+.|++++|++++.+|..+. .+++|++|
T Consensus 362 ~N-~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 362 YN-QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp SS-EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CC-ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 21 000 1111 11 122 444555555544 4444443332 444555555544444444444 34444444
Q ss_pred EccCCcCCCCCCccc---cccCCccccccCccc
Q 045177 200 YFTGNLLTGAIPPWM---LEKGDKIDLSYNNFT 229 (461)
Q Consensus 200 ~L~~N~l~~~~p~~~---~~~l~~LdLs~N~l~ 229 (461)
+|++|+++ .+|..+ +++|+.|+|++|+++
T Consensus 439 ~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 439 NLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp ECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ECcCCccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 44444444 333322 233444444444444
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=4.7e-25 Score=220.37 Aligned_cols=224 Identities=18% Similarity=0.187 Sum_probs=116.0
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|+|++..+..|..+++|+.|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|++++|++++
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 44555554444455555555555555555554444445555555555555555553333334555555555555555554
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCccccccccccc-------------ccceeeeecccCCCCCCCCCcccCCccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGL-------------VCMVFLFLRISDLNGPEATFPQLGNKKM 148 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L-------------~~l~~~~l~~~~l~~~~~~~~~l~~~~L 148 (461)
..+..+..+++|++|++++|.+.+.. +..+++|+.| ..++.+++.-+.+. .++.....+|
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~L 228 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN----VVRGPVNVEL 228 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC----EEECCCCSSC
T ss_pred cChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeee----eccccccccc
Confidence 44445555555555555555554321 1111111110 00111111111110 0111111236
Q ss_pred cEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccC
Q 045177 149 TNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYN 226 (461)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N 226 (461)
+.|+|++|.+++. ..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++ +|..+ +++|+.|+|++|
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 7777777777643 456677777777777777776667777777777777777777763 33333 456777777777
Q ss_pred cccCCCCccc
Q 045177 227 NFTDGSAESS 236 (461)
Q Consensus 227 ~l~~~~p~~~ 236 (461)
++++ +|..+
T Consensus 306 ~l~~-~~~~~ 314 (390)
T 3o6n_A 306 HLLH-VERNQ 314 (390)
T ss_dssp CCCC-CGGGH
T ss_pred ccee-cCccc
Confidence 7764 34443
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-25 Score=217.34 Aligned_cols=225 Identities=21% Similarity=0.200 Sum_probs=159.3
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCC--chhhhhCCCCcCEEEeeCCcC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGE--LPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l 79 (461)
.++++++. +|..+ .++|+.|+|++|.++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+
T Consensus 14 c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 14 CNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp CCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred cCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 34555553 44433 25788888888888854444578888888888888888732 256677788888888888888
Q ss_pred CCCCchhhccCCCCcEEEccCCCCccCCC-CcccccccccccccceeeeecccCCCCCCCCCcc-cCCcc-ccEEEcccC
Q 045177 80 TGQIPSFIQNWTKLEKLFIQPSGLVGPIP-SGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNKK-MTNLILRNC 156 (461)
Q Consensus 80 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~~-L~~L~L~~n 156 (461)
+ .+|..+..+++|++|++++|.+.+..+ ..+..+.+|+. +.+++. ......+. +.... |++|+|++|
T Consensus 91 ~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~--------L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 91 I-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY--------LDISHT-HTRVAFNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp E-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCE--------EECTTS-CCEECSTTTTTTCTTCCEEECTTC
T ss_pred c-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCE--------EECCCC-cCCccchhhcccCcCCCEEECCCC
Confidence 7 566678888888888888888875443 34555555554 444432 12212222 33333 888888888
Q ss_pred cccc-cCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCC
Q 045177 157 NITG-ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 157 ~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p 233 (461)
.+++ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+ +++|+.|+|++|++++..|
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 8876 577788888888888888888887778888888888888888888886555454 5678888888888888777
Q ss_pred cccccc
Q 045177 234 ESSCQK 239 (461)
Q Consensus 234 ~~~c~~ 239 (461)
..+...
T Consensus 241 ~~~~~~ 246 (306)
T 2z66_A 241 QELQHF 246 (306)
T ss_dssp SSCCCC
T ss_pred HHHHhh
Confidence 765544
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=229.85 Aligned_cols=237 Identities=18% Similarity=0.170 Sum_probs=170.2
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
||++|+|++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++...+..|.++++|++|+|++|+++
T Consensus 38 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 57899999998999999999999999999999888999999999999999999999666677899999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l 158 (461)
+..+..|..+++|++|++++|.+.+..+..+..+.+|+. +.+.+. .+....+ .+.... |+.|+|++|.+
T Consensus 118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ--------LTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE--------EEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred cCChhHccccccCCEEECCCCccceeChhhccCCCCCCE--------EECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence 888899999999999999999998877777777766665 333321 1111111 122222 55555555555
Q ss_pred cccCCccccCCC------------------------cccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc
Q 045177 159 TGELPPYLGKMT------------------------TLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 159 ~~~~~~~~~~l~------------------------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 214 (461)
.+..+..|..++ +|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 544444444444 55555555566663333456667777777777777775444444
Q ss_pred --cccCCccccccCcccCCCCcccccccccceee
Q 045177 215 --LEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 215 --~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
+++|+.|+|++|++++..|..+..+..|..++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 45667777777777776666665554444443
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=6.3e-25 Score=223.12 Aligned_cols=220 Identities=18% Similarity=0.159 Sum_probs=187.8
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..+..|.++++|+.|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|++|+++
T Consensus 70 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 70 NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 47899999999999999999999999999999888889999999999999999999777778999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCC-cccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPS-GIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l 158 (461)
...+..|..+++|++|++++|...+.++. .+..+.+|+. +.+++. .+ ..+|.+.... |++|+|++|.+
T Consensus 150 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~--------L~L~~n-~l-~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY--------LNLAMC-NL-REIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE--------EECTTS-CC-SSCCCCTTCSSCCEEECTTSCC
T ss_pred ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe--------ecCCCC-cC-ccccccCCCcccCEEECCCCcc
Confidence 87788999999999999999655444444 4555666555 444442 11 1344555555 99999999999
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccC
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~ 230 (461)
++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+...+..+ +++|+.|+|++|++..
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 98889999999999999999999998889999999999999999999996555554 5678999999999864
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.1e-25 Score=213.20 Aligned_cols=218 Identities=19% Similarity=0.200 Sum_probs=179.0
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCc-CC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQ-FT 80 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~ 80 (461)
.++++++. +|..+ .++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|+ ++
T Consensus 18 c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 18 CPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 45566664 45433 4789999999999997777789999999999999999997778899999999999999997 88
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l 158 (461)
...+..+..+++|++|++++|.+.+..|..+..+.+|+. +.+++. .+....+ .+.... |++|+|++|++
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY--------LYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--------EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE--------EECCCC-cccccCHhHhccCCCccEEECCCCcc
Confidence 666889999999999999999999777777777777666 444442 2222222 244444 99999999999
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCC
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~ 231 (461)
++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+ +++++.|+|++|++...
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 97777779999999999999999998889999999999999999999996555545 57889999999999864
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=6.9e-25 Score=209.63 Aligned_cols=213 Identities=16% Similarity=0.185 Sum_probs=153.0
Q ss_pred cEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCC
Q 045177 22 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPS 101 (461)
Q Consensus 22 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 101 (461)
+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 57788888887 555433 467888888888888666677888888888888888888777788888888888888888
Q ss_pred C-CccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcccccCCccccCCCcccEEecc
Q 045177 102 G-LVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLS 178 (461)
Q Consensus 102 ~-l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 178 (461)
. +....|..+..+.+|+. +.+++. .+....+ .+.... |++|+|++|.+++..+..+..+++|+.|+|+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~--------L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHT--------LHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCE--------EECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCccccCHHHhcCCcCCCE--------EECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECC
Confidence 7 66555666666666665 444442 2222222 244334 8888888888886666667888888888888
Q ss_pred CCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccceee
Q 045177 179 FNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 179 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
+|++++..+..+..+++|+.|+|++|.+++..|..+ +++|+.|+|++|++++..+..+..+..|..+.
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 888886666668888888888888888887767666 46778888888888876555555555544443
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=6.4e-25 Score=223.83 Aligned_cols=220 Identities=16% Similarity=0.144 Sum_probs=187.2
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|..|.++++|+.|+|++|.+++..+..|.++++|++|+|++|+++...+..|..+++|++|+|++|+++
T Consensus 81 ~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 81 NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred ECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 58899999999999999999999999999999888899999999999999999999777778999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCC-cccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPS-GIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNI 158 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l 158 (461)
...+..|..+++|+.|++++|...+.++. .+..+.+|+. +++.-+.+. .++.+.... |++|+|++|.+
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~------L~L~~n~l~----~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY------LNLGMCNIK----DMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE------EECTTSCCS----SCCCCTTCTTCCEEECTTSCC
T ss_pred eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE------EECCCCccc----ccccccccccccEEECcCCcC
Confidence 77778999999999999999655444544 4555555555 233333322 234455544 99999999999
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccC
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~ 230 (461)
++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+ +++|+.|+|++|++..
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 98889999999999999999999998889999999999999999999996555554 5678999999998874
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.5e-25 Score=232.10 Aligned_cols=230 Identities=18% Similarity=0.179 Sum_probs=110.5
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|+|++..|..|+.+++|+.|+|++|.+++..|..|+++++|++|+|++|.+++..+..|..+++|++|+|++|.+++
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC
Confidence 44445544444445555555555555555554444444555555555555555553333334455555555555555554
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCccccccccccc-------------ccceeeeecccCCCCCCCCCcccCCccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGL-------------VCMVFLFLRISDLNGPEATFPQLGNKKM 148 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L-------------~~l~~~~l~~~~l~~~~~~~~~l~~~~L 148 (461)
..|..|..+++|++|++++|.+.+.... .+.+|+.| ..+..+++.-+.+. .++.....+|
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~----~~~~~~~~~L 234 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN----VVRGPVNVEL 234 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC----EEECSCCSCC
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCccccccCCchhheeeccCCccc----ccccccCCCC
Confidence 4444455555555555555554432111 11111110 00111111111110 0011111236
Q ss_pred cEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccC
Q 045177 149 TNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYN 226 (461)
Q Consensus 149 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N 226 (461)
+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++ +|..+ +++|+.|+|++|
T Consensus 235 ~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 666666666653 2455666666666666666666666666666666666666666663 33333 456666666666
Q ss_pred cccCCCCccccccccc
Q 045177 227 NFTDGSAESSCQKRSV 242 (461)
Q Consensus 227 ~l~~~~p~~~c~~~~l 242 (461)
+++. +|..+..+..|
T Consensus 312 ~l~~-i~~~~~~l~~L 326 (597)
T 3oja_B 312 HLLH-VERNQPQFDRL 326 (597)
T ss_dssp CCCC-CGGGHHHHTTC
T ss_pred CCCc-cCcccccCCCC
Confidence 6663 44444333333
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=7.7e-26 Score=245.72 Aligned_cols=228 Identities=19% Similarity=0.298 Sum_probs=185.2
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEee-ccccCCCC---------------------------------------------
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTV-QYNQFSGE--------------------------------------------- 34 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~L-s~n~l~~~--------------------------------------------- 34 (461)
+|++|++.|.+|+.|++|++|+.|+| ++|.++|.
T Consensus 329 ~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 329 SLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp ECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred ECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 57899999999999999999999999 77754333
Q ss_pred -------------------------------CchhhcCCCCCCEEEccCCcCCC-----------------Cchhhhh--
Q 045177 35 -------------------------------LPEELGSLLNLEKLHLSSNNFTG-----------------ELPKTFA-- 64 (461)
Q Consensus 35 -------------------------------~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~-- 64 (461)
+|..|+++++|++|+|++|.+++ .+|..++
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~ 488 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGG
T ss_pred hhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhc
Confidence 77889999999999999999997 2788877
Q ss_pred CCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCC-Ccc-CCCCcccccc-cccccccceeeeecccCCCCCCCCCc
Q 045177 65 KLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSG-LVG-PIPSGIFSLE-KFNGLVCMVFLFLRISDLNGPEATFP 141 (461)
Q Consensus 65 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-~L~~L~~l~~~~l~~~~l~~~~~~~~ 141 (461)
++++|++|+|++|++.+.+|..|.++++|++|+|++|+ +++ .+|..+..+. .+..++.|+.+.+.-+.+. .+|
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----EFP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----BCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC----ccC
Confidence 99999999999999999999999999999999999998 887 7888888776 4444444444444444433 344
Q ss_pred c---cCCcc-ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCC-CCEEEccCCcCCCCCCcccc-
Q 045177 142 Q---LGNKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYE-VDYIYFTGNLLTGAIPPWML- 215 (461)
Q Consensus 142 ~---l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~- 215 (461)
. +.... |+.|+|++|.++ .+| .+..+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|+++ .+|..+.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 3 54444 999999999998 777 7889999999999999998 78888888888 999999999998 7777662
Q ss_pred ---ccCCccccccCcccCCCCccc
Q 045177 216 ---EKGDKIDLSYNNFTDGSAESS 236 (461)
Q Consensus 216 ---~~l~~LdLs~N~l~~~~p~~~ 236 (461)
++|+.|+|++|++++.+|...
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCS
T ss_pred cccCCCCEEECcCCcCCCccccch
Confidence 237789999999988776544
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=9.3e-25 Score=218.25 Aligned_cols=232 Identities=13% Similarity=0.090 Sum_probs=179.0
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
+++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++.
T Consensus 52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 131 (390)
T 3o6n_A 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131 (390)
T ss_dssp EESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence 56777877667778999999999999999998777899999999999999999998888889999999999999999996
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCC-CCCcc-------------cCC-c
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPE-ATFPQ-------------LGN-K 146 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~-~~~~~-------------l~~-~ 146 (461)
..+..|..+++|++|++++|.+.+..|..+..+++|+.|. +.-+.+.... ..++. +.. .
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~------l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 205 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ------LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE------CCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCS
T ss_pred CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE------CCCCcCCccccccccccceeecccccccccCCCC
Confidence 6556679999999999999999977777777777766632 1111111110 00111 111 2
Q ss_pred cccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccc
Q 045177 147 KMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLS 224 (461)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs 224 (461)
.|++|++++|.++.. |.. ..++|+.|++++|++++. ..+..+++|++|+|++|.+++..|..+ +++|+.|+|+
T Consensus 206 ~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 206 AVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp SCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred cceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 377788888887743 332 357899999999999953 578999999999999999998778777 6789999999
Q ss_pred cCcccCCCCccccccccccee
Q 045177 225 YNNFTDGSAESSCQKRSVNLF 245 (461)
Q Consensus 225 ~N~l~~~~p~~~c~~~~l~~~ 245 (461)
+|++++. |........|..+
T Consensus 281 ~n~l~~~-~~~~~~l~~L~~L 300 (390)
T 3o6n_A 281 NNRLVAL-NLYGQPIPTLKVL 300 (390)
T ss_dssp SSCCCEE-ECSSSCCTTCCEE
T ss_pred CCcCccc-CcccCCCCCCCEE
Confidence 9999874 4433333344433
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=5.3e-25 Score=241.26 Aligned_cols=249 Identities=17% Similarity=0.138 Sum_probs=187.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|++.+..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++.
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence 46788888888888888999999999999998887888888999999999999988777888889999999999999988
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCccccccc------------------------------------ccccccce
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEK------------------------------------FNGLVCMV 124 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~------------------------------------L~~L~~l~ 124 (461)
...+..|..+++|++|++++|.+.+ ++. +..+.. +..++.|+
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNALTT-IHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCCSCC-CSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred ccChhhhcCCCCCCEEECCCCCCCc-ccC-CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccc
Confidence 7777788888999999998888763 221 111100 01222333
Q ss_pred eeeecccCCCCCCCCCcccCCccccEEEcccCccc-----ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEE
Q 045177 125 FLFLRISDLNGPEATFPQLGNKKMTNLILRNCNIT-----GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYI 199 (461)
Q Consensus 125 ~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 199 (461)
.+++.-+.+.............+|+.|+|++|.++ +..+..|..+++|+.|+|++|+|++..|..|..+++|+.|
T Consensus 430 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 33333333222211111112234788888888776 3344668889999999999999998888899999999999
Q ss_pred EccCCcCCCCCCccccccCCccccccCcccCCCCcccccccccceeecccCC
Q 045177 200 YFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAESSCQKRSVNLFASFSKG 251 (461)
Q Consensus 200 ~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~~~~~~ 251 (461)
+|++|+|++..|..+.++|+.|||++|++++..|..+..+..+.+.+|...+
T Consensus 510 ~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 510 SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp EEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCC
T ss_pred ECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCccc
Confidence 9999999987777777899999999999999999887766666666654433
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.1e-24 Score=212.57 Aligned_cols=217 Identities=22% Similarity=0.341 Sum_probs=188.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+++ .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|++.
T Consensus 87 ~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 87 ELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred EccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence 46789998 67888999999999999999999 88999999999999999999999 78989999999999999999988
Q ss_pred CCCchhhcc---------CCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccE
Q 045177 81 GQIPSFIQN---------WTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTN 150 (461)
Q Consensus 81 ~~~p~~~~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~ 150 (461)
+.+|..+.. +++|++|++++|.+. .+|..+..+.+|+. +.+++ +.+....+.+.... |++
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~--------L~L~~-N~l~~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS--------LKIRN-SPLSALGPAIHHLPKLEE 233 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE--------EEEES-SCCCCCCGGGGGCTTCCE
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE--------EEccC-CCCCcCchhhccCCCCCE
Confidence 888887765 999999999999998 78888777776666 44444 22222223354444 999
Q ss_pred EEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcc
Q 045177 151 LILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNF 228 (461)
Q Consensus 151 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l 228 (461)
|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|++|+|++|.+.+.+|.++ +++++.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988 66788888887766
Q ss_pred cC
Q 045177 229 TD 230 (461)
Q Consensus 229 ~~ 230 (461)
..
T Consensus 314 ~~ 315 (328)
T 4fcg_A 314 AQ 315 (328)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.7e-24 Score=228.68 Aligned_cols=233 Identities=17% Similarity=0.187 Sum_probs=178.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchh-hhhCCCCcCEEEeeCCcC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPK-TFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l 79 (461)
+|++|+++ .+|..+..+++|+.|++++|.+++..|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|++
T Consensus 284 ~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 284 DLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp ECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred eccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 47888888 6788889999999999999999977788899999999999999998866554 588899999999999999
Q ss_pred CCCC--chhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcc-cCCcc-ccEEEccc
Q 045177 80 TGQI--PSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNKK-MTNLILRN 155 (461)
Q Consensus 80 ~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~~-L~~L~L~~ 155 (461)
++.. +..+..+++|++|++++|.+.+..|..+..+++|+. +.++.........+. +...+ |++|++++
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL--------LDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE--------EECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe--------EECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 8655 678889999999999999988777877777777666 444442211111111 33333 88888888
Q ss_pred CcccccCCccccCCCcccEEeccCCcccCC---CCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccC
Q 045177 156 CNITGELPPYLGKMTTLKVLDLSFNKLSGH---IPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~ 230 (461)
|.+++..|..+..+++|+.|+|++|++++. .+..+..+++|+.|+|++|++++..|..+ +++|+.|+|++|++++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 888877777788888888888888888752 33567778888888888888887666666 5677788888888888
Q ss_pred CCCccccccccc
Q 045177 231 GSAESSCQKRSV 242 (461)
Q Consensus 231 ~~p~~~c~~~~l 242 (461)
..|..+..+..+
T Consensus 515 ~~~~~l~~l~~L 526 (606)
T 3t6q_A 515 SSIEALSHLKGI 526 (606)
T ss_dssp GGGGGGTTCCSC
T ss_pred CChhHhCccccc
Confidence 777776666555
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=2e-24 Score=228.04 Aligned_cols=237 Identities=19% Similarity=0.188 Sum_probs=196.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|++++..+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 260 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp ECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred EeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 47899999999999999999999999999999 78888999999999999999999878889999999999999999998
Q ss_pred CCCch-hhccCCCCcEEEccCCCCccCC--CCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEccc
Q 045177 81 GQIPS-FIQNWTKLEKLFIQPSGLVGPI--PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRN 155 (461)
Q Consensus 81 ~~~p~-~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~ 155 (461)
+.++. .+..+++|++|++++|.+.+.. +..+..+++|+. +.++.. ......+ .+.... |++|++++
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~--------L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS--------LNLSYN-EPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCE--------EECCSC-SCEEECTTTTTTCTTCSEEECTT
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCE--------EECCCC-cCCcCCHHHhcCCccCCeEECCC
Confidence 66654 5999999999999999998654 666667666666 444442 2222222 244444 99999999
Q ss_pred CcccccCCc-cccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCC---CCccc--cccCCccccccCccc
Q 045177 156 CNITGELPP-YLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGA---IPPWM--LEKGDKIDLSYNNFT 229 (461)
Q Consensus 156 n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---~p~~~--~~~l~~LdLs~N~l~ 229 (461)
|.+++..+. .+..+++|+.|++++|++++..|..+..+++|++|+|++|++++. .+..+ +++|+.|+|++|+++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 999977654 488999999999999999988899999999999999999999862 22334 678999999999999
Q ss_pred CCCCcccccccccceeec
Q 045177 230 DGSAESSCQKRSVNLFAS 247 (461)
Q Consensus 230 ~~~p~~~c~~~~l~~~~~ 247 (461)
+..|..+..+..|..++.
T Consensus 490 ~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EECTTTTTTCTTCCEEEC
T ss_pred ccChhhhccccCCCEEEC
Confidence 988888776666665553
No 30
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=2.8e-24 Score=207.48 Aligned_cols=222 Identities=17% Similarity=0.190 Sum_probs=186.6
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCC--CchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCc
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGE--LPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQ 78 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 78 (461)
+|++|+|+...+..|.++++|+.|+|++|.++.. .+..+..+++|++|+|++|.++ .+|..+..+++|++|++++|+
T Consensus 34 ~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 34 ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN 112 (306)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSE
T ss_pred ECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCc
Confidence 4789999977777789999999999999999833 3677889999999999999999 677789999999999999999
Q ss_pred CCCCCc-hhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEccc
Q 045177 79 FTGQIP-SFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRN 155 (461)
Q Consensus 79 l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~ 155 (461)
+++..+ ..+..+++|++|++++|.+.+..+..+..+.+|+. +.+.+........+ .+.... |++|+|++
T Consensus 113 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 113 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV--------LKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE--------EECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE--------EECCCCccccccchhHHhhCcCCCEEECCC
Confidence 996655 68999999999999999999888887877777776 44444211111122 244444 99999999
Q ss_pred CcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--c-ccCCccccccCcccCC
Q 045177 156 CNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--L-EKGDKIDLSYNNFTDG 231 (461)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~-~~l~~LdLs~N~l~~~ 231 (461)
|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+ + +.++.|+|++|++++.
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99998888999999999999999999997777789999999999999999998888776 3 4789999999999874
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=3.2e-24 Score=229.65 Aligned_cols=230 Identities=23% Similarity=0.194 Sum_probs=160.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|+++++|++|+|++|+++
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence 57899999988889999999999999999999888889999999999999999999666667999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcc----cCCccccEEEcccC
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ----LGNKKMTNLILRNC 156 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~----l~~~~L~~L~L~~n 156 (461)
+..|..|.++++|++|++++|.+.+..|..+..+.+|+. +.+... .+....+. +...+|++|++++|
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~--------L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE--------LLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCE--------EECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ccChhHccccCCCCEEECCCCcccccCchhhcccccCCE--------EEccCC-cccccCHHHhhccccccccEEECCCC
Confidence 777788999999999999999998887777777776666 333331 11111111 11233666666666
Q ss_pred cccccCCccccCC---------------------------CcccEEeccCCcccCCCCccccCCCC--CCEEEccCCcCC
Q 045177 157 NITGELPPYLGKM---------------------------TTLKVLDLSFNKLSGHIPSNFDDLYE--VDYIYFTGNLLT 207 (461)
Q Consensus 157 ~l~~~~~~~~~~l---------------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~ 207 (461)
.+++..|..+..+ ++|+.|++++|++++..|.++..++. |+.|+|++|+++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 6665555444332 33455555555555555555555433 666666666665
Q ss_pred CCCCccc--cccCCccccccCcccCCCCcccccc
Q 045177 208 GAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQK 239 (461)
Q Consensus 208 ~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~ 239 (461)
+..|..+ +++|+.|+|++|++++..|..++.+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCC
Confidence 5444444 3455566666666665555444333
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=4.5e-25 Score=217.57 Aligned_cols=232 Identities=15% Similarity=0.146 Sum_probs=167.5
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
+++|+++. +|..+. ++|+.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++
T Consensus 38 ~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 38 GSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp CCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred CCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 56677764 555443 588999999999987666688899999999999999987777788899999999999999986
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCC--cccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPS--GIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCN 157 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~ 157 (461)
..+..|.++++|++|++++|++.. +|. .+..+++|+. +.+++........+ .+...+ |++|++++|.
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~--------L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI--------LRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE--------EEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE--------EECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 666668889999999999998874 443 5566666655 44443211222111 244444 8899999999
Q ss_pred ccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCc-------------------------
Q 045177 158 ITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP------------------------- 212 (461)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~------------------------- 212 (461)
+++..|..+..+++|++|++++|+++...+..+..+++|+.|+|++|.+++..+.
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9888888888889999999999988743333445578888888888888864322
Q ss_pred ------cc--cccCCccccccCcccCCCCcc-cccccccceee
Q 045177 213 ------WM--LEKGDKIDLSYNNFTDGSAES-SCQKRSVNLFA 246 (461)
Q Consensus 213 ------~~--~~~l~~LdLs~N~l~~~~p~~-~c~~~~l~~~~ 246 (461)
++ +++|+.|+|++|+++. +|.. +..+..|..+.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIW 307 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEE
Confidence 22 4578899999999985 5554 35555555443
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.9e-24 Score=220.37 Aligned_cols=242 Identities=17% Similarity=0.150 Sum_probs=173.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|..|.++++|++|+|++|++++..|+.|.++++|++|+|++|+++ .+|.. .+++|++|+|++|+++
T Consensus 27 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 27 NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCS
T ss_pred ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccc
Confidence 57888898888888999999999999999998777888999999999999999888 56655 7888888888888888
Q ss_pred C-CCchhhccCCCCcEEEccCCCCcc-------------------------CCCCcccccc-------------------
Q 045177 81 G-QIPSFIQNWTKLEKLFIQPSGLVG-------------------------PIPSGIFSLE------------------- 115 (461)
Q Consensus 81 ~-~~p~~~~~l~~L~~L~L~~n~l~~-------------------------~~p~~~~~l~------------------- 115 (461)
+ ..|..|+++++|++|++++|.+.+ ..|..+..+.
T Consensus 104 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 183 (520)
T 2z7x_B 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183 (520)
T ss_dssp SCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC
T ss_pred cccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhh
Confidence 6 467888888888888888877642 2233322211
Q ss_pred -------ccccc------------------------c---------------------------cceeeeecccCCC-CC
Q 045177 116 -------KFNGL------------------------V---------------------------CMVFLFLRISDLN-GP 136 (461)
Q Consensus 116 -------~L~~L------------------------~---------------------------~l~~~~l~~~~l~-~~ 136 (461)
+|+.+ . .++.+.+.-+.+. ..
T Consensus 184 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 263 (520)
T 2z7x_B 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263 (520)
T ss_dssp CCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC
T ss_pred hhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcc
Confidence 00000 0 1111111100000 00
Q ss_pred CC-----------------------CCc---------------------------ccCCc-cccEEEcccCcccccCCcc
Q 045177 137 EA-----------------------TFP---------------------------QLGNK-KMTNLILRNCNITGELPPY 165 (461)
Q Consensus 137 ~~-----------------------~~~---------------------------~l~~~-~L~~L~L~~n~l~~~~~~~ 165 (461)
.. .+| ..... +|++|++++|.+++.+|..
