Query 045180
Match_columns 243
No_of_seqs 237 out of 1662
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.1E-47 6.7E-52 353.9 20.0 235 5-243 161-439 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.1E-45 4.6E-50 307.1 17.6 235 7-243 1-278 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.7E-32 5.8E-37 264.0 19.0 224 2-234 184-456 (1153)
4 PRK00411 cdc6 cell division co 99.5 5.9E-12 1.3E-16 109.9 19.3 115 2-120 30-150 (394)
5 PRK04841 transcriptional regul 99.3 9.3E-11 2E-15 112.5 17.1 211 4-227 16-278 (903)
6 TIGR02928 orc1/cdc6 family rep 99.3 5E-10 1.1E-14 96.8 19.6 114 2-120 15-141 (365)
7 PF01637 Arch_ATPase: Archaeal 99.2 9.7E-11 2.1E-15 94.4 9.1 59 4-66 1-59 (234)
8 TIGR03015 pepcterm_ATPase puta 99.1 4.5E-09 9.8E-14 86.9 15.5 154 24-185 42-238 (269)
9 PF13401 AAA_22: AAA domain; P 99.1 2.2E-10 4.8E-15 84.2 6.8 114 24-145 3-125 (131)
10 COG2909 MalT ATP-dependent tra 99.1 7.1E-09 1.5E-13 95.0 15.4 211 12-228 25-285 (894)
11 PF05729 NACHT: NACHT domain 99.0 8.8E-10 1.9E-14 84.1 7.2 113 26-148 1-132 (166)
12 cd00009 AAA The AAA+ (ATPases 99.0 6.3E-09 1.4E-13 77.2 11.2 123 5-147 1-131 (151)
13 TIGR00635 ruvB Holliday juncti 99.0 2.5E-09 5.4E-14 90.2 8.4 46 2-47 4-52 (305)
14 PRK00080 ruvB Holliday junctio 98.9 3.3E-08 7.1E-13 84.3 13.2 46 2-47 25-73 (328)
15 PF13191 AAA_16: AAA ATPase do 98.9 4.7E-09 1E-13 81.7 6.8 50 3-54 1-51 (185)
16 PF13173 AAA_14: AAA domain 98.9 7.2E-09 1.6E-13 76.2 7.1 101 25-149 2-102 (128)
17 PTZ00202 tuzin; Provisional 98.9 4.4E-08 9.6E-13 84.7 12.2 129 2-146 262-401 (550)
18 COG1474 CDC6 Cdc6-related prot 98.8 3.1E-07 6.8E-12 79.1 17.4 113 2-120 17-135 (366)
19 COG3903 Predicted ATPase [Gene 98.8 3.5E-09 7.7E-14 90.0 3.8 200 24-233 13-258 (414)
20 cd01128 rho_factor Transcripti 98.7 2.5E-08 5.5E-13 81.3 6.8 92 24-119 15-114 (249)
21 PF05621 TniB: Bacterial TniB 98.7 8.3E-07 1.8E-11 73.5 13.8 172 9-185 44-261 (302)
22 PTZ00112 origin recognition co 98.6 4.1E-07 8.9E-12 84.6 12.5 116 2-120 755-881 (1164)
23 PRK12402 replication factor C 98.6 3.4E-07 7.4E-12 78.2 10.2 44 2-47 15-58 (337)
24 PRK13342 recombination factor 98.6 4.2E-07 9.1E-12 79.9 10.3 44 2-47 12-58 (413)
25 COG2256 MGS1 ATPase related to 98.6 1E-06 2.2E-11 75.0 11.8 102 15-149 40-144 (436)
26 PRK09376 rho transcription ter 98.5 1E-07 2.3E-12 81.6 5.3 92 24-118 168-266 (416)
27 PRK07003 DNA polymerase III su 98.5 8.4E-07 1.8E-11 81.7 11.4 134 3-146 17-159 (830)
28 PRK12323 DNA polymerase III su 98.5 2E-06 4.2E-11 78.3 13.6 44 3-47 17-60 (700)
29 PRK05564 DNA polymerase III su 98.5 2.3E-06 5E-11 72.5 12.7 124 2-147 4-134 (313)
30 PRK14961 DNA polymerase III su 98.5 2.5E-06 5.5E-11 73.7 12.3 45 2-47 16-60 (363)
31 KOG2543 Origin recognition com 98.5 1E-06 2.2E-11 74.4 9.2 114 1-121 5-128 (438)
32 PF05496 RuvB_N: Holliday junc 98.5 1.8E-06 3.9E-11 68.6 10.0 52 2-55 24-78 (233)
33 TIGR00767 rho transcription te 98.5 7.9E-07 1.7E-11 76.5 8.4 93 24-119 167-266 (415)
34 PRK14960 DNA polymerase III su 98.4 2.1E-06 4.6E-11 78.2 11.4 134 3-146 16-158 (702)
35 PLN03025 replication factor C 98.4 2.2E-06 4.7E-11 72.9 10.4 43 3-47 14-56 (319)
36 PRK06893 DNA replication initi 98.4 5.8E-07 1.3E-11 72.7 6.6 37 25-63 39-75 (229)
37 PRK14949 DNA polymerase III su 98.4 2.5E-06 5.5E-11 80.0 11.4 45 2-47 16-60 (944)
38 PHA02544 44 clamp loader, smal 98.4 2.3E-06 5E-11 72.5 10.4 115 3-146 22-141 (316)
39 PRK04195 replication factor C 98.4 2.4E-06 5.1E-11 76.7 10.8 46 3-48 15-62 (482)
40 PRK00440 rfc replication facto 98.4 5.9E-06 1.3E-10 70.0 12.5 43 3-47 18-60 (319)
41 TIGR03420 DnaA_homol_Hda DnaA 98.4 1E-06 2.2E-11 71.0 7.3 53 7-63 22-74 (226)
42 PRK08691 DNA polymerase III su 98.4 4.1E-06 9E-11 76.8 11.7 44 3-47 17-60 (709)
43 PRK14957 DNA polymerase III su 98.4 4.7E-06 1E-10 75.1 11.9 44 3-47 17-60 (546)
44 PRK11331 5-methylcytosine-spec 98.4 2.1E-06 4.6E-11 75.1 9.2 107 3-120 176-284 (459)
45 TIGR01242 26Sp45 26S proteasom 98.4 5.4E-07 1.2E-11 77.9 5.4 51 3-55 123-184 (364)
46 PRK08116 hypothetical protein; 98.3 4.1E-06 8.8E-11 69.3 9.9 101 26-145 115-220 (268)
47 PRK14969 DNA polymerase III su 98.3 9.4E-06 2E-10 73.4 13.0 45 2-47 16-60 (527)
48 smart00382 AAA ATPases associa 98.3 4.9E-06 1.1E-10 60.8 9.2 39 25-65 2-40 (148)
49 PRK14962 DNA polymerase III su 98.3 6.5E-06 1.4E-10 73.3 11.4 45 2-47 14-58 (472)
50 PRK14963 DNA polymerase III su 98.3 8.5E-06 1.8E-10 73.1 11.8 45 3-48 15-59 (504)
51 PRK06645 DNA polymerase III su 98.3 1E-05 2.2E-10 72.6 12.0 44 3-47 22-65 (507)
52 PRK14951 DNA polymerase III su 98.3 9.9E-06 2.1E-10 74.1 12.1 45 2-47 16-60 (618)
53 PRK14958 DNA polymerase III su 98.3 1E-05 2.2E-10 72.8 12.0 45 2-47 16-60 (509)
54 PRK14964 DNA polymerase III su 98.3 1.1E-05 2.3E-10 71.9 12.0 45 2-47 13-57 (491)
55 PRK10536 hypothetical protein; 98.3 6.2E-06 1.3E-10 67.1 9.5 135 4-145 57-212 (262)
56 PRK08727 hypothetical protein; 98.3 4E-06 8.6E-11 68.0 8.5 37 25-63 41-77 (233)
57 TIGR02397 dnaX_nterm DNA polym 98.3 1.6E-05 3.5E-10 68.4 12.8 44 3-47 15-58 (355)
58 PRK13341 recombination factor 98.3 3.6E-06 7.9E-11 78.4 9.1 49 3-55 29-80 (725)
59 PRK08181 transposase; Validate 98.3 5.3E-06 1.2E-10 68.5 8.8 99 26-146 107-209 (269)
60 PRK03992 proteasome-activating 98.3 2.8E-06 6E-11 74.1 7.4 45 3-47 132-187 (389)
61 PF00004 AAA: ATPase family as 98.2 1.9E-06 4E-11 63.1 5.2 20 28-47 1-20 (132)
62 PRK14955 DNA polymerase III su 98.2 1E-05 2.3E-10 70.8 10.5 45 2-47 16-60 (397)
63 PRK08084 DNA replication initi 98.2 3.1E-06 6.8E-11 68.7 6.6 38 24-63 44-81 (235)
64 PRK07940 DNA polymerase III su 98.2 1.6E-05 3.5E-10 69.3 11.4 46 2-47 5-58 (394)
65 COG3899 Predicted ATPase [Gene 98.2 1.1E-05 2.4E-10 76.7 11.2 50 3-54 1-51 (849)
66 PRK09112 DNA polymerase III su 98.2 3.2E-05 6.9E-10 66.4 12.8 45 2-47 23-67 (351)
67 PRK07471 DNA polymerase III su 98.2 4.8E-05 1E-09 65.7 13.9 45 2-47 19-63 (365)
68 PRK07994 DNA polymerase III su 98.2 1.7E-05 3.8E-10 72.7 11.7 45 2-47 16-60 (647)
69 PRK14956 DNA polymerase III su 98.2 2.1E-05 4.6E-10 69.5 11.5 44 3-47 19-62 (484)
70 TIGR02903 spore_lon_C ATP-depe 98.2 1.9E-05 4.1E-10 72.7 11.7 46 2-49 154-199 (615)
71 TIGR02639 ClpA ATP-dependent C 98.2 6.7E-06 1.4E-10 77.4 8.5 44 2-47 182-225 (731)
72 PRK14970 DNA polymerase III su 98.2 3.9E-05 8.5E-10 66.4 12.6 44 3-47 18-61 (367)
73 PF05673 DUF815: Protein of un 98.2 1.7E-05 3.6E-10 63.9 9.3 119 3-151 28-156 (249)
74 PRK07764 DNA polymerase III su 98.2 2.3E-05 5E-10 74.1 11.8 44 3-47 16-59 (824)
75 PRK14952 DNA polymerase III su 98.2 4E-05 8.7E-10 69.8 12.7 45 2-47 13-57 (584)
76 PF00308 Bac_DnaA: Bacterial d 98.1 1.2E-05 2.5E-10 64.7 8.2 121 4-146 11-140 (219)
77 PRK05896 DNA polymerase III su 98.1 2.5E-05 5.4E-10 70.9 11.0 44 3-47 17-60 (605)
78 PRK09111 DNA polymerase III su 98.1 3.2E-05 7E-10 70.7 11.7 45 2-47 24-68 (598)
79 TIGR00678 holB DNA polymerase 98.1 6.3E-05 1.4E-09 58.9 11.9 34 13-47 3-36 (188)
80 PRK14088 dnaA chromosomal repl 98.1 2.1E-05 4.6E-10 69.7 10.2 99 25-144 130-235 (440)
81 CHL00181 cbbX CbbX; Provisiona 98.1 3.4E-05 7.4E-10 64.5 10.7 46 2-47 23-81 (287)
82 PRK12377 putative replication 98.1 1.4E-05 3E-10 65.3 8.1 74 25-119 101-174 (248)
83 PRK05642 DNA replication initi 98.1 1.2E-05 2.6E-10 65.3 7.8 37 25-63 45-81 (234)
84 PRK10865 protein disaggregatio 98.1 1.2E-05 2.5E-10 76.8 8.8 44 2-47 178-221 (857)
85 CHL00095 clpC Clp protease ATP 98.1 1.6E-05 3.4E-10 75.8 9.7 44 2-47 179-222 (821)
86 PRK08903 DnaA regulatory inact 98.1 1.6E-05 3.5E-10 64.1 8.4 45 3-47 19-64 (227)
87 PRK09183 transposase/IS protei 98.1 1E-05 2.2E-10 66.7 7.1 23 25-47 102-124 (259)
88 TIGR02881 spore_V_K stage V sp 98.1 1.2E-05 2.6E-10 66.3 7.4 45 3-47 7-64 (261)
89 KOG2227 Pre-initiation complex 98.1 3.3E-05 7.2E-10 67.1 9.8 114 2-119 150-267 (529)
90 PRK14950 DNA polymerase III su 98.1 6.4E-05 1.4E-09 69.0 12.4 134 2-145 16-159 (585)
91 PRK06526 transposase; Provisio 98.1 7.7E-06 1.7E-10 67.1 5.8 99 25-146 98-201 (254)
92 COG0470 HolB ATPase involved i 98.1 6.5E-05 1.4E-09 63.7 11.6 121 3-145 2-148 (325)
93 PRK14954 DNA polymerase III su 98.1 4.2E-05 9E-10 70.2 11.0 45 2-47 16-60 (620)
94 PF01695 IstB_IS21: IstB-like 98.1 4.9E-06 1.1E-10 64.6 4.3 75 24-120 46-120 (178)
95 TIGR02639 ClpA ATP-dependent C 98.0 1.5E-05 3.2E-10 75.0 8.2 46 2-47 454-506 (731)
96 TIGR02880 cbbX_cfxQ probable R 98.0 2.9E-05 6.2E-10 64.9 9.0 45 3-47 23-80 (284)
97 PRK00149 dnaA chromosomal repl 98.0 2.4E-05 5.2E-10 69.7 8.9 101 24-146 147-254 (450)
98 TIGR00362 DnaA chromosomal rep 98.0 2.4E-05 5.1E-10 68.7 8.8 99 25-145 136-241 (405)
99 PF04665 Pox_A32: Poxvirus A32 98.0 2.4E-05 5.2E-10 63.3 7.9 36 26-63 14-49 (241)
100 TIGR03345 VI_ClpV1 type VI sec 98.0 2.5E-05 5.4E-10 74.4 8.7 44 2-47 187-230 (852)
101 TIGR03346 chaperone_ClpB ATP-d 98.0 2.2E-05 4.8E-10 75.0 8.2 44 2-47 173-216 (852)
102 PRK14965 DNA polymerase III su 98.0 0.00011 2.3E-09 67.4 12.0 45 2-47 16-60 (576)
103 PRK07952 DNA replication prote 98.0 5.7E-05 1.2E-09 61.5 9.2 101 25-145 99-204 (244)
104 KOG0989 Replication factor C, 98.0 3.1E-05 6.8E-10 63.9 7.6 132 3-151 37-175 (346)
105 PRK08451 DNA polymerase III su 98.0 0.00015 3.2E-09 65.4 12.5 44 3-47 15-58 (535)
106 PRK12422 chromosomal replicati 98.0 5.3E-05 1.1E-09 67.1 9.6 99 25-145 141-244 (445)
107 PRK14087 dnaA chromosomal repl 98.0 3.7E-05 8.1E-10 68.3 8.6 102 25-146 141-249 (450)
108 PRK14959 DNA polymerase III su 98.0 0.0001 2.2E-09 67.3 11.3 45 3-48 17-61 (624)
109 PF13177 DNA_pol3_delta2: DNA 97.9 0.0002 4.3E-09 54.7 11.3 118 6-147 1-143 (162)
110 PRK14953 DNA polymerase III su 97.9 0.00019 4.1E-09 64.3 12.8 44 3-47 17-60 (486)
111 PTZ00454 26S protease regulato 97.9 2.4E-05 5.3E-10 68.2 6.9 45 3-47 146-201 (398)
112 PRK05563 DNA polymerase III su 97.9 0.00024 5.3E-09 64.8 13.4 45 2-47 16-60 (559)
113 PF02562 PhoH: PhoH-like prote 97.9 1.1E-05 2.4E-10 63.7 4.1 129 4-145 2-155 (205)
114 TIGR03345 VI_ClpV1 type VI sec 97.9 4.2E-05 9.2E-10 72.9 8.7 46 2-47 566-618 (852)
115 PRK08939 primosomal protein Dn 97.9 7.8E-05 1.7E-09 62.9 9.4 100 24-145 155-260 (306)
116 PRK09361 radB DNA repair and r 97.9 5.5E-05 1.2E-09 60.9 8.2 99 14-118 12-117 (225)
117 COG1484 DnaC DNA replication p 97.9 6.1E-05 1.3E-09 61.8 8.5 76 24-120 104-179 (254)
118 PRK06305 DNA polymerase III su 97.9 0.00016 3.4E-09 64.3 11.7 45 2-47 17-61 (451)
119 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00017 3.7E-09 69.1 12.6 46 2-47 565-617 (852)
120 PRK14971 DNA polymerase III su 97.9 0.00019 4.2E-09 66.1 12.4 44 3-47 18-61 (614)
121 cd01393 recA_like RecA is a b 97.9 0.00017 3.6E-09 58.1 10.5 99 15-118 9-124 (226)
122 PF14516 AAA_35: AAA-like doma 97.9 0.0028 6E-08 54.2 18.3 110 3-119 12-138 (331)
123 PRK14086 dnaA chromosomal repl 97.9 5.5E-05 1.2E-09 68.8 8.3 99 26-146 315-420 (617)
124 PRK08118 topology modulation p 97.9 6.3E-06 1.4E-10 63.4 2.0 35 26-60 2-37 (167)
125 cd01123 Rad51_DMC1_radA Rad51_ 97.9 0.0001 2.2E-09 59.7 9.1 99 17-118 11-125 (235)
126 PRK06835 DNA replication prote 97.9 5.2E-05 1.1E-09 64.5 7.6 100 26-145 184-288 (329)
127 PRK06647 DNA polymerase III su 97.9 0.00028 6.1E-09 64.3 12.6 44 3-47 17-60 (563)
128 PRK06696 uridine kinase; Valid 97.9 3.3E-05 7.2E-10 62.2 5.9 42 6-47 2-44 (223)
129 KOG2028 ATPase related to the 97.8 0.00017 3.6E-09 61.2 10.0 97 24-146 161-261 (554)
130 PRK10865 protein disaggregatio 97.8 0.00016 3.5E-09 69.2 11.3 46 2-47 568-620 (857)
131 PRK06921 hypothetical protein; 97.8 5.6E-05 1.2E-09 62.5 7.2 37 25-63 117-154 (266)
132 PRK04296 thymidine kinase; Pro 97.8 2.2E-05 4.8E-10 61.6 4.6 114 26-148 3-118 (190)
133 TIGR02237 recomb_radB DNA repa 97.8 8.6E-05 1.9E-09 59.0 8.0 90 23-118 10-107 (209)
134 PRK14948 DNA polymerase III su 97.8 0.00029 6.3E-09 64.9 12.4 134 3-145 17-160 (620)
135 PRK11034 clpA ATP-dependent Cl 97.8 8.4E-05 1.8E-09 69.8 9.0 44 2-47 186-229 (758)
136 PRK12608 transcription termina 97.8 0.00011 2.3E-09 63.2 8.8 102 12-118 121-230 (380)
137 TIGR00602 rad24 checkpoint pro 97.8 5.8E-05 1.3E-09 69.3 7.6 46 2-47 84-132 (637)
138 TIGR03689 pup_AAA proteasome A 97.8 3.4E-05 7.4E-10 69.1 5.7 46 3-48 183-239 (512)
139 cd01120 RecA-like_NTPases RecA 97.8 0.00015 3.3E-09 54.6 8.6 39 27-67 1-39 (165)
140 CHL00095 clpC Clp protease ATP 97.8 0.00029 6.4E-09 67.3 12.2 132 2-145 509-661 (821)
141 PRK11034 clpA ATP-dependent Cl 97.8 5.7E-05 1.2E-09 70.9 7.1 46 2-47 458-510 (758)
142 PRK07133 DNA polymerase III su 97.8 0.00031 6.7E-09 65.3 11.7 44 3-47 19-62 (725)
143 PRK09087 hypothetical protein; 97.8 8.4E-05 1.8E-09 60.0 7.1 23 25-47 44-66 (226)
144 KOG0733 Nuclear AAA ATPase (VC 97.8 7.5E-05 1.6E-09 67.0 7.2 92 3-118 191-292 (802)
145 COG0542 clpA ATP-binding subun 97.8 0.00015 3.2E-09 67.5 9.4 117 2-132 491-619 (786)
146 PRK07261 topology modulation p 97.8 0.00011 2.5E-09 56.6 7.5 21 27-47 2-22 (171)
147 PRK07399 DNA polymerase III su 97.8 0.0014 3.1E-08 55.5 14.7 45 2-47 4-48 (314)
148 cd01394 radB RadB. The archaea 97.8 0.00022 4.8E-09 57.1 9.4 102 13-118 7-113 (218)
149 COG1373 Predicted ATPase (AAA+ 97.8 0.00023 5E-09 62.3 10.1 95 27-148 39-133 (398)
150 KOG2004 Mitochondrial ATP-depe 97.8 5.4E-05 1.2E-09 68.9 6.2 103 1-119 410-516 (906)
151 smart00763 AAA_PrkA PrkA AAA d 97.7 2.9E-05 6.2E-10 66.2 4.0 46 3-48 52-101 (361)
152 PF00158 Sigma54_activat: Sigm 97.7 0.00013 2.7E-09 56.2 7.2 44 4-47 1-44 (168)
153 TIGR02012 tigrfam_recA protein 97.7 0.00012 2.6E-09 61.9 7.6 96 14-118 43-143 (321)
154 cd00561 CobA_CobO_BtuR ATP:cor 97.7 0.00065 1.4E-08 51.5 10.8 117 26-146 3-138 (159)
155 PRK09354 recA recombinase A; P 97.7 0.00013 2.9E-09 62.2 7.8 96 14-118 48-148 (349)
156 cd00983 recA RecA is a bacter 97.7 0.00012 2.7E-09 61.8 7.5 87 23-118 53-143 (325)
157 PRK07667 uridine kinase; Provi 97.7 7.9E-05 1.7E-09 58.6 5.9 37 11-47 3-39 (193)
158 KOG0744 AAA+-type ATPase [Post 97.7 0.00015 3.2E-09 60.4 7.6 80 25-118 177-260 (423)
159 PRK05707 DNA polymerase III su 97.7 0.0011 2.3E-08 56.6 13.1 24 24-47 21-44 (328)
160 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00057 1.2E-08 56.4 11.2 53 11-72 11-63 (262)
161 PRK06620 hypothetical protein; 97.7 0.00013 2.8E-09 58.4 7.1 23 26-48 45-67 (214)
162 PF14532 Sigma54_activ_2: Sigm 97.7 9.4E-05 2E-09 54.9 5.9 44 5-48 1-44 (138)
163 PRK05541 adenylylsulfate kinas 97.7 7.1E-05 1.5E-09 57.9 5.4 36 24-61 6-41 (176)
164 PRK06067 flagellar accessory p 97.7 0.00033 7.2E-09 56.8 9.3 98 14-118 14-130 (234)
165 CHL00176 ftsH cell division pr 97.7 8.9E-05 1.9E-09 68.4 6.4 45 3-47 184-238 (638)
166 COG1222 RPT1 ATP-dependent 26S 97.7 0.00026 5.6E-09 59.8 8.4 123 5-152 154-306 (406)
167 PRK08058 DNA polymerase III su 97.7 0.00065 1.4E-08 58.0 11.0 134 3-146 6-150 (329)
168 PF13207 AAA_17: AAA domain; P 97.6 3.6E-05 7.9E-10 55.5 2.8 21 27-47 1-21 (121)
169 COG2255 RuvB Holliday junction 97.6 5.4E-05 1.2E-09 61.9 3.9 46 2-47 26-74 (332)
170 TIGR01243 CDC48 AAA family ATP 97.6 0.00033 7.2E-09 66.1 9.5 45 3-47 454-509 (733)
171 TIGR01243 CDC48 AAA family ATP 97.6 0.00015 3.3E-09 68.4 7.1 45 3-47 179-234 (733)
172 PHA00729 NTP-binding motif con 97.6 0.00031 6.7E-09 56.3 7.7 32 14-47 8-39 (226)
173 cd01131 PilT Pilus retraction 97.6 0.00018 3.9E-09 56.8 6.3 110 26-148 2-111 (198)
174 PRK11608 pspF phage shock prot 97.6 0.00047 1E-08 58.8 9.2 46 2-47 6-51 (326)
175 PF00448 SRP54: SRP54-type pro 97.6 0.00011 2.4E-09 57.9 5.0 57 25-83 1-58 (196)
176 COG0593 DnaA ATPase involved i 97.6 0.00038 8.3E-09 60.4 8.6 102 24-146 112-218 (408)
177 PRK15429 formate hydrogenlyase 97.6 0.00041 8.9E-09 65.1 9.5 45 3-47 377-421 (686)
178 PF08423 Rad51: Rad51; InterP 97.6 0.00018 3.8E-09 59.2 6.2 94 24-118 37-143 (256)
179 PTZ00361 26 proteosome regulat 97.6 0.0001 2.3E-09 64.9 5.1 51 3-55 184-245 (438)
180 PRK04301 radA DNA repair and r 97.6 0.00065 1.4E-08 57.7 9.8 93 23-118 100-208 (317)
181 PRK11889 flhF flagellar biosyn 97.6 0.0015 3.1E-08 56.7 11.7 24 24-47 240-263 (436)
182 KOG0991 Replication factor C, 97.5 0.00033 7.1E-09 56.0 6.7 65 3-71 28-94 (333)
183 PLN03187 meiotic recombination 97.5 0.00054 1.2E-08 58.6 8.5 95 23-118 124-231 (344)
184 TIGR02238 recomb_DMC1 meiotic 97.5 0.00064 1.4E-08 57.5 8.8 101 17-118 88-201 (313)
