BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045180
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PFY|A Chain A, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|B Chain B, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|C Chain C, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
pdb|2PFY|D Chain D, Crystal Structure Of Dctp7, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
Length = 301
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66
PQ ++D+ L A V++ + +YVKYY+D A++ +S +
Sbjct: 169 PQAFSTGVIDAX-LTSPATGVDSQAWDYVKYYYDAQAFIPQSFV 211
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 121 SVWDVIREILPDSQNGSRVLITLSRIEIVASFQFENGENIGLDFLSTGGPLRV 173
S D+ E L N R L+++S E + F E EN+G + LSTGG ++
Sbjct: 9 SGVDLGTENLYFQSNAXRALLSVSDKEGIVEFGKEL-ENLGFEILSTGGTFKL 60
>pdb|3VUV|A Chain A, Crystal Structure Of The Merozoite Surface Protein Mspdbl2
From P. Falciparum Bound To Zinc
Length = 339
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 60 WVEESLLYDADQILYDIIKFVMPSSRL 86
W E+S+ Y+ D+I Y IK + PS L
Sbjct: 290 WTEQSIKYNNDKINYTDIKTLSPSEYL 316
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 172 RVTYQGWPFHILYHESISLKENIEEALDEPRGLQVLAYC 210
+V Y GWP H + + SL+ + + P + V+ +C
Sbjct: 188 QVQYTGWPDHGIPQSATSLEALLTNVKNSPTTVPVVVHC 226
>pdb|3VUU|A Chain A, Crystal Structure Of The Merozoite Surface Protein Mspdbl2
From P. Falciparum
Length = 305
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 60 WVEESLLYDADQILYDIIKFVMPSSRL 86
W E+S+ Y+ D+I Y IK + PS L
Sbjct: 256 WTEQSIKYNNDKINYTDIKTLSPSEYL 282
>pdb|2X92|A Chain A, Crystal Structure Of Ance-Ramiprilat Complex
pdb|2X93|A Chain A, Crystal Structure Of Ance-Trandolaprilat Complex
pdb|2X94|A Chain A, Crystal Structure Of Ance-Perindoprilat Complex
pdb|2X95|A Chain A, Crystal Structure Of Ance-Lisinopril-Tryptophan Analogue,
Lisw-S Complex
Length = 599
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 188 ISLKENIEEALDEPRGLQVLAYCMLTFYLKLCCLYLSVFPVHFEISTK 235
++L IEE + + R + LAY FY K S F + E++TK
Sbjct: 127 LALDPEIEEVISKSRDHEELAYYWREFYDKAGTAVRSQFERYVELNTK 174
>pdb|2X8Y|A Chain A, Crystal Structure Of Ance
pdb|2X8Z|A Chain A, Crystal Structure Of Ance-Captopril Complex
pdb|2X90|A Chain A, Crystal Structure Of Ance-Enalaprilat Complex
pdb|2X91|A Chain A, Crystal Structure Of Ance-Lisinopril Complex
pdb|2X96|A Chain A, Crystal Structure Of Ance-Rxpa380 Complex
pdb|2X97|A Chain A, Crystal Structure Of Ance-Rxp407 Complex
pdb|2XHM|A Chain A, Crystal Structure Of Ance-K26 Complex
pdb|3ZQZ|A Chain A, Crystal Structure Of Ance In Complex With A Selenium
Analogue Of Captopril
pdb|4AA1|A Chain A, Crystal Structure Of Ance In Complex With Angiotensin-Ii
pdb|4AA2|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
Potentiating Peptide B
pdb|4ASQ|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
pdb|4ASR|A Chain A, Crystal Structure Of Ance In Complex With Thr6-Bradykinin
Length = 598
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 188 ISLKENIEEALDEPRGLQVLAYCMLTFYLKLCCLYLSVFPVHFEISTK 235
++L IEE + + R + LAY FY K S F + E++TK
Sbjct: 127 LALDPEIEEVISKSRDHEELAYYWREFYDKAGTAVRSQFERYVELNTK 174
>pdb|1J36|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J36|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J37|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J37|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J38|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J38|B Chain B, Crystal Structure Of Drosophila Ance
Length = 607
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 188 ISLKENIEEALDEPRGLQVLAYCMLTFYLKLCCLYLSVFPVHFEISTK 235
++L IEE + + R + LAY FY K S F + E++TK
Sbjct: 130 LALDPEIEEVISKSRDHEELAYYWREFYDKAGTAVRSQFERYVELNTK 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,011,958
Number of Sequences: 62578
Number of extensions: 265284
Number of successful extensions: 473
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 9
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)