T Consensus 264 p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred ccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhh
Confidence 00 001 00233 3999999999999888999
Q ss_pred ccCCCcccEEeccCCcccC--CCCccccCCCCCCEEEccCCcCCCCCCccc---cccCCccccccCcccCCCCcccc-cc
Q 045177 166 LGKMTTLKVLDLSFNKLSG--HIPSNFDDLYEVDYIYFTGNLLTGAIPPWM---LEKGDKIDLSYNNFTDGSAESSC-QK 239 (461)
Q Consensus 166 ~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~~~l~~LdLs~N~l~~~~p~~~c-~~ 239 (461)
+..+++|+.|+|++|++++ .+|..+..+++|++|+|++|.+++.+|... ++.|+.|+|++|++++..|..+. .+
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L 423 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTC
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccC
Confidence 9999999999999999996 456788999999999999999997677653 46788999999999887776653 34
Q ss_pred ccccee
Q 045177 240 RSVNLF 245 (461)
Q Consensus 240 ~~l~~~ 245 (461)
..|++.
T Consensus 424 ~~L~Ls 429 (520)
T 2z7x_B 424 KVLDLH 429 (520)
T ss_dssp CEEECC
T ss_pred CEEECC
Confidence 444443
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=5.7e-25 Score=213.13 Aligned_cols=195 Identities=21% Similarity=0.211 Sum_probs=108.8
Q ss_pred cCCCCcEEeeccccCCCCCchhh--cCCCCCCEEEccCCcCCCCchhhhhCC-----CCcCEEEeeCCcCCCCCchhhcc
Q 045177 17 NISTLVNLTVQYNQFSGELPEEL--GSLLNLEKLHLSSNNFTGELPKTFAKL-----TNMKDFRIGDNQFTGQIPSFIQN 89 (461)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~ 89 (461)
++++|++|+|++|++++.+|..+ ..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..|..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 34455555555555544444433 4445555555555555433 4444443 44555555555554444444455
Q ss_pred CCCCcEEEccCCCCccCC--CCcccccccccccccceeeeecccCCCCCCCCCcccCC-ccccEEEcccCcccc---cCC
Q 045177 90 WTKLEKLFIQPSGLVGPI--PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGN-KKMTNLILRNCNITG---ELP 163 (461)
Q Consensus 90 l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~-~~L~~L~L~~n~l~~---~~~ 163 (461)
+++|++|++++|++.+.+ |..+ .+.. .+|++|+|++|++++ ...
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISAL------------------------------CPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHS------------------------------CTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CCCCCEEECCCCCcCcchHHHHHH------------------------------HhccCCCCCEEECCCCcCcchHHHHH
Confidence 555555555554433210 0000 0022 237778888888772 112
Q ss_pred ccccCCCcccEEeccCCcccCCCC-ccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCCccccccccc
Q 045177 164 PYLGKMTTLKVLDLSFNKLSGHIP-SNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAESSCQKRSV 242 (461)
Q Consensus 164 ~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~~~c~~~~l 242 (461)
..+..+++|+.|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+.++++.|||++|++++. |. +..+..|
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 334567788888888888876554 44556778888888888887 67776667777888888888775 44 4444444
Q ss_pred cee
Q 045177 243 NLF 245 (461)
Q Consensus 243 ~~~ 245 (461)
..+
T Consensus 299 ~~L 301 (312)
T 1wwl_A 299 GNL 301 (312)
T ss_dssp EEE
T ss_pred CEE
Confidence 433
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.2e-23 Score=203.51 Aligned_cols=214 Identities=21% Similarity=0.260 Sum_probs=176.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|..|.++++|+.|++++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 47899999999999999999999999999999 5665554 79999999999999888888999999999999999996
Q ss_pred C--CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCC-cccCCcc-ccEEEcccC
Q 045177 81 G--QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATF-PQLGNKK-MTNLILRNC 156 (461)
Q Consensus 81 ~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~-~~l~~~~-L~~L~L~~n 156 (461)
. ..+..+..+++|++|++++|.+. .+|..+. .+|+. +.+++. .+.... ..+.... |++|+|++|
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~--------L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTE--------LHLDGN-KITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSE--------EECTTS-CCCEECTGGGTTCTTCCEEECCSS
T ss_pred ccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCE--------EECCCC-cCCccCHHHhcCCCCCCEEECCCC
Confidence 4 67788999999999999999998 4665543 44444 444442 222222 2344444 999999999
Q ss_pred cccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCcccc--------ccCCccccccCcc
Q 045177 157 NITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWML--------EKGDKIDLSYNNF 228 (461)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--------~~l~~LdLs~N~l 228 (461)
.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|+|++..+..+. ..++.|++++|++
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 999888888999999999999999999 7888999999999999999999966555552 4566899999988
Q ss_pred cC
Q 045177 229 TD 230 (461)
Q Consensus 229 ~~ 230 (461)
..
T Consensus 306 ~~ 307 (330)
T 1xku_A 306 QY 307 (330)
T ss_dssp CG
T ss_pred cc
Confidence 64
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.7e-23 Score=198.53 Aligned_cols=196 Identities=24% Similarity=0.259 Sum_probs=130.8
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
+++++++. +|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|+++.
T Consensus 23 ~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 23 CSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp CTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred ccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence 45555553 443332 456666666666665555566666666666666666664444455666666666666666665
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE 161 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 161 (461)
..+..|..+++|++|++++|.+.+..+..+..+ .+|++|+|++|.+++.
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-------------------------------TKLTYLSLGYNELQSL 148 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC-------------------------------TTCCEEECCSSCCCCC
T ss_pred CCHhHcccccCCCEEECCCCccCeeCHHHhCcC-------------------------------cCCCEEECCCCcCCcc
Confidence 555566666666666666666654333222211 2377788888888866
Q ss_pred CCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCC
Q 045177 162 LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~ 231 (461)
.+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..+ +++|+.|+|++|++...
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 66667888888888888888887666678888888888888888885444444 46778888888887653
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=1.3e-24 Score=236.07 Aligned_cols=218 Identities=21% Similarity=0.269 Sum_probs=178.7
Q ss_pred CCcCCCCCchhhhcCCCCcEEeeccccCCC-----------------CCchhhc--CCCCCCEEEccCCcCCCCchhhhh
Q 045177 4 ANRLTGPIPKYLANISTLVNLTVQYNQFSG-----------------ELPEELG--SLLNLEKLHLSSNNFTGELPKTFA 64 (461)
Q Consensus 4 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~ 64 (461)
.|++++ +|..|+++++|+.|+|++|.+++ .+|+.++ ++++|++|+|++|.+.+.+|..|.
T Consensus 434 ~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 478887 89999999999999999999997 3888877 999999999999999999999999
Q ss_pred CCCCcCEEEeeCCc-CCC-CCchhhccCC-------CCcEEEccCCCCccCCCC--cccccccccccccceeeeecccCC
Q 045177 65 KLTNMKDFRIGDNQ-FTG-QIPSFIQNWT-------KLEKLFIQPSGLVGPIPS--GIFSLEKFNGLVCMVFLFLRISDL 133 (461)
Q Consensus 65 ~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~~l~~~~l~~~~l 133 (461)
++++|++|+|++|+ +++ .+|..+..++ +|++|+|++|.+. .+|. .+..+.+|+. +.+++.
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~--------L~Ls~N 583 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL--------LDCVHN 583 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE--------EECTTS
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE--------EECCCC
Confidence 99999999999998 887 7888777766 9999999999998 8888 7887777776 555552
Q ss_pred CCCCCCCcccCCcc-ccEEEcccCcccccCCccccCCCc-ccEEeccCCcccCCCCccccCCCC--CCEEEccCCcCCCC
Q 045177 134 NGPEATFPQLGNKK-MTNLILRNCNITGELPPYLGKMTT-LKVLDLSFNKLSGHIPSNFDDLYE--VDYIYFTGNLLTGA 209 (461)
Q Consensus 134 ~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~ 209 (461)
.+. .+|.+.... |+.|+|++|.++ .+|..+..+++ |+.|+|++|+++ .+|..+..++. |+.|+|++|++++.
T Consensus 584 -~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 584 -KVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp -CCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred -Ccc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence 222 455665555 999999999998 78888888888 999999999998 78887776654 89999999998876
Q ss_pred CCccc-------cccCCccccccCcccCCCCccc
Q 045177 210 IPPWM-------LEKGDKIDLSYNNFTDGSAESS 236 (461)
Q Consensus 210 ~p~~~-------~~~l~~LdLs~N~l~~~~p~~~ 236 (461)
+|... ..+|+.|+|++|+++. +|...
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~ 692 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQK-FPTEL 692 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHH
T ss_pred cccchhhhccccCCCcCEEEccCCcCCc-cCHHH
Confidence 65432 2356788888888884 56543
No 38
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=9e-24 Score=200.62 Aligned_cols=215 Identities=17% Similarity=0.184 Sum_probs=146.0
Q ss_pred CCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCC
Q 045177 3 LANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQ 82 (461)
Q Consensus 3 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 82 (461)
..+.+... ..+..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+++ ++ .+..+++|++|+|++|.+++.
T Consensus 27 ~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 27 KKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp TCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCC
T ss_pred cCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcc
Confidence 34444443 34667899999999999988 343 58889999999999999985 33 688999999999999999987
Q ss_pred CchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcc-cCCcc-ccEEEcccCcccc
Q 045177 83 IPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNKK-MTNLILRNCNITG 160 (461)
Q Consensus 83 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~~-L~~L~L~~n~l~~ 160 (461)
.+..|..+++|++|++++|++.+..+..+..+.+|+. +.+.+. .+....+. +.... |++|+|++|++++
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--------L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY--------LNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE--------EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE--------EECCCC-ccCccCHHHhccCccCCEEECCCCCcCc
Confidence 7778899999999999999998665555555555554 333331 11111111 22223 6666666666665
Q ss_pred cCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCCcccc
Q 045177 161 ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAESSC 237 (461)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~~~c 237 (461)
..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+..| .++.|+++.|+++|.+|.+++
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-----TTHHHHHHHHHTGGGBBCTTS
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-----HHHHHHHHHHhCCCcccCccc
Confidence 555556666666666666666666555556666666666666666664433 355666666666666665543
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=2e-23 Score=218.69 Aligned_cols=243 Identities=15% Similarity=0.058 Sum_probs=175.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|..|.++++|++|+|++|++++..|+.|.++++|++|+|++|+++ .+|.. .+++|++|+|++|+++
T Consensus 58 ~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 58 SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS
T ss_pred ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc
Confidence 57899999888889999999999999999999888888999999999999999998 66665 7899999999999998
Q ss_pred CC-CchhhccCCCCcEEEccCCCCccCC-------------------------CCcccccc-------------------
Q 045177 81 GQ-IPSFIQNWTKLEKLFIQPSGLVGPI-------------------------PSGIFSLE------------------- 115 (461)
Q Consensus 81 ~~-~p~~~~~l~~L~~L~L~~n~l~~~~-------------------------p~~~~~l~------------------- 115 (461)
+. .|..|+++++|++|++++|.+.+.. |..+..+.
T Consensus 135 ~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 135 VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214 (562)
T ss_dssp BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE
T ss_pred ccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhh
Confidence 63 4678899999999999888875421 22221111
Q ss_pred -------ccccc----------------------c---------------------------cceeeeecccCCC-CCCC
Q 045177 116 -------KFNGL----------------------V---------------------------CMVFLFLRISDLN-GPEA 138 (461)
Q Consensus 116 -------~L~~L----------------------~---------------------------~l~~~~l~~~~l~-~~~~ 138 (461)
+|+.+ . .++.+.+.-+.+. ....
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 294 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC
T ss_pred hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc
Confidence 00000 0 1111111111100 0000
Q ss_pred CC-----------------------c---------------------------ccCCcc-ccEEEcccCcccccCCcccc
Q 045177 139 TF-----------------------P---------------------------QLGNKK-MTNLILRNCNITGELPPYLG 167 (461)
Q Consensus 139 ~~-----------------------~---------------------------~l~~~~-L~~L~L~~n~l~~~~~~~~~ 167 (461)
.+ | ...... |++|++++|.+++.+|..+.
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc
Confidence 00 0 002333 99999999999988899999
Q ss_pred CCCcccEEeccCCcccCC--CCccccCCCCCCEEEccCCcCCCCCCccc---cccCCccccccCcccCCCCcccc-cccc
Q 045177 168 KMTTLKVLDLSFNKLSGH--IPSNFDDLYEVDYIYFTGNLLTGAIPPWM---LEKGDKIDLSYNNFTDGSAESSC-QKRS 241 (461)
Q Consensus 168 ~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~~~l~~LdLs~N~l~~~~p~~~c-~~~~ 241 (461)
.+++|+.|+|++|++++. +|..+..+++|+.|+|++|++++.+|... +++++.|+|++|++++..|..+. .+..
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~ 454 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV 454 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSE
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCE
Confidence 999999999999999963 35678899999999999999997677653 46788999999999887776553 4444
Q ss_pred cceee
Q 045177 242 VNLFA 246 (461)
Q Consensus 242 l~~~~ 246 (461)
|++..
T Consensus 455 L~L~~ 459 (562)
T 3a79_B 455 LDLHN 459 (562)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 44433
No 40
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.9e-24 Score=203.45 Aligned_cols=210 Identities=19% Similarity=0.177 Sum_probs=149.7
Q ss_pred CchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccC
Q 045177 11 IPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNW 90 (461)
Q Consensus 11 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 90 (461)
+|..+. ++|+.|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 455443 579999999999997777789999999999999999997777789999999999999999998888889999
Q ss_pred CCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcccccCCccccC
Q 045177 91 TKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNITGELPPYLGK 168 (461)
Q Consensus 91 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~~~~~ 168 (461)
++|++|++++|.+.+..+..+..+.+|+. +.+++.......+| .+...+ |++|+|++|++++..+..+..
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKE--------LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCE--------EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ccccEEECCCCCccccCchhcccCCCCCE--------EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 99999999999998665555665555555 33333211111222 233333 777777777777666666665
Q ss_pred CCccc----EEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCC
Q 045177 169 MTTLK----VLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 169 l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~ 231 (461)
+++|+ .|++++|++++..+..+. ..+|+.|+|++|++++..+..+ +++++.|+|++|++++.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred hhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 55555 777777777754444433 3467777777777774433333 45667777777777754
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.6e-23 Score=204.75 Aligned_cols=226 Identities=24% Similarity=0.255 Sum_probs=180.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|..|.++++|+.|++++|.++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.++
T Consensus 84 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 84 VLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp ECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred ECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 47899999999999999999999999999999 5666554 89999999999999777778999999999999999996
Q ss_pred --CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCC-cccCCcc-ccEEEcccC
Q 045177 81 --GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATF-PQLGNKK-MTNLILRNC 156 (461)
Q Consensus 81 --~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~-~~l~~~~-L~~L~L~~n 156 (461)
+..+..+..+ +|++|++++|.+.+ +|..+. .+|+. +.+++. .+.... ..+.... |++|+|++|
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~--------L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE--------LHLDHN-KIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSC--------CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred cCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCE--------EECCCC-cCCccCHHHhcCCCCCCEEECCCC
Confidence 3677888888 99999999999984 666554 34444 444442 222222 2344444 999999999
Q ss_pred cccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCcccc--------ccCCccccccCcc
Q 045177 157 NITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWML--------EKGDKIDLSYNNF 228 (461)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--------~~l~~LdLs~N~l 228 (461)
.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..+. ..++.|++++|++
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 999888888999999999999999999 7888899999999999999999966555442 3467899999998
Q ss_pred c--CCCCcccccccccc
Q 045177 229 T--DGSAESSCQKRSVN 243 (461)
Q Consensus 229 ~--~~~p~~~c~~~~l~ 243 (461)
. +..|..+..+..+.
T Consensus 307 ~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRL 323 (332)
T ss_dssp CGGGSCGGGGTTBCCST
T ss_pred cccccCcccccccchhh
Confidence 7 44444443333333
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=212.18 Aligned_cols=223 Identities=20% Similarity=0.183 Sum_probs=178.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..+..|.++++|+.|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|+++
T Consensus 58 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 58 DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS
T ss_pred ECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc
Confidence 57899999888889999999999999999999888888999999999999999999766667999999999999999999
Q ss_pred CCCc-hhhccCCCCcEEEccCCC-CccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccC
Q 045177 81 GQIP-SFIQNWTKLEKLFIQPSG-LVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNC 156 (461)
Q Consensus 81 ~~~p-~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n 156 (461)
...+ ..+..+++|++|++++|. +....+..+..+++|+. +.+++. ......+ .+...+ |++|++++|
T Consensus 138 ~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~--------L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE--------LEIDAS-DLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE--------EEEEET-TCCEECTTTTTTCSEEEEEEEECS
T ss_pred ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE--------EECCCC-CcCccCHHHHhccccCCeecCCCC
Confidence 5444 489999999999999995 66555666766666665 444431 2222222 244444 999999999
Q ss_pred cccccCCccccCCCcccEEeccCCcccCCC-------------------------------CccccCCCCCCEEEccCCc
Q 045177 157 NITGELPPYLGKMTTLKVLDLSFNKLSGHI-------------------------------PSNFDDLYEVDYIYFTGNL 205 (461)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------------------p~~l~~l~~L~~L~L~~N~ 205 (461)
.++......+..+++|+.|+|++|++++.. |..+..+++|+.|+|++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 997444444556899999999999998642 3456788999999999999
Q ss_pred CCCCCCccc---cccCCccccccCcccCCCC
Q 045177 206 LTGAIPPWM---LEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 206 l~~~~p~~~---~~~l~~LdLs~N~l~~~~p 233 (461)
++ .+|..+ +++|+.|+|++|++++..|
T Consensus 289 l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99 677654 5678899999999987533
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=4e-24 Score=225.80 Aligned_cols=99 Identities=24% Similarity=0.175 Sum_probs=71.1
Q ss_pred cccEEEcccCccccc--CCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCC-ccc--cccCCcc
Q 045177 147 KMTNLILRNCNITGE--LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP-PWM--LEKGDKI 221 (461)
Q Consensus 147 ~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~--~~~l~~L 221 (461)
+|++|++++|.+++. ++..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..| ..+ +++|+.|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 377888888888755 3667778888888888888887 456777778888888888888876665 333 5667788
Q ss_pred ccccCcccCCCCcccccccccceee
Q 045177 222 DLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 222 dLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
++++|++++..|..+..+..|..+.
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred ECcCCCCCccchhhhcCCCCCCEEE
Confidence 8888888777776665555544443
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=8.9e-24 Score=219.05 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=101.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
|+++|+|+. +|..+. ++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 6 ~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 6 DRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp ECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 588999994 676665 89999999999999888889999999999999999999888999999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCcc-CCCCccccccccccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVG-PIPSGIFSLEKFNGL 120 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 120 (461)
.+|.. .+++|++|++++|.+.+ .+|..+..+.+|+.|
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 56666 89999999999999987 578888887777654
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.2e-23 Score=221.89 Aligned_cols=236 Identities=18% Similarity=0.151 Sum_probs=181.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|.|++..|..|+++++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.++
T Consensus 105 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 57899999999999999999999999999999666666899999999999999999888889999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccC-CCCcccccc----ccc-----ccccceeeeecccCCCCCCCCCcccCCcc-cc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGP-IPSGIFSLE----KFN-----GLVCMVFLFLRISDLNGPEATFPQLGNKK-MT 149 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~----~L~-----~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~ 149 (461)
+.. +..+++|+.|++++|.+.+. .|..+..+. .+. ....++.+.+.-+.+.. .+.+.... |+
T Consensus 185 ~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~----~~~l~~l~~L~ 257 (597)
T 3oja_B 185 HVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD----TAWLLNYPGLV 257 (597)
T ss_dssp BCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC----CGGGGGCTTCS
T ss_pred CcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC----ChhhccCCCCC
Confidence 653 55677788888887777541 111111110 000 00123333333333222 23444444 99
Q ss_pred EEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCc
Q 045177 150 NLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNN 227 (461)
Q Consensus 150 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~ 227 (461)
.|+|++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+ +++|+.|+|++|+
T Consensus 258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence 99999999999989999999999999999999995 6777788999999999999999 677766 6789999999999
Q ss_pred ccCCCCccccccccccee
Q 045177 228 FTDGSAESSCQKRSVNLF 245 (461)
Q Consensus 228 l~~~~p~~~c~~~~l~~~ 245 (461)
+++..+..+..+..|.+.
T Consensus 336 l~~~~~~~~~~L~~L~l~ 353 (597)
T 3oja_B 336 IVTLKLSTHHTLKNLTLS 353 (597)
T ss_dssp CCCCCCCTTCCCSEEECC
T ss_pred CCCcChhhcCCCCEEEee
Confidence 988644433344444443
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=227.39 Aligned_cols=243 Identities=17% Similarity=0.155 Sum_probs=176.3
Q ss_pred CCCCCcCCCCC-chhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhh--hhCCCCcCEEEeeCC
Q 045177 1 SLLANRLTGPI-PKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKT--FAKLTNMKDFRIGDN 77 (461)
Q Consensus 1 ~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~N 77 (461)
||++|++.+.+ |.+|.++++|++|+|++|.+++..|+.|.++++|++|+|++|.+++.+|.. |.++++|++|+|++|
T Consensus 54 dLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp EECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred eCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 46777665555 788999999999999999999888899999999999999999998766654 889999999999999
Q ss_pred cCCCCCc-hhhccCCCCcEEEccCCCCccCCCCccccc--cccccccc------------------------ceeeeecc
Q 045177 78 QFTGQIP-SFIQNWTKLEKLFIQPSGLVGPIPSGIFSL--EKFNGLVC------------------------MVFLFLRI 130 (461)
Q Consensus 78 ~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~~------------------------l~~~~l~~ 130 (461)
.+++..+ ..|+++++|++|++++|.+.+..+..+..+ .+|+.|.. ++.+++.-
T Consensus 134 ~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCC
Confidence 9987654 578999999999999999988777776655 33332210 22222211
Q ss_pred cCCCCCC-C------------------------------------CCcccCCccccEEEcccCcccccCCccccCCCccc
Q 045177 131 SDLNGPE-A------------------------------------TFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLK 173 (461)
Q Consensus 131 ~~l~~~~-~------------------------------------~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (461)
+.+.... . .+..+...+|+.|+|++|.+.+..+..+..+++|+
T Consensus 214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 293 (844)
T 3j0a_A 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293 (844)
T ss_dssp CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCC
T ss_pred CcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCC
Confidence 1110000 0 00001123488888888888877778888888888
Q ss_pred EEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccc
Q 045177 174 VLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVN 243 (461)
Q Consensus 174 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~ 243 (461)
.|+|++|++++..|..|..+++|++|+|++|++++..|..+ +++|+.|+|++|++++..+..+..+..|.
T Consensus 294 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~ 365 (844)
T 3j0a_A 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365 (844)
T ss_dssp EEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC
T ss_pred EEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC
Confidence 88888888887777788888888888888888886667666 56778888888888776665554443333
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=6.1e-23 Score=217.18 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
||++|+|+++.|.+|.++++|++|+|++|+|++..|+.|.++++|++|+|++|+|++..+..|.++++|++|+|++|+++
T Consensus 58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 46677777666667777777777777777776555566677777777777777766555556666666666666666666
Q ss_pred CCCchhhccCCCCcEEEccCCCCc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~ 104 (461)
+..+..|+++++|++|++++|.+.
T Consensus 138 ~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 138 SLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCChhhhhcCcccCeeccccCccc
Confidence 544445555555555555555543
No 48
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.4e-23 Score=194.19 Aligned_cols=176 Identities=22% Similarity=0.221 Sum_probs=85.0
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
.+.++++++.++ .+|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 445555555555 3443332 3555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCC
Q 045177 101 SGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFN 180 (461)
Q Consensus 101 n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 180 (461)
|.+.+..+..+..+. +|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 93 n~l~~~~~~~~~~l~-------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 93 NQLASLPLGVFDHLT-------------------------------QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp SCCCCCCTTTTTTCT-------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccccChhHhcccC-------------------------------CCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 555432222222111 1344445555554333333444455555555555
Q ss_pred cccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccC
Q 045177 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~ 230 (461)
+|++..+..|..+++|++|+|++|++++..+..+ +++|+.|+|++|++++
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 5543333344444555555555555543333232 2344455555555443
No 49
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=9.1e-23 Score=218.35 Aligned_cols=244 Identities=15% Similarity=0.173 Sum_probs=166.6
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|++++..|.+|+++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|.++
T Consensus 55 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp ECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence 47889999988999999999999999999998655557899999999999999998777778899999999999999998
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccc--ccccccccc------------------ce----------------
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFS--LEKFNGLVC------------------MV---------------- 124 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~~------------------l~---------------- 124 (461)
+..+..+.++++|++|++++|.+.+..+..+.. +.+|+.|.. ++
T Consensus 135 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 214 (680)
T 1ziw_A 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214 (680)
T ss_dssp CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHH
T ss_pred ccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHH
Confidence 888888888888888888888887655443321 123322110 00
Q ss_pred ---------eeeecccCCCCCCCCCc-ccC---CccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCcccc
Q 045177 125 ---------FLFLRISDLNGPEATFP-QLG---NKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFD 191 (461)
Q Consensus 125 ---------~~~l~~~~l~~~~~~~~-~l~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 191 (461)
...+.+.+ +......+ .+. ..+|++|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.
T Consensus 215 ~~~~l~~~~L~~L~L~~-n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (680)
T 1ziw_A 215 LCLELANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293 (680)
T ss_dssp HHHHHTTSCCCEEECTT-SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT
T ss_pred HHHHhhhccccEEEccC-CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc
Confidence 00111111 00111111 111 12377777777777766667777777777777777777776677777
Q ss_pred CCCCCCEEEccCCcCCC-----CCCc----cc--cccCCccccccCcccCCCCccccccccccee
Q 045177 192 DLYEVDYIYFTGNLLTG-----AIPP----WM--LEKGDKIDLSYNNFTDGSAESSCQKRSVNLF 245 (461)
Q Consensus 192 ~l~~L~~L~L~~N~l~~-----~~p~----~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~ 245 (461)
.+++|+.|+|++|...+ .+|. .+ +++++.|+|++|++++..|..+..+..|..+
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 77777777777665443 2222 22 4567788888888888776666555444433
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=3.3e-23 Score=216.96 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=99.3
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
|+++|+++. +|..+. ++|+.|++++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 37 ~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 37 DYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp ECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 578999986 666554 89999999999999888889999999999999999999888999999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCcc-CCCCccccccccccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVG-PIPSGIFSLEKFNGL 120 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L 120 (461)
.+|.. .+++|++|++++|++.+ .+|..+..+.+|+.|
T Consensus 114 -~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 114 -NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp -EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred -ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 56655 89999999999999986 456778777766653
No 51
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.2e-22 Score=192.84 Aligned_cols=201 Identities=17% Similarity=0.202 Sum_probs=161.0
Q ss_pred CCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEE
Q 045177 18 ISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLF 97 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 97 (461)
+.++..+++..+.+.+.. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++ + ..+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEE
Confidence 345566778888777543 4678899999999999998 444 48899999999999999985 3 4789999999999
Q ss_pred ccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcc-cCCcc-ccEEEcccCcccccCCccccCCCcccEE
Q 045177 98 IQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNKK-MTNLILRNCNITGELPPYLGKMTTLKVL 175 (461)
Q Consensus 98 L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L 175 (461)
+++|.+.+..+..+..+.+|+. +.+.+. .+....+. +.... |++|+|++|.+++..+..+..+++|+.|
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~--------L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKE--------LVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCE--------EECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCccCccChhHhcCCcCCCE--------EECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 9999999776666777777766 555542 22222222 44444 9999999999997777778899999999
Q ss_pred eccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCC
Q 045177 176 DLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 176 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p 233 (461)
+|++|++++..+..+..+++|+.|+|++|++++..|..+ +++|+.|+|++|++.+..|
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 999999998777778999999999999999997766555 6788999999999987654
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=5.3e-23 Score=214.51 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|..|.++++|++|++++|++++..|+.|.++++|++|+|++|++++..|..|+++++|++|++++|+++
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 111 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence 35666666666666677777777777777776666666666677777777777766555555666666666666666665
Q ss_pred CC-CchhhccCCCCcEEEccCCC
Q 045177 81 GQ-IPSFIQNWTKLEKLFIQPSG 102 (461)
Q Consensus 81 ~~-~p~~~~~l~~L~~L~L~~n~ 102 (461)
+. .|..+.++++|++|++++|.
T Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 112 TLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp SSCSSCSCTTCTTCCEEEEEESS
T ss_pred ccchhhhhhccCCccEEECCCCc
Confidence 42 33445555555555555554
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=7.8e-24 Score=205.14 Aligned_cols=197 Identities=19% Similarity=0.237 Sum_probs=159.0
Q ss_pred CCCCCcCCCCCchhh--hcCCCCcEEeeccccCCCCCchhhcCC-----CCCCEEEccCCcCCCCchhhhhCCCCcCEEE
Q 045177 1 SLLANRLTGPIPKYL--ANISTLVNLTVQYNQFSGELPEELGSL-----LNLEKLHLSSNNFTGELPKTFAKLTNMKDFR 73 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 73 (461)
+|++|++++.+|..+ ..+++|+.|+|++|++++. |..+..+ ++|++|+|++|++++..|..|+.+++|++|+
T Consensus 101 ~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 179 (312)
T 1wwl_A 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179 (312)
T ss_dssp EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE
T ss_pred EccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE
Confidence 467899999999876 8999999999999999976 8888877 9999999999999988889999999999999
Q ss_pred eeCCcCCCC--Cchhh--ccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcccc
Q 045177 74 IGDNQFTGQ--IPSFI--QNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMT 149 (461)
Q Consensus 74 Ls~N~l~~~--~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~ 149 (461)
|++|++.+. .+..+ ..+++|++|++++|++.+ ++.....+ +. ...+|+
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~--~~-------------------------~l~~L~ 231 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSAL--AA-------------------------ARVQLQ 231 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHH--HH-------------------------TTCCCS
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHH--Hh-------------------------cCCCCC
Confidence 999998765 33444 889999999999999862 11100000 00 012378
Q ss_pred EEEcccCcccccCC-ccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccC
Q 045177 150 NLILRNCNITGELP-PYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYN 226 (461)
Q Consensus 150 ~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N 226 (461)
+|+|++|.+++..| ..+..+++|+.|+|++|+|+ .+|..+. ++|++|+|++|+|++. |. + +++|+.|+|++|
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTC
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCC
Confidence 89999999997664 45667889999999999998 7777766 7899999999999965 54 3 567789999999
Q ss_pred cccCC
Q 045177 227 NFTDG 231 (461)
Q Consensus 227 ~l~~~ 231 (461)
++++.
T Consensus 307 ~l~~~ 311 (312)
T 1wwl_A 307 PFLDS 311 (312)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 99863
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=6.8e-23 Score=194.80 Aligned_cols=213 Identities=16% Similarity=0.160 Sum_probs=165.6
Q ss_pred EEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCC
Q 045177 23 NLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSG 102 (461)
Q Consensus 23 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~ 102 (461)
.++..+..+. .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4566666776 5666553 589999999999997777789999999999999999998888899999999999999999
Q ss_pred CccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccccc-CCccccCCCcccEEeccCC
Q 045177 103 LVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNITGE-LPPYLGKMTTLKVLDLSFN 180 (461)
Q Consensus 103 l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N 180 (461)
+.+..+..+..+.+|+. +.+.+..........+.... |++|+|++|.+++. +|..+..+++|++|+|++|
T Consensus 88 l~~~~~~~~~~l~~L~~--------L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQK--------LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CCEECTTTTTTCTTCCE--------EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCccChhhhcCCccccE--------EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 99777777777777776 44444221111111244444 99999999999863 6889999999999999999
Q ss_pred cccCCCCccccCCCCCC----EEEccCCcCCCCCCccc-cccCCccccccCcccCCCCcccccccccceee
Q 045177 181 KLSGHIPSNFDDLYEVD----YIYFTGNLLTGAIPPWM-LEKGDKIDLSYNNFTDGSAESSCQKRSVNLFA 246 (461)
Q Consensus 181 ~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~p~~~-~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~ 246 (461)
++++..+..+..+++|+ .|++++|.+++..+..+ ..+++.|+|++|++++..+..+..+..|..+.
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 99977777787777777 89999999996555444 33688999999999987665555555555443
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.2e-22 Score=192.79 Aligned_cols=178 Identities=19% Similarity=0.164 Sum_probs=107.1
Q ss_pred hhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCc
Q 045177 15 LANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLE 94 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 94 (461)
+.++++|+.++++++.++ .+|..+. ++|+.|+|++|.+++..+..|..+++|++|+|++|.+++. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 567788888888888888 5555443 5788888888888877777888888888888888888743 322 6788888
Q ss_pred EEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccE
Q 045177 95 KLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKV 174 (461)
Q Consensus 95 ~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 174 (461)
+|++++|++. .+|..+..+.+ |++|+|++|++++..+..|..+++|+.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~-------------------------------L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPA-------------------------------LTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTT-------------------------------CCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred EEECCCCcCC-cCchhhccCCC-------------------------------CCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 8888888876 45554433333 344444445444433344444445555
Q ss_pred EeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCccc
Q 045177 175 LDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFT 229 (461)
Q Consensus 175 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~ 229 (461)
|+|++|+|++..+..|..+++|+.|+|++|+|+...+..+ +++|+.|+|++|+++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 5555555544334444444445555555555442222222 234444555555444
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.7e-22 Score=189.17 Aligned_cols=180 Identities=23% Similarity=0.247 Sum_probs=156.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|+...+..|.++++|++|+|++|.++...+..|.++++|++|+|++|+++...+..|..+++|++|+|++|+++
T Consensus 43 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp ECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred ECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC
Confidence 47899999888889999999999999999999666667799999999999999999777778899999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
...+..|..+++|++|++++|.+.+..+..+..+ .+|++|+|++|.+++
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------------------------------~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-------------------------------TSLKELRLYNNQLKR 171 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------------------------------TTCCEEECCSSCCSC
T ss_pred eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-------------------------------cccceeEecCCcCcE
Confidence 8888889999999999999999874333222222 237889999999997
Q ss_pred cCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCC
Q 045177 161 ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211 (461)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 211 (461)
..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+....+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 777789999999999999999997777778999999999999999985543
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-23 Score=203.56 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=46.6
Q ss_pred CcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCc
Q 045177 5 NRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIP 84 (461)
Q Consensus 5 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 84 (461)
+++...++..+..+++|+.|+|++|++++..|..|.++++|++|+|++|.+++..+ +..+++|++|+|++|++++..
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~- 96 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL- 96 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-
Confidence 33333333334444555555555555555445555555555555555555553332 555555555555555554211
Q ss_pred hhhccCCCCcEEEccCCCCc
Q 045177 85 SFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 85 ~~~~~l~~L~~L~L~~n~l~ 104 (461)
..++|++|++++|.+.
T Consensus 97 ----~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 97 ----VGPSIETLHAANNNIS 112 (317)
T ss_dssp ----ECTTCCEEECCSSCCS
T ss_pred ----CCCCcCEEECCCCccC
Confidence 2245555555555544
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=7e-23 Score=216.27 Aligned_cols=220 Identities=14% Similarity=0.125 Sum_probs=100.6
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
+++|.+.. +| .+..+++|+.|++++|.+. .+| .+ .+++|++|++++|...+.. .+..+++|++|++++|++++
T Consensus 292 l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccchh-hh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 34555543 33 5666666777777766663 555 33 5555555555555433222 34455555555555555543
Q ss_pred C--CchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc--ccCCcc-ccEEEcccC
Q 045177 82 Q--IPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP--QLGNKK-MTNLILRNC 156 (461)
Q Consensus 82 ~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~--~l~~~~-L~~L~L~~n 156 (461)
. .+..+..+++|++|++++|.+.+ +|..+..+.+|+. +.+.+. ......+ .+...+ |++|++++|
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~--------L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH--------LDFQHS-TLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE--------EECTTS-EEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe--------eECCCC-ccCCccChhhhhccccCCEEECcCC
Confidence 3 24455555555555555555442 3333333333333 222221 0000111 122222 444444444
Q ss_pred cccccCCccccCCCcccEEeccCCcccC-CCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCC
Q 045177 157 NITGELPPYLGKMTTLKVLDLSFNKLSG-HIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p 233 (461)
.+++..|..+..+++|+.|++++|++++ .+|..+..+++|+.|+|++|++++..|..+ +++|+.|+|++|++++..|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 4444444444444444444444444443 234444444444444444444444434333 3344444444444444444
Q ss_pred ccccc
Q 045177 234 ESSCQ 238 (461)
Q Consensus 234 ~~~c~ 238 (461)
..++.
T Consensus 515 ~~~~~ 519 (606)
T 3vq2_A 515 SHYNQ 519 (606)
T ss_dssp GGTTT
T ss_pred HHccC
Confidence 44433
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=4.4e-22 Score=210.58 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=99.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
||++|+|+++.|.+|.++++|++|+|++|+|++..++.|.++++|++|+|++|++++..+..|+++++|++|+|++|+++
T Consensus 82 ~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 82 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 58999999999999999999999999999999777788999999999999999999777778999999999999999997
Q ss_pred C-CCchhhccCCCCcEEEccCCCCccCCCCc
Q 045177 81 G-QIPSFIQNWTKLEKLFIQPSGLVGPIPSG 110 (461)
Q Consensus 81 ~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 110 (461)
. ..|..+..+++|++|++++|++.+..+..
T Consensus 162 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred cCCCchhhccchhhhhhcccCcccccccccc
Confidence 5 46788999999999999999987654443
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=7.2e-23 Score=213.52 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=97.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCC-chhhhhCCCCcCEEEeeCCcC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGE-LPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l 79 (461)
+|++|+|++..|.+|.++++|++|++++|++++..|..|+++++|++|+|++|.+++. .|..+.++++|++|++++|++
T Consensus 56 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 56 ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred ECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcc
Confidence 4788889888888899999999999999999877777788999999999999988853 466788899999999998884
Q ss_pred CCCC-chhhccCCCCcEEEccCCCCccCCCCcccccccccc
Q 045177 80 TGQI-PSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNG 119 (461)
Q Consensus 80 ~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 119 (461)
.+.+ +..|.++++|++|++++|.+.+..|..+..+++|+.
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 4344 467888999999999999988888887776665543
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.5e-23 Score=212.81 Aligned_cols=205 Identities=21% Similarity=0.161 Sum_probs=93.6
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|+|++..|..|..+++|+.|+|++|.+++..| |..+++|++|+|++|.+++. | ..++|++|++++|.+++
T Consensus 41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~ 113 (487)
T 3oja_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISR 113 (487)
T ss_dssp CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCC
T ss_pred eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCC
Confidence 44555555444555555555555555555543333 44555555555555555421 1 12455555555555553
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccC-C-ccccEEEcccCcc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLG-N-KKMTNLILRNCNI 158 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~-~-~~L~~L~L~~n~l 158 (461)
..+. .+++|+.|++++|.+.+..|..+..+.+|+. +.+++ +.+....+ .+. . .+|+.|+|++|.+
T Consensus 114 ~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~--------L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 114 VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY--------LDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE--------EECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE--------EECCC-CCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 3322 2345555555555555444444444444333 33332 11111111 121 1 2255555555555
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCccc
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFT 229 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~ 229 (461)
++. +. +..+++|+.|+|++|+|++ +|..+..+++|+.|+|++|.|++ +|..+ ++.++.|+|++|+++
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 533 11 2235555555555555553 22235555555555555555552 33333 334555555555554
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.1e-22 Score=189.15 Aligned_cols=188 Identities=16% Similarity=0.151 Sum_probs=131.3
Q ss_pred CCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCc-CCCCchhhhhCCCCcCEEEeeC-CcCCCCCchhh
Q 045177 10 PIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN-FTGELPKTFAKLTNMKDFRIGD-NQFTGQIPSFI 87 (461)
Q Consensus 10 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~ 87 (461)
.+|. +. ++|+.|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |+++...+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 3555 33 489999999999997777789999999999999997 8866666899999999999998 99997777889
Q ss_pred ccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccC-cccccCCccc
Q 045177 88 QNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNC-NITGELPPYL 166 (461)
Q Consensus 88 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~ 166 (461)
.++++|++|++++|.+.+ +|. +..+.+|+. |++|++++| .+++..+..|
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~----------------------------L~~L~l~~N~~l~~i~~~~~ 151 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI----------------------------FFILEITDNPYMTSIPVNAF 151 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS----------------------------EEEEEEESCTTCCEECTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-ccccccccc----------------------------ccEEECCCCcchhhcCcccc
Confidence 999999999999999875 554 443333321 335666666 6665444556
Q ss_pred cCCCccc-EEeccCCcccCCCCccccCCCCCCEEEccCCc-CCCCCCccc--c-ccCCccccccCcccCC
Q 045177 167 GKMTTLK-VLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNL-LTGAIPPWM--L-EKGDKIDLSYNNFTDG 231 (461)
Q Consensus 167 ~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~--~-~~l~~LdLs~N~l~~~ 231 (461)
..+++|+ .|++++|+++ .+|......++|+.|+|++|+ ++...+..+ + +.++.|+|++|++++.
T Consensus 152 ~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence 6666666 6666666666 333322222566666666663 653333333 2 4566666666666653
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=1.1e-22 Score=189.16 Aligned_cols=191 Identities=17% Similarity=0.136 Sum_probs=157.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeecccc-CCCCCchhhcCCCCCCEEEccC-CcCCCCchhhhhCCCCcCEEEeeCCc
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQ-FSGELPEELGSLLNLEKLHLSS-NNFTGELPKTFAKLTNMKDFRIGDNQ 78 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~ 78 (461)
+|++|+|+++.+..|.++++|+.|++++|+ ++...+..|.++++|++|+|++ |+++...+..|.++++|++|++++|+
T Consensus 37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~ 116 (239)
T 2xwt_C 37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116 (239)
T ss_dssp EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC
T ss_pred EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC
Confidence 467899998888899999999999999997 8867677899999999999999 99997667789999999999999999
Q ss_pred CCCCCchhhccCCCCc---EEEccCC-CCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcccc-EEEc
Q 045177 79 FTGQIPSFIQNWTKLE---KLFIQPS-GLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMT-NLIL 153 (461)
Q Consensus 79 l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~-~L~L 153 (461)
+++ +|. +..+++|+ +|++++| .+....+..+..+. +|+ +|+|
T Consensus 117 l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-------------------------------~L~~~L~l 163 (239)
T 2xwt_C 117 LKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-------------------------------NETLTLKL 163 (239)
T ss_dssp CCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-------------------------------SSEEEEEC
T ss_pred Ccc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-------------------------------cceeEEEc
Confidence 995 665 88889998 9999999 77643333333222 267 7999
Q ss_pred ccCcccccCCccccCCCcccEEeccCCc-ccCCCCccccCC-CCCCEEEccCCcCCCCCCccccccCCccccccC
Q 045177 154 RNCNITGELPPYLGKMTTLKVLDLSFNK-LSGHIPSNFDDL-YEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYN 226 (461)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N 226 (461)
++|+++...+..+.. ++|+.|+|++|+ +++..+..|..+ ++|+.|+|++|+++ .+|...++.++.|+++++
T Consensus 164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC
T ss_pred CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCc
Confidence 999998433344444 899999999995 986667788888 99999999999999 566667788888988876
No 64
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.1e-21 Score=183.94 Aligned_cols=205 Identities=20% Similarity=0.269 Sum_probs=161.1
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
++++++++ .+|..+. +.|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|+++
T Consensus 20 ~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 20 DCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp ECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 35677777 4555444 68999999999999888888999999999999999999888888999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
+..+..|..+++|++|+|++|.+.+..+..+..+ .+|++|+|++|++++
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------------------------~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-------------------------------TKLKELRLNTNQLQS 145 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------------------------------TTCCEEECCSSCCCC
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-------------------------------CcccEEECcCCcCCc
Confidence 8888899999999999999999984433322222 237889999999997
Q ss_pred cCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCc------cccc-cCCccccccCcccCCCC
Q 045177 161 ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP------WMLE-KGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~------~~~~-~l~~LdLs~N~l~~~~p 233 (461)
..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+. |+.. ..+..+..++.+.+..+
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPD 225 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGG
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCC
Confidence 7777899999999999999999987788899999999999999999976332 2221 22345566666666544
Q ss_pred cccccc
Q 045177 234 ESSCQK 239 (461)
Q Consensus 234 ~~~c~~ 239 (461)
...|..
T Consensus 226 ~~~C~~ 231 (251)
T 3m19_A 226 GVTCSD 231 (251)
T ss_dssp GCBBTT
T ss_pred cCccCC
Confidence 445544
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=6.6e-22 Score=207.05 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=87.0
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
||++|+|++..+.+|.++++|+.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|+++
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 113 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc
Confidence 46777887777777888888888888888887666677777888888888888877666667777777777777777777
Q ss_pred CCCchhhccCCCCcEEEccCCCCcc-CCCCcccccccccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVG-PIPSGIFSLEKFNG 119 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~ 119 (461)
...+..++++++|++|++++|.+.+ .+|..+..+++|+.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred cCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 5544467777777777777777765 35666666655555
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.2e-21 Score=187.79 Aligned_cols=192 Identities=20% Similarity=0.166 Sum_probs=162.5
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
++++|+++. +|..+. ++|+.|+|++|.+++..+..|.++++|++|+|++|.+++ ++. ...+++|++|+|++|+++
T Consensus 16 ~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~Ls~N~l~ 90 (290)
T 1p9a_G 16 NCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQLQ 90 (290)
T ss_dssp ECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSSCCS
T ss_pred ECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEECCCCcCC
Confidence 367788875 554443 789999999999998888899999999999999999994 444 378999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
.+|..+..+++|++|++++|++++..+..+..+. +|++|+|++|++++
T Consensus 91 -~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-------------------------------~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-------------------------------ELQELYLKGNELKT 138 (290)
T ss_dssp -SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-------------------------------TCCEEECTTSCCCC
T ss_pred -cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-------------------------------CCCEEECCCCCCCc
Confidence 7788899999999999999999854444443322 37779999999998
Q ss_pred cCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccC
Q 045177 161 ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~ 230 (461)
..+..|..+++|+.|+|++|+|+...+..|..+++|+.|+|++|+|+ .+|..+ ...++.|+|++|++..
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77778899999999999999999766677889999999999999999 777776 3468899999999864
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.6e-22 Score=208.26 Aligned_cols=226 Identities=15% Similarity=0.179 Sum_probs=165.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
||++|+|++..|.+|+++++|++|+|++|.+++..|..|.++++|++|++++|++++..+..++++++|++|++++|.++
T Consensus 58 ~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 137 (570)
T 2z63_A 58 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (570)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccc
Confidence 47788888888888888888888888888888777778888888888888888888555556888888888888888887
Q ss_pred C-CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCccccEEEcccC--
Q 045177 81 G-QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKKMTNLILRNC-- 156 (461)
Q Consensus 81 ~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~L~~L~L~~n-- 156 (461)
+ .+|..|.++++|++|++++|.+.+..|..+..+.+|..+. .. +.+.. +......+ .+...+|++|++++|
T Consensus 138 ~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~--~~--L~l~~-n~l~~~~~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN--LS--LDLSL-NPMNFIQPGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp CCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC--CE--EECTT-CCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred eecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh--hh--cccCC-CCceecCHHHhccCcceeEecccccc
Confidence 6 3688888888888888888888876666666666652210 11 33333 11111111 133334777766665
Q ss_pred --------------------------------------------------------cccccCCccccCCCcccEEeccCC
Q 045177 157 --------------------------------------------------------NITGELPPYLGKMTTLKVLDLSFN 180 (461)
Q Consensus 157 --------------------------------------------------------~l~~~~~~~~~~l~~L~~L~Ls~N 180 (461)
.+.+..+..+..+++|+.|++++|
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 334445666777788888888888
Q ss_pred cccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCCc
Q 045177 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAE 234 (461)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~ 234 (461)
+++ .+|..+..+ +|++|++++|.+. .+|...++.++.|++++|.+.+..+.
T Consensus 293 ~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 293 TIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp EEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred cch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc
Confidence 888 577777777 8888888888888 67776777888888888888776665
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=4.3e-21 Score=195.56 Aligned_cols=204 Identities=18% Similarity=0.155 Sum_probs=146.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++. | .+..+++|++|++++|++++. | ++.+++|++|++++|.+++. + ++++++|++|++++|+++
T Consensus 48 ~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 48 DCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp ECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS
T ss_pred EccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC
Confidence 4678888875 4 688888888888888888854 3 78888888888888888854 3 788888888888888888
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCC-ccccEEEcccCccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGN-KKMTNLILRNCNIT 159 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~-~~L~~L~L~~n~l~ 159 (461)
+ ++ +..+++|++|++++|++++. + +..+.+|+. +.+..... ...+ .+.. .+|++|++++|+++
T Consensus 120 ~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~--------L~l~~n~~-~~~~-~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 120 K-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTE--------LDCHLNKK-ITKL-DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp C-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCE--------EECTTCSC-CCCC-CCTTCTTCCEEECCSSCCC
T ss_pred e-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCE--------EECCCCCc-cccc-ccccCCcCCEEECCCCccc
Confidence 5 33 78888888888888888753 2 444444444 33333211 1112 2223 33888888888888
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCCcc
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAES 235 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~~ 235 (461)
+ +| +..+++|+.|++++|++++. .+..+++|++|+|++|++++ +|..-+++|+.|++++|++++..+..
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCCCTT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcCHHH
Confidence 5 44 67788888888888888853 36778888888888888885 56444677788888888888754433
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1.8e-22 Score=195.99 Aligned_cols=219 Identities=21% Similarity=0.179 Sum_probs=171.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++..|..|.++++|+.|+|++|.+++..+ +..+++|++|+|++|.+++ ++ ..++|++|++++|+++
T Consensus 40 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~~n~l~ 112 (317)
T 3o53_A 40 DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAANNNIS 112 (317)
T ss_dssp ECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECCSSCCS
T ss_pred ECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECCCCccC
Confidence 588999999999999999999999999999986554 8999999999999999984 33 3489999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCC-Cccc-CC-ccccEEEcccCc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEAT-FPQL-GN-KKMTNLILRNCN 157 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~-~~~l-~~-~~L~~L~L~~n~ 157 (461)
+..+. .+++|++|++++|++.+..+..+..+.+|+. +.+++. .+... ...+ .. .+|++|+|++|.
T Consensus 113 ~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~--------L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 113 RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY--------LDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEE--------EECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCE--------EECCCC-CCCcccHHHHhhccCcCCEEECCCCc
Confidence 65544 3688999999999999776767777666666 555552 22222 2223 22 349999999999
Q ss_pred ccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCccc-CCCCc
Q 045177 158 ITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFT-DGSAE 234 (461)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~-~~~p~ 234 (461)
+++. +. ...+++|+.|+|++|++++ +|..+..+++|+.|+|++|+|+ .+|..+ +++++.|+|++|+++ +.+|.
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred Cccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 9855 33 3458999999999999994 5556889999999999999999 567665 568899999999998 55555
Q ss_pred cccccccc
Q 045177 235 SSCQKRSV 242 (461)
Q Consensus 235 ~~c~~~~l 242 (461)
.+.....+
T Consensus 257 ~~~~~~~L 264 (317)
T 3o53_A 257 FFSKNQRV 264 (317)
T ss_dssp HHHTCHHH
T ss_pred HHhccccc
Confidence 55444333
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=7e-22 Score=191.14 Aligned_cols=180 Identities=18% Similarity=0.176 Sum_probs=104.9
Q ss_pred CCCCcEEeeccccCCCCCchhh--cCCCCCCEEEccCCcCCCCch----hhhhCCCCcCEEEeeCCcCCCCCchhhccCC
Q 045177 18 ISTLVNLTVQYNQFSGELPEEL--GSLLNLEKLHLSSNNFTGELP----KTFAKLTNMKDFRIGDNQFTGQIPSFIQNWT 91 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 91 (461)
+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..+..|..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4567777777777777777666 777777888888777775433 3445677778888887777766677777777
Q ss_pred CCcEEEccCCCCccC--C--CCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCc---
Q 045177 92 KLEKLFIQPSGLVGP--I--PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPP--- 164 (461)
Q Consensus 92 ~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~--- 164 (461)
+|++|++++|++.+. + +..+..+++ |++|+|++|+++ .++.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-------------------------------L~~L~Ls~N~l~-~l~~~~~ 217 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPA-------------------------------IQNLALRNTGME-TPTGVCA 217 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCC-------------------------------CCSCBCCSSCCC-CHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCC-------------------------------CCEEECCCCCCC-chHHHHH
Confidence 788888877776431 1 111122222 444555555554 1111
Q ss_pred -cccCCCcccEEeccCCcccCCCCccccCC---CCCCEEEccCCcCCCCCCccccccCCccccccCcccC
Q 045177 165 -YLGKMTTLKVLDLSFNKLSGHIPSNFDDL---YEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230 (461)
Q Consensus 165 -~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~ 230 (461)
.+..+++|++|+|++|+|++..|..+..+ ++|++|+|++|+|+ .+|..+.++|+.|||++|++++
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCS
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCC
Confidence 12344555555555555554444444433 35555555555555 4444444455555555555554
No 71
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=7.5e-21 Score=186.62 Aligned_cols=225 Identities=23% Similarity=0.341 Sum_probs=131.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+++...+ +..+++|++|++++|.++. ++ .+.++++|++|++++|.+++. +. +..+++|++|++++|...
T Consensus 72 ~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~ 145 (347)
T 4fmz_A 72 NLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNL 145 (347)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTC
T ss_pred EccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCc
Confidence 467888886544 8889999999999998884 44 588899999999999998844 43 788888888888888665
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCccccccccccc----------------ccceeeeecccCCCCCCCCCcccC
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGL----------------VCMVFLFLRISDLNGPEATFPQLG 144 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L----------------~~l~~~~l~~~~l~~~~~~~~~l~ 144 (461)
..++ .+..+++|++|++++|.+....+ +..+++|+.| ..++.+.+.-+.+.. .+.+.
T Consensus 146 ~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~ 218 (347)
T 4fmz_A 146 SDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD----ITPVA 218 (347)
T ss_dssp CCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC----CGGGG
T ss_pred cccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC----Cchhh
Confidence 4443 47778888888888877763322 3333333331 111111111111110 01122
Q ss_pred Ccc-ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCc-cccccCCccc
Q 045177 145 NKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP-WMLEKGDKID 222 (461)
Q Consensus 145 ~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~~l~~Ld 222 (461)
... |++|++++|.+++..+ +..+++|++|++++|++++ + ..+..+++|++|++++|++++. +. .-+++|+.|+
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLF 293 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEE
T ss_pred cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEE
Confidence 222 5566666665553222 5555666666666666553 2 3455556666666666666533 21 1144555666
Q ss_pred cccCcccCCCCcccccccccc
Q 045177 223 LSYNNFTDGSAESSCQKRSVN 243 (461)
Q Consensus 223 Ls~N~l~~~~p~~~c~~~~l~ 243 (461)
|++|++++..|..++.+..|.
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCS
T ss_pred CcCCcCCCcChhHhhccccCC
Confidence 666666555554444443333
No 72
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=4e-21 Score=188.53 Aligned_cols=210 Identities=21% Similarity=0.300 Sum_probs=165.6
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|++.+..+ +..+++|+.|++++|.....++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 478899987544 8899999999999997664554 48999999999999999995444 889999999999999998
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNIT 159 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~ 159 (461)
+. +. +..+++|+.|++++|.+.+..+ +..+.+|+. +.+++. .... ++.+.... |++|++++|.++
T Consensus 191 ~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~--------L~l~~n-~l~~-~~~~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 191 DI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS--------LKIGNN-KITD-LSPLANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp CC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE--------EECCSS-CCCC-CGGGTTCTTCCEEECCSSCCC
T ss_pred cc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCE--------EEccCC-ccCC-CcchhcCCCCCEEECCCCccC
Confidence 54 33 8899999999999999875433 444555544 444442 1211 22244444 999999999998
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCC
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p 233 (461)
+. ..+..+++|+.|++++|++++. ..+..+++|+.|+|++|++++..|..+ +++|+.|+|++|++++..|
T Consensus 257 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 257 DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 53 4688999999999999999853 468889999999999999997777666 6788999999999998766
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5e-21 Score=184.99 Aligned_cols=205 Identities=17% Similarity=0.282 Sum_probs=153.7
Q ss_pred CCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCC
Q 045177 3 LANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQ 82 (461)
Q Consensus 3 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 82 (461)
..+.+...++ +..+++|+.|++++|.++ .++ .+..+++|++|+|++|.+++..+ +..+++|++|+|++|++++
T Consensus 27 ~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 27 GKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp TCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-
T ss_pred CCCCcCceec--HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-
Confidence 3445554333 567889999999999998 455 58899999999999999995444 8999999999999999985
Q ss_pred CchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccccc
Q 045177 83 IPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNITGE 161 (461)
Q Consensus 83 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~~~ 161 (461)
++ .+..+++|++|++++|.+.+ ++. +..+++|+. +.+.-+.+.. ++.+.... |++|+|++|.+++.