185 cd01133 F1-ATPase_beta F1 ATP 97.5 0.00048 1E-08 56.9 7.6 92 24-119 68-174 (274)
186 TIGR01241 FtsH_fam ATP-depende 97.5 0.00011 2.3E-09 66.3 4.0 45 3-47 56-110 (495)
187 KOG2228 Origin recognition com 97.5 0.0028 6E-08 53.4 11.8 184 3-193 25-238 (408)
188 PRK15455 PrkA family serine pr 97.5 0.00015 3.3E-09 65.3 4.7 45 3-47 77-125 (644)
189 COG2884 FtsE Predicted ATPase 97.5 0.0011 2.4E-08 51.4 8.6 55 99-153 146-204 (223)
190 PRK05022 anaerobic nitric oxid 97.5 0.001 2.3E-08 60.2 10.1 46 2-47 187-232 (509)
191 COG1102 Cmk Cytidylate kinase 97.5 0.00017 3.7E-09 54.2 4.1 46 27-85 2-47 (179)
192 cd01121 Sms Sms (bacterial rad 97.4 0.00067 1.5E-08 58.7 8.4 96 13-118 70-168 (372)
193 COG0466 Lon ATP-dependent Lon 97.4 0.00013 2.8E-09 66.6 4.1 53 1-55 322-378 (782)
194 TIGR00763 lon ATP-dependent pr 97.4 0.00043 9.3E-09 65.7 7.8 52 2-55 320-375 (775)
195 PRK13531 regulatory ATPase Rav 97.4 0.00015 3.3E-09 64.1 4.5 42 2-47 20-61 (498)
196 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0012 2.6E-08 53.7 9.4 59 13-75 9-67 (237)
197 COG2607 Predicted ATPase (AAA+ 97.4 0.0021 4.6E-08 51.6 10.3 98 3-132 61-166 (287)
198 TIGR01817 nifA Nif-specific re 97.4 0.00099 2.1E-08 60.7 9.8 45 3-47 197-241 (534)
199 cd03214 ABC_Iron-Siderophores_ 97.4 0.00078 1.7E-08 52.3 7.9 120 24-148 24-160 (180)
200 TIGR02239 recomb_RAD51 DNA rep 97.4 0.00092 2E-08 56.7 8.6 104 14-118 85-201 (316)
201 CHL00195 ycf46 Ycf46; Provisio 97.4 0.00067 1.5E-08 60.8 8.0 24 24-47 258-281 (489)
202 KOG0734 AAA+-type ATPase conta 97.4 0.0014 3E-08 58.3 9.6 41 9-49 314-361 (752)
203 TIGR02974 phageshock_pspF psp 97.4 0.0012 2.6E-08 56.3 9.2 44 4-47 1-44 (329)
204 TIGR02236 recomb_radA DNA repa 97.4 0.0013 2.7E-08 55.7 9.2 59 23-82 93-155 (310)
205 TIGR03499 FlhF flagellar biosy 97.4 0.00087 1.9E-08 56.0 8.0 88 24-117 193-281 (282)
206 COG0572 Udk Uridine kinase [Nu 97.4 0.00048 1E-08 54.7 6.0 29 24-54 7-35 (218)
207 TIGR00390 hslU ATP-dependent p 97.4 0.00071 1.5E-08 58.9 7.6 53 1-55 11-75 (441)
208 PRK09270 nucleoside triphospha 97.4 0.001 2.2E-08 53.7 8.1 25 23-47 31-55 (229)
209 KOG0741 AAA+-type ATPase [Post 97.4 0.0014 3.1E-08 58.2 9.2 108 23-153 536-658 (744)
210 PRK14722 flhF flagellar biosyn 97.3 0.0026 5.6E-08 55.0 10.7 87 24-118 136-225 (374)
211 KOG1969 DNA replication checkp 97.3 0.00074 1.6E-08 61.9 7.5 74 23-120 324-399 (877)
212 cd03247 ABCC_cytochrome_bd The 97.3 0.0018 3.9E-08 50.2 8.8 24 24-47 27-50 (178)
213 PRK12723 flagellar biosynthesi 97.3 0.0038 8.3E-08 54.3 11.6 89 24-118 173-264 (388)
214 KOG1514 Origin recognition com 97.3 0.0029 6.2E-08 57.9 11.0 132 4-143 398-546 (767)
215 PTZ00301 uridine kinase; Provi 97.3 0.00039 8.4E-09 55.4 5.1 23 25-47 3-25 (210)
216 PRK00771 signal recognition pa 97.3 0.0027 5.9E-08 56.1 10.7 58 24-83 94-152 (437)
217 PLN03186 DNA repair protein RA 97.3 0.0021 4.5E-08 55.1 9.5 102 16-118 114-228 (342)
218 COG1875 NYN ribonuclease and A 97.3 0.00084 1.8E-08 57.0 6.9 135 5-146 227-388 (436)
219 PRK11823 DNA repair protein Ra 97.3 0.0018 3.9E-08 57.6 9.5 97 12-118 67-166 (446)
220 PRK06547 hypothetical protein; 97.3 0.00043 9.3E-09 53.4 4.7 33 14-48 6-38 (172)
221 TIGR00959 ffh signal recogniti 97.3 0.0034 7.3E-08 55.4 10.8 24 24-47 98-121 (428)
222 PF13604 AAA_30: AAA domain; P 97.3 0.0013 2.9E-08 51.8 7.6 111 11-143 6-128 (196)
223 PRK12724 flagellar biosynthesi 97.3 0.003 6.6E-08 55.2 10.3 23 25-47 223-245 (432)
224 PRK14974 cell division protein 97.3 0.0051 1.1E-07 52.5 11.5 58 24-84 139-198 (336)
225 PF03308 ArgK: ArgK protein; 97.3 0.0004 8.7E-09 56.4 4.5 63 10-72 14-76 (266)
226 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0034 7.4E-08 48.1 9.5 25 24-48 26-50 (166)
227 PRK09519 recA DNA recombinatio 97.2 0.0013 2.8E-08 61.8 8.2 97 13-118 47-148 (790)
228 PRK10867 signal recognition pa 97.2 0.0021 4.5E-08 56.7 9.1 24 24-47 99-122 (433)
229 COG0468 RecA RecA/RadA recombi 97.2 0.0025 5.4E-08 52.9 9.0 91 23-118 58-151 (279)
230 PRK08533 flagellar accessory p 97.2 0.0021 4.6E-08 52.0 8.4 61 16-81 15-75 (230)
231 PF00485 PRK: Phosphoribulokin 97.2 0.00024 5.1E-09 55.9 2.8 21 27-47 1-21 (194)
232 PLN00020 ribulose bisphosphate 97.2 0.001 2.3E-08 56.9 6.7 30 23-54 146-175 (413)
233 PRK08233 hypothetical protein; 97.2 0.00031 6.6E-09 54.4 3.4 23 25-47 3-25 (182)
234 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0015 3.3E-08 53.8 7.6 42 23-66 34-75 (259)
235 cd03115 SRP The signal recogni 97.2 0.0031 6.7E-08 48.5 8.9 21 27-47 2-22 (173)
236 PF13238 AAA_18: AAA domain; P 97.2 0.00024 5.3E-09 51.4 2.5 20 28-47 1-20 (129)
237 cd03238 ABC_UvrA The excision 97.2 0.0023 5.1E-08 49.5 8.1 115 24-149 20-152 (176)
238 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0031 6.8E-08 50.8 9.1 51 13-65 8-58 (229)
239 TIGR02655 circ_KaiC circadian 97.2 0.0019 4.1E-08 58.1 8.6 100 12-118 250-363 (484)
240 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00067 1.5E-08 49.9 4.7 41 8-48 5-45 (133)
241 PTZ00035 Rad51 protein; Provis 97.2 0.0046 1E-07 52.9 10.5 100 16-118 109-223 (337)
242 PRK10787 DNA-binding ATP-depen 97.2 0.00044 9.5E-09 65.5 4.6 53 1-55 321-377 (784)
243 COG4088 Predicted nucleotide k 97.2 0.0031 6.8E-08 49.5 8.4 27 26-54 2-28 (261)
244 TIGR00064 ftsY signal recognit 97.2 0.0036 7.7E-08 52.0 9.4 56 24-81 71-127 (272)
245 TIGR02858 spore_III_AA stage I 97.2 0.0028 6E-08 52.5 8.6 130 11-148 98-231 (270)
246 PF07724 AAA_2: AAA domain (Cd 97.2 0.00065 1.4E-08 52.4 4.6 39 25-65 3-42 (171)
247 TIGR00708 cobA cob(I)alamin ad 97.2 0.0023 5E-08 49.2 7.5 118 25-146 5-140 (173)
248 KOG0735 AAA+-type ATPase [Post 97.2 0.002 4.4E-08 59.0 8.3 75 24-118 430-504 (952)
249 COG1618 Predicted nucleotide k 97.2 0.00041 8.8E-09 52.2 3.3 23 25-47 5-27 (179)
250 COG0467 RAD55 RecA-superfamily 97.1 0.0015 3.2E-08 53.9 6.9 53 20-76 18-70 (260)
251 PRK04328 hypothetical protein; 97.1 0.0018 3.8E-08 53.1 7.3 51 14-66 12-62 (249)
252 COG0542 clpA ATP-binding subun 97.1 0.00046 9.9E-09 64.3 4.2 123 2-146 170-310 (786)
253 TIGR01420 pilT_fam pilus retra 97.1 0.0024 5.1E-08 54.9 8.4 110 25-147 122-231 (343)
254 PRK05480 uridine/cytidine kina 97.1 0.00043 9.2E-09 55.1 3.4 24 24-47 5-28 (209)
255 PF13671 AAA_33: AAA domain; P 97.1 0.0004 8.8E-09 51.5 3.1 21 27-47 1-21 (143)
256 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0014 2.9E-08 54.3 6.4 91 25-129 80-170 (264)
257 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0045 9.8E-08 46.2 8.6 24 24-47 25-48 (144)
258 PRK05201 hslU ATP-dependent pr 97.1 0.0016 3.5E-08 56.8 6.9 52 2-55 15-78 (443)
259 cd02025 PanK Pantothenate kina 97.1 0.0022 4.8E-08 51.5 7.3 21 27-47 1-21 (220)
260 KOG1051 Chaperone HSP104 and r 97.1 0.0063 1.4E-07 57.8 11.2 104 2-120 562-672 (898)
261 TIGR00764 lon_rel lon-related 97.1 0.0017 3.6E-08 60.0 7.4 46 2-53 18-63 (608)
262 PF01583 APS_kinase: Adenylyls 97.1 0.00067 1.4E-08 51.3 3.9 36 25-62 2-37 (156)
263 PRK06762 hypothetical protein; 97.1 0.00046 9.9E-09 52.8 3.1 23 25-47 2-24 (166)
264 PRK10820 DNA-binding transcrip 97.1 0.0037 8.1E-08 56.7 9.4 46 2-47 204-249 (520)
265 PRK05703 flhF flagellar biosyn 97.1 0.01 2.2E-07 52.5 11.8 87 25-117 221-308 (424)
266 TIGR00235 udk uridine kinase. 97.1 0.00047 1E-08 54.8 3.3 24 24-47 5-28 (207)
267 TIGR00416 sms DNA repair prote 97.1 0.0039 8.4E-08 55.6 9.3 96 13-118 82-180 (454)
268 PRK10733 hflB ATP-dependent me 97.1 0.0015 3.1E-08 60.9 6.9 23 25-47 185-207 (644)
269 COG1643 HrpA HrpA-like helicas 97.1 0.0037 8.1E-08 59.2 9.6 134 8-149 52-208 (845)
270 KOG0924 mRNA splicing factor A 97.1 0.0037 8.1E-08 57.1 9.0 131 11-151 361-515 (1042)
271 COG1066 Sms Predicted ATP-depe 97.1 0.0024 5.1E-08 55.1 7.5 97 12-119 80-179 (456)
272 PRK05986 cob(I)alamin adenolsy 97.1 0.004 8.7E-08 48.6 8.2 118 25-146 22-158 (191)
273 cd02027 APSK Adenosine 5'-phos 97.1 0.0037 7.9E-08 47.0 7.7 21 27-47 1-21 (149)
274 COG1703 ArgK Putative periplas 97.0 0.0007 1.5E-08 56.0 4.0 66 11-76 37-102 (323)
275 PF07728 AAA_5: AAA domain (dy 97.0 0.0013 2.9E-08 48.6 5.2 75 28-119 2-76 (139)
276 COG0194 Gmk Guanylate kinase [ 97.0 0.0043 9.4E-08 47.9 7.9 24 25-48 4-27 (191)
277 COG0714 MoxR-like ATPases [Gen 97.0 0.0018 3.8E-08 55.3 6.5 62 3-73 25-86 (329)
278 PRK00889 adenylylsulfate kinas 97.0 0.0015 3.3E-08 50.4 5.6 24 24-47 3-26 (175)
279 COG3267 ExeA Type II secretory 97.0 0.027 5.9E-07 45.7 12.7 100 24-129 50-154 (269)
280 TIGR01425 SRP54_euk signal rec 97.0 0.0081 1.8E-07 52.9 10.6 24 24-47 99-122 (429)
281 PRK14723 flhF flagellar biosyn 97.0 0.009 2E-07 56.1 11.4 23 25-47 185-207 (767)
282 COG4608 AppF ABC-type oligopep 97.0 0.0038 8.2E-08 51.1 7.9 126 24-153 38-177 (268)
283 PRK11388 DNA-binding transcrip 97.0 0.0018 3.9E-08 60.3 6.9 45 3-47 326-370 (638)
284 PRK05439 pantothenate kinase; 97.0 0.005 1.1E-07 52.0 8.9 25 23-47 84-108 (311)
285 PRK13765 ATP-dependent proteas 97.0 0.0017 3.6E-08 60.0 6.4 72 3-81 32-104 (637)
286 PRK12726 flagellar biosynthesi 97.0 0.0098 2.1E-07 51.4 10.6 89 24-118 205-295 (407)
287 PF00154 RecA: recA bacterial 97.0 0.005 1.1E-07 52.1 8.8 88 23-119 51-142 (322)
288 COG2842 Uncharacterized ATPase 97.0 0.0053 1.1E-07 50.8 8.6 96 25-132 94-191 (297)
289 PRK14721 flhF flagellar biosyn 97.0 0.0087 1.9E-07 52.6 10.5 24 24-47 190-213 (420)
290 cd02019 NK Nucleoside/nucleoti 97.0 0.00055 1.2E-08 44.4 2.4 21 27-47 1-21 (69)
291 cd01122 GP4d_helicase GP4d_hel 97.0 0.012 2.6E-07 48.7 11.0 52 24-79 29-81 (271)
292 PRK12727 flagellar biosynthesi 97.0 0.0039 8.4E-08 56.0 8.3 24 24-47 349-372 (559)
293 cd03228 ABCC_MRP_Like The MRP 97.0 0.0032 6.9E-08 48.4 6.9 24 24-47 27-50 (171)
294 PRK03839 putative kinase; Prov 96.9 0.00063 1.4E-08 52.8 2.8 21 27-47 2-22 (180)
295 PTZ00088 adenylate kinase 1; P 96.9 0.0011 2.4E-08 53.6 4.0 21 27-47 8-28 (229)
296 PRK10923 glnG nitrogen regulat 96.9 0.0091 2E-07 53.5 10.3 45 3-47 139-183 (469)
297 COG0563 Adk Adenylate kinase a 96.9 0.0013 2.8E-08 51.0 4.2 22 27-48 2-23 (178)
298 PRK00131 aroK shikimate kinase 96.9 0.00084 1.8E-08 51.4 3.1 23 25-47 4-26 (175)
299 PRK03846 adenylylsulfate kinas 96.9 0.0023 5E-08 50.5 5.6 24 24-47 23-46 (198)
300 cd03216 ABC_Carb_Monos_I This 96.9 0.0031 6.7E-08 48.1 6.1 113 24-147 25-143 (163)
301 PRK06995 flhF flagellar biosyn 96.9 0.0097 2.1E-07 53.2 10.0 60 24-83 255-315 (484)
302 PRK06217 hypothetical protein; 96.9 0.0023 5E-08 49.8 5.5 22 27-48 3-24 (183)
303 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0039 8.4E-08 56.4 7.3 104 24-151 544-662 (802)
304 PRK08769 DNA polymerase III su 96.8 0.024 5.3E-07 48.1 11.8 37 10-47 12-48 (319)
305 TIGR00554 panK_bact pantothena 96.8 0.0051 1.1E-07 51.5 7.6 25 23-47 60-84 (290)
306 cd01130 VirB11-like_ATPase Typ 96.8 0.0026 5.6E-08 49.7 5.5 108 10-128 13-120 (186)
307 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0011 2.3E-08 51.6 3.3 24 24-47 2-25 (188)
308 PTZ00494 tuzin-like protein; P 96.8 0.013 2.8E-07 51.6 9.9 106 2-115 371-478 (664)
309 PF08433 KTI12: Chromatin asso 96.8 0.0017 3.7E-08 53.8 4.5 22 26-47 2-23 (270)
310 COG2812 DnaX DNA polymerase II 96.8 0.0039 8.4E-08 55.9 7.0 137 2-149 16-163 (515)
311 cd03246 ABCC_Protease_Secretio 96.8 0.0059 1.3E-07 47.0 7.3 24 24-47 27-50 (173)
312 PRK06871 DNA polymerase III su 96.8 0.027 5.8E-07 47.9 11.8 126 10-146 10-147 (325)
313 COG0464 SpoVK ATPases of the A 96.8 0.0016 3.5E-08 58.8 4.7 71 24-118 275-345 (494)
314 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0019 4.1E-08 54.9 4.7 46 2-47 61-110 (358)
315 PF07726 AAA_3: ATPase family 96.8 0.00067 1.5E-08 49.3 1.7 28 28-57 2-29 (131)
316 cd00227 CPT Chloramphenicol (C 96.8 0.0012 2.5E-08 51.1 3.2 22 26-47 3-24 (175)
317 cd02028 UMPK_like Uridine mono 96.8 0.0011 2.3E-08 51.6 2.9 21 27-47 1-21 (179)
318 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.014 3E-07 46.6 9.4 23 25-47 29-51 (213)
319 COG1419 FlhF Flagellar GTP-bin 96.8 0.029 6.2E-07 48.7 11.7 60 25-85 203-264 (407)
320 PRK08972 fliI flagellum-specif 96.8 0.0065 1.4E-07 53.5 7.9 89 24-118 161-262 (444)
321 PF12775 AAA_7: P-loop contain 96.8 0.00072 1.6E-08 56.1 2.0 33 12-47 23-55 (272)
322 PRK05342 clpX ATP-dependent pr 96.8 0.0019 4.2E-08 56.7 4.7 46 2-47 71-130 (412)
323 TIGR02322 phosphon_PhnN phosph 96.8 0.0011 2.4E-08 51.2 3.0 22 26-47 2-23 (179)
324 cd01124 KaiC KaiC is a circadi 96.8 0.0028 6E-08 49.2 5.2 44 28-75 2-45 (187)
325 PF00625 Guanylate_kin: Guanyl 96.8 0.0019 4.1E-08 50.3 4.2 36 25-62 2-37 (183)
326 PRK06002 fliI flagellum-specif 96.8 0.0053 1.2E-07 54.2 7.4 89 25-118 165-264 (450)
327 PRK04040 adenylate kinase; Pro 96.8 0.0012 2.5E-08 51.8 3.0 47 25-82 2-48 (188)
328 cd02023 UMPK Uridine monophosp 96.8 0.0009 1.9E-08 52.7 2.4 21 27-47 1-21 (198)
329 PF00910 RNA_helicase: RNA hel 96.7 0.00065 1.4E-08 48.1 1.3 20 28-47 1-20 (107)
330 PRK14738 gmk guanylate kinase; 96.7 0.0016 3.4E-08 51.8 3.6 27 21-47 9-35 (206)
331 TIGR02902 spore_lonB ATP-depen 96.7 0.0018 3.9E-08 58.9 4.3 43 3-47 66-108 (531)
332 TIGR02782 TrbB_P P-type conjug 96.7 0.027 5.8E-07 47.5 11.0 88 26-127 133-223 (299)
333 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.001 2.3E-08 51.6 2.3 21 27-47 1-21 (183)
334 PF13086 AAA_11: AAA domain; P 96.7 0.0033 7E-08 50.3 5.2 50 27-78 19-75 (236)
335 cd02024 NRK1 Nicotinamide ribo 96.7 0.0011 2.3E-08 51.9 2.3 21 27-47 1-21 (187)
336 PRK00625 shikimate kinase; Pro 96.7 0.0013 2.8E-08 50.9 2.7 21 27-47 2-22 (173)
337 KOG2170 ATPase of the AAA+ sup 96.7 0.0024 5.2E-08 52.9 4.4 112 4-131 84-203 (344)
338 COG0541 Ffh Signal recognition 96.7 0.034 7.4E-07 48.5 11.4 73 11-85 79-159 (451)
339 PRK09435 membrane ATPase/prote 96.7 0.0056 1.2E-07 52.2 6.7 37 11-47 42-78 (332)
340 TIGR02329 propionate_PrpR prop 96.7 0.0083 1.8E-07 54.4 8.1 45 3-47 213-257 (526)
341 TIGR01967 DEAH_box_HrpA ATP-de 96.7 0.012 2.6E-07 58.2 9.7 71 8-84 69-139 (1283)
342 PRK05537 bifunctional sulfate 96.7 0.0028 6.2E-08 58.0 5.1 45 3-47 370-414 (568)
343 TIGR03263 guanyl_kin guanylate 96.7 0.0016 3.6E-08 50.3 3.1 22 26-47 2-23 (180)
344 COG1121 ZnuC ABC-type Mn/Zn tr 96.6 0.0066 1.4E-07 49.5 6.6 124 25-151 30-204 (254)
345 PF03193 DUF258: Protein of un 96.6 0.0039 8.3E-08 47.4 4.9 35 9-48 24-58 (161)
346 TIGR00455 apsK adenylylsulfate 96.6 0.011 2.4E-07 45.9 7.8 24 24-47 17-40 (184)
347 cd02021 GntK Gluconate kinase 96.6 0.0013 2.9E-08 49.2 2.5 21 27-47 1-21 (150)
348 COG2019 AdkA Archaeal adenylat 96.6 0.0056 1.2E-07 46.4 5.7 48 25-85 4-52 (189)
349 KOG0729 26S proteasome regulat 96.6 0.013 2.9E-07 47.9 8.2 48 6-55 181-239 (435)
350 PRK14737 gmk guanylate kinase; 96.6 0.0023 5.1E-08 50.0 3.9 24 24-47 3-26 (186)
351 PRK13947 shikimate kinase; Pro 96.6 0.0015 3.2E-08 50.1 2.7 21 27-47 3-23 (171)
352 PRK05973 replicative DNA helic 96.6 0.0076 1.6E-07 48.9 6.8 49 24-76 63-111 (237)
353 TIGR02788 VirB11 P-type DNA tr 96.6 0.0066 1.4E-07 51.4 6.8 110 25-146 144-253 (308)
354 PLN02318 phosphoribulokinase/u 96.6 0.0028 6.2E-08 57.5 4.8 33 15-47 55-87 (656)
355 cd01135 V_A-ATPase_B V/A-type 96.6 0.01 2.2E-07 49.1 7.6 94 24-119 68-177 (276)
356 PHA02244 ATPase-like protein 96.6 0.002 4.2E-08 55.4 3.6 46 2-47 96-141 (383)
357 cd00071 GMPK Guanosine monopho 96.6 0.0018 3.8E-08 48.0 2.9 20 28-47 2-21 (137)
358 PRK07993 DNA polymerase III su 96.6 0.022 4.7E-07 48.8 9.9 163 10-185 10-205 (334)
359 PF10443 RNA12: RNA12 protein; 96.6 0.01 2.2E-07 51.8 7.8 40 7-48 1-41 (431)
360 PF07693 KAP_NTPase: KAP famil 96.6 0.01 2.2E-07 50.3 7.9 41 7-47 1-42 (325)
361 TIGR01650 PD_CobS cobaltochela 96.6 0.0034 7.4E-08 53.1 4.8 58 3-69 46-103 (327)
362 PF00006 ATP-synt_ab: ATP synt 96.6 0.0061 1.3E-07 48.7 6.0 85 26-118 16-115 (215)
363 PRK09302 circadian clock prote 96.6 0.011 2.5E-07 53.5 8.5 100 12-118 260-373 (509)
364 COG0529 CysC Adenylylsulfate k 96.6 0.0038 8.2E-08 47.8 4.5 30 24-55 22-51 (197)
365 KOG1532 GTPase XAB1, interacts 96.6 0.0016 3.5E-08 53.2 2.7 26 23-48 17-42 (366)
366 PF06068 TIP49: TIP49 C-termin 96.6 0.0085 1.9E-07 51.3 7.1 51 3-55 25-78 (398)
367 PF01078 Mg_chelatase: Magnesi 96.6 0.0049 1.1E-07 48.7 5.3 41 2-46 3-43 (206)
368 TIGR03522 GldA_ABC_ATP gliding 96.6 0.026 5.7E-07 47.5 10.1 24 24-47 27-50 (301)