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~------L~l~~n~l~~----~~~l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQV------LYLDLNQITN----ISPLAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCE------EECCSSCCCC----CGGGGGCTTCCEEECCSSCCCCC
T ss_pred ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCE------EECCCCccCc----CccccCCCCccEEEccCCcCCCC
Confidence 33 68899999999999999875 332 444444444 2233332222 22244444 99999999999854
Q ss_pred CCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCC
Q 045177 162 LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~ 231 (461)
+. +..+++|+.|+|++|++++..+ +..+++|++|+|++|++++..+-.-+++|+.|+|++|++++.
T Consensus 167 -~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 167 -TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEECC
T ss_pred -hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeecC
Confidence 33 8889999999999999985433 788899999999999998665544467888999999999763
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=5.8e-21 Score=195.31 Aligned_cols=197 Identities=24% Similarity=0.343 Sum_probs=139.1
Q ss_pred hhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCc
Q 045177 15 LANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLE 94 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 94 (461)
+.++++|+.|++++|.+++. + .+..+++|++|++++|.+++..| ++.+++|++|++++|++++. ..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 78888888888888888743 3 47888888888888888886555 67788888888888888743 3577888888
Q ss_pred EEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCcccccCCccccCCCccc
Q 045177 95 KLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNITGELPPYLGKMTTLK 173 (461)
Q Consensus 95 ~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (461)
.|++++|.+.+..+ +..+.+|+. +.+++. .... ++.+.... |++|+|++|++++..+ +..+++|+
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~--------L~l~~n-~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTE--------LKLGAN-QISN-ISPLAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSE--------EECCSS-CCCC-CGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred EEECCCCccccchh--hhcCCCCCE--------EECCCC-ccCc-cccccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 88888888875433 444444444 333331 1111 12233333 8888888888875433 67788888
Q ss_pred EEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCC
Q 045177 174 VLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 174 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p 233 (461)
.|+|++|++++..| +..+++|+.|++++|++++...-.-+++|+.|++++|++++..|
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 88888888886554 67788888888888888855222225677888888888887666
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=5.9e-22 Score=203.61 Aligned_cols=213 Identities=17% Similarity=0.154 Sum_probs=163.5
Q ss_pred CchhhhcCC----CCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchh
Q 045177 11 IPKYLANIS----TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSF 86 (461)
Q Consensus 11 ~p~~~~~l~----~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 86 (461)
+|..+..+. +|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL--- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---
Confidence 455555554 89999999999998888999999999999999999996665 999999999999999998433
Q ss_pred hccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCCcc-ccEEEcccCcccccCCc
Q 045177 87 IQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGNKK-MTNLILRNCNITGELPP 164 (461)
Q Consensus 87 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~~~-L~~L~L~~n~l~~~~~~ 164 (461)
..++|++|++++|.+.+..+.. +++|+. +.+++ +.+....+ .+.... |++|+|++|.+++.+|.
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~~---l~~L~~--------L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCSR---GQGKKN--------IYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEECC---CSSCEE--------EECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred --CCCCcCEEECcCCcCCCCCccc---cCCCCE--------EECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCcChH
Confidence 3489999999999998654433 233333 44444 22222222 244444 99999999999988888
Q ss_pred ccc-CCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccccc
Q 045177 165 YLG-KMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRS 241 (461)
Q Consensus 165 ~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~ 241 (461)
.+. .+++|+.|+|++|.|++. |. +..+++|+.|+|++|.|++..|. + +++|+.|+|++|++++ +|..+..+..
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred HHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 776 789999999999999965 32 34689999999999999965444 5 6788999999999997 5665555544
Q ss_pred cceee
Q 045177 242 VNLFA 246 (461)
Q Consensus 242 l~~~~ 246 (461)
+..+.
T Consensus 239 L~~L~ 243 (487)
T 3oja_A 239 LEHFD 243 (487)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 54443
No 76
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.8e-20 Score=191.61 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=58.2
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
++++++.. +| .+..+++|++|++++|.+++.. . +.++++|++|++++|.+++..+ +.++++|++|++++|++++
T Consensus 53 l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 53 ADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp CCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred cCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence 44555543 33 2566667777777777666433 2 6666677777777776664333 6666666666666666664
Q ss_pred CCchhhccCCCCcEEEccCCCCc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~ 104 (461)
. +. +..+++|++|++++|.+.
T Consensus 127 ~-~~-~~~l~~L~~L~l~~n~l~ 147 (466)
T 1o6v_A 127 I-DP-LKNLTNLNRLELSSNTIS 147 (466)
T ss_dssp C-GG-GTTCTTCSEEEEEEEEEC
T ss_pred C-hH-HcCCCCCCEEECCCCccC
Confidence 3 22 666666666666666655
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.5e-20 Score=170.96 Aligned_cols=180 Identities=18% Similarity=0.192 Sum_probs=144.5
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
-+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 356788888887 555433 45899999999999977777788999999999999999877677788899999999999
Q ss_pred CCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCC
Q 045177 101 SGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFN 180 (461)
Q Consensus 101 n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 180 (461)
|.+.+..+..+..+ .+|++|+|++|++++..+..+..+++|+.|+|++|
T Consensus 86 n~l~~~~~~~~~~l-------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 86 NQLQSLPNGVFDKL-------------------------------TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp SCCCCCCTTTTTTC-------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCHhHhcCc-------------------------------cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC
Confidence 98874333222222 23777999999999777777889999999999999
Q ss_pred cccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCCcccccc
Q 045177 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAESSCQK 239 (461)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~~~c~~ 239 (461)
++++..+..+..+++|+.|+|++|.+.+..| .++.|+++.|+++|.+|+.++.+
T Consensus 135 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-----~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-----GIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSCCBCCCTT-----TTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ccceeCHHHhccCCCccEEEecCCCeecCCC-----CHHHHHHHHHhCCceeeccCccc
Confidence 9997777778899999999999999886543 67899999999999999876543
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.1e-22 Score=194.65 Aligned_cols=225 Identities=11% Similarity=0.163 Sum_probs=117.3
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCC-CchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCC-cC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGE-LPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDN-QF 79 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l 79 (461)
|++|.+.+..+. +..+++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..++.+++|++|+|++| .+
T Consensus 77 l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l 155 (336)
T 2ast_B 77 CPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155 (336)
T ss_dssp CTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC
T ss_pred cCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC
Confidence 455555555444 33466666666666666543 5555666666666666666666555566666666666666666 45
Q ss_pred CCC-CchhhccCCCCcEEEccCC-CCccC-CCCcccccc-cccccccceeeeecccCCC-CCC-CCCcc-cCC-ccccEE
Q 045177 80 TGQ-IPSFIQNWTKLEKLFIQPS-GLVGP-IPSGIFSLE-KFNGLVCMVFLFLRISDLN-GPE-ATFPQ-LGN-KKMTNL 151 (461)
Q Consensus 80 ~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~~l~~~~l~~~~l~-~~~-~~~~~-l~~-~~L~~L 151 (461)
++. ++..+..+++|++|++++| .+++. ++..+..++ +|+. +.++.+. ... ..++. +.. .+|++|
T Consensus 156 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~--------L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ--------LNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp CHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE--------EECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred CHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE--------EEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 432 4445566666666666666 55432 233333333 3333 3333321 111 11111 111 236666
Q ss_pred EcccCc-ccccCCccccCCCcccEEeccCCc-ccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCccc
Q 045177 152 ILRNCN-ITGELPPYLGKMTTLKVLDLSFNK-LSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFT 229 (461)
Q Consensus 152 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~ 229 (461)
+|++|. +++..+..+..+++|+.|+|++|. ++......+..+++|+.|+|++| ++...-..+...++.|++++|+++
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCc
Confidence 666666 554555556666666666666663 22111224555666666666666 332222222334556666666666
Q ss_pred CCCCccc
Q 045177 230 DGSAESS 236 (461)
Q Consensus 230 ~~~p~~~ 236 (461)
+..|...
T Consensus 307 ~~~~~~~ 313 (336)
T 2ast_B 307 TIARPTI 313 (336)
T ss_dssp CTTCSSC
T ss_pred cccCCcc
Confidence 6655543
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=2.2e-20 Score=190.32 Aligned_cols=202 Identities=20% Similarity=0.170 Sum_probs=153.0
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|++. | ++.+++|++|++++|.+++. + +.++++|++|++++|++++ +| ++.+++|++|++++|+++
T Consensus 70 ~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 70 ICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp ECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCS
T ss_pred EccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccc
Confidence 5789999885 4 88999999999999999964 3 8899999999999999996 44 899999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNIT 159 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~ 159 (461)
+. .+..+++|++|++++|...+.+ .+..+++|+. +++.-+.+.. ++ +.... |+.|++++|.++
T Consensus 141 ~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~------L~ls~n~l~~----l~-l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 141 EI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT------LDCSFNKITE----LD-VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE------EECCSSCCCC----CC-CTTCTTCCEEECCSSCCS
T ss_pred ee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE------EECCCCccce----ec-cccCCCCCEEECcCCcCC
Confidence 64 3888999999999999765555 2444444444 2233333222 22 33333 889999999888
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccc----------cCCccccccCccc
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLE----------KGDKIDLSYNNFT 229 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~----------~l~~LdLs~N~l~ 229 (461)
+. .+..+++|+.|++++|++++ +| +..+++|+.|++++|++++..+..+ + +++.|++++|++.
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l-~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTL-SKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHC-CCCCEEeccCCCCCEEECCCCccC
Confidence 54 37788899999999999986 55 7788889999999999886543332 2 3456777777766
Q ss_pred CCCCc
Q 045177 230 DGSAE 234 (461)
Q Consensus 230 ~~~p~ 234 (461)
+.+|.
T Consensus 278 ~~~~~ 282 (457)
T 3bz5_A 278 IYFQA 282 (457)
T ss_dssp CEEEC
T ss_pred Ccccc
Confidence 66664
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=2.3e-22 Score=200.53 Aligned_cols=222 Identities=18% Similarity=0.191 Sum_probs=145.2
Q ss_pred CchhhhcCCCCcEEeeccccCCCCCc----hhhcCCCCCCEEEccCCcCC---CCchhhh-------hCCCCcCEEEeeC
Q 045177 11 IPKYLANISTLVNLTVQYNQFSGELP----EELGSLLNLEKLHLSSNNFT---GELPKTF-------AKLTNMKDFRIGD 76 (461)
Q Consensus 11 ~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~N~l~---~~~p~~~-------~~l~~L~~L~Ls~ 76 (461)
++..+..+++|+.|+|++|.++...+ ..+..+++|++|+|++|.+. +.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 55667778888888888888876533 34667888888888886443 3445444 6788888888888
Q ss_pred CcCCC----CCchhhccCCCCcEEEccCCCCccCCCCccccccccccc---------ccceeeeecccCCCCCCCCCc--
Q 045177 77 NQFTG----QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGL---------VCMVFLFLRISDLNGPEATFP-- 141 (461)
Q Consensus 77 N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L---------~~l~~~~l~~~~l~~~~~~~~-- 141 (461)
|.++. .++..+..+++|++|+|++|.+....+..+... +..+ +.++. +.++........++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~l~~~~~~~~~~~L~~--L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQELAVNKKAKNAPPLRS--IICGRNRLENGSMKEW 179 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHHHHHHHHHTCCCCCE--EECCSSCCTGGGHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHHHhhhhhcccCCCCcE--EECCCCCCCcHHHHHH
Confidence 88886 366677888888888888888764333333221 1111 22222 33333221112222
Q ss_pred --ccCCc-cccEEEcccCcccc-----cCCccccCCCcccEEeccCCccc----CCCCccccCCCCCCEEEccCCcCCCC
Q 045177 142 --QLGNK-KMTNLILRNCNITG-----ELPPYLGKMTTLKVLDLSFNKLS----GHIPSNFDDLYEVDYIYFTGNLLTGA 209 (461)
Q Consensus 142 --~l~~~-~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~ 209 (461)
.+... +|++|+|++|.++. ..+..+..+++|+.|+|++|+++ ..+|..+..+++|++|+|++|.|++.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 12223 48888888888773 23436777888888888888885 45677777888888888888888754
Q ss_pred ----CCccc----cccCCccccccCcccC----CCCccc
Q 045177 210 ----IPPWM----LEKGDKIDLSYNNFTD----GSAESS 236 (461)
Q Consensus 210 ----~p~~~----~~~l~~LdLs~N~l~~----~~p~~~ 236 (461)
++..+ .++|+.|+|++|++++ .+|..+
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 34443 5667888888888877 355544
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.4e-21 Score=193.19 Aligned_cols=223 Identities=15% Similarity=0.158 Sum_probs=157.2
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCc----hhhcCCC-CCCEEEccCCcCCCCchhhhhCC-----CCcC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELP----EELGSLL-NLEKLHLSSNNFTGELPKTFAKL-----TNMK 70 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~ 70 (461)
+|+.|++++.+|..+...++|+.|+|++|.+++..+ +.+..++ +|++|+|++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 378999999999988887889999999999997776 7888999 99999999999997777777765 9999
Q ss_pred EEEeeCCcCCCCCchhhcc----C-CCCcEEEccCCCCccCCCCccccc-----ccccccccceeeeecccCCCCCCC--
Q 045177 71 DFRIGDNQFTGQIPSFIQN----W-TKLEKLFIQPSGLVGPIPSGIFSL-----EKFNGLVCMVFLFLRISDLNGPEA-- 138 (461)
Q Consensus 71 ~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~~l~~~~l~~~~l~~~~~-- 138 (461)
+|+|++|++++..+..+.. + ++|++|++++|.+.+..+..+... .+|+. +.+++......
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~--------L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS--------LNLRGNDLGIKSS 155 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE--------EECTTSCGGGSCH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE--------EEccCCcCCHHHH
Confidence 9999999999777765444 4 899999999999986555444321 23333 33333111100
Q ss_pred -CCcc-c-CC-ccccEEEcccCcccccCCccc----cCC-CcccEEeccCCcccCC----CCccccC-CCCCCEEEccCC
Q 045177 139 -TFPQ-L-GN-KKMTNLILRNCNITGELPPYL----GKM-TTLKVLDLSFNKLSGH----IPSNFDD-LYEVDYIYFTGN 204 (461)
Q Consensus 139 -~~~~-l-~~-~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~Ls~N~l~~~----~p~~l~~-l~~L~~L~L~~N 204 (461)
.++. + .. .+|++|+|++|.+++..+..+ ..+ ++|+.|+|++|+|++. ++..+.. .++|++|+|++|
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 0110 1 11 248888888888876555433 334 4788888888888752 3444444 347888888888
Q ss_pred cCCCCCCccc------cccCCccccccCcccCC
Q 045177 205 LLTGAIPPWM------LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 205 ~l~~~~p~~~------~~~l~~LdLs~N~l~~~ 231 (461)
.|++..+..+ .+.|+.|+|++|.+.+.
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCcccc
Confidence 8875544222 35677888888876554
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.1e-20 Score=167.96 Aligned_cols=173 Identities=17% Similarity=0.158 Sum_probs=143.7
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
.+++.++. +|..+ .++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 14 c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 14 CYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 35566654 44333 4689999999999997777778999999999999999997777778999999999999999997
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE 161 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 161 (461)
..+..|..+++|++|++++|++.+..+..+..+ .+|++|+|++|.+++.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------------------------~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL-------------------------------TQLKDLRLYQNQLKSV 139 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------------------------------TTCCEEECCSSCCSCC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccC-------------------------------CcCCEEECCCCcccee
Confidence 777788999999999999999985433322222 2377899999999977
Q ss_pred CCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCcccc
Q 045177 162 LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWML 215 (461)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 215 (461)
.+..+..+++|+.|+|++|.+.+ .++.|+.|++..|+++|.+|.++.
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 77778999999999999998873 456899999999999999998763
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.4e-20 Score=180.04 Aligned_cols=219 Identities=17% Similarity=0.128 Sum_probs=161.9
Q ss_pred CCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCch-hhhhCCCCcCE-EEeeCCcCC
Q 045177 3 LANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKD-FRIGDNQFT 80 (461)
Q Consensus 3 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~ 80 (461)
++++++ .+|..+ .++++.|+|++|+|+...++.|.++++|++|+|++|++.+.+| .+|.++++|++ +.++.|+++
T Consensus 17 ~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 17 QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp ESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred cCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 456776 466655 3689999999999996656689999999999999999976665 47889999876 566789999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCc-ccCC-c-cccEEEcccCc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFP-QLGN-K-KMTNLILRNCN 157 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~-~l~~-~-~L~~L~L~~n~ 157 (461)
...|..|..+++|++|++++|++....+..+.....+.. +.+.+...+....+ .+.. . .++.|+|++|+
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~--------l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL--------LDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE--------EEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhh--------hhhccccccccccccchhhcchhhhhhcccccc
Confidence 888899999999999999999998554444433333322 33333222221111 1222 2 38899999999
Q ss_pred ccccCCccccCCCcccEEeccC-CcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCCCc
Q 045177 158 ITGELPPYLGKMTTLKVLDLSF-NKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGSAE 234 (461)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~p~ 234 (461)
|+. ++.......+|++|++++ |.++...+..|..+++|+.|+|++|+|+ .+|...+..++.|.+.++.-...+|.
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTTCTTCCCCCC
T ss_pred ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhccCCCcCcCCC
Confidence 994 555445667899999985 7777545567899999999999999999 77777788888887777654455664
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.3e-19 Score=184.45 Aligned_cols=213 Identities=24% Similarity=0.344 Sum_probs=115.3
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|++|++++ +| .|+++++|++|++++|++++ +|.. ..+|++|++++|++++ +| .+.++++|++|++++|++++
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 45666654 44 36666666666666666663 3332 2355555666555553 34 35555555555555555553
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccc--------------cceeeeecccCCCCCCCCCcccCCcc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLV--------------CMVFLFLRISDLNGPEATFPQLGNKK 147 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~--------------~l~~~~l~~~~l~~~~~~~~~l~~~~ 147 (461)
+|.. .++|++|++++|.+. .+|. +..+++|+.|. .++.+++.-+.+.. +|.. ..+
T Consensus 210 -l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~----l~~~-~~~ 278 (454)
T 1jl5_A 210 -LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD----LPEL-PQS 278 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC----CCCC-CTT
T ss_pred -CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc----cCcc-cCc
Confidence 2211 123444444444433 2331 22222222211 11111111111111 1111 122
Q ss_pred ccEEEcccCcccc--cCCccc-------------cCC-CcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCC
Q 045177 148 MTNLILRNCNITG--ELPPYL-------------GKM-TTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211 (461)
Q Consensus 148 L~~L~L~~n~l~~--~~~~~~-------------~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 211 (461)
|++|++++|.+++ .+|..+ ..+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|
T Consensus 279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp 353 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP 353 (454)
T ss_dssp CCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCC
T ss_pred CCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-ccc
Confidence 5556666665554 122111 122 578899999999885 6653 578999999999999 577
Q ss_pred ccccccCCccccccCcccC--CCCcccccc
Q 045177 212 PWMLEKGDKIDLSYNNFTD--GSAESSCQK 239 (461)
Q Consensus 212 ~~~~~~l~~LdLs~N~l~~--~~p~~~c~~ 239 (461)
. .+++++.|+|++|++++ .+|.++..+
T Consensus 354 ~-~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 354 E-LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp C-CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred c-hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 6 67889999999999998 677766444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=181.30 Aligned_cols=185 Identities=16% Similarity=0.112 Sum_probs=123.4
Q ss_pred CCcEEeeccccCCCCC-ch--hhcCCCCCCEEEccCCcCCCCchhhh--hCCCCcCEEEeeCCcCCCCCc----hhhccC
Q 045177 20 TLVNLTVQYNQFSGEL-PE--ELGSLLNLEKLHLSSNNFTGELPKTF--AKLTNMKDFRIGDNQFTGQIP----SFIQNW 90 (461)
Q Consensus 20 ~L~~L~Ls~n~l~~~~-p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l 90 (461)
.++.|.+.++.++... .. .+..+++|++|+|++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3555666655554211 00 12234557777777777666666655 666677777777777665433 333456
Q ss_pred CCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc--C--Cccc
Q 045177 91 TKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE--L--PPYL 166 (461)
Q Consensus 91 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~--~--~~~~ 166 (461)
++|++|++++|.+.+..|..+..+ .+|++|+|++|++.+. + +..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l-------------------------------~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAF-------------------------------PALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCC-------------------------------TTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred cCCCEEEeeCCCcchhhHHHhccC-------------------------------CCCCEEECCCCCCccchhhhHHHhh
Confidence 677777777776654443333222 2378899999998642 2 2334
Q ss_pred cCCCcccEEeccCCcccCCCCc----cccCCCCCCEEEccCCcCCCCCCccc--c---ccCCccccccCcccCCCCcccc
Q 045177 167 GKMTTLKVLDLSFNKLSGHIPS----NFDDLYEVDYIYFTGNLLTGAIPPWM--L---EKGDKIDLSYNNFTDGSAESSC 237 (461)
Q Consensus 167 ~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~--~---~~l~~LdLs~N~l~~~~p~~~c 237 (461)
..+++|++|+|++|+++ .++. .+..+++|++|+|++|+|++..|..+ + ++|++|+|++|+++ .+|..++
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~ 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence 78999999999999998 3333 35778999999999999998877655 2 58999999999999 4676654
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.4e-19 Score=174.83 Aligned_cols=189 Identities=20% Similarity=0.301 Sum_probs=148.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
++++|++.. +| .+..+++|+.|++++|.+++. +. +..+++|++|+|++|.+++ ++ .+..+++|++|+|++|+++
T Consensus 47 ~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 47 SAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQIT 120 (308)
T ss_dssp ECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCC
T ss_pred EeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCC
Confidence 467888876 44 689999999999999999954 44 9999999999999999995 44 6999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNIT 159 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~ 159 (461)
+. + .+..+++|++|++++|.+.+..+ +..+.+|+. +.+++. .+.. ++.+.... |++|+|++|.++
T Consensus 121 ~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~--------L~l~~n-~l~~-~~~l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 121 DV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQY--------LSIGNA-QVSD-LTPLANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE--------EECCSS-CCCC-CGGGTTCTTCCEEECCSSCCC
T ss_pred Cc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccE--------EEccCC-cCCC-ChhhcCCCCCCEEECCCCccC
Confidence 54 4 38999999999999999985332 444444444 333331 2221 22244444 999999999999
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 214 (461)
+..+ +..+++|+.|+|++|++++.. .+..+++|+.|+|++|+++ ..|..+
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~-~~~~~~ 236 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT-NQPVFY 236 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE-CCCEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee-cCCeee
Confidence 5443 789999999999999999544 3889999999999999998 455443
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=2.7e-20 Score=189.50 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=93.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCC-------------CEEEccCCcCCCCchhhh----
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNL-------------EKLHLSSNNFTGELPKTF---- 63 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~Ls~N~l~~~~p~~~---- 63 (461)
++++|++ +.+|..++++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++ +|...
T Consensus 17 ~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~~~~L~ 94 (454)
T 1jl5_A 17 LRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPHLE 94 (454)
T ss_dssp ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSCCTTCS
T ss_pred hcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCCcCCCC
Confidence 4678888 7899999999999999999999988888877776543 555555555553 22210
Q ss_pred -------------hCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecc
Q 045177 64 -------------AKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRI 130 (461)
Q Consensus 64 -------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~ 130 (461)
..+++|++|++++|++++ ++.. .++|++|++++|++.+ +| .+..+.+|+. +++.-
T Consensus 95 ~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~------L~l~~ 162 (454)
T 1jl5_A 95 SLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKI------IDVDN 162 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCE------EECCS
T ss_pred EEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCE------EECCC
Confidence 011334444444444432 1110 1466777777776664 55 3444444444 22222
Q ss_pred cCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCC
Q 045177 131 SDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAI 210 (461)
Q Consensus 131 ~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 210 (461)
+.+.. +|... .+|++|++++|.+++ +| .+..+++|+.|++++|++++ +|.. .++|++|++++|.++ .+
T Consensus 163 N~l~~----lp~~~-~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 163 NSLKK----LPDLP-PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SCCSC----CCCCC-TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SC
T ss_pred CcCcc----cCCCc-ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cc
Confidence 22211 22111 236666666666663 44 35566666666666666553 3321 124455555555544 33
Q ss_pred Cccc-cccCCccccccCcccC
Q 045177 211 PPWM-LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 211 p~~~-~~~l~~LdLs~N~l~~ 230 (461)
|... +++++.|++++|++++
T Consensus 231 p~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 231 PELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCSS
T ss_pred cccCCCCCCCEEECCCCcCCc
Confidence 3211 3344445555554443
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.3e-19 Score=190.48 Aligned_cols=217 Identities=24% Similarity=0.256 Sum_probs=121.4
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
+++|+|+ .+|..+. ++|+.|+|++|.|+ .+|. .+++|++|+|++|+|+ .+|. .+++|++|+|++|++++
T Consensus 47 ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 47 VGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC
T ss_pred ecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC
Confidence 5566665 4444443 56666666666666 3443 4556666666666665 3333 44555555555555553
Q ss_pred CCchhh-----------------ccCCCCcEEEccCCCCccCCCCcccccccc-----------cccccceeeeecccCC
Q 045177 82 QIPSFI-----------------QNWTKLEKLFIQPSGLVGPIPSGIFSLEKF-----------NGLVCMVFLFLRISDL 133 (461)
Q Consensus 82 ~~p~~~-----------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-----------~~L~~l~~~~l~~~~l 133 (461)
+|..+ ..+++|++|++++|.+.+ +|..+..+..| ..+..|+.+++.-+.+
T Consensus 116 -l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 116 -LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL 193 (622)
T ss_dssp -CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred -CCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCC
Confidence 22210 012555666666665552 33322222222 0002233333332222
Q ss_pred CCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCcc
Q 045177 134 NGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPW 213 (461)
Q Consensus 134 ~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 213 (461)
..+ +.. ..+|+.|++++|.++ .+|. .+++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|.
T Consensus 194 ~~l----~~~-~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~- 258 (622)
T 3g06_A 194 ASL----PTL-PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM- 258 (622)
T ss_dssp SCC----CCC-CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC-
T ss_pred CCC----CCc-cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc-
Confidence 221 111 123666666666666 3343 23678888999998884 55 45678999999999998 5666
Q ss_pred ccccCCccccccCcccCCCCcccccccccceeec
Q 045177 214 MLEKGDKIDLSYNNFTDGSAESSCQKRSVNLFAS 247 (461)
Q Consensus 214 ~~~~l~~LdLs~N~l~~~~p~~~c~~~~l~~~~~ 247 (461)
.+++|+.|+|++|+|+ .+|..+..+..|..+..
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 6678889999999998 56777776666655543
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=6.2e-19 Score=185.42 Aligned_cols=206 Identities=21% Similarity=0.218 Sum_probs=126.4
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEc
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFI 98 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 98 (461)
..++.|++++|.++ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999999 7777665 79999999999999 5665 6789999999999998 4555 6789999999
Q ss_pred cCCCCccCCCCccccccccc-----------ccccceeeeecccCCCCCCCCCcccCC---------------ccccEEE
Q 045177 99 QPSGLVGPIPSGIFSLEKFN-----------GLVCMVFLFLRISDLNGPEATFPQLGN---------------KKMTNLI 152 (461)
Q Consensus 99 ~~n~l~~~~p~~~~~l~~L~-----------~L~~l~~~~l~~~~l~~~~~~~~~l~~---------------~~L~~L~ 152 (461)
++|.+.+ +|..+.++..|. .++.|+.+++.-+.+..+...++.+.. .+|+.|+
T Consensus 109 s~N~l~~-l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~ 187 (622)
T 3g06_A 109 FSNPLTH-LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELS 187 (622)
T ss_dssp CSCCCCC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred cCCcCCC-CCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEE
Confidence 9999874 444332222220 012333333333332222111111100 1144444
Q ss_pred cccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCCC
Q 045177 153 LRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDGS 232 (461)
Q Consensus 153 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~~ 232 (461)
|++|.+++ +|. .+++|+.|++++|+++ .+|. .+++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+. +
T Consensus 188 Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp-~~l~~L~~L~Ls~N~L~~-l 256 (622)
T 3g06_A 188 VSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP-VLPSELKELMVSGNRLTS-L 256 (622)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCCSC-C
T ss_pred CCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC-CCCCcCcEEECCCCCCCc-C
Confidence 44444432 222 1234444444444444 2332 23678889999998884 56 445788999999999986 5
Q ss_pred Ccccccccccceeec
Q 045177 233 AESSCQKRSVNLFAS 247 (461)
Q Consensus 233 p~~~c~~~~l~~~~~ 247 (461)
|..+..+..|++..+
T Consensus 257 p~~~~~L~~L~Ls~N 271 (622)
T 3g06_A 257 PMLPSGLLSLSVYRN 271 (622)
T ss_dssp CCCCTTCCEEECCSS
T ss_pred CcccccCcEEeCCCC
Confidence 554445555555443
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.4e-19 Score=173.35 Aligned_cols=183 Identities=21% Similarity=0.350 Sum_probs=145.5
Q ss_pred CCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCC
Q 045177 3 LANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQ 82 (461)
Q Consensus 3 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 82 (461)
..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|++++..+ +..+++|++|++++|++++
T Consensus 32 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 104 (291)
T 1h6t_A 32 KKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD- 104 (291)
T ss_dssp TCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred cCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-
Confidence 445555433 35678999999999999984 44 48899999999999999996544 8999999999999999985
Q ss_pred CchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccC
Q 045177 83 IPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGEL 162 (461)
Q Consensus 83 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 162 (461)
++ .+..+++|++|++++|++.+. + .+..+ .+|++|+|++|.+++.
T Consensus 105 ~~-~l~~l~~L~~L~L~~n~i~~~-~-~l~~l-------------------------------~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 105 LS-SLKDLKKLKSLSLEHNGISDI-N-GLVHL-------------------------------PQLESLYLGNNKITDI- 149 (291)
T ss_dssp GG-GGTTCTTCCEEECTTSCCCCC-G-GGGGC-------------------------------TTCCEEECCSSCCCCC-
T ss_pred Ch-hhccCCCCCEEECCCCcCCCC-h-hhcCC-------------------------------CCCCEEEccCCcCCcc-
Confidence 33 489999999999999998742 1 11111 2378899999999854
Q ss_pred CccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCc-cccccCCccccccCcccCC
Q 045177 163 PPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP-WMLEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 163 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~~l~~LdLs~N~l~~~ 231 (461)
..+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.|++ ++. .-+++|+.|+|++|+++..
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECC
T ss_pred -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCC
Confidence 568899999999999999996544 8899999999999999985 443 2267888999999999873
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=2.1e-19 Score=188.62 Aligned_cols=183 Identities=21% Similarity=0.370 Sum_probs=121.1
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|..+.+...++ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++
T Consensus 28 l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 28 LKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp TTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 45566665544 5688999999999999984 44 58999999999999999996555 8999999999999999985
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE 161 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 161 (461)
++ .+..+++|+.|+|++|.+.+ + +.+..+.+ |+.|+|++|.+++.
T Consensus 102 -l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~-------------------------------L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 102 -LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-------------------------------LESLYLGNNKITDI 146 (605)
T ss_dssp -CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTT-------------------------------CSEEECCSSCCCCC
T ss_pred -Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCc-------------------------------cCEEECCCCccCCc
Confidence 33 78899999999999999874 2 22322222 44455555555532
Q ss_pred CCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCc-cccccCCccccccCcccC
Q 045177 162 LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP-WMLEKGDKIDLSYNNFTD 230 (461)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~~l~~LdLs~N~l~~ 230 (461)
..+..+++|+.|+|++|+|++..| +..+++|+.|+|++|+|++. |. .-+++|+.|+|++|++++
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 334555555555555555554333 45555555555555555532 21 113445555555555554
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=9.9e-20 Score=189.31 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=146.3
Q ss_pred hhhcCC-----CCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhc
Q 045177 14 YLANIS-----TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQ 88 (461)
Q Consensus 14 ~~~~l~-----~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 88 (461)
.+..++ +|+.|+|++|.+++ +|..+ .++|++|+|++|.|+ .+| ..+++|++|+|++|++++ +|. +.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~ 119 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP 119 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC
T ss_pred hhhhccccccCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh
Confidence 566665 89999999999985 66655 378999999999999 667 457899999999999996 666 65
Q ss_pred cCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccC
Q 045177 89 NWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGK 168 (461)
Q Consensus 89 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 168 (461)
. +|++|++++|.+++ +|. .+.+|+. +++.-+.+.. +|. ...+|++|+|++|.|++ +|. +.
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~------L~Ls~N~l~~----lp~-~l~~L~~L~Ls~N~L~~-lp~-l~- 179 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE---LPALLEY------INADNNQLTM----LPE-LPTSLEVLSVRNNQLTF-LPE-LP- 179 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC---CCTTCCE------EECCSSCCSC----CCC-CCTTCCEEECCSSCCSC-CCC-CC-
T ss_pred c--CCCEEECCCCcCCC-CCC---cCccccE------EeCCCCccCc----CCC-cCCCcCEEECCCCCCCC-cch-hh-
Confidence 4 99999999999986 665 3344444 2233333222 333 23459999999999995 666 65
Q ss_pred CCcccEEeccCCcccCCCCccccCCCCC-------CEEEccCCcCCCCCCccc--cccCCccccccCcccCCCCcccccc
Q 045177 169 MTTLKVLDLSFNKLSGHIPSNFDDLYEV-------DYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQK 239 (461)
Q Consensus 169 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~ 239 (461)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+ +++|+.|+|++|++++.+|..++.+
T Consensus 180 -~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 89999999999999 6776 554 77 99999999999 678766 5678899999999999888877665
Q ss_pred c
Q 045177 240 R 240 (461)
Q Consensus 240 ~ 240 (461)
.
T Consensus 254 ~ 254 (571)
T 3cvr_A 254 T 254 (571)
T ss_dssp H
T ss_pred h
Confidence 4
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.8e-21 Score=192.74 Aligned_cols=224 Identities=18% Similarity=0.193 Sum_probs=170.9
Q ss_pred CCCCCcCCCCCchh----hhcCCCCcEEeecccc---CCCCCchhh-------cCCCCCCEEEccCCcCCC----Cchhh
Q 045177 1 SLLANRLTGPIPKY----LANISTLVNLTVQYNQ---FSGELPEEL-------GSLLNLEKLHLSSNNFTG----ELPKT 62 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~n~---l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~----~~p~~ 62 (461)
+|++|+|+...+.. |..+++|+.|+|++|. +++.+|..+ ..+++|++|+|++|.++. .+|..
T Consensus 38 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 117 (386)
T 2ca6_A 38 VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117 (386)
T ss_dssp ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHH
Confidence 47889888775544 6689999999999964 445566555 789999999999999996 47888
Q ss_pred hhCCCCcCEEEeeCCcCCCCCchh----hccC---------CCCcEEEccCCCCc-cCCC---Cccccccccccccccee
Q 045177 63 FAKLTNMKDFRIGDNQFTGQIPSF----IQNW---------TKLEKLFIQPSGLV-GPIP---SGIFSLEKFNGLVCMVF 125 (461)
Q Consensus 63 ~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l---------~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~~L~~l~~ 125 (461)
+..+++|++|+|++|.++...+.. +..+ ++|++|++++|++. ..++ ..+..+++|+.
T Consensus 118 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~------ 191 (386)
T 2ca6_A 118 LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT------ 191 (386)
T ss_dssp HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE------
T ss_pred HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE------
Confidence 999999999999999997544444 4444 89999999999987 3333 22333344443
Q ss_pred eeecccCCCCCC-----CCCc-ccCCcc-ccEEEcccCccc----ccCCccccCCCcccEEeccCCcccCC----CCccc
Q 045177 126 LFLRISDLNGPE-----ATFP-QLGNKK-MTNLILRNCNIT----GELPPYLGKMTTLKVLDLSFNKLSGH----IPSNF 190 (461)
Q Consensus 126 ~~l~~~~l~~~~-----~~~~-~l~~~~-L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l 190 (461)
+.+..+ .+. ...+ .+...+ |++|+|++|.++ ..+|..+..+++|+.|+|++|+|++. ++..+
T Consensus 192 --L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 192 --VKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp --EECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred --EECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 444442 121 0222 343444 999999999996 56788889999999999999999865 56666
Q ss_pred c--CCCCCCEEEccCCcCCC----CCCccc---cccCCccccccCcccCCCC
Q 045177 191 D--DLYEVDYIYFTGNLLTG----AIPPWM---LEKGDKIDLSYNNFTDGSA 233 (461)
Q Consensus 191 ~--~l~~L~~L~L~~N~l~~----~~p~~~---~~~l~~LdLs~N~l~~~~p 233 (461)
. .+++|+.|+|++|.+++ .+|..+ +++|+.|+|++|++++..+
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 4 48999999999999996 477776 5789999999999998654
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.7e-20 Score=181.66 Aligned_cols=212 Identities=15% Similarity=0.180 Sum_probs=163.2
Q ss_pred CCCCCcCCCCCchhhhcC--CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCC-chhhhhCCCCcCEEEeeCC
Q 045177 1 SLLANRLTGPIPKYLANI--STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGE-LPKTFAKLTNMKDFRIGDN 77 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N 77 (461)
||++|++. +..+..+ +.++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|++|+|++|
T Consensus 53 ~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 53 DLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp ECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred ccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 35667665 6777877 9999999999999976665 66899999999999999865 8888999999999999999
Q ss_pred cCCCCCchhhccCCCCcEEEccCC-CCccC-CCCcccccccccccccceeeeecccCCCCCCCC-Ccc-c-CCc-cccEE
Q 045177 78 QFTGQIPSFIQNWTKLEKLFIQPS-GLVGP-IPSGIFSLEKFNGLVCMVFLFLRISDLNGPEAT-FPQ-L-GNK-KMTNL 151 (461)
Q Consensus 78 ~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~-~~~-l-~~~-~L~~L 151 (461)
.+++..+..+..+++|++|++++| .+++. ++..+..+++|+. +.++.+..+... ++. + ... +|++|
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~--------L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE--------LNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE--------EECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE--------EcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 999888889999999999999999 56642 4444555555555 555543122211 222 1 224 69999
Q ss_pred EcccC--ccc-ccCCccccCCCcccEEeccCCc-ccCCCCccccCCCCCCEEEccCCcCCCCCCc---cc--cccCCccc
Q 045177 152 ILRNC--NIT-GELPPYLGKMTTLKVLDLSFNK-LSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP---WM--LEKGDKID 222 (461)
Q Consensus 152 ~L~~n--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~---~~--~~~l~~Ld 222 (461)
+|++| .++ +.++..+..+++|+.|+|++|. +++..+..+..+++|++|+|++|. ...+. .+ +++|+.|+
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEE
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEe
Confidence 99999 455 3566677788999999999999 776777788899999999999996 23333 23 56788999
Q ss_pred cccC
Q 045177 223 LSYN 226 (461)
Q Consensus 223 Ls~N 226 (461)
|++|
T Consensus 279 l~~~ 282 (336)
T 2ast_B 279 VFGI 282 (336)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 9998
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=7.8e-19 Score=161.09 Aligned_cols=153 Identities=18% Similarity=0.222 Sum_probs=113.1
Q ss_pred cEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCC
Q 045177 22 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPS 101 (461)
Q Consensus 22 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 101 (461)
+.++++++.++ .+|..+. ++|+.|+|++|.|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888888 5665543 57888888888888666667888888888888888888777888888888888888888
Q ss_pred CCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCc
Q 045177 102 GLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNK 181 (461)
Q Consensus 102 ~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (461)
.+....+..+..+ .+|++|+|++|.+++..+..|..+++|+.|+|++|+
T Consensus 91 ~l~~l~~~~f~~l-------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 91 KITELPKSLFEGL-------------------------------FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCCCTTTTTTC-------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCC-------------------------------CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 8763222112111 226667777777776667777777778888888887
Q ss_pred ccCCCCccccCCCCCCEEEccCCcCCC
Q 045177 182 LSGHIPSNFDDLYEVDYIYFTGNLLTG 208 (461)
Q Consensus 182 l~~~~p~~l~~l~~L~~L~L~~N~l~~ 208 (461)
|++..+..|..+++|+.|+|++|.+..
T Consensus 140 l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 140 LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 776666667777777777777777663
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=161.43 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=117.8
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCch-hhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEcc
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELP-KTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQ 99 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 99 (461)
-+.+++++|.++ .+|..+. ..+++|+|++|.|++..+ ..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357888888888 5665443 356888899888885544 457888888888888888887777788888888888888
Q ss_pred CCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccC
Q 045177 100 PSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSF 179 (461)
Q Consensus 100 ~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 179 (461)
+|.+.+..+..+..+ .+|++|+|++|++++..|..|..+++|+.|+|++
T Consensus 90 ~N~l~~~~~~~~~~l-------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 90 SNRLENVQHKMFKGL-------------------------------ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp SSCCCCCCGGGGTTC-------------------------------SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCccCccCHhHhcCC-------------------------------cCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 888875444333322 1266688888888877777788888888888888
Q ss_pred CcccCCCCccccCCCCCCEEEccCCcCCCCCC
Q 045177 180 NKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211 (461)
Q Consensus 180 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 211 (461)
|+|++..|..|..+++|+.|+|++|.+++..+
T Consensus 139 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 139 NQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88887777788888888888888888775444
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=1.9e-20 Score=185.11 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=166.9
Q ss_pred CCCCCcCCCCCc----hhhhcCC-CCcEEeeccccCCCCCchhhcCC-----CCCCEEEccCCcCCCCchhhh----hCC
Q 045177 1 SLLANRLTGPIP----KYLANIS-TLVNLTVQYNQFSGELPEELGSL-----LNLEKLHLSSNNFTGELPKTF----AKL 66 (461)
Q Consensus 1 ~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~----~~l 66 (461)
||++|+|++..+ ..|.+++ +|+.|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+ ..+
T Consensus 28 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 107 (362)
T 3goz_A 28 DLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAI 107 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred EccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhC
Confidence 588999998888 7888998 99999999999998878777775 999999999999997766644 445
Q ss_pred -CCcCEEEeeCCcCCCCCchhhcc-----CCCCcEEEccCCCCccCCCCccc----ccc-cccccccceeeeecccCCCC
Q 045177 67 -TNMKDFRIGDNQFTGQIPSFIQN-----WTKLEKLFIQPSGLVGPIPSGIF----SLE-KFNGLVCMVFLFLRISDLNG 135 (461)
Q Consensus 67 -~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~~p~~~~----~l~-~L~~L~~l~~~~l~~~~l~~ 135 (461)
++|++|+|++|+++...+..+.. .++|++|+|++|.+....+..+. .+. +|+. +.++.+ .
T Consensus 108 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~--------L~Ls~n-~ 178 (362)
T 3goz_A 108 PFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS--------LNLRGN-N 178 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE--------EECTTS-C
T ss_pred CCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE--------eeecCC-C
Confidence 89999999999999777665543 36999999999999854433332 222 3333 444442 2
Q ss_pred CCCCCc-----ccCC--ccccEEEcccCccccc----CCccccC-CCcccEEeccCCcccCCCC----ccccCCCCCCEE
Q 045177 136 PEATFP-----QLGN--KKMTNLILRNCNITGE----LPPYLGK-MTTLKVLDLSFNKLSGHIP----SNFDDLYEVDYI 199 (461)
Q Consensus 136 ~~~~~~-----~l~~--~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L 199 (461)
+....+ .+.. .+|++|+|++|.+++. ++..+.. .++|++|+|++|+|++..+ ..+..+++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 211111 1122 3599999999999963 4445555 4599999999999996544 345678999999
Q ss_pred EccCCcCCCCCCccc---------cccCCccccccCcccCCCCccc
Q 045177 200 YFTGNLLTGAIPPWM---------LEKGDKIDLSYNNFTDGSAESS 236 (461)
Q Consensus 200 ~L~~N~l~~~~p~~~---------~~~l~~LdLs~N~l~~~~p~~~ 236 (461)
+|++|.+.+..+..+ .+.++.|||++|++....+...
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 999999774443322 3456799999999987655433
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.2e-18 Score=159.03 Aligned_cols=155 Identities=23% Similarity=0.285 Sum_probs=112.5
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
.+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+++...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 556888888887 5665443 7888888888888877788888888888888888888766666778888888888888
Q ss_pred CCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCC
Q 045177 101 SGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFN 180 (461)
Q Consensus 101 n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 180 (461)
|++++..+..+..+ .+|++|+|++|+++ .+|..+..+++|+.|+|++|
T Consensus 98 N~l~~l~~~~~~~l-------------------------------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 98 NQLTVLPSAVFDRL-------------------------------VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp SCCCCCCTTTTTTC-------------------------------TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS
T ss_pred CcCCccChhHhCcc-------------------------------hhhCeEeccCCccc-ccCcccccCCCCCEEECCCC
Confidence 88764333222221 22566777777777 66777777778888888888
Q ss_pred cccCCCCccccCCCCCCEEEccCCcCCCCC
Q 045177 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAI 210 (461)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 210 (461)
+|++..+..+..+++|+.|+|++|.+.+..
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 877655566777777777777777777543
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.3e-19 Score=177.32 Aligned_cols=176 Identities=19% Similarity=0.123 Sum_probs=139.2
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhh-CCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEcc
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFA-KLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQ 99 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 99 (461)
-+.++++++.++ .+|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999998 5676543 4689999999999977777777 89999999999999998878889999999999999
Q ss_pred CCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccC
Q 045177 100 PSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSF 179 (461)
Q Consensus 100 ~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 179 (461)
+|++....+..+..+ .+|++|+|++|.|++..+..|..+++|+.|+|++
T Consensus 97 ~N~l~~~~~~~~~~l-------------------------------~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 97 SNHLHTLDEFLFSDL-------------------------------QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp SSCCCEECTTTTTTC-------------------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcCCcCCHHHhCCC-------------------------------cCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 999875433333222 2377799999999988888999999999999999
Q ss_pred CcccCCCCccc---cCCCCCCEEEccCCcCCCCCCccc--ccc--CCccccccCcccC
Q 045177 180 NKLSGHIPSNF---DDLYEVDYIYFTGNLLTGAIPPWM--LEK--GDKIDLSYNNFTD 230 (461)
Q Consensus 180 N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~--~~~--l~~LdLs~N~l~~ 230 (461)
|+|++..+..| ..+++|+.|+|++|+|+...+..+ ++. ++.|+|++|++..
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 99996444445 568999999999999994433333 222 3689999999875
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=6.2e-19 Score=174.18 Aligned_cols=174 Identities=22% Similarity=0.239 Sum_probs=137.1
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhc-CCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELG-SLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+++|+|+. +|..+. +.++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|.++++|++|+|++|+++
T Consensus 25 c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 25 CSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp CCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence 56777775 555443 4588999999999977777777 8999999999999999777778999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
...+..|..+++|++|+|++|++....|..+..+. +|++|+|++|.|++
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-------------------------------~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-------------------------------QLQKLYLSQNQISR 150 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-------------------------------TCCEEECCSSCCCS
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-------------------------------cCCEEECCCCcCCe
Confidence 77777899999999999999998755454443322 26779999999985
Q ss_pred cCCccc---cCCCcccEEeccCCcccCCCCccccCCCC--CCEEEccCCcCCCC
Q 045177 161 ELPPYL---GKMTTLKVLDLSFNKLSGHIPSNFDDLYE--VDYIYFTGNLLTGA 209 (461)
Q Consensus 161 ~~~~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~L~~N~l~~~ 209 (461)
..+..| ..+++|+.|+|++|+|+...+..+..++. |+.|+|++|.+...
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 444444 56899999999999999655567777776 48899999998843
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.1e-18 Score=165.16 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=138.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
++++|++... + .+..+++|+.|++++|++++..+ +.++++|++|+|++|.+++ ++. +..+++|++|+|++|+++
T Consensus 52 ~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~n~i~ 125 (291)
T 1h6t_A 52 IANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSLEHNGIS 125 (291)
T ss_dssp ECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEECTTSCCC
T ss_pred EccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEECCCCcCC
Confidence 4678888765 3 48999999999999999996544 9999999999999999995 444 999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
+. ..+..+++|+.|++++|.+.+. ..+..+ .+|++|+|++|.+++
T Consensus 126 ~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-------------------------------~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 126 DI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-------------------------------TKLDTLSLEDNQISD 170 (291)
T ss_dssp CC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC-------------------------------TTCSEEECCSSCCCC
T ss_pred CC--hhhcCCCCCCEEEccCCcCCcc--hhhccC-------------------------------CCCCEEEccCCcccc
Confidence 54 5789999999999999998742 112111 237889999999996
Q ss_pred cCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCcc
Q 045177 161 ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPW 213 (461)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 213 (461)
..+ +..+++|+.|+|++|+|++ ++ .+..+++|+.|+|++|+++. .|..
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~-~~~~ 218 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN-KPIN 218 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC-CCEE
T ss_pred chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC-Cccc
Confidence 544 8899999999999999995 45 48999999999999999984 4443
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.8e-18 Score=158.74 Aligned_cols=148 Identities=17% Similarity=0.250 Sum_probs=128.0
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
+++|+++. +|..+. ++|+.|+|++|.|++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+++.
T Consensus 18 c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 18 CRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp CTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred cCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 56777774 555443 789999999999997777789999999999999999998889999999999999999999997
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE 161 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 161 (461)
..+..|..+++|++|+|++|++.+..|..+..+. +|++|+|++|.+++.
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------------------------------~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-------------------------------NLNLLSLYDNKLQTI 143 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------------TCCEEECCSSCCSCC
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-------------------------------CCCEEECCCCcCCEE
Confidence 7777789999999999999999866555444332 377799999999988
Q ss_pred CCccccCCCcccEEeccCCccc
Q 045177 162 LPPYLGKMTTLKVLDLSFNKLS 183 (461)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~ 183 (461)
.+..|..+++|+.|+|++|.+.
T Consensus 144 ~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 144 AKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCEE
T ss_pred CHHHHhCCCCCCEEEeCCCCcC
Confidence 7788999999999999999987
No 103
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=5.4e-21 Score=194.88 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=43.2
Q ss_pred ccEEEcccCccccc----CCccccCCCcccEEeccCCcccCCCCccccC-----CCCCCEEEccCCcCCC----CCCccc
Q 045177 148 MTNLILRNCNITGE----LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDD-----LYEVDYIYFTGNLLTG----AIPPWM 214 (461)
Q Consensus 148 L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~~ 214 (461)
|++|+|++|.+++. ++..+..+++|+.|+|++|++++..+..+.. .++|++|+|++|.+++ .+|..+
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 55666666655543 2334445556666666666655433332221 4456666666666553 334333
Q ss_pred --cccCCccccccCcccC
Q 045177 215 --LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 215 --~~~l~~LdLs~N~l~~ 230 (461)
.+.|++|+|++|++++
T Consensus 395 ~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHCCCCCEEECCSSSCCH
T ss_pred HhCCCccEEECCCCCCCH
Confidence 3455566666666554
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.2e-18 Score=156.95 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=44.5
Q ss_pred hcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcE
Q 045177 16 ANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEK 95 (461)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 95 (461)
+.+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44455555555555555 333 3555555555555555444 222 3555555555555555555444445555555555
Q ss_pred EEccCCCCc
Q 045177 96 LFIQPSGLV 104 (461)
Q Consensus 96 L~L~~n~l~ 104 (461)
|++++|.+.
T Consensus 117 L~Ls~n~i~ 125 (197)
T 4ezg_A 117 LDISHSAHD 125 (197)
T ss_dssp EECCSSBCB
T ss_pred EEecCCccC
Confidence 555555554
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=157.39 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=129.8
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCc-hhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELP-EELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 79 (461)
++++|+++. +|..+. +.++.|+|++|.|++..+ ..|..+++|++|+|++|+|++..+..|.++++|++|+|++|++
T Consensus 17 ~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 17 DCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp ECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 467888875 565543 457899999999997654 4589999999999999999977777999999999999999999
Q ss_pred CCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccc
Q 045177 80 TGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNIT 159 (461)
Q Consensus 80 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~ 159 (461)
++..+..|..+++|++|+|++|++.+..|..+..+. +|++|+|++|+++
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------~L~~L~L~~N~l~ 142 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-------------------------------SVRLLSLYDNQIT 142 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-------------------------------TCSEEECTTSCCC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-------------------------------cCCEEECCCCcCC
Confidence 988888999999999999999999876665554332 3777999999999
Q ss_pred ccCCccccCCCcccEEeccCCcccCC
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGH 185 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ 185 (461)
+..|..|..+++|+.|+|++|.++..
T Consensus 143 ~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 143 TVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred EECHHHhcCCCCCCEEEecCcCCcCC
Confidence 88899999999999999999999854
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8.2e-18 Score=155.26 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=127.9
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
.+++++. .+|..+. ++|+.|+|++|.|++..|..|.++++|++|+|++|+|+...+..|..+++|++|+|++|++++
T Consensus 26 c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 26 CRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp CTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence 4566665 4555443 889999999999998889999999999999999999997667788999999999999999998
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE 161 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 161 (461)
..+..|..+++|++|+|++|++. .+|..+..+. +|++|+|++|++++.
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-------------------------------~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-------------------------------HLTHLALDQNQLKSI 150 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-------------------------------TCSEEECCSSCCCCC
T ss_pred cChhHhCcchhhCeEeccCCccc-ccCcccccCC-------------------------------CCCEEECCCCcCCcc
Confidence 87888999999999999999998 6666553332 367799999999977
Q ss_pred CCccccCCCcccEEeccCCcccCCC
Q 045177 162 LPPYLGKMTTLKVLDLSFNKLSGHI 186 (461)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~ 186 (461)
.+..+..+++|+.|+|++|.+....
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CHHHHhCCCCCCEEEeeCCCccCCc
Confidence 7778999999999999999998543
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=5.2e-18 Score=159.98 Aligned_cols=171 Identities=21% Similarity=0.296 Sum_probs=122.5
Q ss_pred cCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEE
Q 045177 17 NISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKL 96 (461)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 96 (461)
.+.+++.++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|+|++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 45667777888888874 33 5777888888888888887 455 57788888888888888885443 7888888888
Q ss_pred EccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEe
Q 045177 97 FIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLD 176 (461)
Q Consensus 97 ~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (461)
++++|++.+ +|. +...+|++|+|++|++++ ++ .+..+++|+.|+
T Consensus 91 ~L~~N~l~~-l~~---------------------------------~~~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 91 SVNRNRLKN-LNG---------------------------------IPSACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp ECCSSCCSC-CTT---------------------------------CCCSSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred ECCCCccCC-cCc---------------------------------cccCcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 888887763 221 001237778888888874 33 477888888888
Q ss_pred ccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccCCccccccCcccCC
Q 045177 177 LSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 177 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~~ 231 (461)
|++|+|++ ++ .+..+++|+.|+|++|++++...-.-+++|+.|+|++|++++.