369 PRK00300 gmk guanylate kinase; 96.6 0.0021 4.6E-08 50.8 3.3 24 25-48 5-28 (205)
370 COG0003 ArsA Predicted ATPase 96.6 0.0041 8.9E-08 52.7 5.1 47 25-73 2-48 (322)
371 cd00544 CobU Adenosylcobinamid 96.5 0.013 2.8E-07 45.1 7.3 45 28-78 2-46 (169)
372 PF06309 Torsin: Torsin; Inte 96.5 0.0043 9.2E-08 45.0 4.4 45 3-47 26-75 (127)
373 PRK08149 ATP synthase SpaL; Va 96.5 0.0098 2.1E-07 52.3 7.4 89 24-118 150-251 (428)
374 TIGR00382 clpX endopeptidase C 96.5 0.0043 9.2E-08 54.4 5.2 46 2-47 77-138 (413)
375 PRK06090 DNA polymerase III su 96.5 0.065 1.4E-06 45.5 12.2 164 10-185 11-201 (319)
376 PRK10463 hydrogenase nickel in 96.5 0.0063 1.4E-07 50.7 6.0 30 24-55 103-132 (290)
377 PRK10875 recD exonuclease V su 96.5 0.019 4.1E-07 53.0 9.6 23 25-47 167-189 (615)
378 PRK13407 bchI magnesium chelat 96.5 0.003 6.4E-08 53.9 4.1 43 3-47 9-51 (334)
379 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.015 3.2E-07 45.9 7.9 25 24-48 25-49 (200)
380 PRK12597 F0F1 ATP synthase sub 96.5 0.0068 1.5E-07 53.8 6.4 92 24-118 142-247 (461)
381 PRK04182 cytidylate kinase; Pr 96.5 0.0049 1.1E-07 47.4 5.0 21 27-47 2-22 (180)
382 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0055 1.2E-07 46.3 5.2 113 25-148 25-142 (157)
383 PF02374 ArsA_ATPase: Anion-tr 96.5 0.0031 6.8E-08 53.2 4.1 46 26-73 2-47 (305)
384 TIGR00750 lao LAO/AO transport 96.5 0.0044 9.5E-08 52.2 5.0 37 11-47 20-56 (300)
385 TIGR02030 BchI-ChlI magnesium 96.5 0.0041 8.9E-08 53.2 4.8 43 3-47 5-47 (337)
386 PHA02774 E1; Provisional 96.5 0.021 4.5E-07 51.9 9.4 47 12-63 422-468 (613)
387 cd01672 TMPK Thymidine monopho 96.5 0.0063 1.4E-07 47.5 5.6 21 27-47 2-22 (200)
388 PRK15453 phosphoribulokinase; 96.5 0.014 2.9E-07 48.5 7.6 24 24-47 4-27 (290)
389 cd02020 CMPK Cytidine monophos 96.5 0.0018 3.9E-08 48.1 2.4 21 27-47 1-21 (147)
390 PF13481 AAA_25: AAA domain; P 96.5 0.016 3.4E-07 45.3 7.8 42 25-66 32-81 (193)
391 PRK10416 signal recognition pa 96.5 0.017 3.8E-07 49.0 8.5 24 24-47 113-136 (318)
392 PRK05922 type III secretion sy 96.5 0.017 3.7E-07 50.9 8.6 89 24-118 156-257 (434)
393 PRK06964 DNA polymerase III su 96.5 0.035 7.7E-07 47.6 10.3 43 107-149 131-176 (342)
394 cd01132 F1_ATPase_alpha F1 ATP 96.5 0.0082 1.8E-07 49.6 6.2 95 24-126 68-180 (274)
395 PRK05800 cobU adenosylcobinami 96.5 0.019 4.1E-07 44.2 7.8 82 27-117 3-85 (170)
396 PRK12339 2-phosphoglycerate ki 96.5 0.0027 5.9E-08 50.1 3.3 23 25-47 3-25 (197)
397 COG1223 Predicted ATPase (AAA+ 96.5 0.013 2.8E-07 47.8 7.1 46 3-48 122-174 (368)
398 CHL00081 chlI Mg-protoporyphyr 96.4 0.0032 7E-08 53.9 3.9 43 3-47 18-60 (350)
399 PRK05917 DNA polymerase III su 96.4 0.086 1.9E-06 44.1 12.2 150 10-179 5-175 (290)
400 cd01136 ATPase_flagellum-secre 96.4 0.016 3.5E-07 49.2 8.0 87 24-118 68-169 (326)
401 KOG0739 AAA+-type ATPase [Post 96.4 0.017 3.7E-07 48.1 7.8 91 3-118 134-235 (439)
402 PRK10078 ribose 1,5-bisphospho 96.4 0.0027 5.8E-08 49.6 3.1 22 26-47 3-24 (186)
403 TIGR00041 DTMP_kinase thymidyl 96.4 0.0079 1.7E-07 47.1 5.8 22 26-47 4-25 (195)
404 PRK13949 shikimate kinase; Pro 96.4 0.0026 5.6E-08 48.9 2.9 21 27-47 3-23 (169)
405 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.018 4E-07 46.3 7.9 24 24-47 30-53 (222)
406 PRK13946 shikimate kinase; Pro 96.4 0.0027 6E-08 49.5 3.0 23 25-47 10-32 (184)
407 cd02029 PRK_like Phosphoribulo 96.4 0.0073 1.6E-07 49.7 5.5 21 27-47 1-21 (277)
408 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0074 1.6E-07 52.1 5.8 104 24-148 61-169 (362)
409 KOG0736 Peroxisome assembly fa 96.4 0.017 3.7E-07 53.7 8.3 91 5-119 675-775 (953)
410 PF13245 AAA_19: Part of AAA d 96.4 0.0035 7.6E-08 41.4 3.0 22 26-47 11-32 (76)
411 PRK13948 shikimate kinase; Pro 96.4 0.0031 6.8E-08 49.1 3.2 24 24-47 9-32 (182)
412 PRK10751 molybdopterin-guanine 96.4 0.0031 6.7E-08 48.6 3.1 24 24-47 5-28 (173)
413 TIGR01313 therm_gnt_kin carboh 96.4 0.0021 4.5E-08 48.9 2.2 20 28-47 1-20 (163)
414 cd00820 PEPCK_HprK Phosphoenol 96.4 0.004 8.6E-08 44.0 3.4 22 25-46 15-36 (107)
415 PRK06936 type III secretion sy 96.4 0.014 3.1E-07 51.4 7.6 87 24-118 161-262 (439)
416 PRK14527 adenylate kinase; Pro 96.4 0.003 6.5E-08 49.5 3.1 24 24-47 5-28 (191)
417 TIGR01447 recD exodeoxyribonuc 96.4 0.021 4.5E-07 52.6 9.0 23 25-47 160-182 (586)
418 COG1124 DppF ABC-type dipeptid 96.4 0.0048 1E-07 49.6 4.2 24 24-47 32-55 (252)
419 PRK08927 fliI flagellum-specif 96.4 0.012 2.6E-07 51.9 7.1 89 24-118 157-258 (442)
420 COG1428 Deoxynucleoside kinase 96.4 0.0028 6.2E-08 49.9 2.8 23 25-47 4-26 (216)
421 TIGR03575 selen_PSTK_euk L-ser 96.4 0.012 2.5E-07 50.4 6.8 20 28-47 2-21 (340)
422 TIGR02915 PEP_resp_reg putativ 96.4 0.027 5.9E-07 50.0 9.5 45 3-47 140-184 (445)
423 PRK15115 response regulator Gl 96.4 0.037 8E-07 49.2 10.3 45 3-47 135-179 (444)
424 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.01 2.2E-07 51.2 6.5 94 25-126 134-230 (358)
425 PF03205 MobB: Molybdopterin g 96.4 0.0052 1.1E-07 45.7 4.1 38 26-65 1-39 (140)
426 PF08477 Miro: Miro-like prote 96.3 0.003 6.5E-08 45.1 2.7 22 28-49 2-23 (119)
427 TIGR03305 alt_F1F0_F1_bet alte 96.3 0.0083 1.8E-07 53.0 5.8 92 24-118 137-242 (449)
428 cd01134 V_A-ATPase_A V/A-type 96.3 0.028 6E-07 48.1 8.7 49 24-76 156-205 (369)
429 cd00464 SK Shikimate kinase (S 96.3 0.0029 6.2E-08 47.5 2.6 20 28-47 2-21 (154)
430 PRK14530 adenylate kinase; Pro 96.3 0.0029 6.2E-08 50.6 2.8 21 27-47 5-25 (215)
431 TIGR03498 FliI_clade3 flagella 96.3 0.018 4E-07 50.6 8.0 91 24-119 139-241 (418)
432 PF06745 KaiC: KaiC; InterPro 96.3 0.0061 1.3E-07 49.0 4.7 96 17-118 11-125 (226)
433 PF03215 Rad17: Rad17 cell cyc 96.3 0.0048 1E-07 55.8 4.4 53 6-62 23-78 (519)
434 cd01125 repA Hexameric Replica 96.3 0.018 3.8E-07 46.8 7.4 21 27-47 3-23 (239)
435 KOG1970 Checkpoint RAD17-RFC c 96.3 0.029 6.4E-07 50.2 9.0 39 9-47 89-132 (634)
436 PF02456 Adeno_IVa2: Adenoviru 96.3 0.067 1.5E-06 44.7 10.5 160 24-185 86-294 (369)
437 TIGR02533 type_II_gspE general 96.3 0.0072 1.6E-07 54.3 5.4 98 11-125 231-328 (486)
438 PLN02348 phosphoribulokinase 96.3 0.0059 1.3E-07 52.9 4.7 25 23-47 47-71 (395)
439 smart00534 MUTSac ATPase domai 96.3 0.027 5.9E-07 43.9 8.1 20 27-46 1-20 (185)
440 PRK09280 F0F1 ATP synthase sub 96.3 0.011 2.5E-07 52.3 6.5 92 24-118 143-248 (463)
441 PLN02200 adenylate kinase fami 96.3 0.0037 8E-08 50.7 3.2 24 24-47 42-65 (234)
442 PF06414 Zeta_toxin: Zeta toxi 96.3 0.0033 7.1E-08 49.7 2.9 103 23-132 13-117 (199)
443 PRK09099 type III secretion sy 96.3 0.014 3E-07 51.6 7.0 90 24-118 162-263 (441)
444 COG3640 CooC CO dehydrogenase 96.3 0.0074 1.6E-07 48.4 4.6 41 27-68 2-42 (255)
445 PRK05057 aroK shikimate kinase 96.3 0.0041 8.9E-08 48.0 3.2 23 25-47 4-26 (172)
446 PRK11174 cysteine/glutathione 96.2 0.043 9.2E-07 50.7 10.3 24 24-47 375-398 (588)
447 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.018 4E-07 46.2 7.0 58 14-75 5-62 (224)
448 PTZ00185 ATPase alpha subunit; 96.2 0.029 6.3E-07 50.3 8.6 94 24-119 188-300 (574)
449 TIGR01287 nifH nitrogenase iro 96.2 0.0045 9.7E-08 51.4 3.5 22 26-47 1-22 (275)
450 PF03266 NTPase_1: NTPase; In 96.2 0.0034 7.3E-08 48.2 2.6 20 28-47 2-21 (168)
451 TIGR01448 recD_rel helicase, p 96.2 0.028 6E-07 53.1 9.1 22 26-47 339-360 (720)
452 PRK07721 fliI flagellum-specif 96.2 0.024 5.1E-07 50.3 8.1 24 24-47 157-180 (438)
453 PF05970 PIF1: PIF1-like helic 96.2 0.01 2.2E-07 51.5 5.7 34 12-47 11-44 (364)
454 PRK06761 hypothetical protein; 96.2 0.009 1.9E-07 49.7 5.1 23 26-48 4-26 (282)
455 COG1936 Predicted nucleotide k 96.2 0.0041 8.9E-08 47.4 2.8 20 27-46 2-21 (180)
456 KOG0728 26S proteasome regulat 96.2 0.033 7.2E-07 45.3 8.1 42 6-47 151-203 (404)
457 KOG0731 AAA+-type ATPase conta 96.2 0.005 1.1E-07 57.4 3.9 47 3-49 312-368 (774)
458 PRK13768 GTPase; Provisional 96.2 0.0068 1.5E-07 49.8 4.3 22 26-47 3-24 (253)
459 PRK13657 cyclic beta-1,2-gluca 96.2 0.024 5.3E-07 52.3 8.5 24 24-47 360-383 (588)
460 TIGR00073 hypB hydrogenase acc 96.2 0.0085 1.8E-07 47.6 4.8 24 24-47 21-44 (207)
461 PRK13975 thymidylate kinase; P 96.2 0.0042 9.2E-08 48.7 3.0 22 26-47 3-24 (196)
462 PRK00698 tmk thymidylate kinas 96.2 0.013 2.8E-07 46.2 5.8 23 25-47 3-25 (205)
463 smart00072 GuKc Guanylate kina 96.2 0.0057 1.2E-07 47.6 3.7 23 25-47 2-24 (184)
464 TIGR02768 TraA_Ti Ti-type conj 96.2 0.029 6.3E-07 53.2 8.9 22 26-47 369-390 (744)
465 PRK08356 hypothetical protein; 96.2 0.0058 1.2E-07 48.1 3.6 21 25-45 5-25 (195)
466 PF00437 T2SE: Type II/IV secr 96.2 0.031 6.8E-07 46.2 8.2 113 12-144 114-230 (270)
467 PRK10646 ADP-binding protein; 96.2 0.01 2.2E-07 44.7 4.7 41 8-48 11-51 (153)
468 PF13521 AAA_28: AAA domain; P 96.1 0.0036 7.8E-08 47.7 2.3 20 28-47 2-21 (163)
469 TIGR02525 plasmid_TraJ plasmid 96.1 0.019 4.1E-07 49.8 7.0 95 26-129 150-246 (372)
470 PF02367 UPF0079: Uncharacteri 96.1 0.0088 1.9E-07 43.4 4.2 23 25-47 15-37 (123)
471 PRK11131 ATP-dependent RNA hel 96.1 0.042 9.2E-07 54.5 10.0 68 9-82 77-144 (1294)
472 TIGR00958 3a01208 Conjugate Tr 96.1 0.041 8.9E-07 52.0 9.8 24 24-47 506-529 (711)
473 PRK14531 adenylate kinase; Pro 96.1 0.0046 1E-07 48.1 2.9 22 26-47 3-24 (183)
474 COG1126 GlnQ ABC-type polar am 96.1 0.0084 1.8E-07 47.5 4.3 24 24-47 27-50 (240)
475 TIGR03796 NHPM_micro_ABC1 NHPM 96.1 0.033 7.2E-07 52.6 9.2 24 24-47 504-527 (710)
476 PRK07594 type III secretion sy 96.1 0.027 5.8E-07 49.7 7.9 49 24-76 154-203 (433)
477 KOG0727 26S proteasome regulat 96.1 0.011 2.3E-07 48.1 5.0 48 6-55 159-217 (408)
478 PRK12678 transcription termina 96.1 0.0098 2.1E-07 53.9 5.1 24 24-47 415-438 (672)
479 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.049 1.1E-06 43.2 8.7 24 24-47 28-51 (204)
480 COG4639 Predicted kinase [Gene 96.1 0.018 3.8E-07 43.3 5.7 23 25-47 2-24 (168)
481 PRK14532 adenylate kinase; Pro 96.1 0.0044 9.4E-08 48.4 2.7 20 28-47 3-22 (188)
482 cd01428 ADK Adenylate kinase ( 96.1 0.0042 9.2E-08 48.5 2.6 20 28-47 2-21 (194)
483 PRK08699 DNA polymerase III su 96.1 0.065 1.4E-06 45.7 9.9 24 24-47 20-43 (325)
484 COG0488 Uup ATPase components 96.1 0.058 1.3E-06 49.0 10.1 122 24-149 347-499 (530)
485 PHA02530 pseT polynucleotide k 96.1 0.005 1.1E-07 51.7 3.2 22 26-47 3-24 (300)
486 cd00984 DnaB_C DnaB helicase C 96.1 0.023 4.9E-07 46.1 6.9 51 24-77 12-62 (242)
487 cd02040 NifH NifH gene encodes 96.1 0.0084 1.8E-07 49.5 4.5 39 26-66 2-40 (270)
488 PF03029 ATP_bind_1: Conserved 96.1 0.0051 1.1E-07 50.0 3.1 34 30-65 1-34 (238)
489 PRK11160 cysteine/glutathione 96.1 0.046 1E-06 50.4 9.6 24 24-47 365-388 (574)
490 COG2274 SunT ABC-type bacterio 96.1 0.031 6.8E-07 52.5 8.5 24 24-47 498-521 (709)
491 TIGR02173 cyt_kin_arch cytidyl 96.1 0.0051 1.1E-07 47.0 2.9 21 27-47 2-22 (171)
492 TIGR01041 ATP_syn_B_arch ATP s 96.1 0.018 3.8E-07 51.2 6.6 93 24-118 140-248 (458)
493 KOG2859 DNA repair protein, me 96.1 0.13 2.8E-06 40.9 10.5 109 24-134 37-153 (293)
494 PRK09825 idnK D-gluconate kina 96.1 0.0052 1.1E-07 47.6 2.9 22 26-47 4-25 (176)
495 PRK13894 conjugal transfer ATP 96.1 0.088 1.9E-06 44.8 10.5 90 26-127 149-238 (319)
496 TIGR03496 FliI_clade1 flagella 96.1 0.023 5E-07 49.9 7.1 24 24-47 136-159 (411)
497 TIGR03574 selen_PSTK L-seryl-t 96.0 0.004 8.6E-08 51.0 2.3 20 28-47 2-21 (249)
498 COG3840 ThiQ ABC-type thiamine 96.0 0.075 1.6E-06 41.3 8.9 24 24-47 24-47 (231)
499 COG1224 TIP49 DNA helicase TIP 96.0 0.012 2.6E-07 50.1 5.0 46 3-48 40-88 (450)
500 cd01852 AIG1 AIG1 (avrRpt2-ind 96.0 0.052 1.1E-06 42.6 8.5 22 27-48 2-23 (196)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-47 Score=353.87 Aligned_cols=235 Identities=28% Similarity=0.398 Sum_probs=209.6
Q ss_pred ccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcc-cccccceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 045180 5 VGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNY-VKYYFDCHAWVEESLLYDADQILYDIIKFVMPS 83 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 83 (243)
||.++.++.+.+.|..++ .++++|+||||+||||||++++++.. ++++|+.++||.+|+.++...+..+|+..++..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 999999999999999985 38999999999999999999999987 999999999999999999999999999999986
Q ss_pred CCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccccccc-cc---------
Q 045180 84 SRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIVAS-FQ--------- 153 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~-~~--------- 153 (243)
.........+++. ..+.+.|.++|+||||||+|+..+|+.+..++|...+||+|++|||++.|+.. +.
T Consensus 239 ~~~~~~~~~~~~~--~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 239 DEEWEDKEEDELA--SKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred CcccchhhHHHHH--HHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 6543344447888 99999999999999999999999999999999999889999999999999887 33
Q ss_pred ---------ccC-----CCCCChhhhhhhhHHHHhcCCchhHHHHH-----------HHHHHHHhhHHhhcCC-----ch
Q 045180 154 ---------FEN-----GENIGLDFLSTGGPLRVTYQGWPFHILYH-----------ESISLKENIEEALDEP-----RG 203 (243)
Q Consensus 154 ---------f~~-----~~~~~~~~~~~~~~i~~~c~glPlai~~~-----------~w~~~~~~l~~~~~~~-----~~ 203 (243)
|.+ .....+.++++|++++++|+|+|||++++ +|.++.+.+.+....+ +.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 444 12333448999999999999999999999 8999999998773322 22
Q ss_pred ---hHHhhhhhchhhHHHHHhHhhcCCCCCeechhhhhhcccC
Q 045180 204 ---LQVLAYCMLTFYLKLCCLYLSVFPVHFEISTKQLYQTWIA 243 (243)
Q Consensus 204 ---~l~~s~~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~lW~A 243 (243)
++.+||+.||++.|.||+|||+||+|+.|+++.||..|||
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWia 439 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIA 439 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHh
Confidence 3999999999889999999999999999999999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.1e-45 Score=307.07 Aligned_cols=235 Identities=28% Similarity=0.399 Sum_probs=190.6
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc
Q 045180 7 LDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRL 86 (243)
Q Consensus 7 R~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 86 (243)
||.++++|.+.|....++.++|+|+|+||+|||+||.+++++..++.+|+.++|++++...+...++..|+..++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999656899999999999999999999999666899999999999999988899999999999988543
Q ss_pred c-cccChhhhhHHHHHHHHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccccccccc------------
Q 045180 87 S-EIMEESSEMKKIILHEYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIVASFQ------------ 153 (243)
Q Consensus 87 ~-~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~------------ 153 (243)
. ...+.++.. ..+++.++++++||||||||+...|+.+...++....+++||+|||+..++....
T Consensus 81 ~~~~~~~~~~~--~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQ--DQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHH--HHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccc--ccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 345667788 9999999999999999999999999998888887777999999999988765332
Q ss_pred -------ccC-----CCCCChhhhhhhhHHHHhcCCchhHHHHH-----------HHHHHHHhhHHhhcCC----chh--
Q 045180 154 -------FEN-----GENIGLDFLSTGGPLRVTYQGWPFHILYH-----------ESISLKENIEEALDEP----RGL-- 204 (243)
Q Consensus 154 -------f~~-----~~~~~~~~~~~~~~i~~~c~glPlai~~~-----------~w~~~~~~l~~~~~~~----~~~-- 204 (243)
|.+ .....+...+.+++|+++|+|+||||+++ +|..+++++.....+. ..+
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 333 11234556778999999999999999998 8999998887776532 233
Q ss_pred -HHhhhhhchhhHHHHHhHhhcCCCCCeechhhhhhcccC
Q 045180 205 -QVLAYCMLTFYLKLCCLYLSVFPVHFEISTKQLYQTWIA 243 (243)
Q Consensus 205 -l~~s~~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~lW~A 243 (243)
+.+||+.||++.|+||+|||+||+++.|+.+.|+++|+|
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 999999999999999999999999999999999999987
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-32 Score=264.03 Aligned_cols=224 Identities=15% Similarity=0.215 Sum_probs=171.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe---CCC-----------C
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE---SLL-----------Y 67 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~---~~~-----------~ 67 (243)
+++|||++.++++..+|....+..++|+|+||||+||||||+++|+ ++..+|++.+|+.. ... .
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccccccccc
Confidence 4699999999999999977666789999999999999999999999 78889998888742 110 0
Q ss_pred C-HHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 68 D-ADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 68 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
+ ...+...++..+..... ... ... ..+++.++++|+||||||||+.+.|+.+.......++|++||||||+.
T Consensus 262 ~~~~~l~~~~l~~il~~~~----~~~-~~~--~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKD----IKI-YHL--GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred chhHHHHHHHHHHHhCCCC----ccc-CCH--HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 1 12234444444433221 011 113 567788999999999999999999999887666667899999999999
Q ss_pred ccccccc------------------ccC----CCCCChhhhhhhhHHHHhcCCchhHHHHH----------HHHHHHHhh
Q 045180 147 EIVASFQ------------------FEN----GENIGLDFLSTGGPLRVTYQGWPFHILYH----------ESISLKENI 194 (243)
Q Consensus 147 ~~~~~~~------------------f~~----~~~~~~~~~~~~~~i~~~c~glPlai~~~----------~w~~~~~~l 194 (243)
.++.... |.. ...+++...+++++|+++|+|+||||+++ +|..+++++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L 414 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRL 414 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765331 433 22234567889999999999999999999 999999998
Q ss_pred HHhhcCC-chhHHhhhhhchh-hHHHHHhHhhcCCCCCeech
Q 045180 195 EEALDEP-RGLQVLAYCMLTF-YLKLCCLYLSVFPVHFEIST 234 (243)
Q Consensus 195 ~~~~~~~-~~~l~~s~~~L~~-~~k~~f~~ls~fp~~~~i~~ 234 (243)
....+.. ..+|++||+.|++ ..|.||+++|+|+.+..++.
T Consensus 415 ~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~ 456 (1153)
T PLN03210 415 RNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND 456 (1153)
T ss_pred HhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH
Confidence 8755432 2349999999987 49999999999998876653
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=5.9e-12 Score=109.90 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF--DCHAWVEESLLYDADQILYDII 77 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~ 77 (243)
+.|+||++++++|...|... +.....+.|+|++|+|||++++.+++ ...... -..++++.....+...++..++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 56999999999999998543 23456688999999999999999998 443322 2456777777777889999999
Q ss_pred HHhCCCCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc
Q 045180 78 KFVMPSSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI 120 (243)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~ 120 (243)
.++..........+.+++. ..+.+.+. ++..+||+|+++..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELF--DKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHhcCCCCCCCCCCHHHHH--HHHHHHHHhcCCEEEEEECCHhHh
Confidence 9997632211233456666 77777764 45689999999753
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=9.3e-11 Score=112.45 Aligned_cols=211 Identities=13% Similarity=0.099 Sum_probs=125.0
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCC
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL-YDADQILYDIIKFVMP 82 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 82 (243)
+|-|+.- .+.|... ...+++.|+|++|.||||++.++.+ . ++.+.|+++... .+...+...++..+..
T Consensus 16 ~~~R~rl----~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~ 84 (903)
T PRK04841 16 TVVRERL----LAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYSLDESDNQPERFASYLIAALQQ 84 (903)
T ss_pred cCcchHH----HHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEecCcccCCHHHHHHHHHHHHHH
Confidence 4445544 4444433 2568999999999999999998775 2 226889998654 4566777777777742
Q ss_pred CCCcc-----------cccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCcc--h-hhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 83 SSRLS-----------EIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRIS--V-WDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 83 ~~~~~-----------~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~--~-~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
..... ...+...+. ..+...+. +.+++||+||+...+ . .+.+...+.....+.++|+|||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 85 ATNGHCSKSEALAQKRQYASLSSLF--AQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred hcCcccchhhhhhccCCcCCHHHHH--HHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 22110 001222233 33444443 678999999996542 2 234444444455677899999984
Q ss_pred ccccccc----------------ccC--------CCCCChhhhhhhhHHHHhcCCchhHHHHH--HHHHHH---HhhHHh
Q 045180 147 EIVASFQ----------------FEN--------GENIGLDFLSTGGPLRVTYQGWPFHILYH--ESISLK---ENIEEA 197 (243)
Q Consensus 147 ~~~~~~~----------------f~~--------~~~~~~~~~~~~~~i~~~c~glPlai~~~--~w~~~~---~~l~~~ 197 (243)
....... |.. .....+.....+..+.+.|+|+|+++.++ .+..-- ......
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~ 242 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARR 242 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHh
Confidence 2211100 222 01111223445788999999999999887 221110 000111
Q ss_pred hc--CCchh----HHhhhhhchhhHHHHHhHhhcCC
Q 045180 198 LD--EPRGL----QVLAYCMLTFYLKLCCLYLSVFP 227 (243)
Q Consensus 198 ~~--~~~~~----l~~s~~~L~~~~k~~f~~ls~fp 227 (243)
.. ....+ ....++.||++.+..++..|+++
T Consensus 243 ~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~ 278 (903)
T PRK04841 243 LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR 278 (903)
T ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 11 11223 34458899999999999999987
No 6
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.30 E-value=5e-10 Score=96.77 Aligned_cols=114 Identities=21% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc------ceeEEEEeCCCCCHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF------DCHAWVEESLLYDADQIL 73 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~ 73 (243)
+.++||++++++|...|... +.....+.|+|++|+|||++++.+++. ..... -..+|++.....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 46999999999999998752 234567899999999999999999873 32211 145677877777788899
Q ss_pred HHHHHHhC---CCCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc
Q 045180 74 YDIIKFVM---PSSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI 120 (243)
Q Consensus 74 ~~i~~~l~---~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~ 120 (243)
..|+.++. ...+. ...+..+.. ..+.+.+. +++.+||||+++..
T Consensus 93 ~~i~~~l~~~~~~~~~-~~~~~~~~~--~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 93 VELANQLRGSGEEVPT-TGLSTSEVF--RRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHhhcCCCCCC-CCCCHHHHH--HHHHHHHHhcCCeEEEEECchhhh
Confidence 99999984 22221 222344555 56666663 56789999999755
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=9.7e-11 Score=94.36 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=41.9
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
|+||++++++|.+.+..+ ..+.+.|+|+.|+|||+|++++.+ ..++.-..++|+.....
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~--~~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFIN--ELKEKGYKVVYIDFLEE 59 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHH--HCT--EECCCHHCCTTB
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHH--HhhhcCCcEEEEecccc
Confidence 799999999999999875 357899999999999999999988 44332224445544333
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.11 E-value=4.5e-09 Score=86.95 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=88.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH-
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH- 102 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~- 102 (243)
+...+.|+|++|+||||+++.+++.... ..+ ...|+ .....+..+++..|+..++.+.. . .+..... ..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~-~~~~~~~--~~l~~ 113 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--G-RDKAALL--RELED 113 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--C-CCHHHHH--HHHHH
Confidence 3568999999999999999999884321 111 22233 33345778899999998877643 1 2222222 3333
Q ss_pred ---HHh-CCCeEEEEEeCCCCcc--hhhHHHhhCC---CCCCCcEEEEeeCcccc---cc-c-----------cc---c-
Q 045180 103 ---EYL-MTKRYLIVLDNVWRIS--VWDVIREILP---DSQNGSRVLITLSRIEI---VA-S-----------FQ---F- 154 (243)
Q Consensus 103 ---~~l-~~~~~LlvlDdv~~~~--~~~~l~~~l~---~~~~~~~iiiTtR~~~~---~~-~-----------~~---f- 154 (243)
... .+++.++|+|+++... .++.+..... .......|++|...... .. . .. |
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 322 5778999999998753 4555543221 11222344555442210 00 0 00 1
Q ss_pred ------------cC-CCC-CChhhhhhhhHHHHhcCCchhHHHHH
Q 045180 155 ------------EN-GEN-IGLDFLSTGGPLRVTYQGWPFHILYH 185 (243)
Q Consensus 155 ------------~~-~~~-~~~~~~~~~~~i~~~c~glPlai~~~ 185 (243)
.. +.. ...-..+..+.|.+.++|.|..|..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 10 111 11223467888999999999998777
No 9
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.10 E-value=2.2e-10 Score=84.24 Aligned_cols=114 Identities=13% Similarity=0.143 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccc-----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-----FDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKK 98 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 98 (243)
+.+.+.|+|.+|+|||+++.++.+ ..... -..++|+.+....+...+...++..++.... ...+..++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~-- 76 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELR-- 76 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHH--
T ss_pred CCcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHH--
Confidence 357899999999999999999988 33321 3466799988887999999999999998876 345667777
Q ss_pred HHHHHHhCCCe-EEEEEeCCCCc---chhhHHHhhCCCCCCCcEEEEeeCc
Q 045180 99 IILHEYLMTKR-YLIVLDNVWRI---SVWDVIREILPDSQNGSRVLITLSR 145 (243)
Q Consensus 99 ~~l~~~l~~~~-~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~iiiTtR~ 145 (243)
+.+.+.+...+ .+||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 78888886554 59999999644 23445544443 556777777665
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.05 E-value=7.1e-09 Score=94.97 Aligned_cols=211 Identities=17% Similarity=0.118 Sum_probs=133.9
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc---
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS--- 87 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--- 87 (243)
.+|.+.|.... ..+.+.|..|+|.||||++.+... +. ..-..+.|.+++... +...++..++..++.-.+..
T Consensus 25 ~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~--~~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE--LA-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH--hc-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 34555565553 579999999999999999998765 22 223478999987754 67888899988887443321
Q ss_pred --------cccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc---chhhHHHhhCCCCCCCcEEEEeeCccccccccc-
Q 045180 88 --------EIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI---SVWDVIREILPDSQNGSRVLITLSRIEIVASFQ- 153 (243)
Q Consensus 88 --------~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~- 153 (243)
...+...+. ..+..-+. .++..+||||..-. .--+.+...+...+.+-.+++|||+..-.....
T Consensus 101 a~~l~q~~~~~~l~~l~--~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~l 178 (894)
T COG2909 101 AQTLLQKHQYVSLESLL--SSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARL 178 (894)
T ss_pred HHHHHHhcccccHHHHH--HHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccce
Confidence 122334455 55555443 35889999998533 223344444455566889999999975443332
Q ss_pred ---------------ccC--------CCCCChhhhhhhhHHHHhcCCchhHHHHH-HHHH---HHHhhHHhhcCC-----
Q 045180 154 ---------------FEN--------GENIGLDFLSTGGPLRVTYQGWPFHILYH-ESIS---LKENIEEALDEP----- 201 (243)
Q Consensus 154 ---------------f~~--------~~~~~~~~~~~~~~i~~~c~glPlai~~~-~w~~---~~~~l~~~~~~~----- 201 (243)
|.. .....+-....++.+.+..+|.+-|+.++ -|.+ -.+.....++..
T Consensus 179 Rlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~ 258 (894)
T COG2909 179 RLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLS 258 (894)
T ss_pred eehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHH
Confidence 333 11112333456788899999999999888 2222 001111111111
Q ss_pred chhHHhhhhhchhhHHHHHhHhhcCCC
Q 045180 202 RGLQVLAYCMLTFYLKLCCLYLSVFPV 228 (243)
Q Consensus 202 ~~~l~~s~~~L~~~~k~~f~~ls~fp~ 228 (243)
+.+.+--++.||+++|..++-+|+++.
T Consensus 259 dYL~eeVld~Lp~~l~~FLl~~svl~~ 285 (894)
T COG2909 259 DYLVEEVLDRLPPELRDFLLQTSVLSR 285 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhHHH
Confidence 112666789999999999999998763
No 11
>PF05729 NACHT: NACHT domain
Probab=99.02 E-value=8.8e-10 Score=84.10 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=66.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHH---HHHHHHHHHhCCCCCcccccChhhhhHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYY----FDCHAWVEESLLYDAD---QILYDIIKFVMPSSRLSEIMEESSEMKK 98 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 98 (243)
|++.|+|.+|+|||++++.++........ +...+|.......... .+...|......... ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--------~~~-- 70 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA--------PIE-- 70 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh--------hhH--
Confidence 57899999999999999998873222221 4456677665543322 333344333332211 111
Q ss_pred HHHHHH-hCCCeEEEEEeCCCCcch---------hh-HHHhhCCC-CCCCcEEEEeeCcccc
Q 045180 99 IILHEY-LMTKRYLIVLDNVWRISV---------WD-VIREILPD-SQNGSRVLITLSRIEI 148 (243)
Q Consensus 99 ~~l~~~-l~~~~~LlvlDdv~~~~~---------~~-~l~~~l~~-~~~~~~iiiTtR~~~~ 148 (243)
..+... ...+++++|+|++++... +. .+...++. ..+++++++|||....
T Consensus 71 ~~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 71 ELLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 111122 256899999999975422 11 23333433 3568999999998766
No 12
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.00 E-value=6.3e-09 Score=77.21 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=72.0
Q ss_pred ccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 045180 5 VGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSS 84 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 84 (243)
+|++..+..+...+... ..+.+.|+|++|+|||++++.+++ .....-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 47889999999988774 356899999999999999999998 332222345666554432211111110000
Q ss_pred CcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc--chhhHHH---hhCCCC---CCCcEEEEeeCccc
Q 045180 85 RLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI--SVWDVIR---EILPDS---QNGSRVLITLSRIE 147 (243)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~---~~l~~~---~~~~~iiiTtR~~~ 147 (243)
... .........++.++++||++.. .....+. ..+... ..+..+|+||....
T Consensus 72 ---------~~~--~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVR--LLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHh--HHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000 1122223456789999999753 2222222 222221 35778888887653
No 13
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.96 E-value=2.5e-09 Score=90.22 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG---PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|+++.+++|...+... ......+.++|++|+|||+||+.+++
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 36999999999999988642 22456688999999999999999988
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.90 E-value=3.3e-08 Score=84.32 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHHHhc---CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE---GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++|+|+++.++.+...+.. .......+.++|++|+|||++|+.+++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHH
Confidence 3699999999999888764 233466789999999999999999988
No 15
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.88 E-value=4.7e-09 Score=81.68 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=33.9
Q ss_pred CcccchhhHHHHHHHHhc-CCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 3 DTVGLDNKMEELLDLLTE-GPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~-~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
+||||+++++++...|.. .....+.+.|+|++|+|||+|..+++. ++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 589999999999999942 233578999999999999999999888 55444
No 16
>PF13173 AAA_14: AAA domain
Probab=98.87 E-value=7.2e-09 Score=76.17 Aligned_cols=101 Identities=12% Similarity=0.172 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
.+++.|.|+.|+||||++.+++++ .. ....+++++.......... ..+ .. +.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~~~~~~------------------~~~-~~--~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFDDPRDRRLA------------------DPD-LL--EYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccCCHHHHHHh------------------hhh-hH--HHHHHh
Confidence 468999999999999999998873 22 3345677766543221100 000 22 444444
Q ss_pred hCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccccc
Q 045180 105 LMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIV 149 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~ 149 (243)
...++.++++|++.....|......+.+...+.+|++|+.+....
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 445778999999988888887777776655678999999876554
No 17
>PTZ00202 tuzin; Provisional
Probab=98.85 E-value=4.4e-08 Score=84.65 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=81.9
Q ss_pred CCcccchhhHHHHHHHHhcCC-CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 045180 2 RDTVGLDNKMEELLDLLTEGP-PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFV 80 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 80 (243)
+.|+||+.++.+|...|...+ ..++++.|.|++|+|||||++.+... .. + ..+.++.. +..+++..++.+|
T Consensus 262 ~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~--~-~qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG--M-PAVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred cCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC--c-eEEEECCC---CHHHHHHHHHHHc
Confidence 579999999999999997542 34579999999999999999998873 32 2 23333332 6799999999999
Q ss_pred CCCCCcccccChhhhhHHHHHHHHh-----C-CCeEEEEEeCCCCcch----hhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 81 MPSSRLSEIMEESSEMKKIILHEYL-----M-TKRYLIVLDNVWRISV----WDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlvlDdv~~~~~----~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
|.+.. ....++. ..+.+.+ . +++.+||+-= .+.+. +++.... .....-|+|++.---+
T Consensus 334 GV~p~----~~k~dLL--rqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~l-a~drr~ch~v~evple 401 (550)
T PTZ00202 334 GVPNV----EACGDLL--DFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVAL-ACDRRLCHVVIEVPLE 401 (550)
T ss_pred CCCCc----ccHHHHH--HHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHH-HccchhheeeeeehHh
Confidence 97432 2223444 4444444 2 5666666632 22222 2332222 2223357777765444
No 18
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.1e-07 Score=79.05 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=87.2
Q ss_pred CCcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD--CHAWVEESLLYDADQILYDII 77 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~ 77 (243)
+.+.+|+++++++...|... +..+.-+.|+|.+|+|||+.++.+++ ++..... .++++++....+..+++..|+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34789999999999988753 22344589999999999999999998 6655433 268999999899999999999
Q ss_pred HHhCCCCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc
Q 045180 78 KFVMPSSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI 120 (243)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~ 120 (243)
++++.... ...+..+.. +.+.+.+. ++..++|||+++..
T Consensus 95 ~~~~~~p~--~g~~~~~~~--~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 95 NKLGKVPL--TGDSSLEIL--KRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHcCCCCC--CCCchHHHH--HHHHHHHHhcCCeEEEEEcchhhh
Confidence 99973332 344555666 77777774 47889999999654
No 19
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=3.5e-09 Score=89.98 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=130.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD-CHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
..+.+.++|.||+||||++-++.+ +...|. .+.++...+-.+...+.-.....++.+.. +-+... ..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~--~~~~ 82 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAV--DTLV 82 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHH--HHHH
Confidence 358999999999999999988776 566676 45566666666666666666666777653 112333 5677
Q ss_pred HHhCCCeEEEEEeCCCCc-chhhHHHhhCCCCCCCcEEEEeeCccccccccc---------cc-------C-------CC
Q 045180 103 EYLMTKRYLIVLDNVWRI-SVWDVIREILPDSQNGSRVLITLSRIEIVASFQ---------FE-------N-------GE 158 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~-~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~---------f~-------~-------~~ 158 (243)
....+++.++++||.... .....+.-.+..+...-.|+.|+|......... |. . .-
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 777899999999998443 222333333444444567888988864433222 11 1 00
Q ss_pred CCChhhhhhhhHHHHhcCCchhHHHHH-------HHHHHHHhhHHhhc----C-------Cchh---HHhhhhhchhhHH
Q 045180 159 NIGLDFLSTGGPLRVTYQGWPFHILYH-------ESISLKENIEEALD----E-------PRGL---QVLAYCMLTFYLK 217 (243)
Q Consensus 159 ~~~~~~~~~~~~i~~~c~glPlai~~~-------~w~~~~~~l~~~~~----~-------~~~~---l~~s~~~L~~~~k 217 (243)
.........+..|+++..|.|++|... .-..+.+.++.... . ...+ +.+||.-|....+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 011122345788999999999999988 22233333322211 1 1111 9999999999999
Q ss_pred HHHhHhhcCCCCCeec
Q 045180 218 LCCLYLSVFPVHFEIS 233 (243)
Q Consensus 218 ~~f~~ls~fp~~~~i~ 233 (243)
-.|.-++.|...|...
T Consensus 243 ~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 243 ALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHhcchhhhhhhhccc
Confidence 9999999998887655
No 20
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.74 E-value=2.5e-08 Score=81.32 Aligned_cols=92 Identities=10% Similarity=-0.064 Sum_probs=61.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHH-----HHHhCCCCCcccccChhhhh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL--YDADQILYDI-----IKFVMPSSRLSEIMEESSEM 96 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~~~ 96 (243)
....++|.|++|+|||||++.++++.... +|+..+|+.+... .+..+++..+ +..++.+... ...-.....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHHHH
Confidence 34678999999999999999999954433 8999999987666 6888999888 3333332110 000111222
Q ss_pred HHHHHHHH-hCCCeEEEEEeCCCC
Q 045180 97 KKIILHEY-LMTKRYLIVLDNVWR 119 (243)
Q Consensus 97 ~~~~l~~~-l~~~~~LlvlDdv~~ 119 (243)
...... -.+++.++++|++..
T Consensus 93 --~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 --EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred --HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 247899999999953
No 21
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.67 E-value=8.3e-07 Score=73.48 Aligned_cols=172 Identities=11% Similarity=0.039 Sum_probs=106.7
Q ss_pred hhHHHHHHHHhcC-CCCceEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHhCCC
Q 045180 9 NKMEELLDLLTEG-PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY----FDCHAWVEESLLYDADQILYDIIKFVMPS 83 (243)
Q Consensus 9 ~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 83 (243)
+.++.|.++|..+ ..+...+.|+|.+|.|||++++++.+..-.... --.++.+.....++...++..|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 3445566666655 346788999999999999999998863211110 11577788888899999999999999999
Q ss_pred CCcccccChhhhhHHHHHHHHhCC-CeEEEEEeCCCCc---------chhhHHHhhCCCCCCCcEEEEeeCccccc----
Q 045180 84 SRLSEIMEESSEMKKIILHEYLMT-KRYLIVLDNVWRI---------SVWDVIREILPDSQNGSRVLITLSRIEIV---- 149 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~---------~~~~~l~~~l~~~~~~~~iiiTtR~~~~~---- 149 (243)
.. ...+...+. ......++. +--+||+|++.+. +.++.+ ..+.+.-.-+-|.+-|++...+
T Consensus 124 ~~--~~~~~~~~~--~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 124 YR--PRDRVAKLE--QQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred cC--CCCCHHHHH--HHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccC
Confidence 86 444445555 555556644 3448899999653 122222 2333333344556666553222
Q ss_pred ----cccc-------------------ccC----CCCCChhhhhhhhHHHHhcCCchhHHHHH
Q 045180 150 ----ASFQ-------------------FEN----GENIGLDFLSTGGPLRVTYQGWPFHILYH 185 (243)
Q Consensus 150 ----~~~~-------------------f~~----~~~~~~~~~~~~~~i~~~c~glPlai~~~ 185 (243)
..+. |.. .....-...+.+..|...++|+.--+.-+
T Consensus 199 ~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 199 PQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 1111 222 11222234567889999999987766655
No 22
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=4.1e-07 Score=84.57 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=77.9
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCceEEEEEcCCCCcHHHHHHHHhcCccc---ccccc--eeEEEEeCCCCCHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG---PPQLSVVAILDSIGLDKTAFAVEAYSSNYV---KYYFD--CHAWVEESLLYDADQIL 73 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~---~~~F~--~~~wv~~~~~~~~~~~~ 73 (243)
+.+.||++++++|...|... .....++.|+|++|.|||++++.+.+...- ....+ .+++++...-.+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 46889999999999988753 223356789999999999999999873211 11122 35677777767888899
Q ss_pred HHHHHHhCCCCCcccccChhhhhHHHHHHHHhC---CCeEEEEEeCCCCc
Q 045180 74 YDIIKFVMPSSRLSEIMEESSEMKKIILHEYLM---TKRYLIVLDNVWRI 120 (243)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~ 120 (243)
..|+.++....+. ......+.. ..+...+. ....+||||+++..
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evL--erLF~~L~k~~r~v~IIILDEID~L 881 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKIL--DRLFNQNKKDNRNVSILIIDEIDYL 881 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHH--HHHHhhhhcccccceEEEeehHhhh
Confidence 9999998554332 222233344 55555442 22458999999643
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.60 E-value=3.4e-07 Score=78.16 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|++..++.|.+.+..+ ..+.+.++|++|+|||++|+.+++
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999988765 344688999999999999999887
No 24
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=4.2e-07 Score=79.92 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCcccchhhHHH---HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEE---LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++||++..+.. |.+.+... ....+.++|++|+||||+|+.+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 358999988766 77777665 456788999999999999999988
No 25
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.57 E-value=1e-06 Score=74.97 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=59.2
Q ss_pred HHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhh
Q 045180 15 LDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESS 94 (243)
Q Consensus 15 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 94 (243)
.+++..+ +.....+||++|+||||||+.+.. .....|. .++...+ ...+..+
T Consensus 40 rr~v~~~--~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~-------------------gvkdlr~ 91 (436)
T COG2256 40 RRAVEAG--HLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTS-------------------GVKDLRE 91 (436)
T ss_pred HHHHhcC--CCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----Eeccccc-------------------cHHHHHH
Confidence 3344444 567788999999999999999988 5555552 2222111 1112222
Q ss_pred hhHHHHH-HHHhCCCeEEEEEeCCCCcc--hhhHHHhhCCCCCCCcEEEEeeCccccc
Q 045180 95 EMKKIIL-HEYLMTKRYLIVLDNVWRIS--VWDVIREILPDSQNGSRVLITLSRIEIV 149 (243)
Q Consensus 95 ~~~~~~l-~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~iiiTtR~~~~~ 149 (243)
+. +.- +....+++.+|++|.|..-+ +-+.+ +|.-.+|.-|+|-+-.++..