T Consensus 135 Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 135 IRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcccCC
Confidence 88888874 33 5777888888888888887552222256777888888888765
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1e-17 Score=174.09 Aligned_cols=205 Identities=20% Similarity=0.281 Sum_probs=144.6
Q ss_pred CcCCCCCchhhhcCCCCcEEeeccccCCCCC-chhhcCCC-----CCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCc
Q 045177 5 NRLTGPIPKYLANISTLVNLTVQYNQFSGEL-PEELGSLL-----NLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQ 78 (461)
Q Consensus 5 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~-----~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 78 (461)
|.+.+.++..+..+... ..+...+.. +..+..++ +|+.|+|++|.+++ +|..+ .++|++|+|++|+
T Consensus 20 n~~~~~~~~~~~~l~~W-----~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~ 91 (571)
T 3cvr_A 20 NTISGTYADYFSAWDKW-----EKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA 91 (571)
T ss_dssp -----CHHHHHHHHHHH-----HTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC
T ss_pred hcccccchhHHHHHHHH-----hccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC
Confidence 45666666655544332 122222222 22455554 99999999999996 67655 3799999999999
Q ss_pred CCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcc
Q 045177 79 FTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNI 158 (461)
Q Consensus 79 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l 158 (461)
++ .+| ..+++|++|++++|.+++ +|. +.. +|+. +.+++ +.+.. +|. ...+|+.|+|++|.|
T Consensus 92 l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~--------L~Ls~-N~l~~-lp~-~l~~L~~L~Ls~N~l 152 (571)
T 3cvr_A 92 LI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKH--------LDVDN-NQLTM-LPE-LPALLEYINADNNQL 152 (571)
T ss_dssp CS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCE--------EECCS-SCCSC-CCC-CCTTCCEEECCSSCC
T ss_pred Cc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCE--------EECCC-CcCCC-CCC-cCccccEEeCCCCcc
Confidence 99 666 558999999999999986 776 543 4444 34443 12222 344 334599999999999
Q ss_pred cccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccccccC-------CccccccCcccCC
Q 045177 159 TGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKG-------DKIDLSYNNFTDG 231 (461)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l-------~~LdLs~N~l~~~ 231 (461)
++ +|. .+++|+.|+|++|+|++ +|. +. ++|+.|+|++|+|+ .+|. +..+| +.|+|++|+|+.
T Consensus 153 ~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~- 221 (571)
T 3cvr_A 153 TM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRITH- 221 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCCC-
T ss_pred Cc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCccee-
Confidence 95 665 57899999999999996 776 65 89999999999999 7777 76678 999999999996
Q ss_pred CCcccccccccceeec
Q 045177 232 SAESSCQKRSVNLFAS 247 (461)
Q Consensus 232 ~p~~~c~~~~l~~~~~ 247 (461)
+|..++.+..|..+..
T Consensus 222 lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 222 IPENILSLDPTCTIIL 237 (571)
T ss_dssp CCGGGGGSCTTEEEEC
T ss_pred cCHHHhcCCCCCEEEe
Confidence 7887777666665543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=2.4e-18 Score=162.29 Aligned_cols=166 Identities=23% Similarity=0.385 Sum_probs=136.1
Q ss_pred CCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCC
Q 045177 2 LLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTG 81 (461)
Q Consensus 2 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 81 (461)
|+.|.++... .+..+++|+.|++++|.++ .++ .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++
T Consensus 26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC
T ss_pred hcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC
Confidence 5677887544 5889999999999999999 555 68999999999999999996544 9999999999999999995
Q ss_pred CCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc
Q 045177 82 QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE 161 (461)
Q Consensus 82 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 161 (461)
++.. .. ++|++|++++|++.+. + .+..+ .+|++|+|++|++++.
T Consensus 100 -l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l-------------------------------~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 100 -LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHL-------------------------------KNLEILSIRNNKLKSI 143 (263)
T ss_dssp -CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTC-------------------------------TTCCEEECTTSCCCBC
T ss_pred -cCcc-cc-CcccEEEccCCccCCC-h-hhcCc-------------------------------ccccEEECCCCcCCCC
Confidence 4433 33 9999999999998742 1 11111 2388899999999954
Q ss_pred CCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc
Q 045177 162 LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM 214 (461)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 214 (461)
+ .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++. |..+
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~-~~~~ 191 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE-PVKY 191 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC-CEEC
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC-cccc
Confidence 4 688999999999999999965 6789999999999999999854 5443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.2e-17 Score=175.28 Aligned_cols=163 Identities=21% Similarity=0.301 Sum_probs=136.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
+|++|+|... | .|..+++|+.|+|++|.|++..+ +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++.
T Consensus 49 ~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~ 122 (605)
T 1m9s_A 49 IANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS 122 (605)
T ss_dssp BCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC
T ss_pred ECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC
Confidence 4678888754 3 58999999999999999996544 9999999999999999994 44 6999999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
+ + ..+..+++|+.|+|++|.+.+. ..+..+ .+|+.|+|++|.+++
T Consensus 123 ~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-------------------------------~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 123 D-I-NGLVHLPQLESLYLGNNKITDI--TVLSRL-------------------------------TKLDTLSLEDNQISD 167 (605)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSC-------------------------------TTCSEEECCSSCCCC
T ss_pred C-C-ccccCCCccCEEECCCCccCCc--hhhccc-------------------------------CCCCEEECcCCcCCC
Confidence 5 3 4689999999999999998742 111111 237889999999996
Q ss_pred cCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCC
Q 045177 161 ELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTG 208 (461)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 208 (461)
..| +..+++|+.|+|++|+|++ ++ .+..+++|+.|+|++|++++
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred chh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 655 8899999999999999995 43 68899999999999999984
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=1.1e-20 Score=192.57 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCCCcCCCCCchhhh-cCC----CCcEEeeccccCCC----CCchhhcCCCCCCEEEccCCcCCCCchhhhh-----CC
Q 045177 1 SLLANRLTGPIPKYLA-NIS----TLVNLTVQYNQFSG----ELPEELGSLLNLEKLHLSSNNFTGELPKTFA-----KL 66 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~-~l~----~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l 66 (461)
+|++|++....+..+. .++ +|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+. .+
T Consensus 62 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred eCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 4666776655444443 344 57777777777763 3466677777777777777777643333322 24
Q ss_pred CCcCEEEeeCCcCCCCC----chhhccCCCCcEEEccCCCCcc
Q 045177 67 TNMKDFRIGDNQFTGQI----PSFIQNWTKLEKLFIQPSGLVG 105 (461)
Q Consensus 67 ~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~n~l~~ 105 (461)
++|++|+|++|+++... +..+..+++|++|++++|.+..
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 56777777777776532 4455666777777777777653
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=6.7e-18 Score=152.03 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=126.1
Q ss_pred hcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCccccccccc
Q 045177 39 LGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFN 118 (461)
Q Consensus 39 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 118 (461)
...+++|++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+.+..+..+..+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l---- 111 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGL---- 111 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTC----
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCC----
Confidence 367789999999999999 666 6899999999999999776 3 3478999999999999999986555544332
Q ss_pred ccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCc-ccCCCCccccCCCCCC
Q 045177 119 GLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNK-LSGHIPSNFDDLYEVD 197 (461)
Q Consensus 119 ~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~ 197 (461)
.+|++|+|++|.+++..+..+..+++|+.|+|++|+ ++ .+| .+..+++|+
T Consensus 112 ---------------------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 112 ---------------------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELK 162 (197)
T ss_dssp ---------------------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCC
T ss_pred ---------------------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCC
Confidence 237779999999998788889999999999999998 66 555 688999999
Q ss_pred EEEccCCcCCCCCCccccccCCccccccCcccC
Q 045177 198 YIYFTGNLLTGAIPPWMLEKGDKIDLSYNNFTD 230 (461)
Q Consensus 198 ~L~L~~N~l~~~~p~~~~~~l~~LdLs~N~l~~ 230 (461)
.|++++|++++..+-.-+++|+.|++++|++.+
T Consensus 163 ~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 163 SLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred EEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 999999999964433347889999999999864
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=2.5e-18 Score=169.07 Aligned_cols=216 Identities=15% Similarity=0.151 Sum_probs=153.7
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCc-hhhcCCCCCCE-EEccCCcCCCCchhhhhCCCCcCEEEeeCCc
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELP-EELGSLLNLEK-LHLSSNNFTGELPKTFAKLTNMKDFRIGDNQ 78 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 78 (461)
+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.++++|++ +.++.|+++...|..|..+++|++|++++|+
T Consensus 36 ~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 36 RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp EEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred EccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence 478999998777899999999999999999876555 46889998775 6677899997778899999999999999999
Q ss_pred CCCCCchhhccCCCCcEEEccCC-CCccCCCCcccccccccccccceeeeecccCCCCCCCCCcc-cCCccccEEEccc-
Q 045177 79 FTGQIPSFIQNWTKLEKLFIQPS-GLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNKKMTNLILRN- 155 (461)
Q Consensus 79 l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~~L~~L~L~~- 155 (461)
++...+..+....++..|++.++ .+....+..+..+.. .+.. +.++. +.+....+. +...+|++|++++
T Consensus 116 l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~-----~l~~--L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-----ESVI--LWLNK-NGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-----SCEE--EECCS-SCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccCCchhhcccchhhhhhhccccccccccccchhhcch-----hhhh--hcccc-ccccCCChhhccccchhHHhhccC
Confidence 99777777888889999999764 555333333333321 1222 33333 222211112 3445599999975
Q ss_pred CcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCc-cccccCCccccccCc
Q 045177 156 CNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPP-WMLEKGDKIDLSYNN 227 (461)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~~l~~LdLs~N~ 227 (461)
|.++...+..|..+++|+.|||++|+|+. +|.. .+.+|+.|.+.++.--..+|. .-+++|+.++++++.
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 66774445678999999999999999994 5442 355677776655443336664 226778888887643
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3.1e-19 Score=186.23 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=142.1
Q ss_pred hcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCc-------------CCCCchhhhhCCCCcCEEE-eeCCcCCC
Q 045177 16 ANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN-------------FTGELPKTFAKLTNMKDFR-IGDNQFTG 81 (461)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~ 81 (461)
..+++|+.|+|++|+++ .+|+.++++++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56889999999999998 789999999999999998775 5567788888999999988 6666543
Q ss_pred CCch------hhcc--CCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEc
Q 045177 82 QIPS------FIQN--WTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLIL 153 (461)
Q Consensus 82 ~~p~------~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L 153 (461)
.++. .+.. ...|+.|+|++|.+++ +|. +..+. +|+.|+|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~-------------------------------~L~~L~L 470 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLL-------------------------------LVTHLDL 470 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGT-------------------------------TCCEEEC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccc-------------------------------cCcEeec
Confidence 1111 1111 1368999999999874 453 43332 2667899
Q ss_pred ccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCC-Cccc--cccCCccccccCcccC
Q 045177 154 RNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAI-PPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~--~~~l~~LdLs~N~l~~ 230 (461)
++|.|+ .+|..++.+++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..+ +++|+.|+|++|++++
T Consensus 471 s~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 471 SHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred Cccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 999998 778888999999999999999985 66 7888999999999999998765 7776 6788899999999988
Q ss_pred CCCc
Q 045177 231 GSAE 234 (461)
Q Consensus 231 ~~p~ 234 (461)
.+|.
T Consensus 548 ~~~~ 551 (567)
T 1dce_A 548 EEGI 551 (567)
T ss_dssp SSSC
T ss_pred CccH
Confidence 6553
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=3.4e-19 Score=185.93 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=49.6
Q ss_pred ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCcccccc
Q 045177 148 MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSY 225 (461)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~ 225 (461)
|+.|+|++|.|++ +|. ++.+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++ +| .+ +++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555555553 343 555555555555555555 455555555555555555555553 34 23 34555555555
Q ss_pred CcccCCC-Cccccccccccee
Q 045177 226 NNFTDGS-AESSCQKRSVNLF 245 (461)
Q Consensus 226 N~l~~~~-p~~~c~~~~l~~~ 245 (461)
|+|++.. |..+..+..|..+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEE
T ss_pred CCCCCCCCcHHHhcCCCCCEE
Confidence 5555544 5544444444433
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.3e-16 Score=143.10 Aligned_cols=132 Identities=18% Similarity=0.296 Sum_probs=79.5
Q ss_pred cEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchh-hhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 22 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPK-TFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 22 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
+.|++++|.++ .+|..+.. +|++|+|++|++++..+. .|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45666666665 44443322 556666666666533332 255555555555555555555555555555555555554
Q ss_pred CCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCC
Q 045177 101 SGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFN 180 (461)
Q Consensus 101 n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 180 (461)
| +|++..+..|..+++|+.|+|++|
T Consensus 88 N-------------------------------------------------------~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 88 N-------------------------------------------------------KIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp C-------------------------------------------------------CCCEECSSSSTTCTTCCEEECCSS
T ss_pred C-------------------------------------------------------cCCccCHHHhcCCCCCCEEECCCC
Confidence 4 444445555666777777777777
Q ss_pred cccCCCCccccCCCCCCEEEccCCcCCCCCC
Q 045177 181 KLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211 (461)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 211 (461)
+|++..|..+..+++|++|+|++|.+++..+
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7777677777777777777777777776554
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=6.9e-18 Score=181.28 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=53.8
Q ss_pred chhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCC
Q 045177 59 LPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEA 138 (461)
Q Consensus 59 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~ 138 (461)
.+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~---------------------- 271 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN---------------------- 271 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT----------------------
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC----------------------
Confidence 3444555555555555555555 34444445555555555555554 44443333222
Q ss_pred CCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCcc
Q 045177 139 TFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPW 213 (461)
Q Consensus 139 ~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 213 (461)
|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|..|..+++|+.|+|++|.|++.+|..
T Consensus 272 ---------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 272 ---------LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp ---------CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred ---------CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 333444444444 34444444444444444444444 34444444444444444444444444433
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.6e-17 Score=178.44 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=120.6
Q ss_pred ccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccC
Q 045177 27 QYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGP 106 (461)
Q Consensus 27 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 106 (461)
+.|.+. ..++.+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|.++ .
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 334444 55778999999999999999999 77777889999999999999999 88999999999999999999998 7
Q ss_pred CCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCC
Q 045177 107 IPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHI 186 (461)
Q Consensus 107 ~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 186 (461)
+|..+..+.+ |++|+|++|.|+ .+|..|+.+++|+.|+|++|.|++.+
T Consensus 285 lp~~~~~l~~-------------------------------L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 285 LPAELGSCFQ-------------------------------LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CCSSGGGGTT-------------------------------CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred cChhhcCCCC-------------------------------CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCC
Confidence 7877655433 667999999998 78888999999999999999999988
Q ss_pred CccccCCCC-CCEEEccCCcCCCCCCccccccCCccccccC
Q 045177 187 PSNFDDLYE-VDYIYFTGNLLTGAIPPWMLEKGDKIDLSYN 226 (461)
Q Consensus 187 p~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~~l~~LdLs~N 226 (461)
|..+..+.. +..|+|++|.+++.+|.. ++.|+++.|
T Consensus 333 p~~~~~~~~~~~~l~l~~N~l~~~~p~~----l~~l~l~~n 369 (727)
T 4b8c_D 333 LKILTEKSVTGLIFYLRDNRPEIPLPHE----RRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCCCC-------------
T ss_pred hHHHhhcchhhhHHhhccCcccCcCccc----cceeEeecc
Confidence 887765432 234789999999888864 556777777
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.9e-16 Score=138.61 Aligned_cols=84 Identities=18% Similarity=0.308 Sum_probs=44.9
Q ss_pred CCCcEEeeccccCC-CCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEE
Q 045177 19 STLVNLTVQYNQFS-GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLF 97 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 97 (461)
++|+.|++++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 44454455555555555555555533 4455555555555555555544455555555555555
Q ss_pred ccCCCCc
Q 045177 98 IQPSGLV 104 (461)
Q Consensus 98 L~~n~l~ 104 (461)
+++|.+.
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 5555443
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.6e-16 Score=142.38 Aligned_cols=103 Identities=19% Similarity=0.322 Sum_probs=87.3
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCch-hhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPE-ELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 79 (461)
++++|+|+ .+|..+. .+|+.|++++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++|++
T Consensus 14 ~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 14 DCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp ECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 46788885 5666554 3899999999999966654 489999999999999999988899999999999999999999
Q ss_pred CCCCchhhccCCCCcEEEccCCCCccC
Q 045177 80 TGQIPSFIQNWTKLEKLFIQPSGLVGP 106 (461)
Q Consensus 80 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ 106 (461)
++..+..|..+++|++|+|++|++++.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCee
Confidence 988887788888888888877777643
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=8.3e-16 Score=131.64 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=66.6
Q ss_pred CCCCcEEeeccccCC-CCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEE
Q 045177 18 ISTLVNLTVQYNQFS-GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKL 96 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 96 (461)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888887 67777778888888888888888854 567788888888888888886677777777888888
Q ss_pred EccCCCCc
Q 045177 97 FIQPSGLV 104 (461)
Q Consensus 97 ~L~~n~l~ 104 (461)
++++|.+.
T Consensus 94 ~ls~N~i~ 101 (149)
T 2je0_A 94 NLSGNKIK 101 (149)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCC
Confidence 87777765
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=132.37 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=78.7
Q ss_pred cEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCC
Q 045177 22 VNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPS 101 (461)
Q Consensus 22 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n 101 (461)
+.+++++|.++ .+|..+. ++|++|+|++|.|+ .+|..|..+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-- 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-- 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC--
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC--
Confidence 45566666665 4444332 35666666666665 444555556666666666666555444455555555555554
Q ss_pred CCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCcccEEeccCCc
Q 045177 102 GLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNK 181 (461)
Q Consensus 102 ~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (461)
+|.|++..+..|..+++|+.|+|++|+
T Consensus 87 -----------------------------------------------------~N~l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 87 -----------------------------------------------------YNRLRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp -----------------------------------------------------SSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred -----------------------------------------------------CCccCEeCHHHhCCCCCCCEEECCCCC
Confidence 444444445566777778888888888
Q ss_pred ccCCCCccccCCCCCCEEEccCCcCCC
Q 045177 182 LSGHIPSNFDDLYEVDYIYFTGNLLTG 208 (461)
Q Consensus 182 l~~~~p~~l~~l~~L~~L~L~~N~l~~ 208 (461)
|+...+..|..+++|+.|+|++|.+..
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 114 ISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCeeChhhhhcCccccEEEeCCCCeec
Confidence 875555567778888888888888764
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=7.7e-15 Score=131.52 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=68.5
Q ss_pred ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCcccccc
Q 045177 148 MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSY 225 (461)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~ 225 (461)
|++|+|++|.|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+...+..+ +++++.|+|++
T Consensus 56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 4445566666665566778899999999999999998888899999999999999999995554445 56889999999
Q ss_pred CcccC
Q 045177 226 NNFTD 230 (461)
Q Consensus 226 N~l~~ 230 (461)
|++..
T Consensus 136 N~~~C 140 (193)
T 2wfh_A 136 NPLYC 140 (193)
T ss_dssp SCEEC
T ss_pred CCeec
Confidence 99975
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.1e-15 Score=130.96 Aligned_cols=128 Identities=19% Similarity=0.161 Sum_probs=88.7
Q ss_pred CCCCCEEEccCCcCC-CCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCccccccccccc
Q 045177 42 LLNLEKLHLSSNNFT-GELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGL 120 (461)
Q Consensus 42 l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 120 (461)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------ 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC------ 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC------
Confidence 357888888888887 66777778888888888888888754 667778888888888887765444332222
Q ss_pred ccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc-CCccccCCCcccEEeccCCcccCCCC---ccccCCCCC
Q 045177 121 VCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE-LPPYLGKMTTLKVLDLSFNKLSGHIP---SNFDDLYEV 196 (461)
Q Consensus 121 ~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 196 (461)
.+|++|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|
T Consensus 88 -------------------------~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 88 -------------------------PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp -------------------------TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred -------------------------CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 1256677777777742 23566777777777777777775444 356677777
Q ss_pred CEEEcc
Q 045177 197 DYIYFT 202 (461)
Q Consensus 197 ~~L~L~ 202 (461)
+.|+++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 777765
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=128.16 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=45.9
Q ss_pred ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCC
Q 045177 148 MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIP 211 (461)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 211 (461)
|++|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|++|+|++|.+++..|
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 4445555555554455556777888888888888886555566778888888888888886554
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.3e-14 Score=127.94 Aligned_cols=66 Identities=27% Similarity=0.248 Sum_probs=33.8
Q ss_pred cccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccC
Q 045177 165 YLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 165 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~ 230 (461)
.+..+++|+.|+|++|+|++..+..+..+++|++|+|++|++++..+..+ +++++.|+|++|++++
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 34455555555555555554444445555555555555555553322222 3445555555555554
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=4.1e-15 Score=129.97 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=93.7
Q ss_pred CCCCCcCC-CCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC
Q 045177 1 SLLANRLT-GPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 1 ~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 79 (461)
+|++|+++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|+|++|.+++.+|..+..+++|++|+|++|++
T Consensus 30 ~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 107 (168)
T 2ell_A 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107 (168)
T ss_dssp ECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSC
T ss_pred ECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCcc
Confidence 47899998 78898899999999999999999965 6799999999999999999977888888899999999999999
Q ss_pred CCCCc-hhhccCCCCcEEEccCCCCccC
Q 045177 80 TGQIP-SFIQNWTKLEKLFIQPSGLVGP 106 (461)
Q Consensus 80 ~~~~p-~~~~~l~~L~~L~L~~n~l~~~ 106 (461)
++... ..+..+++|++|++++|.+.+.
T Consensus 108 ~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 108 KDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp CSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred CcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 95432 7899999999999999999843
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=7.7e-17 Score=145.18 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=112.9
Q ss_pred hhcCCCCcEEeeccccCCCCCch------hhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhc
Q 045177 15 LANISTLVNLTVQYNQFSGELPE------ELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQ 88 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 88 (461)
+.....++.++++.+.+.+..|. .+..+++|++|+|++|.+++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 56677888888888888877765 78888888888888888885 56 7888888888888888888 6677777
Q ss_pred cCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCC-cccc
Q 045177 89 NWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELP-PYLG 167 (461)
Q Consensus 89 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~-~~~~ 167 (461)
.+++|++|++++|++.+ +| .+..+ .+|++|+|++|.+++..+ ..+.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l-------------------------------~~L~~L~l~~N~i~~~~~~~~l~ 137 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKL-------------------------------VNLRVLYMSNNKITNWGEIDKLA 137 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHH-------------------------------HHSSEEEESEEECCCHHHHHHHT
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccC-------------------------------CCCCEEECCCCcCCchhHHHHHh
Confidence 78888888888888763 22 12211 126668888888774322 3577
Q ss_pred CCCcccEEeccCCcccCCCCc----------cccCCCCCCEEEccCCcCC
Q 045177 168 KMTTLKVLDLSFNKLSGHIPS----------NFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 168 ~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~L~~N~l~ 207 (461)
.+++|+.|++++|.+++..|. .+..+++|+.|+ +|.++
T Consensus 138 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 788888888888888755443 256677777765 55554
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=6.9e-15 Score=129.70 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=50.5
Q ss_pred hhcCCCCcEEeeccccCCCCCchhhcCCC-CCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCC
Q 045177 15 LANISTLVNLTVQYNQFSGELPEELGSLL-NLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKL 93 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 93 (461)
+.++++|+.|++++|.++ .+|. +..+. +|++|+|++|.+++. ..+..+++|++|+|++|++++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445666666666666666 3343 33333 666666666666632 446666666666666666664444444666666
Q ss_pred cEEEccCCCCc
Q 045177 94 EKLFIQPSGLV 104 (461)
Q Consensus 94 ~~L~L~~n~l~ 104 (461)
++|++++|.+.
T Consensus 91 ~~L~L~~N~i~ 101 (176)
T 1a9n_A 91 TELILTNNSLV 101 (176)
T ss_dssp CEEECCSCCCC
T ss_pred CEEECCCCcCC
Confidence 66666666553
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=4.8e-14 Score=137.13 Aligned_cols=220 Identities=14% Similarity=0.025 Sum_probs=140.3
Q ss_pred CCCCcEEeeccccCC--------------------CCCchhhcC--------CCCCCEEEccCCcCCCCchhhhhCCCCc
Q 045177 18 ISTLVNLTVQYNQFS--------------------GELPEELGS--------LLNLEKLHLSSNNFTGELPKTFAKLTNM 69 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~--------------------~~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 69 (461)
+++|+.|||++|++. ...+..|.+ +++|+.|+|.. .++.+.+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 788999999999988 122345666 77788888777 6765555677777888
Q ss_pred CEEEeeCCcCCCCCchhhccCCCCcEEEccCCCC----ccCCCCcccccccccc--------------------ccccee
Q 045177 70 KDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGL----VGPIPSGIFSLEKFNG--------------------LVCMVF 125 (461)
Q Consensus 70 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~~~~l~~L~~--------------------L~~l~~ 125 (461)
+.|++++|.+....+.+|..+.++..+.+..+.. .......+..+..|+. ...+..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888877777766666777776666666554221 1111112222222220 000000
Q ss_pred eeecccCCCCCCCCCccc--CCccccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCC-EEEcc
Q 045177 126 LFLRISDLNGPEATFPQL--GNKKMTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVD-YIYFT 202 (461)
Q Consensus 126 ~~l~~~~l~~~~~~~~~l--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~L~ 202 (461)
+.+... .....+..+ ...+|+.|+|++|+++......|.++.+|+.|+|.+| ++...+.+|.++.+|+ .|+|.
T Consensus 207 --l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 207 --LTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp --EEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred --EEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence 000000 000000000 0234999999999999777778999999999999998 7767778899999999 99999
Q ss_pred CCcCCCCCCccc--cccCCccccccCcccCCCCcccccccccc
Q 045177 203 GNLLTGAIPPWM--LEKGDKIDLSYNNFTDGSAESSCQKRSVN 243 (461)
Q Consensus 203 ~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~~p~~~c~~~~l~ 243 (461)
+ .++...+..| +.+|+.|++++|+++...+..+.....|.
T Consensus 283 ~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 283 A-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp T-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred c-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 8 7774445555 56788999999999887666664444443
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.3e-13 Score=120.86 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=89.9
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
++++|+|+. +|..+ .++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+++
T Consensus 15 ~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 15 DCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp ECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 468888875 56554 388999999999999888888999999999999999999777778899999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCcc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLVG 105 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~~ 105 (461)
+..+..|..+++|++|+|++|.+..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7777789999999999999999874
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=7.3e-16 Score=138.74 Aligned_cols=146 Identities=19% Similarity=0.283 Sum_probs=118.9
Q ss_pred CCCCCcCCCCCch------hhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEe
Q 045177 1 SLLANRLTGPIPK------YLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRI 74 (461)
Q Consensus 1 ~Ls~N~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 74 (461)
+|+.+++.+.+|. .|..+++|+.|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEEC
Confidence 4667788888776 99999999999999999995 67 8999999999999999999 67888888899999999
Q ss_pred eCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcc
Q 045177 75 GDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILR 154 (461)
Q Consensus 75 s~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~ 154 (461)
++|++++ +| .+..+++|++|++++|.+... +. +..+.. ..+|++|+++
T Consensus 101 ~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~-~~----~~~l~~-------------------------l~~L~~L~l~ 148 (198)
T 1ds9_A 101 SYNQIAS-LS-GIEKLVNLRVLYMSNNKITNW-GE----IDKLAA-------------------------LDKLEDLLLA 148 (198)
T ss_dssp EEEECCC-HH-HHHHHHHSSEEEESEEECCCH-HH----HHHHTT-------------------------TTTCSEEEEC
T ss_pred cCCcCCc-CC-ccccCCCCCEEECCCCcCCch-hH----HHHHhc-------------------------CCCCCEEEec
Confidence 9999995 45 689999999999999988631 11 001111 1237889999
Q ss_pred cCcccccCCcc----------ccCCCcccEEeccCCccc
Q 045177 155 NCNITGELPPY----------LGKMTTLKVLDLSFNKLS 183 (461)
Q Consensus 155 ~n~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~ 183 (461)
+|.+++.+|.. +..+++|+.|| +|.++
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99998765542 77899999997 77776
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=1.4e-13 Score=121.08 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=88.5
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCC
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFT 80 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 80 (461)
++++|+++ .+|..+. ++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+++
T Consensus 18 ~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 18 NCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp ECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 46788885 5666553 88999999999999888889999999999999999999766667899999999999999999
Q ss_pred CCCchhhccCCCCcEEEccCCCCc
Q 045177 81 GQIPSFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 81 ~~~p~~~~~l~~L~~L~L~~n~l~ 104 (461)
+..+..|..+++|++|+|++|.+.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred eeCHHHhccccCCCEEEeCCCCcc
Confidence 776667999999999999999987
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=7.5e-15 Score=154.15 Aligned_cols=78 Identities=9% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCCCCCEEEccCCcCCCC----chhhhhCCCCcCEEEeeCCcCCC----CCchhhccCCCCcEEEccCCCCccCCCCccc
Q 045177 41 SLLNLEKLHLSSNNFTGE----LPKTFAKLTNMKDFRIGDNQFTG----QIPSFIQNWTKLEKLFIQPSGLVGPIPSGIF 112 (461)
Q Consensus 41 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 112 (461)
++++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|+.|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 556666677766666544 34445566667777776666652 233344566777777777766653 344444
Q ss_pred ccccccc
Q 045177 113 SLEKFNG 119 (461)
Q Consensus 113 ~l~~L~~ 119 (461)
.+++|+.