T Consensus 92 i~--e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPs 144 (436)
T COG2256 92 II--EEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPS 144 (436)
T ss_pred HH--HHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCC
Confidence 22 333 33335899999999996442 33333 34445577777754444433
No 26
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.54 E-value=1e-07 Score=81.56 Aligned_cols=92 Identities=13% Similarity=-0.051 Sum_probs=59.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCccccc----ChhhhhH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY--DADQILYDIIKFVMPSSRLSEIM----EESSEMK 97 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~~ 97 (243)
..+..+|+|++|+||||||+.++++.... +|+.++|+.+.+.. .+.++...+...+-......... ......
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i- 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI- 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH-
Confidence 34668899999999999999999954333 89999999988876 66777777763222222110000 001112
Q ss_pred HHHHHHH-hCCCeEEEEEeCCC
Q 045180 98 KIILHEY-LMTKRYLIVLDNVW 118 (243)
Q Consensus 98 ~~~l~~~-l~~~~~LlvlDdv~ 118 (243)
+..... ..+++++|++|++.
T Consensus 246 -e~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 246 -EKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred -HHHHHHHHcCCCEEEEEEChH
Confidence 222222 36799999999995
No 27
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=8.4e-07 Score=81.70 Aligned_cols=134 Identities=10% Similarity=0.055 Sum_probs=73.2
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+.......++ ...+........|...-..
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREIDEGRFV 88 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHhcCCCc
Confidence 58999999999999988653 345678999999999999998877321111110 0111111112222111000
Q ss_pred CCCcc---cccChhhhhHHHHHHHH----hCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 83 SSRLS---EIMEESSEMKKIILHEY----LMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 83 ~~~~~---~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
...+. .....+++. +.+... ..++.-++|||+++.. +.++.|...+-....++++|++|.+.
T Consensus 89 DviEIDAas~rgVDdIR--eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 89 DYVEMDAASNRGVDEMA--ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred eEEEecccccccHHHHH--HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 00000 111122222 222211 1234458889999765 34677777665555577777777764
No 28
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2e-06 Score=78.25 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=37.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++||-+..++.|.+.+..+. -...+.++|..|+||||+|+.+.+
T Consensus 17 dVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAk 60 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAK 60 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999998763 345678999999999999998877
No 29
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=2.3e-06 Score=72.53 Aligned_cols=124 Identities=14% Similarity=0.164 Sum_probs=77.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCc----ccccccceeEEEEe-CCCCCHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSN----YVKYYFDCHAWVEE-SLLYDADQILYDI 76 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~----~~~~~F~~~~wv~~-~~~~~~~~~~~~i 76 (243)
.+++|-+...+.+.+.+..+. -.....++|+.|+|||++|..+++.. ....|+|...|... +......+ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 367899999999999987653 45677899999999999999887721 12234454444331 12222222 1222
Q ss_pred HHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCC--CcchhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 77 IKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVW--RISVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
...+.... ..+++-++|+|+++ +.+.++.+...+...+.++.+|++|.+..
T Consensus 82 ~~~~~~~p--------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 82 IEEVNKKP--------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred HHHHhcCc--------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 22221110 12344466667664 44678888888888788899998886653
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.5e-06 Score=73.74 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHH
Confidence 468999999999999887753 346678999999999999999887
No 31
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.47 E-value=1e-06 Score=74.43 Aligned_cols=114 Identities=15% Similarity=0.182 Sum_probs=82.5
Q ss_pred CCCcccchhhHHHHHHHHhcCCC-CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 1 NRDTVGLDNKMEELLDLLTEGPP-QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 1 ~~~~vGR~~~~~~l~~~L~~~~~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
++.+.+|+.++..+..++...+. -+..|.|+|-+|.|||.+.+++.+.... ..+|+++-..++...++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHH
Confidence 46789999999999999988754 4566799999999999999999984422 46899999999999999999999
Q ss_pred hCCCCCccc--c---cChhhhhHHHHHHHH--h--CCCeEEEEEeCCCCcc
Q 045180 80 VMPSSRLSE--I---MEESSEMKKIILHEY--L--MTKRYLIVLDNVWRIS 121 (243)
Q Consensus 80 l~~~~~~~~--~---~~~~~~~~~~~l~~~--l--~~~~~LlvlDdv~~~~ 121 (243)
.+....... . ....+.. ..+.++ . +++.++|||||++...
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i--~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFI--YLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHH--HHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 963222111 1 1112222 333331 1 2468999999996543
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.46 E-value=1.8e-06 Score=68.61 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=36.3
Q ss_pred CCcccchhhHHHHHHHHhc---CCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 2 RDTVGLDNKMEELLDLLTE---GPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~---~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
++|||.+..++.+.-.+.. ..+....+.+||++|+||||||.-+++ .....|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 5799999999887665543 233567889999999999999999999 555555
No 33
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.46 E-value=7.9e-07 Score=76.54 Aligned_cols=93 Identities=12% Similarity=-0.063 Sum_probs=61.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC--CCHHHHHHHHHHHhCCCCCcccccC----hhhhhH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL--YDADQILYDIIKFVMPSSRLSEIME----ESSEMK 97 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~ 97 (243)
..+.++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.+...+-.......... .+...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~- 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI- 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH-
Confidence 3467899999999999999999994322 36998899998865 6888898888544333322110100 01112
Q ss_pred HHHHHHH-hCCCeEEEEEeCCCC
Q 045180 98 KIILHEY-LMTKRYLIVLDNVWR 119 (243)
Q Consensus 98 ~~~l~~~-l~~~~~LlvlDdv~~ 119 (243)
+..... -.+++++|++|++..
T Consensus 245 -e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 -EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred -HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 257999999999953
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.1e-06 Score=78.16 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=73.6
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
++||.+.....|.+++..+. -...+.++|+.|+||||+|+.+++ .+.... +.. ..++......+.+...-..
T Consensus 16 dVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK--~LnC~~----~~~-~~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAK--CLNCET----GVT-STPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhCCCc----CCC-CCCCccCHHHHHHhcCCCC
Confidence 58999999999999998763 346789999999999999998877 332110 110 0111111111111111000
Q ss_pred CCCcc---cccChhhhhHHHHHHHH----hCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 83 SSRLS---EIMEESSEMKKIILHEY----LMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 83 ~~~~~---~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
..... .....+++. +.+... ..++.-++|+|+++.. ...+.+...+-....++++|++|.+.
T Consensus 88 DviEIDAAs~~~VddIR--eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 88 DLIEIDAASRTKVEDTR--ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred ceEEecccccCCHHHHH--HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 00000 011222222 111111 1345668999999755 45666776666555567777777653
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=98.42 E-value=2.2e-06 Score=72.85 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++.++.|.+.+..+ +...+.++|++|+||||+|..+++
T Consensus 14 ~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAH 56 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 5789888888888877655 344578999999999999999887
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.42 E-value=5.8e-07 Score=72.73 Aligned_cols=37 Identities=5% Similarity=-0.077 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
.+.+.++|++|+|||+|++.+++ ........+.+++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~ 75 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPL 75 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeH
Confidence 45789999999999999999998 44433445566655
No 37
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.5e-06 Score=79.95 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++||.+..+..|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk 60 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAK 60 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999887752 345568999999999999999987
No 38
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.42 E-value=2.3e-06 Score=72.54 Aligned_cols=115 Identities=16% Similarity=0.145 Sum_probs=68.9
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
+++|.++..+.+...+..+. .+..+.++|++|+|||++|+.+++ ..... ...++.+. .... ..+..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~--~~~~~---~~~i~~~~-~~~~-~i~~~l~---- 89 (316)
T PHA02544 22 ECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCN--EVGAE---VLFVNGSD-CRID-FVRNRLT---- 89 (316)
T ss_pred HhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCcc---ceEeccCc-ccHH-HHHHHHH----
Confidence 57899999999999887653 456777899999999999999987 33222 23333333 1111 1111111
Q ss_pred CCCcccccChhhhhHHHHHHHH--hCCCeEEEEEeCCCCc---chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 83 SSRLSEIMEESSEMKKIILHEY--LMTKRYLIVLDNVWRI---SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
.+... +.+.+-++|+|+++.. +..+.+...+.....++.+|+||...
T Consensus 90 -----------------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 90 -----------------RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred -----------------HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 11111 1134558899999654 22334444444445577888888653
No 39
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=2.4e-06 Score=76.67 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=39.2
Q ss_pred CcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 3 DTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++|.++.++.|.+++..- +...+.+.|+|++|+||||+|..++++
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998753 223678999999999999999999883
No 40
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.40 E-value=5.9e-06 Score=69.96 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|+++.++.+..++..+ ..+.+.++|++|+|||++|+.+++
T Consensus 18 ~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998765 344579999999999999999887
No 41
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.39 E-value=1e-06 Score=70.96 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 7 LDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 7 R~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
.+..++.+.+++... ....+.|+|++|+|||+||+.+++ .........+++++
T Consensus 22 ~~~~~~~l~~~~~~~--~~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 22 NAELLAALRQLAAGK--GDRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPL 74 (226)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeH
Confidence 344566666665433 467899999999999999999987 43333334455543
No 42
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=4.1e-06 Score=76.82 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=38.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..+..|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 dIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 58999999999999988763 346789999999999999998877
No 43
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.7e-06 Score=75.14 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..++.|...+..+. ....+.++|+.|+||||+|+.+++
T Consensus 17 diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999887653 345678999999999999999886
No 44
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.37 E-value=2.1e-06 Score=75.05 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=69.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
++++.++.++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.|+.+.+..+..+++..+ .+
T Consensus 176 d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~----rP 247 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY----RP 247 (459)
T ss_pred cccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc----CC
Confidence 4677888999999998865 468889999999999999998844334567788899999888766654322 11
Q ss_pred CCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc
Q 045180 83 SSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI 120 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~ 120 (243)
... .-.-..... ++.+..... ++++++|+|++...
T Consensus 248 ~~v--gy~~~~G~f-~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 248 NGV--GFRRKDGIF-YNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred CCC--CeEecCchH-HHHHHHHHhcccCCcEEEEehhhcc
Confidence 110 000001111 022222222 46899999999543
No 45
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.36 E-value=5.4e-07 Score=77.93 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=39.7
Q ss_pred CcccchhhHHHHHHHHhcC--C---------CCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 3 DTVGLDNKMEELLDLLTEG--P---------PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~--~---------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
++.|+++.+++|.+.+... . ..++-+.++|++|+|||++|+.+++ +....|
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~ 184 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF 184 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE
Confidence 4789999999998877432 0 2356799999999999999999998 454443
No 46
>PRK08116 hypothetical protein; Validated
Probab=98.34 E-value=4.1e-06 Score=69.35 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL 105 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 105 (243)
.-+.++|.+|+|||.||..+++ .+..+...+++++ ..+++..+......... .+ . ..+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~----~~----~--~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK----ED----E--NEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE------HHHHHHHHHHHHhcccc----cc----H--HHHHHHh
Confidence 4588999999999999999999 5544333456653 45566666655433211 11 1 3344444
Q ss_pred CCCeEEEEEeCCCC--cchh--hHHHhhCCC-CCCCcEEEEeeCc
Q 045180 106 MTKRYLIVLDNVWR--ISVW--DVIREILPD-SQNGSRVLITLSR 145 (243)
Q Consensus 106 ~~~~~LlvlDdv~~--~~~~--~~l~~~l~~-~~~~~~iiiTtR~ 145 (243)
.+-. ||||||+.. ...| +.+...+.. ..++..+|+||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4443 899999943 2333 223332221 1245668888864
No 47
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.4e-06 Score=73.38 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk 60 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAK 60 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999888753 345678999999999999999877
No 48
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.33 E-value=4.9e-06 Score=60.84 Aligned_cols=39 Identities=15% Similarity=0.017 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
...+.|+|++|+||||+++.++. ........++.+..+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR--ELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--ccCCCCCCEEEECCEE
Confidence 35789999999999999999988 4443333455554443
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=6.5e-06 Score=73.31 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++||.+.....|...+..+. -...+.++|++|+||||+|+.+++
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 358999888888888777653 345678999999999999999877
No 50
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.5e-06 Score=73.15 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++|.+...+.|.+.+..+. -...+.++|++|+||||+|+.+++.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899998888888887763 3456699999999999999998873
No 51
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1e-05 Score=72.55 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=37.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|-+..+..|...+..+. -...+.++|+.|+||||+|+.+++
T Consensus 22 dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 57899999998888777653 346788999999999999999987
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.9e-06 Score=74.08 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++||-+..+..|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368998888888888888763 346678999999999999998866
No 53
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1e-05 Score=72.77 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++||-+..+..|.+.+..+. -.....++|+.|+||||+|+.+++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk 60 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAK 60 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999997763 345678999999999999998877
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.1e-05 Score=71.91 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++||.+...+.|.+.+..+. -.+.+.++|+.|+||||+|+.+++
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 358999999988888887663 345789999999999999988876
No 55
>PRK10536 hypothetical protein; Provisional
Probab=98.29 E-value=6.2e-06 Score=67.09 Aligned_cols=135 Identities=10% Similarity=0.108 Sum_probs=73.3
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC----C-----CCCHHHH--
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEES----L-----LYDADQI-- 72 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~----~-----~~~~~~~-- 72 (243)
+.+|......+...|.+. ..|.+.|++|+|||+||..+..+.-....|+.++-..-. . +-+..+-
T Consensus 57 i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 57 ILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred ccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 467888888888888764 489999999999999998876632223345433332211 0 1122221
Q ss_pred --HHHHHHHhCCCCCcc--c-cc--ChhhhhHHHHHHHHhCCCe---EEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEe
Q 045180 73 --LYDIIKFVMPSSRLS--E-IM--EESSEMKKIILHEYLMTKR---YLIVLDNVWRISVWDVIREILPDSQNGSRVLIT 142 (243)
Q Consensus 73 --~~~i~~~l~~~~~~~--~-~~--~~~~~~~~~~l~~~l~~~~---~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiT 142 (243)
+.-+...+..-.... . .. ....+. -.-..+++++. -+||+|.+.+... .++...+...+.+|++|+|
T Consensus 133 p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Ie--i~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 133 PYFRPVYDVLVRRLGASFMQYCLRPEIGKVE--IAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccCcEE--EecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEe
Confidence 222222221100000 0 00 000011 11123455653 4999999977644 4555555556679999987
Q ss_pred eCc
Q 045180 143 LSR 145 (243)
Q Consensus 143 tR~ 145 (243)
--.
T Consensus 210 GD~ 212 (262)
T PRK10536 210 GDI 212 (262)
T ss_pred CCh
Confidence 544
No 56
>PRK08727 hypothetical protein; Validated
Probab=98.29 E-value=4e-06 Score=68.04 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
...+.|+|.+|+|||.|++.+++ ...++...+.+++.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~ 77 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPL 77 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeH
Confidence 35699999999999999999988 44444345566653
No 57
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.29 E-value=1.6e-05 Score=68.37 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..++.|.+.+..+. -...+.++|++|+|||++|..+++
T Consensus 15 ~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~ 58 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAK 58 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999887653 346788999999999999988876
No 58
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=3.6e-06 Score=78.42 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=36.9
Q ss_pred CcccchhhHH---HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 3 DTVGLDNKME---ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 3 ~~vGR~~~~~---~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
+|+|.+..+. .+.+.+..+ +...+.++|++|+||||+|+.+++ .....|
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 5889888875 455555544 455678999999999999999998 444444
No 59
>PRK08181 transposase; Validated
Probab=98.27 E-value=5.3e-06 Score=68.49 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL 105 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 105 (243)
.-+.++|++|+|||.||..+.+ ........+.+++ ..+++..+...... .+. ....+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~~-------~~~------~~~l~~l 165 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARRE-------LQL------ESAIAKL 165 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHhC-------CcH------HHHHHHH
Confidence 4589999999999999999987 4443333455553 45555555433211 111 2222223
Q ss_pred CCCeEEEEEeCCCCc--c--hhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 106 MTKRYLIVLDNVWRI--S--VWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 106 ~~~~~LlvlDdv~~~--~--~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
. +.-|||+||+... . ..+.+...+.....+..+||||...
T Consensus 166 ~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 D-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred h-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2 3349999999533 1 1123333333221124588888754
No 60
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.26 E-value=2.8e-06 Score=74.12 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|+++.++++.+.+... -..++-|.++|++|+|||++|+.+++
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 4679999999998876431 13466799999999999999999988
No 61
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.24 E-value=1.9e-06 Score=63.06 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|.|+|++|+|||++|+.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 57999999999999999999
No 62
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1e-05 Score=70.77 Aligned_cols=45 Identities=16% Similarity=0.021 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+...+.|.+.+..+. -...+.++|++|+||||+|..+++
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHH
Confidence 368899998898888887653 345688999999999999998877
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=3.1e-06 Score=68.74 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
+.+.+.|+|++|+|||+|++.+++ ........+.++++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEH
Confidence 345789999999999999999887 44333334556654
No 64
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=1.6e-05 Score=69.25 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhcCCC--------CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPP--------QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~--------~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|-+..++.|.+.+..+.. -...+.++|++|+|||++|..+++
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3688999999999999987521 356788999999999999998876
No 65
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.22 E-value=1.1e-05 Score=76.73 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=42.2
Q ss_pred CcccchhhHHHHHHHHhcC-CCCceEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 3 DTVGLDNKMEELLDLLTEG-PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
.++||+.+++.|...+.+- .....++.+.|.+|+|||++++++.. .+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK--PITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH--HHhcc
Confidence 4799999999999999874 33567999999999999999999987 55544
No 66
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=3.2e-05 Score=66.44 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=38.6
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|-++..+.+...+..+. ....+.++|+.|+||||+|..+++
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~ 67 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLAN 67 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHH
Confidence 357899999999999998763 456789999999999999998877
No 67
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=4.8e-05 Score=65.69 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++..+.|.+.+..+. -.....++|+.|+||+++|..+++
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999888863 345788999999999999988776
No 68
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=1.7e-05 Score=72.74 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++||.+..+..|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999888763 335578999999999999999887
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.1e-05 Score=69.55 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=37.5
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+++
T Consensus 19 dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999888763 234678999999999999999988
No 70
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.19 E-value=1.9e-05 Score=72.71 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSN 49 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~ 49 (243)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 35889999999988887654 45679999999999999999988743
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.17 E-value=6.7e-06 Score=77.36 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++||++++.++.+.|.... ..-+.++|++|+|||++|..+++
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998763 34567899999999999999887
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.9e-05 Score=66.45 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=38.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+...+.+.+.+..+. -.+.+.++|++|+|||++|..+.+
T Consensus 18 ~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998753 356888999999999999998877
No 73
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.16 E-value=1.7e-05 Score=63.95 Aligned_cols=119 Identities=13% Similarity=0.217 Sum_probs=70.6
Q ss_pred CcccchhhHHHHHHHHh---cCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 3 DTVGLDNKMEELLDLLT---EGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~---~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
+++|-+.+.+.|.+-.. .+. ...-+.+||..|+|||++++.+.+ +....- .--|.+...
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~--~y~~~G--LRlIev~k~------------- 89 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLN--EYADQG--LRLIEVSKE------------- 89 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHH--HHhhcC--ceEEEECHH-------------
Confidence 57888888888866432 232 456788899999999999999887 443322 222223221
Q ss_pred hCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCC---CcchhhHHHhhCCC----CCCCcEEEEeeCccccccc
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVW---RISVWDVIREILPD----SQNGSRVLITLSRIEIVAS 151 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~---~~~~~~~l~~~l~~----~~~~~~iiiTtR~~~~~~~ 151 (243)
...+...+. +.++. ...+++|.+||+. +...+..++..+-. .+.+..|..||-.+++...
T Consensus 90 --------~L~~l~~l~--~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 90 --------DLGDLPELL--DLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred --------HhccHHHHH--HHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 112222233 33331 3468999999985 22456666665543 2345566666665555443
No 74
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2.3e-05 Score=74.06 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=37.6
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999988763 345678999999999999999877
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4e-05 Score=69.85 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998763 345678999999999999999887
No 76
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.15 E-value=1.2e-05 Score=64.67 Aligned_cols=121 Identities=12% Similarity=0.190 Sum_probs=70.0
Q ss_pred cccc-hhhHHHHHHHHhcC-CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHHHHHH
Q 045180 4 TVGL-DNKMEELLDLLTEG-PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD--CHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 4 ~vGR-~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
++|- .+..-.....+... +.....+.|+|..|+|||.|.+.+++ +..+..+ .++++ +..++...+...
T Consensus 11 v~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~------~~~~f~~~~~~~ 82 (219)
T PF00308_consen 11 VVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYL------SAEEFIREFADA 82 (219)
T ss_dssp --TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEE------EHHHHHHHHHHH
T ss_pred CcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceee------cHHHHHHHHHHH
Confidence 3564 33334445555444 33345688999999999999999998 5544322 45565 456666666666
Q ss_pred hCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCcc---hh-hHHHhhCCC-CCCCcEEEEeeCcc
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRIS---VW-DVIREILPD-SQNGSRVLITLSRI 146 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~-~~l~~~l~~-~~~~~~iiiTtR~~ 146 (243)
+.... . ..+++.+.+- =+|++||++... .| +.+...+.. ...|.+||+|++..
T Consensus 83 ~~~~~-----------~--~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 83 LRDGE-----------I--EEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp HHTTS-----------H--HHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred HHccc-----------c--hhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 54422 2 5566666543 378899996432 22 222222221 12366899999664
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.5e-05 Score=70.93 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=38.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|++..++.|.+.+..+. ..+.+.++|+.|+||||+|..+++
T Consensus 17 dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999887653 346788999999999999999877
No 78
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3.2e-05 Score=70.73 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=38.6
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999988763 345788999999999999999987
No 79
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.12 E-value=6.3e-05 Score=58.87 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.+.+..+. -...+.++|+.|+|||++|..+.+
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455555442 346789999999999999988876
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.12 E-value=2.1e-05 Score=69.67 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccccc-c-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYF-D-CHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
..-+.|+|++|+|||+|++.+++ .+.... . .++|++ ..++...+...+.... . ..++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~~-----------~--~~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLVDSMKEGK-----------L--NEFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHhccc-----------H--HHHH
Confidence 44589999999999999999998 554433 2 455664 3456666666554221 1 3344
Q ss_pred HHhCCCeEEEEEeCCCCc---chh-hHHHhhCCC-CCCCcEEEEeeC
Q 045180 103 EYLMTKRYLIVLDNVWRI---SVW-DVIREILPD-SQNGSRVLITLS 144 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~---~~~-~~l~~~l~~-~~~~~~iiiTtR 144 (243)
+......-+|++||+... ... +.+...+.. ...+..||+||.