T Consensus 241 ~~~~L~~ 247 (592)
T 3ogk_B 241 AAANLEE 247 (592)
T ss_dssp HCTTCCE
T ss_pred hhhHHHh
Confidence 4444433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.4e-13 Score=121.20 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=77.9
Q ss_pred hhcCCCCCCEEEccCCcCCCCchhhhhCCC-CcCEEEeeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCccccccc
Q 045177 38 ELGSLLNLEKLHLSSNNFTGELPKTFAKLT-NMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEK 116 (461)
Q Consensus 38 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 116 (461)
.+.++.+|+.|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l-- 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL-- 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC--
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC--
Confidence 3566777888888888877 3444 33443 777777777777743 466667777777777776653211111111
Q ss_pred ccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCc--cccCCCcccEEeccCCcccCCCCcc----c
Q 045177 117 FNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPP--YLGKMTTLKVLDLSFNKLSGHIPSN----F 190 (461)
Q Consensus 117 L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l 190 (461)
.+|++|+|++|.++ .+|. .+..+++|+.|++++|.++ .+|.. +
T Consensus 88 -----------------------------~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~ 136 (176)
T 1a9n_A 88 -----------------------------PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVI 136 (176)
T ss_dssp -----------------------------TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHH
T ss_pred -----------------------------CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHH
Confidence 12455666666664 3343 4556666666666666665 34442 5
Q ss_pred cCCCCCCEEEccCCcCC
Q 045177 191 DDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 191 ~~l~~L~~L~L~~N~l~ 207 (461)
..+++|+.|++++|.+.
T Consensus 137 ~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 137 YKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCSEETTEECCHH
T ss_pred HHCCccceeCCCcCCHH
Confidence 55666666666655543
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=1.6e-14 Score=151.71 Aligned_cols=210 Identities=15% Similarity=0.140 Sum_probs=144.3
Q ss_pred hhcCCCCcEEeeccccCCCC----CchhhcCCCCCCEEEccCCcCC----CCchhhhhCCCCcCEEEeeCCcCCCCCchh
Q 045177 15 LANISTLVNLTVQYNQFSGE----LPEELGSLLNLEKLHLSSNNFT----GELPKTFAKLTNMKDFRIGDNQFTGQIPSF 86 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 86 (461)
..++++|++|+|++|.+++. ++..+..+++|++|+|++|.++ ..++..+..+++|+.|+|++|.+.+ ++..
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGF 238 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence 34789999999999998765 4455678999999999999997 3455567789999999999999984 7789
Q ss_pred hccCCCCcEEEccCCCCc---cCCCCcccccccccccccceeeeecccCCCCCCCCCcc-cCCc-cccEEEcccCccccc
Q 045177 87 IQNWTKLEKLFIQPSGLV---GPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQ-LGNK-KMTNLILRNCNITGE 161 (461)
Q Consensus 87 ~~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~-l~~~-~L~~L~L~~n~l~~~ 161 (461)
+..+++|++|+++..... ...+..+..+.+|+. +.+... ....++. +... +|++|+|++|.+++.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~--------L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR--------LGLSYM--GPNEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCE--------EEETTC--CTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccc--------cCcccc--chhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 999999999999864333 122233333333333 333331 1222333 3333 399999999987654
Q ss_pred CC-ccccCCCcccEEeccCCcccC-CCCccccCCCCCCEEEccC-----------CcCCCCCCccc---cccCCcccccc
Q 045177 162 LP-PYLGKMTTLKVLDLSFNKLSG-HIPSNFDDLYEVDYIYFTG-----------NLLTGAIPPWM---LEKGDKIDLSY 225 (461)
Q Consensus 162 ~~-~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~-----------N~l~~~~p~~~---~~~l~~LdLs~ 225 (461)
.. ..+..+++|+.|+++ +.+.+ .++..+..+++|++|+|++ |.+++.....+ +++|++|+++.
T Consensus 309 ~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 33 346788999999998 44442 3344446678899999993 56653322221 56788889888
Q ss_pred CcccCCCCccc
Q 045177 226 NNFTDGSAESS 236 (461)
Q Consensus 226 N~l~~~~p~~~ 236 (461)
|++++..+..+
T Consensus 388 ~~l~~~~~~~l 398 (592)
T 3ogk_B 388 SDITNESLESI 398 (592)
T ss_dssp SCCCHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 88887655444
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=6.8e-13 Score=128.99 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=105.3
Q ss_pred CCchhhhc--------CCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC--
Q 045177 10 PIPKYLAN--------ISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF-- 79 (461)
Q Consensus 10 ~~p~~~~~--------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-- 79 (461)
+.+.+|.+ +++|+.|+|.. .++.+.+.+|.++++|+.|+++.|.+..+.+.+|.++.++..+.+..+..
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 34567888 99999999999 88867777899999999999999999866677788877777766554211
Q ss_pred --CC----------------------CCch---------------------------hh-ccCCCCcEEEccCCCCccCC
Q 045177 80 --TG----------------------QIPS---------------------------FI-QNWTKLEKLFIQPSGLVGPI 107 (461)
Q Consensus 80 --~~----------------------~~p~---------------------------~~-~~l~~L~~L~L~~n~l~~~~ 107 (461)
.. .++. .+ ..+++|+.|+|++|++....
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC
T ss_pred ccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec
Confidence 00 0000 00 13789999999998887444
Q ss_pred CCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCccc-EEeccCCcccCCC
Q 045177 108 PSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLK-VLDLSFNKLSGHI 186 (461)
Q Consensus 108 p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~ 186 (461)
+..+..+.+ |+.|+|.+| ++...+.+|.++.+|+ .|++.+ .++...
T Consensus 243 ~~aF~~~~~-------------------------------L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 243 DFTFAQKKY-------------------------------LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp TTTTTTCTT-------------------------------CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred HhhhhCCCC-------------------------------CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc
Confidence 444444444 444555554 4434445555555565 555555 444344
Q ss_pred CccccCCCCCCEEEccCCcCC
Q 045177 187 PSNFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 187 p~~l~~l~~L~~L~L~~N~l~ 207 (461)
+.+|.++++|+.|++++|.++
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCC
T ss_pred hhhhhCCccCCEEEeCCCccC
Confidence 455555555666665555555
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=2.9e-12 Score=112.17 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=89.6
Q ss_pred CCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEcc
Q 045177 20 TLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQ 99 (461)
Q Consensus 20 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 99 (461)
..+.|++++|.++ .+|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999999 577655 3799999999999998889999999999999999999998878889999999999999
Q ss_pred CCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccc
Q 045177 100 PSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITG 160 (461)
Q Consensus 100 ~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~ 160 (461)
+|++.+..+..+..+. +|++|+|++|.++.
T Consensus 87 ~N~l~~~~~~~~~~l~-------------------------------~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLK-------------------------------SLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCT-------------------------------TCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCC-------------------------------CCCEEEeCCCCCCC
Confidence 9999854443343332 26778999998873
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=5.3e-12 Score=110.91 Aligned_cols=84 Identities=19% Similarity=0.281 Sum_probs=75.0
Q ss_pred CcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEccC
Q 045177 21 LVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQP 100 (461)
Q Consensus 21 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 100 (461)
-+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999998 6777654 8999999999999988899999999999999999999977777789999999999999
Q ss_pred CCCccCC
Q 045177 101 SGLVGPI 107 (461)
Q Consensus 101 n~l~~~~ 107 (461)
|++.+..
T Consensus 91 N~l~~l~ 97 (174)
T 2r9u_A 91 NHLKSIP 97 (174)
T ss_dssp SCCCCCC
T ss_pred CccceeC
Confidence 9998533
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=3.6e-12 Score=124.62 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=85.1
Q ss_pred CCCC-cCCCCCchhhhcCCCCcEEeecc-ccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC
Q 045177 2 LLAN-RLTGPIPKYLANISTLVNLTVQY-NQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 2 Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 79 (461)
++++ +|+. +|. |..+++|+.|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..|.+|++|++|+|++|+|
T Consensus 15 ~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 15 CTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 4555 7775 666 88999999999996 999977778899999999999999999988888899999999999999999
Q ss_pred CCCCchhhccCCCCcEEEccCCCCc
Q 045177 80 TGQIPSFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 80 ~~~~p~~~~~l~~L~~L~L~~n~l~ 104 (461)
++..+..|..++ |+.|+|.+|.+.
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 976666777666 999999999886
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.28 E-value=8.8e-14 Score=145.98 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=41.6
Q ss_pred hhhhcCCCCcEE-eeccccCCCCCchhhcCCCCCCEEEccCCcCCCC-chhhhhCCCCcCEEEeeCCcCCCC-Cchhhcc
Q 045177 13 KYLANISTLVNL-TVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGE-LPKTFAKLTNMKDFRIGDNQFTGQ-IPSFIQN 89 (461)
Q Consensus 13 ~~~~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~ 89 (461)
..+.++++|+.| .+...... .++..+..+++|++|+|++|.++.. ++..+..+++|++|++++| ++.. ++.....
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 355666666666 33332221 3344444556666666666665522 1222445666666666655 3211 1222234
Q ss_pred CCCCcEEEc
Q 045177 90 WTKLEKLFI 98 (461)
Q Consensus 90 l~~L~~L~L 98 (461)
+++|++|++
T Consensus 337 ~~~L~~L~L 345 (594)
T 2p1m_B 337 CKDLRELRV 345 (594)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 566666666
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=1.8e-13 Score=143.56 Aligned_cols=87 Identities=11% Similarity=-0.026 Sum_probs=50.0
Q ss_pred cccEEEcccCcccccC-CccccCCCcccEEeccCCcccCC-CCccccCCCCCCEEEccC---------CcCCCCCCccc-
Q 045177 147 KMTNLILRNCNITGEL-PPYLGKMTTLKVLDLSFNKLSGH-IPSNFDDLYEVDYIYFTG---------NLLTGAIPPWM- 214 (461)
Q Consensus 147 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~---------N~l~~~~p~~~- 214 (461)
+|++|+|++|.+++.. ...+..+++|++|++++| +++. ++.....+++|++|+|.+ +.+++.....+
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 3888888888766432 223456778888888877 4322 222223467788887733 34442211111
Q ss_pred --cccCCccccccCcccCCCCc
Q 045177 215 --LEKGDKIDLSYNNFTDGSAE 234 (461)
Q Consensus 215 --~~~l~~LdLs~N~l~~~~p~ 234 (461)
+++|+.|+++.|.+++..+.
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHH
Confidence 45677777777777654433
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=2.4e-13 Score=134.39 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCCEEEccCCcCCCCchhhhhCC-----CCcCEEEeeCCcCCCCCchh-hccCCCCcEEEccCCCCccCCCCccccccc
Q 045177 43 LNLEKLHLSSNNFTGELPKTFAKL-----TNMKDFRIGDNQFTGQIPSF-IQNWTKLEKLFIQPSGLVGPIPSGIFSLEK 116 (461)
Q Consensus 43 ~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 116 (461)
++|+.|+|++|.++......+..+ ++|++|+|++|.++...... ...+++|+.|+|++|.+.......+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~-- 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-- 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH--
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH--
Confidence 456666666666663333322222 46667777666665332222 2234566677777766643211111110
Q ss_pred ccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc----CCccccCCCcccEEeccCCcccCC----CCc
Q 045177 117 FNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE----LPPYLGKMTTLKVLDLSFNKLSGH----IPS 188 (461)
Q Consensus 117 L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~p~ 188 (461)
+.. ...+|++|+|++|.|+.. ++..+..+++|++|+|++|+|++. ++.
T Consensus 150 L~~------------------------~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 150 LLH------------------------DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HHS------------------------TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HHh------------------------cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 000 012366677777766532 333345566777777777776632 244
Q ss_pred cccCCCCCCEEEccCCcCCCCCCccc------cccCCccccccCcccCCC
Q 045177 189 NFDDLYEVDYIYFTGNLLTGAIPPWM------LEKGDKIDLSYNNFTDGS 232 (461)
Q Consensus 189 ~l~~l~~L~~L~L~~N~l~~~~p~~~------~~~l~~LdLs~N~l~~~~ 232 (461)
.+...++|+.|+|++|.|++.....+ .+.|+.|||++|.|+...
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 45556677777777777764222222 345677777777776543
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.24 E-value=6.1e-11 Score=118.23 Aligned_cols=208 Identities=10% Similarity=0.057 Sum_probs=138.3
Q ss_pred CcCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCc
Q 045177 5 NRLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIP 84 (461)
Q Consensus 5 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 84 (461)
|.++.+...+|.++ +|+.+.|..+ ++.+...+|.+. +|+.+.|.. .++.+.+.+|.++++|+.++|.+|+++....
T Consensus 122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT
T ss_pred CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech
Confidence 45555666778775 6888888766 665556677774 688888886 6664556788888999999998888886555
Q ss_pred hhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCc
Q 045177 85 SFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPP 164 (461)
Q Consensus 85 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 164 (461)
..|. ..+|+.+.+..+ +...-...+..+.+|+. +.+.. +.....-..+...+|+.+.| .+.++.....
T Consensus 198 ~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~--------l~l~~-~l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~ 265 (401)
T 4fdw_A 198 STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKT--------IEIPE-NVSTIGQEAFRESGITTVKL-PNGVTNIASR 265 (401)
T ss_dssp TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCC--------EECCT-TCCEECTTTTTTCCCSEEEE-ETTCCEECTT
T ss_pred hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCE--------EecCC-CccCccccccccCCccEEEe-CCCccEEChh
Confidence 6666 588888888744 55444555666666666 33332 10000111244445888888 4456656677
Q ss_pred cccCCCcccEEeccCCccc-----CCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccC
Q 045177 165 YLGKMTTLKVLDLSFNKLS-----GHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTD 230 (461)
Q Consensus 165 ~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~ 230 (461)
+|.++++|+.+++.+|.+. ...+.+|..+++|+.+.|.+ .++..-...| +.+|+.|+|..| ++.
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 8888888888888887764 34566788888888888884 4663333444 456777777544 444
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.3e-13 Score=136.25 Aligned_cols=168 Identities=14% Similarity=0.163 Sum_probs=120.4
Q ss_pred CCCCcEEeeccccCCCCCchhhcC-----CCCCCEEEccCCcCCCCchhhh-hCCCCcCEEEeeCCcCCCCCchhh----
Q 045177 18 ISTLVNLTVQYNQFSGELPEELGS-----LLNLEKLHLSSNNFTGELPKTF-AKLTNMKDFRIGDNQFTGQIPSFI---- 87 (461)
Q Consensus 18 l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~---- 87 (461)
++.|+.|+|++|.++......+.. .++|++|+|++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 478999999999998544444333 3799999999999984433333 356789999999999985544444
Q ss_pred -ccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc----C
Q 045177 88 -QNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE----L 162 (461)
Q Consensus 88 -~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~----~ 162 (461)
...++|++|+|++|.++......+.. .|. ...+|++|+|++|.|++. +
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~--~L~-------------------------~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLME--GLA-------------------------GNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHH--HHH-------------------------TCSSCCEEECTTSSCHHHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHH--HHh-------------------------cCCCcCEEeCCCCCCCcHHHHHH
Confidence 34688999999999986311111100 000 113489999999999853 3
Q ss_pred CccccCCCcccEEeccCCcccCC----CCccccCCCCCCEEEccCCcCCCCCCc
Q 045177 163 PPYLGKMTTLKVLDLSFNKLSGH----IPSNFDDLYEVDYIYFTGNLLTGAIPP 212 (461)
Q Consensus 163 ~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~ 212 (461)
+..+...++|+.|+|++|.|++. ++..+...++|++|+|++|.|++....
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 55667788999999999999853 344555678999999999999854333
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.21 E-value=1.2e-10 Score=116.05 Aligned_cols=208 Identities=9% Similarity=0.006 Sum_probs=150.8
Q ss_pred cCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCch
Q 045177 6 RLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPS 85 (461)
Q Consensus 6 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 85 (461)
+++.+...+|.+. +|+.+.|.. .++...+..|.++++|+.++|+.|+++......|. ..+|+.+.|..+ ++.....
T Consensus 145 ~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~ 220 (401)
T 4fdw_A 145 GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQ 220 (401)
T ss_dssp TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTT
T ss_pred CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhh
Confidence 3666677788884 699999986 67756677899999999999999999955455565 689999999854 7767778
Q ss_pred hhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCcc-ccEEEcccCccc-----
Q 045177 86 FIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKK-MTNLILRNCNIT----- 159 (461)
Q Consensus 86 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~-L~~L~L~~n~l~----- 159 (461)
+|.++++|+.+.+..+ +...-...+.. .+|+. +.+.. +.....-..+..+. |+.+.+.+|.+.
T Consensus 221 aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~--------i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~ 289 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT--------VKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEA 289 (401)
T ss_dssp TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE--------EEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTC
T ss_pred HhhCCCCCCEEecCCC-ccCcccccccc-CCccE--------EEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCccc
Confidence 9999999999999875 44233333433 44444 22221 00000111244454 999999988765
Q ss_pred ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccCcccCC
Q 045177 160 GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYNNFTDG 231 (461)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N~l~~~ 231 (461)
......|.++++|+.++|. +.++.....+|.++.+|+.|.|..| ++..-...| + +|+.|++++|.+...
T Consensus 290 ~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 290 MIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp EECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred EECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 3566789999999999999 4577667788999999999999765 653444445 4 788999999877653
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=9.1e-11 Score=114.62 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=75.4
Q ss_pred cEEeeccc-cCCCCCchhhcCCCCCCEEEccC-CcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCCcEEEcc
Q 045177 22 VNLTVQYN-QFSGELPEELGSLLNLEKLHLSS-NNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKLEKLFIQ 99 (461)
Q Consensus 22 ~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 99 (461)
..++++++ .++ .+|. +..+++|++|+|++ |.|++..+..|.+|++|++|+|++|+|++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788988 898 6788 99999999999996 99997777899999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 045177 100 PSGLVG 105 (461)
Q Consensus 100 ~n~l~~ 105 (461)
+|++.+
T Consensus 89 ~N~l~~ 94 (347)
T 2ifg_A 89 FNALES 94 (347)
T ss_dssp SSCCSC
T ss_pred CCccce
Confidence 999984
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.2e-10 Score=114.13 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=99.0
Q ss_pred hhcCCCCcEEeeccccCC---------CCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCch
Q 045177 15 LANISTLVNLTVQYNQFS---------GELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPS 85 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 85 (461)
...+++|+.|.+..+... +.+...+..+++|+.|+|++|.-. .++. + .+++|+.|+|..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 445677777777554321 123444566677777777666311 1222 2 266777777776666533333
Q ss_pred hhc--cCCCCcEEEccCC--CCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCccccc
Q 045177 86 FIQ--NWTKLEKLFIQPS--GLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGE 161 (461)
Q Consensus 86 ~~~--~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 161 (461)
.+. .+++|++|+|+.+ ...+. ..+ ..+.. .+..-..++|++|+|++|.+.+.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~--~~~---~~l~~-------------------~l~~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFD--GDM---NVFRP-------------------LFSKDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCC--SCG---GGTGG-------------------GSCTTTCTTCCEEEEESCTTHHH
T ss_pred HHHHccCCCCcEEEEeccccccccc--hhH---HHHHH-------------------HHhcCCCCCcCEEeCCCCCCchH
Confidence 333 5677777776421 11100 000 00000 00001123488888888887643
Q ss_pred CCccc---cCCCcccEEeccCCcccCC----CCccccCCCCCCEEEccCCcCCCCCCccccccC-CccccccCc
Q 045177 162 LPPYL---GKMTTLKVLDLSFNKLSGH----IPSNFDDLYEVDYIYFTGNLLTGAIPPWMLEKG-DKIDLSYNN 227 (461)
Q Consensus 162 ~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l-~~LdLs~N~ 227 (461)
.+..+ ..+++|++|+|+.|.|++. ++..+..+++|+.|+|++|.|+...-..+...+ ..++++.++
T Consensus 268 ~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 33222 2467888888888888753 333344567888888888877643322232212 456666665
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=7.7e-09 Score=101.34 Aligned_cols=163 Identities=15% Similarity=0.177 Sum_probs=109.2
Q ss_pred CCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhh--CCCCcCEEEeeC--CcCCCC---
Q 045177 10 PIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFA--KLTNMKDFRIGD--NQFTGQ--- 82 (461)
Q Consensus 10 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~--N~l~~~--- 82 (461)
.+...+..+++|+.|+|++|.-. .++. +. +++|+.|+|..+.+.......+. .+|+|+.|+|+. |...+.
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 46677788999999999988311 2333 43 88999999999998744444454 799999999963 222111
Q ss_pred --Cchhh--ccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcc
Q 045177 83 --IPSFI--QNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNI 158 (461)
Q Consensus 83 --~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l 158 (461)
+...+ ..+++|++|+|.+|.+....+..+... + ..++|++|+|+.|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a--------------------------~--~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES--------------------------D--ILPQLETMDISAGVL 291 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC--------------------------S--SGGGCSEEECCSSCC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC--------------------------c--cCCCCCEEECCCCCC
Confidence 11223 357999999999998863222111110 0 113489999999999
Q ss_pred ccc----CCccccCCCcccEEeccCCcccCCCCccccC-CCCCCEEEccCCc
Q 045177 159 TGE----LPPYLGKMTTLKVLDLSFNKLSGHIPSNFDD-LYEVDYIYFTGNL 205 (461)
Q Consensus 159 ~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~N~ 205 (461)
++. ++..+..+++|+.|+|++|.|++..-..+.. + ...+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 864 3333456789999999999998544444433 2 3568898887
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=3.9e-08 Score=91.74 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=61.8
Q ss_pred hhcCCCCcE--EeeccccCC---CCCchhhcCCCCCCEEEccCCcCCC--CchhhhhCCCCcCEEEeeCCcCCCCCchhh
Q 045177 15 LANISTLVN--LTVQYNQFS---GELPEELGSLLNLEKLHLSSNNFTG--ELPKTFAKLTNMKDFRIGDNQFTGQIPSFI 87 (461)
Q Consensus 15 ~~~l~~L~~--L~Ls~n~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 87 (461)
|...+.|+. ++++.|... ..++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444455554 666777443 1222223567888888888888886 3446677888888888888888854 334
Q ss_pred ccCC--CCcEEEccCCCCccCCC
Q 045177 88 QNWT--KLEKLFIQPSGLVGPIP 108 (461)
Q Consensus 88 ~~l~--~L~~L~L~~n~l~~~~p 108 (461)
..+. +|++|+|++|.+.+.+|
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhcccCCcceEEccCCcCccccC
Confidence 4444 88888888888876665
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=6e-08 Score=85.70 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=74.9
Q ss_pred chhhhcCCCCcEEeeccc-cCCCC----CchhhcCCCCCCEEEccCCcCCCC----chhhhhCCCCcCEEEeeCCcCCCC
Q 045177 12 PKYLANISTLVNLTVQYN-QFSGE----LPEELGSLLNLEKLHLSSNNFTGE----LPKTFAKLTNMKDFRIGDNQFTGQ 82 (461)
Q Consensus 12 p~~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ 82 (461)
...+...+.|+.|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.++..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667899999999999 88742 445677789999999999999842 445667778999999999999853
Q ss_pred ----CchhhccCCCCcEEEc--cCCCCcc
Q 045177 83 ----IPSFIQNWTKLEKLFI--QPSGLVG 105 (461)
Q Consensus 83 ----~p~~~~~l~~L~~L~L--~~n~l~~ 105 (461)
+...+...++|++|+| ++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 4566777889999999 8888863
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=8.5e-08 Score=89.41 Aligned_cols=80 Identities=21% Similarity=0.391 Sum_probs=56.2
Q ss_pred hcCCCCcEEeeccccCCC--CCchhhcCCCCCCEEEccCCcCCCCchhhhhCCC--CcCEEEeeCCcCCCCCc-------
Q 045177 16 ANISTLVNLTVQYNQFSG--ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLT--NMKDFRIGDNQFTGQIP------- 84 (461)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p------- 84 (461)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457788888888888876 3445667788888888888888743 2233344 78888888888876554
Q ss_pred hhhccCCCCcEEE
Q 045177 85 SFIQNWTKLEKLF 97 (461)
Q Consensus 85 ~~~~~l~~L~~L~ 97 (461)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2466777777775
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=1.3e-07 Score=83.54 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=82.2
Q ss_pred CCCCC-cCCCC----CchhhhcCCCCcEEeeccccCCCC----CchhhcCCCCCCEEEccCCcCCCC----chhhhhCCC
Q 045177 1 SLLAN-RLTGP----IPKYLANISTLVNLTVQYNQFSGE----LPEELGSLLNLEKLHLSSNNFTGE----LPKTFAKLT 67 (461)
Q Consensus 1 ~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~ 67 (461)
+|++| +|... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|... +...+...+
T Consensus 42 ~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~ 121 (185)
T 1io0_A 42 NLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNT 121 (185)
T ss_dssp ECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCS
T ss_pred EecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCC
Confidence 46777 77643 345566779999999999999753 345566778999999999999843 456778889
Q ss_pred CcCEEEe--eCCcCCCC----CchhhccCCCCcEEEccCCCCc
Q 045177 68 NMKDFRI--GDNQFTGQ----IPSFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 68 ~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~n~l~ 104 (461)
+|++|+| ++|.++.. +...+...++|++|+|++|.+.
T Consensus 122 ~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 122 SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 9999999 88999854 3456667799999999999885
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.28 E-value=7.3e-06 Score=81.16 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=59.6
Q ss_pred CCcc-ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCc
Q 045177 144 GNKK-MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDK 220 (461)
Q Consensus 144 ~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~ 220 (461)
.... |+.+.+..+..+ .....|.++.+|+.+.+. +.++.....+|.++.+|+.+.|..+ ++..-...| +.+|+.
T Consensus 262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 3344 788887665443 555677788888888886 4455455667888888888888764 442333444 457788
Q ss_pred cccccCcccCCCCcccccccccc
Q 045177 221 IDLSYNNFTDGSAESSCQKRSVN 243 (461)
Q Consensus 221 LdLs~N~l~~~~p~~~c~~~~l~ 243 (461)
+.|..+ ++.....++.....|.
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCC
T ss_pred EEECcc-cCEEhHhHhhCCCCCC
Confidence 887544 5544344443333333
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=4.2e-06 Score=82.89 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=58.8
Q ss_pred CCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhcc
Q 045177 10 PIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQN 89 (461)
Q Consensus 10 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 89 (461)
+...+|.++++|+.+.+..+... .....|.++.+|+.+.+..+ ++......|.++..|+.+.+..+... +.+.+..
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~ 228 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS 228 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT
T ss_pred cchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc
Confidence 34568999999999999866433 55667889999999999877 55355567888888887777655432 2222333
Q ss_pred CCCCcEEEcc
Q 045177 90 WTKLEKLFIQ 99 (461)
Q Consensus 90 l~~L~~L~L~ 99 (461)
..+|+.+.+.
T Consensus 229 ~~~l~~i~ip 238 (394)
T 4fs7_A 229 KTGVKNIIIP 238 (394)
T ss_dssp TCCCCEEEEC
T ss_pred cCCCceEEEC
Confidence 4556666554
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=1.3e-05 Score=79.28 Aligned_cols=110 Identities=9% Similarity=-0.075 Sum_probs=67.9
Q ss_pred CCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCc--------
Q 045177 7 LTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQ-------- 78 (461)
Q Consensus 7 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------- 78 (461)
++.+-..+|.++++|+.+.|.. .++.+...+|.++++|+.++|..+ ++.+...+|.++++|+.+.+..+-
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 4445567888888899888874 366555667888888999888755 543444567777666665553321
Q ss_pred -------------CCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccc
Q 045177 79 -------------FTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNG 119 (461)
Q Consensus 79 -------------l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 119 (461)
+......+|.++++|+.+.+..+... .....+..+.+|+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKS 189 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCB
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceE
Confidence 11122346777788888888654322 23334444455544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=1.8e-06 Score=74.95 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=66.8
Q ss_pred CCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCc-CCCCchhhhhCC----CCcCEEEeeCCc-CCCCCchhhccCCC
Q 045177 19 STLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNN-FTGELPKTFAKL----TNMKDFRIGDNQ-FTGQIPSFIQNWTK 92 (461)
Q Consensus 19 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 92 (461)
-.|+.||++++.|+..--..+.++++|++|+|++|. |+..--..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999886655678899999999999995 774434456665 479999999985 77555567788999
Q ss_pred CcEEEccCCC
Q 045177 93 LEKLFIQPSG 102 (461)
Q Consensus 93 L~~L~L~~n~ 102 (461)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999886
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.01 E-value=4.4e-05 Score=75.52 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=58.5
Q ss_pred ccEEEcccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCcccccc
Q 045177 148 MTNLILRNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSY 225 (461)
Q Consensus 148 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~ 225 (461)
|+.+.+. +.++.....+|.++.+|+.++|..+ ++..-..+|.++.+|+.+.|..+ ++..-...| +.+|+.+++.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 8888886 4565566678889999999999765 55455778999999999999765 663334445 56788899888
Q ss_pred Cccc
Q 045177 226 NNFT 229 (461)
Q Consensus 226 N~l~ 229 (461)
+...