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 444344558999999643 111 223222211 122456888875
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=98.12 E-value=3.4e-05 Score=64.51 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=32.1
Q ss_pred CCcccchhhHHHHHHHHh---cC----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLT---EG----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~---~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|-++..++|.+... -. ......+.++|++|+|||++|+.+++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 357888777776654421 10 11234588999999999999999977
No 82
>PRK12377 putative replication protein; Provisional
Probab=98.11 E-value=1.4e-05 Score=65.29 Aligned_cols=74 Identities=14% Similarity=-0.006 Sum_probs=45.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
...+.++|.+|+|||+||..+++ .+......+.++++ .+++..+-....... .. ..+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~------~~l~~~l~~~~~~~~------~~------~~~l~~ 160 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV------PDVMSRLHESYDNGQ------SG------EKFLQE 160 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH------HHHHHHHHHHHhccc------hH------HHHHHH
Confidence 46789999999999999999998 55444445566643 345555544432111 11 222223
Q ss_pred hCCCeEEEEEeCCCC
Q 045180 105 LMTKRYLIVLDNVWR 119 (243)
Q Consensus 105 l~~~~~LlvlDdv~~ 119 (243)
+ .+--||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 3 3455999999943
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=98.11 E-value=1.2e-05 Score=65.28 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
...+.|+|.+|+|||.|++.+++ .....-..+++++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence 35788999999999999999887 43333335667654
No 84
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.11 E-value=1.2e-05 Score=76.78 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++||+.++.++.+.|.... ...+.++|++|+|||++|..+++
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHH
Confidence 458999999999999998873 44567899999999999999887
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.11 E-value=1.6e-05 Score=75.77 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++||++++.++.+.|.... ..-+.++|++|+|||++|..+++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHH
Confidence 358999999999999998763 34567999999999999999887
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.11 E-value=1.6e-05 Score=64.14 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=30.4
Q ss_pred Ccc-cchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTV-GLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~v-GR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+ |+++........+.......+.+.|+|.+|+|||+||..+++
T Consensus 19 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 19 NFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred ccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344 555444444444333222456789999999999999999888
No 87
>PRK09183 transposase/IS protein; Provisional
Probab=98.09 E-value=1e-05 Score=66.67 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+.|+|++|+|||+||..++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 35688999999999999999876
No 88
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.08 E-value=1.2e-05 Score=66.34 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=33.1
Q ss_pred CcccchhhHHHHHHHHhc---------C----CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTE---------G----PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~---------~----~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.++..++|.+.... . .+....+.++|++|+|||++|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478888888777543211 1 22456788999999999999999876
No 89
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=3.3e-05 Score=67.11 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=80.0
Q ss_pred CCcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
+..+||+.++..+.+++... .+..+.+-|.|-+|.|||.+...++.+..-...-..+++++...-.....++..|...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 56899999999999998875 3467788899999999999999888843222221245777776656677788888877
Q ss_pred hCCCCCcccccChhhhhHHHHHHHHhCCC--eEEEEEeCCCC
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEYLMTK--RYLIVLDNVWR 119 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~ 119 (243)
+..... ......+.. ..+..+..+. .+|+|+|..+.
T Consensus 230 ~~q~~~--s~~~~~~~~--~~~~~h~~q~k~~~llVlDEmD~ 267 (529)
T KOG2227|consen 230 LLQDLV--SPGTGMQHL--EKFEKHTKQSKFMLLLVLDEMDH 267 (529)
T ss_pred HHHHhc--CCchhHHHH--HHHHHHHhcccceEEEEechhhH
Confidence 732222 122224556 7777777654 58889998853
No 90
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=6.4e-05 Score=69.00 Aligned_cols=134 Identities=11% Similarity=0.108 Sum_probs=74.0
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
++++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+++ .+...... ....+++.....+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~--~l~c~~~~----~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAK--AVNCTTND----PKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHH--HhcCCCCC----CCCCCCccCHHHHHHhcCCC
Confidence 368999999999988887653 345678999999999999999887 33211100 00112222333344433222
Q ss_pred CCCCcc---cccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCc
Q 045180 82 PSSRLS---EIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSR 145 (243)
Q Consensus 82 ~~~~~~---~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~ 145 (243)
...... .....+++. .+.+.+ .+++-++|+|+++.. +..+.|...+-.....+.+|+++.+
T Consensus 89 ~d~~~i~~~~~~~vd~ir---~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR---EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred CeEEEEeccccCCHHHHH---HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111000 111222222 122222 245668999999654 4566676666555556666666543
No 91
>PRK06526 transposase; Provisional
Probab=98.06 E-value=7.7e-06 Score=67.10 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
..-+.++|++|+|||+||..+.. .....-..+.++ +..+++..+...... .... ..+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~--~a~~~g~~v~f~------t~~~l~~~l~~~~~~----------~~~~--~~l~~- 156 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGI--RACQAGHRVLFA------TAAQWVARLAAAHHA----------GRLQ--AELVK- 156 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHH--HHHHCCCchhhh------hHHHHHHHHHHHHhc----------CcHH--HHHHH-
Confidence 45689999999999999999877 332222223332 344455554432211 1112 23322
Q ss_pred hCCCeEEEEEeCCCCc---ch-hhHHHhhCCC-CCCCcEEEEeeCcc
Q 045180 105 LMTKRYLIVLDNVWRI---SV-WDVIREILPD-SQNGSRVLITLSRI 146 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~---~~-~~~l~~~l~~-~~~~~~iiiTtR~~ 146 (243)
+ .+.-|||+||+... .. .+.+...+.. ..++ .+|+||...
T Consensus 157 l-~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 157 L-GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred h-ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 2 23458999999643 11 1223333321 1223 488888754
No 92
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.06 E-value=6.5e-05 Score=63.68 Aligned_cols=121 Identities=12% Similarity=0.119 Sum_probs=74.3
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc---------------------cceeEEE
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY---------------------FDCHAWV 61 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~---------------------F~~~~wv 61 (243)
.++|-+....++..+..........+.++|++|+||||+|..+++ .+... .+.+..+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAK--ELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHH--HHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 567888889999998886544455699999999999999998887 33211 1233333
Q ss_pred EeCCCCC---HHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCC
Q 045180 62 EESLLYD---ADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI--SVWDVIREILPDSQNG 136 (243)
Q Consensus 62 ~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~ 136 (243)
+.+.... ..+..+++.+....... .+..-++++|+++.. +..+.+...+-.....
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~~--------------------~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESPL--------------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCCC--------------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 3333222 12222222222211110 145668899999755 4456666666666667
Q ss_pred cEEEEeeCc
Q 045180 137 SRVLITLSR 145 (243)
Q Consensus 137 ~~iiiTtR~ 145 (243)
+.+|++|.+
T Consensus 140 ~~~il~~n~ 148 (325)
T COG0470 140 TRFILITND 148 (325)
T ss_pred eEEEEEcCC
Confidence 888888774
No 93
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4.2e-05 Score=70.21 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.+..+..|.+.+..+. -.....++|+.|+||||+|..+++
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 358999999999988887652 345688999999999999988877
No 94
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.06 E-value=4.9e-06 Score=64.65 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=42.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
...-+.++|.+|+|||.||..+.+ +...+-..+.+++ ..+++..+-..- .....+ +.+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~-----~~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT------ASDLLDELKQSR-------SDGSYE-----ELLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE------HHHHHHHHHCCH-------CCTTHC-----HHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee------cCceeccccccc-------cccchh-----hhcCc
Confidence 346799999999999999999987 4443333566664 445555553221 111112 22222
Q ss_pred HhCCCeEEEEEeCCCCc
Q 045180 104 YLMTKRYLIVLDNVWRI 120 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~ 120 (243)
+. +-=||||||+-..
T Consensus 106 -l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 -LK-RVDLLILDDLGYE 120 (178)
T ss_dssp -HH-TSSCEEEETCTSS
T ss_pred -cc-cccEeccccccee
Confidence 22 2348889999644
No 95
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.05 E-value=1.5e-05 Score=75.05 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.++.++.+.+.+... .....++.++|++|+|||+||+.+++
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence 46789999999998888742 11234688999999999999999988
No 96
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.05 E-value=2.9e-05 Score=64.91 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=30.9
Q ss_pred CcccchhhHHHHHHHHhc---C----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTE---G----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~---~----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|-++..++|.+...- . .....-+.++|++|+|||++|+.+++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 578887777776553221 0 11233688999999999999977665
No 97
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.04 E-value=2.4e-05 Score=69.66 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD--CHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIIL 101 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 101 (243)
....+.|+|++|+|||+|++.+++ .+...++ .+++++ ..++...+...+.... . ..+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~------~~~~~~~~~~~~~~~~-----------~--~~~ 205 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVT------SEKFTNDFVNALRNNT-----------M--EEF 205 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHcCc-----------H--HHH
Confidence 345689999999999999999998 5555442 345553 3444555555543211 1 334
Q ss_pred HHHhCCCeEEEEEeCCCCcc----hhhHHHhhCCC-CCCCcEEEEeeCcc
Q 045180 102 HEYLMTKRYLIVLDNVWRIS----VWDVIREILPD-SQNGSRVLITLSRI 146 (243)
Q Consensus 102 ~~~l~~~~~LlvlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~ 146 (243)
.+.++. .-+|++||+.... ..+.+...+.. ...+..||+||...
T Consensus 206 ~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 206 KEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred HHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 444442 3488999996431 12233332211 11244578877653
No 98
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.04 E-value=2.4e-05 Score=68.74 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYF--DCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
...+.|+|++|+|||+|++.+++ .+.... ..+++++ ..++...+...+.... . ..+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~--~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~~-----------~--~~~~ 194 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGN--EILENNPNAKVVYVS------SEKFTNDFVNALRNNK-----------M--EEFK 194 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHHHhCCCCcEEEEE------HHHHHHHHHHHHHcCC-----------H--HHHH
Confidence 45688999999999999999998 554433 2355553 3445555555553221 1 3344
Q ss_pred HHhCCCeEEEEEeCCCCcc---h-hhHHHhhCCCC-CCCcEEEEeeCc
Q 045180 103 EYLMTKRYLIVLDNVWRIS---V-WDVIREILPDS-QNGSRVLITLSR 145 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~~---~-~~~l~~~l~~~-~~~~~iiiTtR~ 145 (243)
+.+.+ .-+|++||+.... . .+.+...+... ..+..+|+||..
T Consensus 195 ~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 195 EKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred HHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 44433 2388899996431 1 12233222211 234567887764
No 99
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.03 E-value=2.4e-05 Score=63.27 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=29.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
-.++|.|.+|+|||+|...+.. .....|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3577899999999999999888 67778877776644
No 100
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.00 E-value=2.5e-05 Score=74.43 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++||+.++.++.+.|.... ..-+.++|++|+|||++|..+++
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHH
Confidence 468999999999999998873 34567999999999999999887
No 101
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.99 E-value=2.2e-05 Score=75.04 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++||+.++.++...|.... ...+.++|++|+|||++|..+++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHH
Confidence 358999999999999998863 44566899999999999998887
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00011 Score=67.38 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+.....|.+.+..+. -...+.++|+.|+||||+|+.+++
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999887763 345678999999999999998877
No 103
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.97 E-value=5.7e-05 Score=61.54 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
...+.++|.+|+|||+||..+++ .....-..++++ +..+++..+-..... ...+. ..+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~i------t~~~l~~~l~~~~~~-----~~~~~------~~~l~~ 159 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLII------TVADIMSAMKDTFSN-----SETSE------EQLLND 159 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEE------EHHHHHHHHHHHHhh-----ccccH------HHHHHH
Confidence 45788999999999999999998 444333455555 345555555444321 11111 233334
Q ss_pred hCCCeEEEEEeCCCCc--chhhH--HHhhCCC-CCCCcEEEEeeCc
Q 045180 105 LMTKRYLIVLDNVWRI--SVWDV--IREILPD-SQNGSRVLITLSR 145 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~--~~~~~--l~~~l~~-~~~~~~iiiTtR~ 145 (243)
+. +.=+||+||+... ..|+. +...+.. ......+||||-.
T Consensus 160 l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 160 LS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred hc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 44 3448888999644 33432 2222221 1223457777753
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.97 E-value=3.1e-05 Score=63.89 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=75.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeE-EEEeCCCCCHHHHHHHHHHHhC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHA-WVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
+++|-+..++-|.+.+... .......+|++|.|||+.|..+++..--.+.|++.+ -.+++......-+-.
T Consensus 37 e~~gQe~vV~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~------- 107 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVRE------- 107 (346)
T ss_pred hhcchHHHHHHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhh-------
Confidence 5788899999999999884 467888999999999999988877322234565433 334443322210000
Q ss_pred CCCCcccccChhhhhHHHHHHHHhC--CCe-EEEEEeCCCCc--chhhHHHhhCCCCCCCcE-EEEeeCccccccc
Q 045180 82 PSSRLSEIMEESSEMKKIILHEYLM--TKR-YLIVLDNVWRI--SVWDVIREILPDSQNGSR-VLITLSRIEIVAS 151 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~--~~~-~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~-iiiTtR~~~~~~~ 151 (243)
...+.+.+. ........ -.+ -.+|||+++.. +.|..++..+-+....++ |+||+--..+...
T Consensus 108 ------Kik~fakl~--~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 108 ------KIKNFAKLT--VLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred ------hhcCHHHHh--hccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 011111111 11100000 112 37789999765 678888888766554554 4555544444333
No 105
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00015 Score=65.40 Aligned_cols=44 Identities=16% Similarity=0.026 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|-+...+.|...+..+. -.....++|+.|+||||+|+.+++
T Consensus 15 eiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk 58 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFAR 58 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHH
Confidence 57899999999999887663 445678999999999999998776
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.97 E-value=5.3e-05 Score=67.14 Aligned_cols=99 Identities=9% Similarity=0.123 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
..-+.|+|++|+|||+|++.+++ .+......+++++ ...+...+...+.... . +.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~------~~~f~~~~~~~l~~~~-----------~--~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR------SELFTEHLVSAIRSGE-----------M--QRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee------HHHHHHHHHHHHhcch-----------H--HHHHHH
Confidence 35688999999999999999998 4443333445553 3445555555543211 1 344444
Q ss_pred hCCCeEEEEEeCCCCcc----hhhHHHhhCCCC-CCCcEEEEeeCc
Q 045180 105 LMTKRYLIVLDNVWRIS----VWDVIREILPDS-QNGSRVLITLSR 145 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~~----~~~~l~~~l~~~-~~~~~iiiTtR~ 145 (243)
.+. .-+|++||+.... ..+++...+... ..+..||+||..
T Consensus 200 ~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 200 YRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred ccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 433 3488889985431 122333322211 125578888854
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=3.7e-05 Score=68.26 Aligned_cols=102 Identities=14% Similarity=0.262 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYF--DCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
..-+.|+|..|+|||+|++.+++ .+.... ..++++ +..++...+...+.... ... +.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~---------~~~--~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYM------SGDEFARKAVDILQKTH---------KEI--EQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh---------hHH--HHHH
Confidence 45688999999999999999988 443222 234444 44567777776664311 112 4444
Q ss_pred HHhCCCeEEEEEeCCCCcc----hhhHHHhhCCCC-CCCcEEEEeeCcc
Q 045180 103 EYLMTKRYLIVLDNVWRIS----VWDVIREILPDS-QNGSRVLITLSRI 146 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~~----~~~~l~~~l~~~-~~~~~iiiTtR~~ 146 (243)
+.++. .-+|++||+.... ..+.+...+... ..+..||+||...
T Consensus 202 ~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 202 NEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred HHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 44443 3478899996432 223343333221 2345688887653
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.0001 Score=67.31 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=36.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++|-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 57898888888888887652 2467889999999999999998873
No 109
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.95 E-value=0.0002 Score=54.74 Aligned_cols=118 Identities=12% Similarity=0.134 Sum_probs=67.3
Q ss_pred cchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccc------------------cccceeEEEEeCCCC
Q 045180 6 GLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVK------------------YYFDCHAWVEESLLY 67 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~------------------~~F~~~~wv~~~~~~ 67 (243)
|-++..+.|.+.+..+. -+..+.++|+.|+||+++|..+++..--. ...+...|+.-....
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 55667777777776653 45678999999999999998876521001 112223333222210
Q ss_pred CHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEE
Q 045180 68 DADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVL 140 (243)
Q Consensus 68 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ii 140 (243)
.....+++ ..+.+.+ .+..=++|+|+++.. +..+.|...+-..+.++.+|
T Consensus 80 --------------------~~i~i~~i---r~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 80 --------------------KSIKIDQI---REIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp --------------------SSBSHHHH---HHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred --------------------chhhHHHH---HHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 01122222 2222222 134558899999754 56677777776666788999
Q ss_pred EeeCccc
Q 045180 141 ITLSRIE 147 (243)
Q Consensus 141 iTtR~~~ 147 (243)
++|.+..
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 9988754
No 110
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=0.00019 Score=64.33 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+.....|.+.+..+. -.....++|+.|+||||+|+.++.
T Consensus 17 diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999997753 345677899999999999998876
No 111
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.94 E-value=2.4e-05 Score=68.24 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=35.6
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|.+..+++|.+.+... -..++-+.++|++|+|||++|+.+++
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4678888888887766421 12467899999999999999999998
No 112
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00024 Score=64.80 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+.....|.+.+..+. -.+...++|+.|+|||++|+.+++
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAk 60 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAK 60 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999998763 356678899999999999998876
No 113
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.93 E-value=1.1e-05 Score=63.71 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=62.0
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC--C-------CHHH---
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL--Y-------DADQ--- 71 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~--~-------~~~~--- 71 (243)
+.++..+.....+.|... .++.+.|++|+|||.||...+-+.-....|+.++++.-.-+ . +..+
T Consensus 2 I~p~~~~Q~~~~~al~~~----~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNN----DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp ----SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------
T ss_pred ccCCCHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 345677788888888843 58999999999999999877654333467777766642111 0 1111
Q ss_pred -HHHHHHHHhCCCCCcccccChhhhhHHHHHH---------HHhCCC---eEEEEEeCCCCcchhhHHHhhCCCCCCCcE
Q 045180 72 -ILYDIIKFVMPSSRLSEIMEESSEMKKIILH---------EYLMTK---RYLIVLDNVWRISVWDVIREILPDSQNGSR 138 (243)
Q Consensus 72 -~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~---------~~l~~~---~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ 138 (243)
.+..+...+..-.. .+... ..+. ..++|+ +.++|+|++.+.. -+++...+.+.+.+||
T Consensus 78 p~~~p~~d~l~~~~~------~~~~~--~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t-~~~~k~ilTR~g~~sk 148 (205)
T PF02562_consen 78 PYLRPIYDALEELFG------KEKLE--ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT-PEELKMILTRIGEGSK 148 (205)
T ss_dssp TTTHHHHHHHTTTS-------TTCHH--HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG---HHHHHHHHTTB-TT-E
T ss_pred HHHHHHHHHHHHHhC------hHhHH--HHhhcCeEEEEehhhhcCccccceEEEEecccCCC-HHHHHHHHcccCCCcE
Confidence 12222222221110 01111 1111 123453 5799999996542 2344455556677999
Q ss_pred EEEeeCc
Q 045180 139 VLITLSR 145 (243)
Q Consensus 139 iiiTtR~ 145 (243)
+|++=-.
T Consensus 149 ii~~GD~ 155 (205)
T PF02562_consen 149 IIITGDP 155 (205)
T ss_dssp EEEEE--
T ss_pred EEEecCc
Confidence 9997543
No 114
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.92 E-value=4.2e-05 Score=72.91 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=37.0
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.+..++.+.+.+... .....++.++|++|+|||.+|+.++.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999998888532 22345789999999999999998876
No 115
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.92 E-value=7.8e-05 Score=62.86 Aligned_cols=100 Identities=9% Similarity=0.072 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
..+-+.++|..|+|||.||..+++ .....-..+.++++ .+++..+........ . ....+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~------~~l~~~lk~~~~~~~-------~------~~~l~ 213 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF------PEFIRELKNSISDGS-------V------KEKID 213 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH------HHHHHHHHHHHhcCc-------H------HHHHH
Confidence 346788999999999999999998 44333334555543 456666655543211 1 22222
Q ss_pred HhCCCeEEEEEeCCCCc--chhh--HHHhhC-CCC-CCCcEEEEeeCc
Q 045180 104 YLMTKRYLIVLDNVWRI--SVWD--VIREIL-PDS-QNGSRVLITLSR 145 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~--~~~~--~l~~~l-~~~-~~~~~iiiTtR~ 145 (243)
.+. +--||||||+... ..|. ++...+ ... ..+..+|+||--
T Consensus 214 ~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 214 AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 232 4458999999543 3453 343332 211 234567888764
No 116
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.91 E-value=5.5e-05 Score=60.91 Aligned_cols=99 Identities=16% Similarity=0.086 Sum_probs=55.8
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH----hCCCCCcccc
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF----VMPSSRLSEI 89 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~ 89 (243)
|-+.|..+-....++.|+|.+|+|||++|.+++. ........++|++.. ..+...+ .++... +.........
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~ 87 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEP 87 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeC
Confidence 3344444434568999999999999999998887 333344578899887 4444333 223322 1000000011
Q ss_pred cCh---hhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 90 MEE---SSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 90 ~~~---~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
.+. .+.. +.+...+..+.-++|+|.+.
T Consensus 88 ~~~~~~~~~i--~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 88 SSFEEQSEAI--RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred CCHHHHHHHH--HHHHHHHHhcccEEEEeCcH
Confidence 122 2223 34444444566799999983
No 117
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.91 E-value=6.1e-05 Score=61.84 Aligned_cols=76 Identities=14% Similarity=0.054 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
+..-+.++|.+|+|||.||..+.+ ++...--.+.++ +..+++.++......... . .++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~------~~~el~~~Lk~~~~~~~~----------~--~~l~~ 163 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFI------TAPDLLSKLKAAFDEGRL----------E--EKLLR 163 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEE------EHHHHHHHHHHHHhcCch----------H--HHHHH
Confidence 456788999999999999999999 555333355555 456677777766654211 1 33444
Q ss_pred HhCCCeEEEEEeCCCCc
Q 045180 104 YLMTKRYLIVLDNVWRI 120 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~ 120 (243)
.+.. -=||||||+...
T Consensus 164 ~l~~-~dlLIiDDlG~~ 179 (254)
T COG1484 164 ELKK-VDLLIIDDIGYE 179 (254)
T ss_pred Hhhc-CCEEEEecccCc
Confidence 3322 238999999653
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00016 Score=64.33 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.+..++.|.+.+..+. -...+.++|+.|+|||++|..+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHH
Confidence 358999999999999987653 346688999999999999988876
No 119
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.91 E-value=0.00017 Score=69.09 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.+..++.+.+.+... ......+.+.|++|+|||++|+.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~ 617 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAE 617 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999988752 11245788999999999999999887
No 120
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00019 Score=66.06 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=37.2
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+...+.|.+.+..+. -...+.++|+.|+||||+|..+++
T Consensus 18 ~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk 61 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAK 61 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999988763 346688999999999999988766
No 121
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.89 E-value=0.00017 Score=58.06 Aligned_cols=99 Identities=14% Similarity=0.159 Sum_probs=58.8
Q ss_pred HHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc------ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc--
Q 045180 15 LDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF------DCHAWVEESLLYDADQILYDIIKFVMPSSRL-- 86 (243)
Q Consensus 15 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-- 86 (243)
-+.|..+-....++.|.|.+|+|||+||.+++. ...... ..++|++....++...+ .++....+.....
T Consensus 9 D~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~--~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~ 85 (226)
T cd01393 9 DELLGGGIPTGRITEIFGEFGSGKTQLCLQLAV--EAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVL 85 (226)
T ss_pred HHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHH--HhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhh
Confidence 334444434568999999999999999988876 222222 46789988776665443 3444443322110
Q ss_pred -c----cccChhhhhHHHHHHHHhC----CCeEEEEEeCCC
Q 045180 87 -S----EIMEESSEMKKIILHEYLM----TKRYLIVLDNVW 118 (243)
Q Consensus 87 -~----~~~~~~~~~~~~~l~~~l~----~~~~LlvlDdv~ 118 (243)
. ...+.+++. ..+..... .+.-|+|+|.+.
T Consensus 86 ~~i~~~~~~~~~~~~--~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 86 DNIYVARPYNGEQQL--EIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred ccEEEEeCCCHHHHH--HHHHHHHHHhhcCCeeEEEEcCcc
Confidence 0 123445555 55555442 345599999984
No 122
>PF14516 AAA_35: AAA-like domain
Probab=97.88 E-value=0.0028 Score=54.23 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=68.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-----CCHHHHHHHHH
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL-----YDADQILYDII 77 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~ 77 (243)
..|+|...-+++.+.|..+ ...+.|.|+-.+|||+|..++.+ ..+..--.++++++..- .+...+++.++
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~--~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred cccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHH--HHHHCCCEEEEEEeecCCCcccCCHHHHHHHHH
Confidence 4678987788888888774 26899999999999999999887 44332224556765542 24555555554
Q ss_pred H----HhCCCCCcc-----cccChhhhhHHHHHHHHh---CCCeEEEEEeCCCC
Q 045180 78 K----FVMPSSRLS-----EIMEESSEMKKIILHEYL---MTKRYLIVLDNVWR 119 (243)
Q Consensus 78 ~----~l~~~~~~~-----~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~ 119 (243)
. +++.+..-. ...+..... ..+.+.+ .+++.+|++|+++.
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~--~~~~~~ll~~~~~~lVL~iDEiD~ 138 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCT--EYFEEYLLKQIDKPLVLFIDEIDR 138 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHH--HHHHHHHHhcCCCCEEEEEechhh
Confidence 4 444332110 111222333 4455443 25799999999964
No 123
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=5.5e-05 Score=68.82 Aligned_cols=99 Identities=10% Similarity=0.156 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYF--DCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
..+.|+|..|+|||.|++.+++ .....+ -.++++ +..++...+...+.... . ..+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yi------taeef~~el~~al~~~~-----------~--~~f~~ 373 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYV------SSEEFTNEFINSIRDGK-----------G--DSFRR 373 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEe------eHHHHHHHHHHHHHhcc-----------H--HHHHH
Confidence 4589999999999999999998 444332 244565 34455555554443211 1 33444
Q ss_pred HhCCCeEEEEEeCCCCc---chh-hHHHhhCCCC-CCCcEEEEeeCcc
Q 045180 104 YLMTKRYLIVLDNVWRI---SVW-DVIREILPDS-QNGSRVLITLSRI 146 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~---~~~-~~l~~~l~~~-~~~~~iiiTtR~~ 146 (243)
.+.+- =+|+|||+... +.+ +.+...+... ..+..||+||...
T Consensus 374 ~y~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 374 RYREM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred HhhcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 44432 47888999643 222 2333333211 2355688888763
No 124
>PRK08118 topology modulation protein; Reviewed
Probab=97.88 E-value=6.3e-06 Score=63.38 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEE
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVK-YYFDCHAW 60 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~F~~~~w 60 (243)
+.|.|.|++|+||||||+.+++...+. -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358899999999999999999844333 35676776
No 125
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.88 E-value=0.0001 Score=59.69 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-----
Q 045180 17 LLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY----FDCHAWVEESLLYDADQILYDIIKFVMPSSRLS----- 87 (243)
Q Consensus 17 ~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----- 87 (243)
.|..+-....++.|.|.+|+|||+|+.+++........ ...++|++....++...+ .++++..+......
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~ 89 (235)
T cd01123 11 LLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIY 89 (235)
T ss_pred hccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEE
Confidence 34333345689999999999999999988753222221 257899998776665433 33444433321110
Q ss_pred --cccCh---hhhhHHHHHHHHhC-C-CeEEEEEeCCC
Q 045180 88 --EIMEE---SSEMKKIILHEYLM-T-KRYLIVLDNVW 118 (243)
Q Consensus 88 --~~~~~---~~~~~~~~l~~~l~-~-~~~LlvlDdv~ 118 (243)
...+. .... ..+.+.+. . +.-|+|+|.+.
T Consensus 90 ~~~~~~~~~l~~~l--~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 90 VARAYNSDHQLQLL--EELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred EEecCCHHHHHHHH--HHHHHHHhhcCCeeEEEEeCcH
Confidence 11112 2233 44444553 3 56799999984
No 126
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.87 E-value=5.2e-05 Score=64.47 Aligned_cols=100 Identities=9% Similarity=0.119 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL 105 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 105 (243)
..+.++|.+|+|||.||..+++ .+...-..++++++ .+++..+...-..... +.. .. .+.+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t~------~~l~~~l~~~~~~~~~-----~~~-----~~-~~~l 244 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRTA------DELIEILREIRFNNDK-----ELE-----EV-YDLL 244 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEEH------HHHHHHHHHHHhccch-----hHH-----HH-HHHh
Confidence 6799999999999999999988 44433335666643 4444444332111110 001 11 1222
Q ss_pred CCCeEEEEEeCCCCc--chh--hHHHhhCCCC-CCCcEEEEeeCc
Q 045180 106 MTKRYLIVLDNVWRI--SVW--DVIREILPDS-QNGSRVLITLSR 145 (243)
Q Consensus 106 ~~~~~LlvlDdv~~~--~~~--~~l~~~l~~~-~~~~~iiiTtR~ 145 (243)
.+ -=|||+||+... ..| +.+...+... ..+..+||||-.
T Consensus 245 ~~-~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 245 IN-CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cc-CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22 238999999543 222 3333333321 224568888864
No 127
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00028 Score=64.29 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++
T Consensus 17 diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999998763 456788999999999999999887
No 128
>PRK06696 uridine kinase; Validated
Probab=97.85 E-value=3.3e-05 Score=62.21 Aligned_cols=42 Identities=24% Similarity=0.108 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHhcC-CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 6 GLDNKMEELLDLLTEG-PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
-|.+.+++|.+.+... ..++.+|+|.|.+|+||||||+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4777888888888753 34688999999999999999999987
No 129
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.85 E-value=0.00017 Score=61.18 Aligned_cols=97 Identities=24% Similarity=0.274 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
+...+.+||++|+||||||+.+.... +.+ ...+|..+-...-..-.+.|+++ .+-..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~ts--k~~--SyrfvelSAt~a~t~dvR~ife~-------------------aq~~~ 217 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTS--KKH--SYRFVELSATNAKTNDVRDIFEQ-------------------AQNEK 217 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhc--CCC--ceEEEEEeccccchHHHHHHHHH-------------------HHHHH
Confidence 67778899999999999999998833 322 24566665543322333333321 11122
Q ss_pred HhCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEE--eeCcc
Q 045180 104 YLMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLI--TLSRI 146 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iii--TtR~~ 146 (243)
.+.++|.+|.+|.+..- .+-+ .++|.-.+|+-++| ||.++
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCC
Confidence 34578999999999533 2222 24454455665555 44443
No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.85 E-value=0.00016 Score=69.17 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.+..++.+...+... +.....+.++|++|+|||++|+.+++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999998888642 11235788999999999999999886
No 131
>PRK06921 hypothetical protein; Provisional
Probab=97.85 E-value=5.6e-05 Score=62.50 Aligned_cols=37 Identities=16% Similarity=-0.012 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccc-cceeEEEEe
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FDCHAWVEE 63 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~~~~wv~~ 63 (243)
...+.++|.+|+|||.||..+++ .+... ...+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 46789999999999999999998 55443 345666653
No 132
>PRK04296 thymidine kinase; Provisional
Probab=97.84 E-value=2.2e-05 Score=61.62 Aligned_cols=114 Identities=10% Similarity=-0.034 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL 105 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 105 (243)
.++.|+|+.|+||||++..++. +...+...++.+. +..+.......++.+++.+..........++. ..+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~--~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIF--ELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHH--HHHHh-h
Confidence 4788999999999999988877 4443333344342 11122222344556665432210122334444 55554 3
Q ss_pred CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcccc
Q 045180 106 MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRIEI 148 (243)
Q Consensus 106 ~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 148 (243)
.++.-+||+|.+.-. ++..++...+ ...|..||+|.++...
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 334458999999543 2233333332 2347889999998654
No 133
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.84 E-value=8.6e-05 Score=59.04 Aligned_cols=90 Identities=10% Similarity=0.074 Sum_probs=53.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh----CCCCCcccccCh---hhh
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFV----MPSSRLSEIMEE---SSE 95 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~~~~~---~~~ 95 (243)
+...++.|+|++|+|||+++.+++. ........++|++... ++...+.+ ++... ..........+. ...
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 4578999999999999999988876 3333456789998875 55444433 22221 000000011121 223
Q ss_pred hHHHHHHHHhCC-CeEEEEEeCCC
Q 045180 96 MKKIILHEYLMT-KRYLIVLDNVW 118 (243)
Q Consensus 96 ~~~~~l~~~l~~-~~~LlvlDdv~ 118 (243)
. ..+.+.+.. +.-++|+|.+.
T Consensus 86 ~--~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 I--QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred H--HHHHHHHhhcCccEEEEeCcH
Confidence 4 555555544 45689999984
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00029 Score=64.93 Aligned_cols=134 Identities=10% Similarity=0.033 Sum_probs=73.2
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc-cceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
+++|.+...+.|...+..+. -...+.++|+.|+||||+|+.+++. +... .+.. ...++......+.+.....
T Consensus 17 ~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~~----~~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDKP----TPEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHH--hcCCCcCCC----CCCCCcccHHHHHHhcCCC
Confidence 57899999999999888763 2356789999999999999998873 3211 1000 0012222233333333222
Q ss_pred CCCCcc---cccChhhhhHHHHHHHH----hCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCc
Q 045180 82 PSSRLS---EIMEESSEMKKIILHEY----LMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSR 145 (243)
Q Consensus 82 ~~~~~~---~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~ 145 (243)
...... .....+++. +.+... ..+++-++|+|+++.. +..+.|...+-.....+.+|++|.+
T Consensus 90 ~D~~ei~~~~~~~vd~IR--eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIR--ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred ccEEEEeccccCCHHHHH--HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 211000 111222222 222111 1244568899999755 4566677776655545555555543
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.84 E-value=8.4e-05 Score=69.81 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++||++++.++.+.|.... ..-+.++|++|+|||++|+.+++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998863 34557899999999999999887
No 136
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.83 E-value=0.00011 Score=63.15 Aligned_cols=102 Identities=13% Similarity=0.000 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc-ce-eEEEEeCCC-CCHHHHHHHHHHHhCCCCCccc
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF-DC-HAWVEESLL-YDADQILYDIIKFVMPSSRLSE 88 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F-~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~ 88 (243)
.++++.+..-. ..+.++|+|.+|+|||||++.+++ .+.... +. ++|+.+.+. ....+++..+...+..+..+..
T Consensus 121 ~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 34555555433 335678999999999999999888 444332 33 356666554 4678888888887776543211
Q ss_pred c---cChhhhhHHHHHHHHh--CCCeEEEEEeCCC
Q 045180 89 I---MEESSEMKKIILHEYL--MTKRYLIVLDNVW 118 (243)
Q Consensus 89 ~---~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~ 118 (243)
. ....... ..+.+++ .+++++||+|++.
T Consensus 198 ~~~~~~v~~~~--~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELV--LERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHH--HHHHHHHHHcCCCEEEEEeCcH
Confidence 1 1111111 2222222 5789999999994
No 137
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=5.8e-05 Score=69.31 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=38.1
Q ss_pred CCcccchhhHHHHHHHHhcCC---CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGP---PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~---~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|-++.++++..++.... ...+++.|+|++|+||||+++.++.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 357888999999999887642 2346799999999999999999987
No 138
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=3.4e-05 Score=69.05 Aligned_cols=46 Identities=26% Similarity=0.251 Sum_probs=36.2
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
++.|.++.++++.+.+..+ -..++-+.++|++|+|||++|+.+++.
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 4668899999988876421 124567899999999999999999983
No 139
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.81 E-value=0.00015 Score=54.60 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY 67 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 67 (243)
++.|+|++|+|||+++..++. .....-..++++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 367999999999999999877 333334467777766543
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.80 E-value=0.00029 Score=67.25 Aligned_cols=132 Identities=14% Similarity=0.198 Sum_probs=71.4
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILY 74 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 74 (243)
..++|.+..+..+.+.+... ......+.++|++|+|||+||+.+++ .+-..-...+-++.+.-.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~---- 582 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKH---- 582 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccc----
Confidence 46889999999998888632 11234678899999999999999887 332211233334433321111
Q ss_pred HHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCe-EEEEEeCCCCc--chhhHHHhhCCCC-----------CCCcEEE
Q 045180 75 DIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKR-YLIVLDNVWRI--SVWDVIREILPDS-----------QNGSRVL 140 (243)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~--~~~~~l~~~l~~~-----------~~~~~ii 140 (243)
.+..-++.+. .-...++ . ..+.+.++.++ .++++|+++.. +.++.+...+-.+ ..++-+|
T Consensus 583 ~~~~l~g~~~---gyvg~~~-~--~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 583 TVSKLIGSPP---GYVGYNE-G--GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred cHHHhcCCCC---cccCcCc-c--chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 1111122211 1001111 1 23444444444 58889999754 4455555554432 1355566
Q ss_pred EeeCc
Q 045180 141 ITLSR 145 (243)
Q Consensus 141 iTtR~ 145 (243)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 66654
No 141
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.79 E-value=5.7e-05 Score=70.92 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=37.4
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|-++.++.|.+.+... ......+.++|++|+|||.+|+.++.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999888732 12345789999999999999999987
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.79 E-value=0.00031 Score=65.26 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=37.4
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..+..|.+.+..+. -...+.++|+.|+|||++|+.+++
T Consensus 19 dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk 62 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFAN 62 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 57899999999999998763 356678999999999999998876
No 143
>PRK09087 hypothetical protein; Validated
Probab=97.78 E-value=8.4e-05 Score=60.00 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.+.|+|++|+|||+|++.+++
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998887
No 144
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.5e-05 Score=66.96 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=61.2
Q ss_pred CcccchhhHHHHHHHHhcC---C-------CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 045180 3 DTVGLDNKMEELLDLLTEG---P-------PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQI 72 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~---~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 72 (243)
++=|.++.+++|.+++..- + ..++-|.+||++|+|||.||+.+++ +..=.| +.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp------ 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP------ 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch------
Confidence 3457888888888877542 1 3567899999999999999999999 443222 333322
Q ss_pred HHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 73 LYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 73 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
+|+.... ..+++.+. +.+.+....-++++++|+++
T Consensus 258 --eivSGvS-------GESEkkiR--elF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 --EIVSGVS-------GESEKKIR--ELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred --hhhcccC-------cccHHHHH--HHHHHHhccCCeEEEeeccc
Confidence 2232222 22344555 55566667789999999995
No 145
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00015 Score=67.49 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=70.4
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH--
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQI-- 72 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~-- 72 (243)
...+|.++.+..+.+.+... ..+.......|+.|+|||.||+.++. .+-..=+..+-+ |+.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~------DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRI------DMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceee------chHHHHH
Confidence 45789999999999888653 23456778899999999999999877 332111233333 33332
Q ss_pred HHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeE-EEEEeCCCCc--chhhHHHhhCCC
Q 045180 73 LYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRY-LIVLDNVWRI--SVWDVIREILPD 132 (243)
Q Consensus 73 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~--~~~~~l~~~l~~ 132 (243)
-+.+.+-+|.+.. .- ..++ - -.+-+.++.++| +|.||++... +.++-+...+-+
T Consensus 563 kHsVSrLIGaPPG--YV-Gyee-G--G~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 563 KHSVSRLIGAPPG--YV-GYEE-G--GQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHhCCCCC--Cc-eecc-c--cchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2223333343322 11 1111 2 345566667777 7778999754 456666665554
No 146
>PRK07261 topology modulation protein; Provisional
Probab=97.78 E-value=0.00011 Score=56.60 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.0014 Score=55.50 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=37.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+...+.+.+.+..+. -.....++|+.|+||+++|..+++
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~ 48 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIE 48 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999998763 347899999999999999977765
No 148
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.77 E-value=0.00022 Score=57.10 Aligned_cols=102 Identities=19% Similarity=0.080 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh----CCCCCccc
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFV----MPSSRLSE 88 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l----~~~~~~~~ 88 (243)
.|-+.|..+=....++.|.|.+|+|||++|.+++. .....-..++|++....+. +-+.++.... ........
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~ 82 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFE 82 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEe
Confidence 34444443434568999999999999999999877 3333334677887655443 3333333321 10000001
Q ss_pred ccChhhhh-HHHHHHHHhCCCeEEEEEeCCC
Q 045180 89 IMEESSEM-KKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 89 ~~~~~~~~-~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
..+..+.. ....+...+..+.-++|+|.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 83 PMDFNEQGRAIQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEechH
Confidence 11112222 0034444444446689999984
No 149
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.77 E-value=0.00023 Score=62.31 Aligned_cols=95 Identities=20% Similarity=0.126 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLM 106 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 106 (243)
++.|.|+-++||||+++.+.. ...+. .+++...+...... ...+.. ..+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~--~~~~~---~iy~~~~d~~~~~~-------------------~l~d~~--~~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK--GLLEE---IIYINFDDLRLDRI-------------------ELLDLL--RAYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHh--hCCcc---eEEEEecchhcchh-------------------hHHHHH--HHHHHhhc
Confidence 999999999999999977666 33222 45554433221110 001111 22222222
Q ss_pred CCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcccc
Q 045180 107 TKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEI 148 (243)
Q Consensus 107 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 148 (243)
.++..++||.|.....|+.....+.+..+. +|++|+.+...
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~l 133 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSL 133 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhh
Confidence 277899999999999999988888777655 88888777544
No 150
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.4e-05 Score=68.93 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=65.0
Q ss_pred CCCcccchhhHHHHHHHHhcC----CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 045180 1 NRDTVGLDNKMEELLDLLTEG----PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 1 ~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 76 (243)
|++-+|.++..+++++.+.-. ..+.++++.+|++|+|||++|+.+++ ...+.| +-++++.-.|..++-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhhc---
Confidence 456789999999999988643 34678999999999999999999998 666666 223444444443321
Q ss_pred HHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCC
Q 045180 77 IKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWR 119 (243)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 119 (243)
++...=-......+. +.++. .+..+-|+.+|.|+.
T Consensus 482 -----GHRRTYVGAMPGkiI--q~LK~-v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 482 -----GHRRTYVGAMPGKII--QCLKK-VKTENPLILIDEVDK 516 (906)
T ss_pred -----ccceeeeccCChHHH--HHHHh-hCCCCceEEeehhhh
Confidence 111000011112233 33322 234677899999863
No 151
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.75 E-value=2.9e-05 Score=66.25 Aligned_cols=46 Identities=13% Similarity=0.323 Sum_probs=39.9
Q ss_pred CcccchhhHHHHHHHHhcC----CCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 3 DTVGLDNKMEELLDLLTEG----PPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++|.++.++++++.+... +...++++++|++|+||||||..+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999998663 235689999999999999999999873
No 152
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.74 E-value=0.00013 Score=56.16 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=34.0
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+||....+.++.+.+..-.....-|.|+|..|+||+.+|+.+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888889998888776433446788999999999999999987
No 153
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.74 E-value=0.00012 Score=61.85 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=59.4
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cc
Q 045180 14 LLDLLT-EGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EI 89 (243)
Q Consensus 14 l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~ 89 (243)
|-.+|. .+=+..+++.|+|++|+||||||.+++. .....-..++|++....++.. .++.++...... ..
T Consensus 43 LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p 115 (321)
T TIGR02012 43 LDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQP 115 (321)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecC
Confidence 333443 3334668999999999999999988776 343344567788776655442 345555432211 22
Q ss_pred cChhhhhHHHHHHHHhC-CCeEEEEEeCCC
Q 045180 90 MEESSEMKKIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 90 ~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
.+.++.. ..+...++ +..-++|+|.+.
T Consensus 116 ~~~eq~l--~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 116 DTGEQAL--EIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred CCHHHHH--HHHHHHhhccCCcEEEEcchh
Confidence 3445555 56655553 456689999984
No 154
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.73 E-value=0.00065 Score=51.55 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=61.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC---CCCHHHHHHHHH--H--HhCCCC----Ccc--cccCh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL---LYDADQILYDII--K--FVMPSS----RLS--EIMEE 92 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~--~--~l~~~~----~~~--~~~~~ 92 (243)
..|-|++..|.||||+|...+- +...+-..+.++.+-. .......+..+- . ..+... ... .....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4678888899999999977665 3333332344433322 223333333320 0 000000 000 00011
Q ss_pred hhhhHHHHHHHHhCC-CeEEEEEeCCCCc-----chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 93 SSEMKKIILHEYLMT-KRYLIVLDNVWRI-----SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 93 ~~~~~~~~l~~~l~~-~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
.+.. +..++.+.. .-=|+|||++-.. -..+++...+.....+..+|+|.|+.
T Consensus 81 ~~~~--~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGW--AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHH--HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223 444444544 3449999998432 24456666666666688999999983
No 155
>PRK09354 recA recombinase A; Provisional
Probab=97.73 E-value=0.00013 Score=62.18 Aligned_cols=96 Identities=20% Similarity=0.096 Sum_probs=61.1
Q ss_pred HHHHHh-cCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cc
Q 045180 14 LLDLLT-EGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EI 89 (243)
Q Consensus 14 l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~ 89 (243)
|-.+|. .+=+..+++-|+|++|+||||||.+++. .....-..++|++....++. ..++.++...... ..
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp 120 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQP 120 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecC
Confidence 334444 3334578999999999999999988876 34444457889988776664 2345555432211 22
Q ss_pred cChhhhhHHHHHHHHhC-CCeEEEEEeCCC
Q 045180 90 MEESSEMKKIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 90 ~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
.+.++.. ..+...++ +..-++|+|.+.
T Consensus 121 ~~~Eq~l--~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 121 DTGEQAL--EIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred CCHHHHH--HHHHHHhhcCCCCEEEEeChh
Confidence 3445555 55555554 356689999985
No 156
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.72 E-value=0.00012 Score=61.84 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHH
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKI 99 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~ 99 (243)
+..+++-|+|++|+||||||.+++. .....-..++|++....++.. .++.++.+...- ...+.++.. .
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l--~ 123 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQAL--E 123 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHH--H
Confidence 4568999999999999999998776 333344567888876655542 344444332111 222445556 6
Q ss_pred HHHHHhC-CCeEEEEEeCCC
Q 045180 100 ILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 100 ~l~~~l~-~~~~LlvlDdv~ 118 (243)
.+...++ +..-++|+|.+.
T Consensus 124 i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHhccCCCEEEEcchH
Confidence 6655554 346689999974
No 157
>PRK07667 uridine kinase; Provisional
Probab=97.72 E-value=7.9e-05 Score=58.64 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++.+.+........+|+|.|.+|+||||+|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5667777776655678999999999999999999887
No 158
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00015 Score=60.44 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=51.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccc--cccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVK--YYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
.|+|.++|++|.|||+|++.+++...++ +.|....-+.+.. ..++ .+.... ...-...+. +++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLF----SKWFsE----SgKlV~kmF--~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLF----SKWFSE----SGKLVAKMF--QKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHH----HHHHhh----hhhHHHHHH--HHHH
Confidence 5899999999999999999999976444 3444444444432 2222 222222 122345566 8888
Q ss_pred HHhCCCeEEE--EEeCCC
Q 045180 103 EYLMTKRYLI--VLDNVW 118 (243)
Q Consensus 103 ~~l~~~~~Ll--vlDdv~ 118 (243)
+.+.++..|+ .+|.|.
T Consensus 243 ELv~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVE 260 (423)
T ss_pred HHHhCCCcEEEEEeHHHH
Confidence 8888776544 468884
No 159
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.0011 Score=56.60 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
-...+.++|+.|+|||++|..+++
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHH
Confidence 466788999999999999988876
No 160
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.71 E-value=0.00057 Score=56.42 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQI 72 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 72 (243)
++++...+..+ +-+.+.|++|+|||++|+.+++ .... ....++.....+..++
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHH
Confidence 34444444443 4677999999999999999986 3322 2334455444444444
No 161
>PRK06620 hypothetical protein; Validated
Probab=97.71 E-value=0.00013 Score=58.37 Aligned_cols=23 Identities=13% Similarity=-0.113 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+.+.|+|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999987773
No 162
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.71 E-value=9.4e-05 Score=54.90 Aligned_cols=44 Identities=25% Similarity=0.143 Sum_probs=32.6
Q ss_pred ccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 5 VGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
||+-..++++.+.+..-.....-|.|+|..|+||+++|+.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 57777888888877664334567899999999999999988773
No 163
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.70 E-value=7.1e-05 Score=57.88 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=29.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEE
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWV 61 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv 61 (243)
...+|.+.|++|+||||+|+.+++ +....+....++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 457999999999999999999988 665556555555
No 164
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.69 E-value=0.00033 Score=56.76 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=59.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc------
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS------ 87 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------ 87 (243)
|-+.|..+-+...++.|.|.+|+|||+++.++.. .....-..++|++.... ..++..++ ..++......