T Consensus 367 ~~~~ 370 (394)
T 4gt6_A 367 SRSQ 370 (394)
T ss_dssp CHHH
T ss_pred ceee
Confidence 7543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.52 E-value=0.00034 Score=68.55 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=106.4
Q ss_pred hhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcCCCCCchhhccCCCC
Q 045177 14 YLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQFTGQIPSFIQNWTKL 93 (461)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 93 (461)
.+.....+..+.+...... .....+....+|+.+.+..+ +.......|.++.+|+.+.+..+ ++.....+|.++.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 3445566666665544332 44556778888999988765 44355667888999999999765 555666788889999
Q ss_pred cEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEcccCcccccCCccccCCCccc
Q 045177 94 EKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLILRNCNITGELPPYLGKMTTLK 173 (461)
Q Consensus 94 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (461)
+.+.+..+ +.......+..+ .+|+.+.+.++.++.....+|.++.+|+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c-------------------------------~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGC-------------------------------SNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTC-------------------------------TTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cccccccc-ceeccccccccc-------------------------------cccccccccccccceehhhhhcCCCCCC
Confidence 99988543 221111111111 2267788887777766667888899999
Q ss_pred EEeccCCcccCCCCccccCCCCCCEEEccCCcCC
Q 045177 174 VLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 174 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 207 (461)
.+.|..+ ++..-..+|.++.+|+.+.+..+ ++
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~ 345 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT 345 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC
Confidence 9999755 65455678888899998888654 44
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.46 E-value=4.1e-05 Score=66.30 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=62.4
Q ss_pred CCCCCcCCCCCchhhhcCCCCcEEeecccc-CCCCCchhhcCC----CCCCEEEccCCc-CCCCchhhhhCCCCcCEEEe
Q 045177 1 SLLANRLTGPIPKYLANISTLVNLTVQYNQ-FSGELPEELGSL----LNLEKLHLSSNN-FTGELPKTFAKLTNMKDFRI 74 (461)
Q Consensus 1 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L 74 (461)
||+++.|+..--..+.++++|+.|+|++|. |++.--..+..+ ++|++|+|++|. |+..--..+..+++|++|+|
T Consensus 67 DLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L 146 (176)
T 3e4g_A 67 DATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFL 146 (176)
T ss_dssp EEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEE
T ss_pred eCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEEC
Confidence 466777776666678899999999999995 775544556665 379999999985 88544456788999999999
Q ss_pred eCCc-CC
Q 045177 75 GDNQ-FT 80 (461)
Q Consensus 75 s~N~-l~ 80 (461)
+++. ++
T Consensus 147 ~~c~~It 153 (176)
T 3e4g_A 147 SDLPGVK 153 (176)
T ss_dssp ESCTTCC
T ss_pred CCCCCCC
Confidence 9986 44
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.41 E-value=0.00068 Score=66.35 Aligned_cols=185 Identities=11% Similarity=0.001 Sum_probs=124.3
Q ss_pred cCCCCCchhhhcCCCCcEEeeccccCCC------------CCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEE
Q 045177 6 RLTGPIPKYLANISTLVNLTVQYNQFSG------------ELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFR 73 (461)
Q Consensus 6 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 73 (461)
.++.+...+|..+..++.+.+..+.... .....+.....+..+.+...... .....+....+|+.+.
T Consensus 145 ~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~ 223 (379)
T 4h09_A 145 SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKIT 223 (379)
T ss_dssp TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEE
T ss_pred eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeecccccccccceee
Confidence 4555566788889999998887654321 12233455667777776655433 4566788889999999
Q ss_pred eeCCcCCCCCchhhccCCCCcEEEccCCCCccCCCCcccccccccccccceeeeecccCCCCCCCCCcccCCccccEEEc
Q 045177 74 IGDNQFTGQIPSFIQNWTKLEKLFIQPSGLVGPIPSGIFSLEKFNGLVCMVFLFLRISDLNGPEATFPQLGNKKMTNLIL 153 (461)
Q Consensus 74 Ls~N~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~~l~~~~l~~~~l~~~~~~~~~l~~~~L~~L~L 153 (461)
+..+ +.......|.++.+|+.+.+..+ ++..-...+... ..|+.+.+
T Consensus 224 ~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~-------------------------------~~l~~i~l 270 (379)
T 4h09_A 224 ITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNC-------------------------------TALKTLNF 270 (379)
T ss_dssp CCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTC-------------------------------TTCCEEEE
T ss_pred eccc-eeEEccccccCCccceEEEcCCC-ccEeCcccccee-------------------------------ehhccccc
Confidence 9765 44456678899999999988654 321111111111 12555666
Q ss_pred ccCcccccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCCCCCCccc--cccCCccccccC
Q 045177 154 RNCNITGELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLTGAIPPWM--LEKGDKIDLSYN 226 (461)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~~l~~LdLs~N 226 (461)
..+ ++......|..+.+|+.+.+.++.++.....+|.++.+|+.+.|..+ ++..-...| +.+|+.+.+..+
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 443 44355567889999999999999988666789999999999999765 552333445 467888877544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.15 E-value=0.0004 Score=61.18 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=63.3
Q ss_pred hhcCCCCcEEeeccc-cCCC----CCchhhcCCCCCCEEEccCCcCCC----CchhhhhCCCCcCEEEeeCCcCCCC---
Q 045177 15 LANISTLVNLTVQYN-QFSG----ELPEELGSLLNLEKLHLSSNNFTG----ELPKTFAKLTNMKDFRIGDNQFTGQ--- 82 (461)
Q Consensus 15 ~~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~--- 82 (461)
+.+-+.|+.|+|++| .|.. .+.+.+..-+.|+.|+|++|.|.. .+.+.+..-+.|++|+|++|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578889999885 7753 234566777889999999998873 3555666778899999999998743
Q ss_pred -CchhhccCCCCcEEEccCCC
Q 045177 83 -IPSFIQNWTKLEKLFIQPSG 102 (461)
Q Consensus 83 -~p~~~~~l~~L~~L~L~~n~ 102 (461)
+...+..-+.|++|+|++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 33445556778888887653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.07 E-value=0.00025 Score=62.51 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=75.7
Q ss_pred CCCC-cCCCC----CchhhhcCCCCcEEeeccccCCCC----CchhhcCCCCCCEEEccCCcCCCC----chhhhhCCCC
Q 045177 2 LLAN-RLTGP----IPKYLANISTLVNLTVQYNQFSGE----LPEELGSLLNLEKLHLSSNNFTGE----LPKTFAKLTN 68 (461)
Q Consensus 2 Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~ 68 (461)
|++| +|... +-.++..-+.|+.|+|++|.|.+. +.+.+..-+.|++|+|++|.|... +.+.+..-+.
T Consensus 48 L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~t 127 (197)
T 1pgv_A 48 INNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQS 127 (197)
T ss_dssp CTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCc
Confidence 4553 55432 345667778999999999999743 445566778999999999999843 4455667788
Q ss_pred cCEEEeeCCc---CCC----CCchhhccCCCCcEEEccCCCCc
Q 045177 69 MKDFRIGDNQ---FTG----QIPSFIQNWTKLEKLFIQPSGLV 104 (461)
Q Consensus 69 L~~L~Ls~N~---l~~----~~p~~~~~l~~L~~L~L~~n~l~ 104 (461)
|++|+|++|. +.. .+...+..-+.|+.|+++.|.+.
T Consensus 128 L~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 128 IVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred eeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 9999998763 342 24456677789999999887654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.61 E-value=0.0037 Score=51.18 Aligned_cols=57 Identities=21% Similarity=0.142 Sum_probs=41.1
Q ss_pred cEEEcccCccc-ccCCccccCCCcccEEeccCCcccCCCCccccCCCCCCEEEccCCcCC
Q 045177 149 TNLILRNCNIT-GELPPYLGKMTTLKVLDLSFNKLSGHIPSNFDDLYEVDYIYFTGNLLT 207 (461)
Q Consensus 149 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 207 (461)
..++.++++++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35777777776 2455432 246888888888888666667788888888888888776
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.003 Score=51.71 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=17.8
Q ss_pred CCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCCcC
Q 045177 44 NLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDNQF 79 (461)
Q Consensus 44 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 79 (461)
+|++|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555543344444555555555555544
No 166
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=93.43 E-value=0.39 Score=46.62 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=51.5
Q ss_pred ccccccccCccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEE
Q 045177 355 TYYGFCLGNGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRL 434 (461)
Q Consensus 355 ~~~~~~~~~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f 434 (461)
.++.+.||+|+|.|++.+.+- ..=.|..++...+. ..+|.. ..+.|.|.+.||.+++++
T Consensus 78 ~~f~v~~~~g~Y~v~v~~g~~-------------~~~~v~~e~~~~~~-----~~~g~~---~~~~~~v~~~~g~~~l~~ 136 (375)
T 2o14_A 78 NTFNVDLPNGLYEVKVTLGNT-------------ARASVAAEGVFQVI-----NMTGDG---AEDTFQIPVTDGQLNLLV 136 (375)
T ss_dssp CCEEEECCSEEEEEEEEESSC-------------SEEEEEETTEEEEE-----EEESTT---CEEEEEEEECSSEEEEEE
T ss_pred eEEEEEcCCCceEEEEEecCC-------------cceEEEEcceEEEE-----ecCCCc---EEEEEEEEeeCCeEEEee
Confidence 456789999999999988654 11345667765444 333222 345788999999999998
Q ss_pred EEcCCcceeccCCCcccCeeeeEEecC
Q 045177 435 YWAGKGTTEIPFKGDYGPLISAISLNP 461 (461)
Q Consensus 435 ~~~~~g~~~~p~~~~~~~~i~ai~v~~ 461 (461)
.-... |. .|.+++|+|.|
T Consensus 137 ~~~~~--------g~-~~~l~~i~v~~ 154 (375)
T 2o14_A 137 TEGKA--------GT-AFTLSALKIKK 154 (375)
T ss_dssp EESST--------TS-CCEEEEEEEEE
T ss_pred eeccC--------CC-CcccceEEEec
Confidence 72111 21 27899999863
No 167
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=91.58 E-value=1.7 Score=35.83 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=51.1
Q ss_pred cccccc-CccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEEE
Q 045177 357 YGFCLG-NGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLY 435 (461)
Q Consensus 357 ~~~~~~-~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~ 435 (461)
|.+.++ .|.|.|++.++- ...+.|.++|+|||..+ ..+.+... |+...--.....|..+.|.=+|+|.
T Consensus 43 ~~V~v~~aG~Y~l~~ryan---------g~~~~r~~~l~VNG~~~-~~v~~p~T-g~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 43 WSLSAASAKTYTAQIRFGN---------GGTSARRATVVVNDSQI-KTLDFPTN-SNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp EEEEESSCEEEEEEEEEEC---------CSSSCCCEEEEETTEEE-EEECCCCC-SCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred EEEECCCCeEEEEEEEEEC---------CCCCCeEEEEEECCeEe-eEEEecCC-CCCCeeEEEEEEEEECCCceEEEEE
Confidence 345555 699999999972 12257899999999876 44554333 2432222223355556676566665
Q ss_pred EcCCcceeccCCCcccCeeeeEEecC
Q 045177 436 WAGKGTTEIPFKGDYGPLISAISLNP 461 (461)
Q Consensus 436 ~~~~g~~~~p~~~~~~~~i~ai~v~~ 461 (461)
-.+ +..+|-|--|+|.|
T Consensus 112 ~~~---------~~g~~niD~i~v~~ 128 (145)
T 2w3j_A 112 AET---------ADGLANIDSIRVTG 128 (145)
T ss_dssp ECS---------TTCCCEEEEEEECS
T ss_pred Eec---------CcCCEEEEEEEEEc
Confidence 221 11147788888764
No 168
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=91.01 E-value=2 Score=34.31 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=51.2
Q ss_pred cccccc-CccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEEE
Q 045177 357 YGFCLG-NGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLY 435 (461)
Q Consensus 357 ~~~~~~-~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~ 435 (461)
|.+.++ .|.|.|+++++--. .+.|.++|+|||..+...+.+... |+...--.....|..+.|.=+|+|.
T Consensus 43 ~~V~v~~aG~Y~l~~rya~~~---------~~~~~~~l~VnG~~~~~~v~~p~t-g~W~~w~~~~~~v~L~aG~ntI~l~ 112 (127)
T 2vzp_A 43 WTVTVPSAGTYDVVVRYANGT---------TTSRPLDFSVNGSISASGVAFGST-GTWPAWTTKTVRVTLAAGVNKIKAV 112 (127)
T ss_dssp EEEEESSSEEEEEEEEEECCS---------SSCCCEEEEETTEEEEEEECCCCC-SSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEEEEcCC---------CCCeEEEEEECCEEeeeEEEecCC-CCCCceEEEEEEEEECCCceEEEEE
Confidence 345565 69999999987631 257889999999986544554332 2433222233455666777666665
Q ss_pred EcCCcceeccCCCcccCeeeeEEe
Q 045177 436 WAGKGTTEIPFKGDYGPLISAISL 459 (461)
Q Consensus 436 ~~~~g~~~~p~~~~~~~~i~ai~v 459 (461)
-.+ +.++|-|--|+|
T Consensus 113 ~~~---------~~~~~niD~i~v 127 (127)
T 2vzp_A 113 ATT---------ANGGPNVDKITL 127 (127)
T ss_dssp ECS---------TTCCCEEEEEEC
T ss_pred EeC---------CCCCeEEEEEEC
Confidence 211 223577877765
No 169
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=90.57 E-value=1.4 Score=36.85 Aligned_cols=93 Identities=19% Similarity=0.327 Sum_probs=55.2
Q ss_pred cccc-CccEEEEEEeEeeeecCCCCc-cCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEEEE
Q 045177 359 FCLG-NGNYTVKLHFAEILFTDDKNF-SSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLYW 436 (461)
Q Consensus 359 ~~~~-~G~y~v~L~F~e~~~~~~~~~-~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~~ 436 (461)
+.++ .|.|.|+++|+.-.......+ .....|..+|+|||... ..++... .|+....-.....|....|.=+|+|.-
T Consensus 54 V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~-~~v~fp~-Tg~W~~~~~~tv~V~L~aG~NtI~~~~ 131 (156)
T 2wz8_A 54 VYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPE-KGHYFFN-TRGWNTYRTDIIDVYLNAGNNTIRFYN 131 (156)
T ss_dssp EEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCC-EEEEECC-CSSTTCCEEEEEEEEECSEEEEEEEEC
T ss_pred EecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCcee-eEEEeCC-CCCCCcceEEEEEEEECCCceEEEEEe
Confidence 4454 699999999986421100000 12248999999999762 2333322 234444333444666677888888872
Q ss_pred cCCcceeccCCCcccCeeeeEEecC
Q 045177 437 AGKGTTEIPFKGDYGPLISAISLNP 461 (461)
Q Consensus 437 ~~~g~~~~p~~~~~~~~i~ai~v~~ 461 (461)
.. .+.|+|-|=.|+|.|
T Consensus 132 ~~--------~~~~~pdiD~i~v~~ 148 (156)
T 2wz8_A 132 GT--------SGSYAPNIDKIAIAA 148 (156)
T ss_dssp CS--------TTCBCCEEEEEEEEC
T ss_pred cC--------CCCCCcEEEEEEEec
Confidence 10 123679999998875
No 170
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=90.19 E-value=2.3 Score=34.85 Aligned_cols=86 Identities=17% Similarity=0.297 Sum_probs=52.0
Q ss_pred cccccc-CccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEEE
Q 045177 357 YGFCLG-NGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLY 435 (461)
Q Consensus 357 ~~~~~~-~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~ 435 (461)
|.+.++ .|.|.|++.++-- ..+.|.++|+|||..+...+.+... |+...--.....|..+.|.=+|+|.
T Consensus 44 ~~V~v~~aG~Y~l~~ryan~---------~~~~~~~~l~VNG~~~~~~v~~p~T-g~w~~w~~~~~~v~L~aG~ntI~l~ 113 (144)
T 2w47_A 44 WNVNAPSSGSYALIFRYANG---------TTANRPMRITVNGNIVKPSMDFVST-GAWTTWNEAGIVANLNQGNNVIRAT 113 (144)
T ss_dssp EEEEESSSEEEEEEEEEECC---------SSSCCCEEEEETTEEEEEEECCCCC-SSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred EEEECCCCcEEEEEEEEECC---------CCCCeEEEEEECCeEeeeEEEecCC-CCCCeeEEEEEEEEECCCccEEEEE
Confidence 345565 6999999999842 2257899999999876555555433 2333222233345556666556555
Q ss_pred EcCCcceeccCCCcccCeeeeEEecC
Q 045177 436 WAGKGTTEIPFKGDYGPLISAISLNP 461 (461)
Q Consensus 436 ~~~~g~~~~p~~~~~~~~i~ai~v~~ 461 (461)
-.+. .| +|.|--|+|.|
T Consensus 114 ~~~~-------~g--~~niD~i~v~~ 130 (144)
T 2w47_A 114 AIAS-------DG--GPNVDYLKVFS 130 (144)
T ss_dssp ECST-------TC--CCEEEEEEEEE
T ss_pred EeCC-------CC--CEEEeEEEEEe
Confidence 2110 12 47788888764
No 171
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=88.31 E-value=2 Score=35.03 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=50.6
Q ss_pred ccccc-CccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEE-eecCccccccCCcceEEEEEEEEEEeCCeEEEEEE
Q 045177 358 GFCLG-NGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLV-LKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLY 435 (461)
Q Consensus 358 ~~~~~-~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~-~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~ 435 (461)
.+.++ .|.|.|++.++-- ..+.|..+|+|||..+ ...+.+... |+...--.....|..+.|.=+|+|.
T Consensus 44 ~V~v~~aG~Y~l~~ryang---------~~~~r~~~l~VNG~~~g~~~v~~p~T-g~W~~w~t~~~~v~L~aG~ntI~l~ 113 (139)
T 2w87_A 44 AIDATSSGRRTLTIRYANG---------GTANRNGSLVINGGSNGNYTVSLPTT-GAWTTWQTATIDVDLVQGNNIVQLS 113 (139)
T ss_dssp EEEESSCEEEEEEEEEECC---------SSSCCCEEEEETTTTTCEEEECCCCC-SSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred EEECCCCcEEEEEEEEECC---------CCCCceEEEEECCEEcceeEEEecCC-CCCCccEEEEEEEEECCCceEEEEE
Confidence 45555 6999999998642 1136889999999765 344454433 3433222233455556666556665
Q ss_pred EcCCcceeccCCCcccCeeeeEEecC
Q 045177 436 WAGKGTTEIPFKGDYGPLISAISLNP 461 (461)
Q Consensus 436 ~~~~g~~~~p~~~~~~~~i~ai~v~~ 461 (461)
-.+ +..+|-|--|+|.|
T Consensus 114 ~~~---------~~g~~niD~i~v~~ 130 (139)
T 2w87_A 114 ATT---------AEGLPNIDSLSVVG 130 (139)
T ss_dssp ESS---------TTCCCEEEEEEEES
T ss_pred EcC---------CCCCEEEEEEEEec
Confidence 221 11258888888864
No 172
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=62.19 E-value=56 Score=26.92 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=49.2
Q ss_pred cccccc-CccEEEEEEeEeeeecCCCCccCCCcceeEEEECCE---EEeecCccccccCCcceEEEEEE-EEEEeCCeEE
Q 045177 357 YGFCLG-NGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGN---LVLKDLNIENEAGGVGKAIVKPF-SAAVTNGTME 431 (461)
Q Consensus 357 ~~~~~~-~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~---~~~~~fdi~~~~~~~~~~~~~~~-~v~v~~~~l~ 431 (461)
|.+.++ .|.|.|.+..|-.. +.+.+.|+++|. .++....+.. . |...-...+- .|..+.|+=+
T Consensus 71 y~V~v~~aG~Y~i~~rvas~~----------~g~~i~l~vdg~~~~~~~g~~~vp~-t-GW~~w~t~t~~~v~L~aG~ht 138 (160)
T 2cdp_A 71 YTIAVAQAGNYTISYQAGSGV----------TGGSIEFLVNENGSWASKTVTAVPN-Q-GWDNFQPLNGGSVYLSAGTHQ 138 (160)
T ss_dssp EEEEESSCEEEEEEEEEEBSS----------SSCEEEEEEECSSSEEEEEEEECCB-S-CTTCCEEEEEEEEEECSEEEE
T ss_pred EEEEcCCCcEEEEEEEEEcCC----------CCceEEEEECCCCCceeeeEEEcCC-C-CCceeEEeeeeEEEeCCCeEE
Confidence 466665 79999999987542 235688899885 4444444332 2 3333222222 4555667756
Q ss_pred EEEEEcCCcceeccCCCcccCeeeeEEecC
Q 045177 432 IRLYWAGKGTTEIPFKGDYGPLISAISLNP 461 (461)
Q Consensus 432 i~f~~~~~g~~~~p~~~~~~~~i~ai~v~~ 461 (461)
|++...|.. .++..|.-|++.|
T Consensus 139 L~l~~~g~~--------~~~~Nld~~~f~p 160 (160)
T 2cdp_A 139 VRLHGAGSN--------NWQWNLDKFTLSN 160 (160)
T ss_dssp EEEEECSSS--------SBCCEEEEEEEEC
T ss_pred EEEEEECCC--------CCcEEEEEEEEEC
Confidence 665533321 1245688888876
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.69 E-value=15 Score=27.88 Aligned_cols=46 Identities=24% Similarity=0.198 Sum_probs=23.4
Q ss_pred cCCCCCchhhhcCCCCcEEeeccccCCCCCchhhcCCCCCCEEEccC
Q 045177 6 RLTGPIPKYLANISTLVNLTVQYNQFSGELPEELGSLLNLEKLHLSS 52 (461)
Q Consensus 6 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 52 (461)
.++.+-..+|.+++.|+.+.|..+ ++.+-..+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444445555555566665555543 2323334555555555555543
No 174
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.93 E-value=23 Score=26.68 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=30.3
Q ss_pred cCCCCCchhhcCCCCCCEEEccCCcCCCCchhhhhCCCCcCEEEeeCC
Q 045177 30 QFSGELPEELGSLLNLEKLHLSSNNFTGELPKTFAKLTNMKDFRIGDN 77 (461)
Q Consensus 30 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 77 (461)
.++.+-...|.++.+|+.+.|..+ ++.+-..+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444444556777777777777765 33355566777777777777543
No 175
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=35.63 E-value=1.7e+02 Score=23.48 Aligned_cols=80 Identities=13% Similarity=0.313 Sum_probs=46.9
Q ss_pred cccccc-CccEEEEEEeEeeeecCCCCccCCCcceeEEEECCEEEeecCccccccCCcceEEEEEEEEEEeCCeEEEEEE
Q 045177 357 YGFCLG-NGNYTVKLHFAEILFTDDKNFSSFGKRIFDVYIQGNLVLKDLNIENEAGGVGKAIVKPFSAAVTNGTMEIRLY 435 (461)
Q Consensus 357 ~~~~~~-~G~y~v~L~F~e~~~~~~~~~~~~~~r~F~v~~~~~~~~~~fdi~~~~~~~~~~~~~~~~v~v~~~~l~i~f~ 435 (461)
+.+.|| .|.|.+.+-++..+ |..+=.++|||. ..++-..... . ...+. . .|.-+.|+=+|.|.
T Consensus 40 f~VdVP~tG~YdLsI~Ya~~~----------G~k~n~L~VNG~--~~~V~fP~tt-~-~~~~~-~-~V~L~aG~NtI~i~ 103 (140)
T 2bgo_A 40 WNVDVPVTGEYRINLTWSSPY----------SSKVNTLVMDGT--ALSYAFAEAT-V-PVTYV-Q-TKTLSAGNHSFGVR 103 (140)
T ss_dssp EEECCCSSEEEEEEEEECCCS----------SEEEEEEEETTE--EEEEEEESCC-S-CEEEE-E-EEEECSSCEEEEEE
T ss_pred EEEecCCCcEEEEEEEeccCC----------CCceEEEEECCc--eeEEEECCcC-C-cEEEE-E-EEEecCCccEEEEE
Confidence 456676 69999999887653 345558999997 3333322211 1 12222 2 25557788777777
Q ss_pred EcCCcceeccCCCccc-CeeeeEEecC
Q 045177 436 WAGKGTTEIPFKGDYG-PLISAISLNP 461 (461)
Q Consensus 436 ~~~~g~~~~p~~~~~~-~~i~ai~v~~ 461 (461)
.+ .|.+| .+|-+|+|.|
T Consensus 104 -~~--------~g~WG~~~iD~I~l~~ 121 (140)
T 2bgo_A 104 -VG--------SSDWGYMNVHSLKLEL 121 (140)
T ss_dssp -CC--------SSSCCCCEEEEEEEEE
T ss_pred -ec--------CCCceeEEEEEEEEEc
Confidence 11 12233 6788888764
No 176
>3jvf_C Interleukin-17 receptor A; cytokine, cysteine-knot growth factor, receptor complex, disulfide bond, glycoprotein, secreted, membrane, transmembrane; HET: MLY NAG; 3.30A {Homo sapiens}
Probab=25.57 E-value=59 Score=29.24 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCCccccccccccCc-cEEEEEEeEeeee
Q 045177 350 SAISLTYYGFCLGNG-NYTVKLHFAEILF 377 (461)
Q Consensus 350 ~~~~~~~~~~~~~~G-~y~v~L~F~e~~~ 377 (461)
-|. +.|.+|+|+|| .|.|..|--+-..
T Consensus 110 kW~-Fsf~~F~VePgq~Y~VtvhnlPk~~ 137 (286)
T 3jvf_C 110 RWR-FTFSHFVVDPDQEYEVTVHHLPKPI 137 (286)
T ss_dssp CCE-EEEEEEECCTTCEEEEEEEEESCCC
T ss_pred ceE-EEeeceEeCCCceEEEEEecCCCCC
Confidence 344 35668999998 5999999887644
No 177
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*
Probab=21.45 E-value=2.4e+02 Score=22.78 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=12.1
Q ss_pred EEEeCCeEEEEEEEcC
Q 045177 423 AAVTNGTMEIRLYWAG 438 (461)
Q Consensus 423 v~v~~~~l~i~f~~~~ 438 (461)
+.|++|+++|.|.-.+
T Consensus 120 i~v~~G~~~Ig~~~~~ 135 (152)
T 2xom_A 120 IKVETGRIKITVSVEG 135 (152)
T ss_dssp EEECSSEEEEEEEEEE
T ss_pred EEEeCCeEEEEEEEEc
Confidence 4467899999998443
No 178
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=20.91 E-value=43 Score=26.87 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=21.0
Q ss_pred hccCCCccccccccccCccEEEEEEeE
Q 045177 347 ARLSAISLTYYGFCLGNGNYTVKLHFA 373 (461)
Q Consensus 347 ~r~~~~~~~~~~~~~~~G~y~v~L~F~ 373 (461)
.++.|......+-++++|.|.+++...
T Consensus 66 ~~~~WDg~d~~G~~~~~G~Y~~~v~a~ 92 (138)
T 3c12_A 66 VSFAWDGTDANGNRMAAGKYGITATQT 92 (138)
T ss_dssp EEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred EEEEECCcCCCCCCCCCceEEEEEEEE
Confidence 466777666667889999999998754
Done!