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~--~~~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l 88 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVY--GALKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYL 88 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHH--HHHhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCc
Confidence 3444444434678999999999999999999865 22223347888887653 44555443 3333221100
Q ss_pred ------------cccChhhhhHHHHHHHHhCC-CeEEEEEeCCC
Q 045180 88 ------------EIMEESSEMKKIILHEYLMT-KRYLIVLDNVW 118 (243)
Q Consensus 88 ------------~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 118 (243)
...+.+++. ..+.+.+.. +.-++|+|.+.
T Consensus 89 ~i~~~~~~~~~~~~~~~~~ll--~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 89 RIFPLNTEGFEWNSTLANKLL--ELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred eEEeccccccccCcchHHHHH--HHHHHHHHhcCCCEEEEecHH
Confidence 112234566 666666654 55689999975
No 165
>CHL00176 ftsH cell division protein; Validated
Probab=97.67 E-value=8.9e-05 Score=68.39 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=32.7
Q ss_pred CcccchhhHHHHHHHH---hcCC-------CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLL---TEGP-------PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L---~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|.++..+++.+.+ .... ..++-+.++|++|+|||+||+.+++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4677777666665543 2221 2355699999999999999999988
No 166
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00026 Score=59.79 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=75.2
Q ss_pred ccchhhHHHHHHHHhcC----C-------CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 045180 5 VGLDNKMEELLDLLTEG----P-------PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQIL 73 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~----~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 73 (243)
=|-++++++|.+...-+ + +.++-|.++|++|.|||-||+++++ +....| +.+..
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg-------- 218 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG-------- 218 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc--------
Confidence 36788888888876443 1 4678899999999999999999999 666555 22221
Q ss_pred HHHHHHhCCCCCcccccChhhhhHHHHHHHHhCC-CeEEEEEeCCCCc-------------ch---hhHHHhhCCC--CC
Q 045180 74 YDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMT-KRYLIVLDNVWRI-------------SV---WDVIREILPD--SQ 134 (243)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~-------------~~---~~~l~~~l~~--~~ 134 (243)
.++++..-+... .+. ..+.+.-+. .++.|.+|.++.. +. .-+|...+-. ..
T Consensus 219 SElVqKYiGEGa--------RlV--RelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 SELVQKYIGEGA--------RLV--RELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred HHHHHHHhccch--------HHH--HHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 233343333332 233 444444444 5888999988521 11 1123333322 23
Q ss_pred CCcEEEEeeCcccccccc
Q 045180 135 NGSRVLITLSRIEIVASF 152 (243)
Q Consensus 135 ~~~~iiiTtR~~~~~~~~ 152 (243)
.+.|||..|-..++....
T Consensus 289 ~nvKVI~ATNR~D~LDPA 306 (406)
T COG1222 289 GNVKVIMATNRPDILDPA 306 (406)
T ss_pred CCeEEEEecCCccccChh
Confidence 467999998877665443
No 167
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00065 Score=58.02 Aligned_cols=134 Identities=9% Similarity=0.052 Sum_probs=68.2
Q ss_pred Cccc-chhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 3 DTVG-LDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 3 ~~vG-R~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
.++| -+...+.|.+.+..+. -.....++|+.|+|||++|..+.+..--.+..... ++......+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 3566 5556677777776552 45677999999999999998886621111101000 0000011111111000
Q ss_pred CCCC----cccccChhhhhHHHHHHHH----hCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 82 PSSR----LSEIMEESSEMKKIILHEY----LMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 82 ~~~~----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
+... +......+++. +..... ..+.+-++|+|+++.. +..+.+...+-..+.++.+|++|.+.
T Consensus 78 pD~~~i~~~~~~i~id~ir--~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR--YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred CCEEEeccccccCCHHHHH--HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 0000 00112223333 222211 1244557889998654 45667777777666677777777653
No 168
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.64 E-value=3.6e-05 Score=55.51 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|++|+||||+|+.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 169
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.64 E-value=5.4e-05 Score=61.93 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG---PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.++..++|.=.+... ....-.+.++|++|.||||||.-+++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence 36899999988887776653 34677899999999999999999998
No 170
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.62 E-value=0.00033 Score=66.14 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=33.8
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|.++..++|.+.+..+ -..++-+.++|++|+|||++|+.+++
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3567777777777765421 12355689999999999999999998
No 171
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.61 E-value=0.00015 Score=68.40 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|.++.++++.+.+... -...+.+.++|++|+|||+||+.+++
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 4678999999988876421 02356789999999999999999988
No 172
>PHA00729 NTP-binding motif containing protein
Probab=97.60 E-value=0.00031 Score=56.28 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=24.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+.+... +...+.|+|.+|+|||+||..+.+
T Consensus 8 ~~~~l~~~--~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 8 IVSAYNNN--GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHhcC--CeEEEEEECCCCCCHHHHHHHHHH
Confidence 34444444 456789999999999999999888
No 173
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.59 E-value=0.00018 Score=56.85 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL 105 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 105 (243)
..+.|.|+.|+||||++..+.+ .+.......++.-- .+... .... ...+-.... ...+..... +.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~e-~~~E~--~~~~-~~~~i~q~~--vg~~~~~~~--~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTIE-DPIEF--VHES-KRSLINQRE--VGLDTLSFE--NALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEEc-CCccc--cccC-ccceeeecc--cCCCccCHH--HHHHHHh
Confidence 4789999999999999988777 44333333443322 21110 0000 000000000 011223345 7777878
Q ss_pred CCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcccc
Q 045180 106 MTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEI 148 (243)
Q Consensus 106 ~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 148 (243)
+..+=.+++|++.+.+......... ..|..++.|+-....
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 7778899999998776655544332 224457776655443
No 174
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.59 E-value=0.00047 Score=58.78 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|+...+.++.+.+..-.....-|.|+|.+|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999888876543456788999999999999998875
No 175
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.59 E-value=0.00011 Score=57.95 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL-YDADQILYDIIKFVMPS 83 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 83 (243)
++++.++|+.|+||||.+-+++. +....-..+..++.... ....+-++..++.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 47899999999999998777766 33333335556665432 24455566777777655
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.00038 Score=60.44 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=63.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
....+.|+|+.|.|||.|++.+.+ ......+....+.+ +.......++..+.... . +.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~~~-----------~--~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRDNE-----------M--EKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHhhh-----------H--HHHHH
Confidence 467899999999999999999998 66666653333332 44555666665554322 2 56666
Q ss_pred HhCCCeEEEEEeCCCCc---ch-hhHHHhhCCCC-CCCcEEEEeeCcc
Q 045180 104 YLMTKRYLIVLDNVWRI---SV-WDVIREILPDS-QNGSRVLITLSRI 146 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~---~~-~~~l~~~l~~~-~~~~~iiiTtR~~ 146 (243)
.. .-=++++||++-. +. -+.+...+..- ..|..||+|++..
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 66 3338889999642 11 23333333221 2244899998764
No 177
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.58 E-value=0.00041 Score=65.07 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=37.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|+...+.++.+.+..-.....-|.|.|.+|+|||.+|+.+++
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~ 421 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHN 421 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 588999999998877765433456789999999999999999877
No 178
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.58 E-value=0.00018 Score=59.22 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-------cccCh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY----YFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS-------EIMEE 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 92 (243)
...+.=|+|.+|+|||+|+.+++-...+.. .-..++|++-...++...+. +|++..+...... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 457889999999999999987764222221 12368999998888876654 4666554322110 11223
Q ss_pred hhhhH-HHHHHHHhC-CCeEEEEEeCCC
Q 045180 93 SSEMK-KIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 93 ~~~~~-~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
+++.. ...+...+. .+--|||+|.+.
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 33330 033333332 345599999983
No 179
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.57 E-value=0.0001 Score=64.92 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
++.|.++.+++|.+.+... -..++.+.++|++|+|||++|+.+++ +....|
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 3568888888888876421 12456788999999999999999998 554444
No 180
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.57 E-value=0.00065 Score=57.72 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=56.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-------cccC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY----FDCHAWVEESLLYDADQILYDIIKFVMPSSRLS-------EIME 91 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 91 (243)
....++-|+|++|+|||+++.+++........ -..++|++....++...+. ++++.++...... ...+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCC
Confidence 35788999999999999999888753222111 1378999998877776654 3445554332110 0011
Q ss_pred ---hhhhhHHHHHHHHhCC--CeEEEEEeCCC
Q 045180 92 ---ESSEMKKIILHEYLMT--KRYLIVLDNVW 118 (243)
Q Consensus 92 ---~~~~~~~~~l~~~l~~--~~~LlvlDdv~ 118 (243)
...+. ..+...+.. +--|||+|.+.
T Consensus 179 ~~~~~~~~--~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 179 SDHQMLLA--EKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHH--HHHHHHHhccCceeEEEEECch
Confidence 11233 555555543 34489999984
No 181
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0015 Score=56.70 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++++++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 458999999999999999988876
No 182
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.52 E-value=0.00033 Score=55.96 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=45.5
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccc--ccceeEEEEeCCCCCHHH
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKY--YFDCHAWVEESLLYDADQ 71 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~F~~~~wv~~~~~~~~~~ 71 (243)
++||-++-++.+.-.-.++ +..-+.|.||+|+||||-+..+++ +.-. +-++++=++.++...++-
T Consensus 28 dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr--~LLG~~~ke~vLELNASdeRGIDv 94 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAR--ELLGDSYKEAVLELNASDERGIDV 94 (333)
T ss_pred HhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHH--HHhChhhhhHhhhccCccccccHH
Confidence 5789998888887766665 567788999999999998877777 3322 223555556665544433
No 183
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.51 E-value=0.00054 Score=58.59 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=56.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccc---c-ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-------cccC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVK---Y-YFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS-------EIME 91 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~ 91 (243)
....+.-|+|.+|+|||+|+.+++-..... . .-..++|++....++...+.+ +++.++.+.... ...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 456788899999999999998875322221 1 123789999998888777544 566666543210 1122
Q ss_pred hhhhh-HHHHHHHHhC-CCeEEEEEeCCC
Q 045180 92 ESSEM-KKIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 92 ~~~~~-~~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
.++.. -...+...+. .+--|||+|.+.
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 23222 0033333332 334589999984
No 184
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.50 E-value=0.00064 Score=57.53 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=58.5
Q ss_pred HHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-----
Q 045180 17 LLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVK----YYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS----- 87 (243)
Q Consensus 17 ~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----- 87 (243)
.|..+=....+.-|+|++|+|||+|+.+++-..... ..-..++|++....++.+.+. ++++.++......
T Consensus 88 lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~ 166 (313)
T TIGR02238 88 ILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNIL 166 (313)
T ss_pred HhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEE
Confidence 343332456888999999999999998765321221 112368899998888777764 4566665542210
Q ss_pred --cccChhhhh-HHHHHHHHhC-CCeEEEEEeCCC
Q 045180 88 --EIMEESSEM-KKIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 88 --~~~~~~~~~-~~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
...+.+... ....+...+. .+--|+|+|.+.
T Consensus 167 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 167 YARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 111222222 0033333343 345589999984
No 185
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.49 E-value=0.00048 Score=56.86 Aligned_cols=92 Identities=12% Similarity=0.180 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----ccc-Chh---
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD-CHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIM-EES--- 93 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~-~~~--- 93 (243)
+-+.++|.|.+|+|||+|+..+++ .++.+|. .++++-+.... ...++...+...-......- .+. ...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999999999998 6665564 45566665554 34455555543211110000 111 111
Q ss_pred --hhhHHHHHHHHh---CCCeEEEEEeCCCC
Q 045180 94 --SEMKKIILHEYL---MTKRYLIVLDNVWR 119 (243)
Q Consensus 94 --~~~~~~~l~~~l---~~~~~LlvlDdv~~ 119 (243)
... -.+.+++ .++++|+++||+..
T Consensus 146 ~~~~a--~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTG--LTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHH--HHHHHHHHHhcCCeEEEEEeChhH
Confidence 111 2334444 38899999999943
No 186
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.48 E-value=0.00011 Score=66.32 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=32.3
Q ss_pred CcccchhhHHHHHHHHh---cC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLT---EG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|-++..+++.+.+. .. ...++-+.++|++|+|||++|+.+++
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 46677776666655443 21 12355689999999999999999988
No 187
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.47 E-value=0.0028 Score=53.37 Aligned_cols=184 Identities=12% Similarity=0.014 Sum_probs=96.8
Q ss_pred CcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcC-cccccccceeEEEEeCCCCCH-HHHHHHHHH
Q 045180 3 DTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSS-NYVKYYFDCHAWVEESLLYDA-DQILYDIIK 78 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~-~~~~~~F~~~~wv~~~~~~~~-~~~~~~i~~ 78 (243)
.++|-.++..++-.++... .....-|.|.|+.|+|||.|......+ +++.++ .+-+........ .-.+..|.+
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHHH
Confidence 5789999999998888653 123456788999999999998776664 223333 334444444332 224555555
Q ss_pred HhCCCCCcc--cccChhhhhHHHHHHHHhCC------CeEEEEEeCCCCcc-------hhhHHHhhCCCCCCCcEEEEee
Q 045180 79 FVMPSSRLS--EIMEESSEMKKIILHEYLMT------KRYLIVLDNVWRIS-------VWDVIREILPDSQNGSRVLITL 143 (243)
Q Consensus 79 ~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~------~~~LlvlDdv~~~~-------~~~~l~~~l~~~~~~~~iiiTt 143 (243)
++....... ...+..+.. ..+-..|+. -++++|+|.++-.. -++.+...-....+-|-|-+||
T Consensus 102 ql~~e~~~~~k~~gsfte~l--~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENL--SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHhhhheeecccchhH--HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 554332211 223333334 445555532 36788888875321 1112212222234566778888
Q ss_pred Cccccccccc-----ccC------CCCCChhhhhhhhHHHHhcCCchhHHHHHHHHHHHHh
Q 045180 144 SRIEIVASFQ-----FEN------GENIGLDFLSTGGPLRVTYQGWPFHILYHESISLKEN 193 (243)
Q Consensus 144 R~~~~~~~~~-----f~~------~~~~~~~~~~~~~~i~~~c~glPlai~~~~w~~~~~~ 193 (243)
|-.-...... |+. ....-+++..+.+.+...-.|.|.++. .|+.-.+.
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v~~e~~~~~~--~wn~~~~~ 238 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSVPAEFSDFAE--KWNRSVQE 238 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcCCccCccHHH--HHHhhhhH
Confidence 8753322111 655 222234445555555544445444222 66644443
No 188
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.46 E-value=0.00015 Score=65.25 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=38.8
Q ss_pred CcccchhhHHHHHHHHhc----CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTE----GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++.++++++.|.. -+...+++.++|++|+|||+||..+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 579999999999998832 244678999999999999999999887
No 189
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.0011 Score=51.40 Aligned_cols=55 Identities=15% Similarity=0.334 Sum_probs=34.7
Q ss_pred HHHHHHhCCCeEEEEEeC----CCCcchhhHHHhhCCCCCCCcEEEEeeCccccccccc
Q 045180 99 IILHEYLMTKRYLIVLDN----VWRISVWDVIREILPDSQNGSRVLITLSRIEIVASFQ 153 (243)
Q Consensus 99 ~~l~~~l~~~~~LlvlDd----v~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~ 153 (243)
-.+.+.+-+++-+|+-|. ++..-.|+-+...---+..|+.||++|-+..+...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 455666667888888885 4333445433322222445899999999987765543
No 190
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.46 E-value=0.001 Score=60.16 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=39.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|+...+.++.+.+..-.....-|.|+|..|+|||++|+.+++
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~ 232 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHA 232 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 3589999999999888877544567799999999999999999887
No 191
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00017 Score=54.23 Aligned_cols=46 Identities=22% Similarity=0.136 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSR 85 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 85 (243)
+|.|.|++|+||||+|+.++.+ ..-.| .+...+++++++..+.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~~-----------vsaG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLKL-----------VSAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCce-----------eeccHHHHHHHHHcCCCHH
Confidence 6899999999999999999883 32111 1445688899988887643
No 192
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.45 E-value=0.00067 Score=58.75 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=54.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cc
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EI 89 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~ 89 (243)
+|-+.|..+-....++.|.|.+|+|||||+.+++. .....-..++|++... +..++. .-+..++...... ..
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EE--s~~qi~-~Ra~rlg~~~~~l~l~~e 144 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEE--SPEQIK-LRADRLGISTENLYLLAE 144 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCc--CHHHHH-HHHHHcCCCcccEEEEcc
Confidence 33344443323457999999999999999998887 3433334677877644 333332 2244555433211 11
Q ss_pred cChhhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 90 MEESSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
.+.+.+. +.+. ..+.-++|+|.+.
T Consensus 145 ~~le~I~--~~i~---~~~~~lVVIDSIq 168 (372)
T cd01121 145 TNLEDIL--ASIE---ELKPDLVIIDSIQ 168 (372)
T ss_pred CcHHHHH--HHHH---hcCCcEEEEcchH
Confidence 2223333 3332 2356689999984
No 193
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00013 Score=66.62 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=44.0
Q ss_pred CCCcccchhhHHHHHHHHhcC----CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 1 NRDTVGLDNKMEELLDLLTEG----PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 1 ~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
|.+-+|.++..++|++.|.-. .-...+++++|++|+|||+|++.+++ ...+.|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 456789999999999988642 23457999999999999999999999 777776
No 194
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.45 E-value=0.00043 Score=65.73 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=39.5
Q ss_pred CCcccchhhHHHHHHHHhc----CCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 2 RDTVGLDNKMEELLDLLTE----GPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
.+.+|.++..+++.+.+.. ...+..++.++|++|+|||++|+.+++ .....|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCe
Confidence 4578999999998886642 222345799999999999999999998 554444
No 195
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.45 E-value=0.00015 Score=64.14 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHH
Confidence 46899999999999999877 4688999999999999999887
No 196
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.44 E-value=0.0012 Score=53.67 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYD 75 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 75 (243)
.|-+.|..+=+...++.|.|.+|+|||++|.++.. .....-..++|++... +..++.+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeC--CHHHHHHH
Confidence 34444555444678999999999999999988665 2223345788887655 44555554
No 197
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.44 E-value=0.0021 Score=51.61 Aligned_cols=98 Identities=18% Similarity=0.173 Sum_probs=61.3
Q ss_pred CcccchhhHHHHHHHH---hcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 3 DTVGLDNKMEELLDLL---TEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L---~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
.++|-+...+.|.+-- ..+. .-.-|.+||.-|+|||+|++.+.+ .+...+-. -|.+..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~-pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k-------------- 121 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGL-PANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDK-------------- 121 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCC-cccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcH--------------
Confidence 4678777777776533 2222 345688999999999999999988 55555433 233322
Q ss_pred hCCCCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc---chhhHHHhhCCC
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI---SVWDVIREILPD 132 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~---~~~~~l~~~l~~ 132 (243)
+++.+...+.+.|+ ..|+.|..||+.=+ +.+..++..+-.
T Consensus 122 -------------~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 122 -------------EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -------------HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 12221244445554 56899999999532 456667666643
No 198
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.44 E-value=0.00099 Score=60.71 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=37.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|....+.++.+.+..-.....-|.|+|.+|+|||++|+.+++
T Consensus 197 ~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~ 241 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHY 241 (534)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHH
Confidence 679999999999888865433456688999999999999999887
No 199
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.43 E-value=0.00078 Score=52.31 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE---eCCCCCHHH------HHHHHHHHhCCCCCcc---cccC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVE---ESLLYDADQ------ILYDIIKFVMPSSRLS---EIME 91 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~~~~---~~~~ 91 (243)
...+++|.|..|+|||||.+.++.- .. ...+.+++. +.. .+... ...++++.++...... ...+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~--~~-~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL--LK-PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--CC-CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 4568999999999999999998873 22 233434332 211 12211 1122444444432110 1122
Q ss_pred hhhhhHHHHHHHHhCCCeEEEEEeCCCCc---chhhHHHhhCCCC-CC-CcEEEEeeCcccc
Q 045180 92 ESSEMKKIILHEYLMTKRYLIVLDNVWRI---SVWDVIREILPDS-QN-GSRVLITLSRIEI 148 (243)
Q Consensus 92 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~l~~~l~~~-~~-~~~iiiTtR~~~~ 148 (243)
..+.. +-.+...+...+-++++|+.... ...+.+...+... .. +..||++|.+...
T Consensus 100 ~G~~q-rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 GGERQ-RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHH-HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 22211 13455556667789999987533 2333333333221 11 5678888876543
No 200
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.41 E-value=0.00092 Score=56.69 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=58.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc--
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKY----YFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS-- 87 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-- 87 (243)
|-+.|..+=....++.|+|.+|+|||+|+..++....... .-..++|++....++... +.++++.++......
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~ 163 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLD 163 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhc
Confidence 3334444334578999999999999999988765211111 112578999887777665 444555554432110
Q ss_pred -----cccChhhhh-HHHHHHHHhC-CCeEEEEEeCCC
Q 045180 88 -----EIMEESSEM-KKIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 88 -----~~~~~~~~~-~~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
...+.++.. ....+...+. .+--|||+|.+.
T Consensus 164 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 164 NVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred cEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 111223322 0033333343 345689999984
No 201
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.39 E-value=0.00067 Score=60.76 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++-|.++|++|+|||.+|+.+++
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHH
Confidence 467799999999999999999988
No 202
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0014 Score=58.26 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhcCC-------CCceEEEEEcCCCCcHHHHHHHHhcCc
Q 045180 9 NKMEELLDLLTEGP-------PQLSVVAILDSIGLDKTAFAVEAYSSN 49 (243)
Q Consensus 9 ~~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~ 49 (243)
+|++++++.|.++. .=++-|.++|++|.|||-||+.++...
T Consensus 314 ~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 314 QELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred HHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 46677777887752 236779999999999999999999843
No 203
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.39 E-value=0.0012 Score=56.32 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=36.2
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++|+...+.++.+.+..-.....-|.|+|.+|+||+++|+.+++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~ 44 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHY 44 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHH
Confidence 57888888888888776543456789999999999999998876
No 204
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.38 E-value=0.0013 Score=55.74 Aligned_cols=59 Identities=7% Similarity=0.103 Sum_probs=40.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKY----YFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
....++-|+|.+|+|||+++.+++....... .-..++|++....++...+. +++..++.
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 3568889999999999999988876322211 11278999998877776644 44555443
No 205
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.38 E-value=0.00087 Score=55.98 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=46.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
..++++++|++|+||||++..++.....+..-..+..++..... ...+-+....+.++.+.. ...+..++. +.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~--~~l~ 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELR--KALD 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHH--HHHH
Confidence 46799999999999999998887732222111245555544321 223333444444454432 222333344 4444
Q ss_pred HHhCCCeEEEEEeCC
Q 045180 103 EYLMTKRYLIVLDNV 117 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv 117 (243)
. +.+ .=+|++|..
T Consensus 269 ~-~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 R-LRD-KDLILIDTA 281 (282)
T ss_pred H-ccC-CCEEEEeCC
Confidence 3 333 346777753
No 206
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00048 Score=54.69 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
++.+|+|.|.+|+||||+|+.++. ....+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH--HhCcC
Confidence 568999999999999999999988 55433
No 207
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.37 E-value=0.00071 Score=58.95 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=40.8
Q ss_pred CCCcccchhhHHHHHHHHhcC------------CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 1 NRDTVGLDNKMEELLDLLTEG------------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 1 ~~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
+..++|.++....+...+... +..++.|.++|++|+|||++|+.++. .....|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 356899999999998777642 12357889999999999999999988 444443
No 208
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.36 E-value=0.001 Score=53.75 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+..+++|.|++|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999998887
No 209
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0014 Score=58.16 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=61.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
.+...+.+.|++|+|||+||..++. ...|+.+--++...- .|.+ +......+. ..+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~s----EsaKc~~i~--k~F~ 592 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLS----ESAKCAHIK--KIFE 592 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCcc----HHHHHHHHH--HHHH
Confidence 4677889999999999999999877 556765443321110 0100 111112222 4444
Q ss_pred HHhCCCeEEEEEeCCCCcchh------------hHHHhhCC---CCCCCcEEEEeeCccccccccc
Q 045180 103 EYLMTKRYLIVLDNVWRISVW------------DVIREILP---DSQNGSRVLITLSRIEIVASFQ 153 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~~~~------------~~l~~~l~---~~~~~~~iiiTtR~~~~~~~~~ 153 (243)
+.-+..-..||+||+...-+| ..+.-.+. ..+..--|+-||....+...+.
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~ 658 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMG 658 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcC
Confidence 444555678999999654332 23333332 2233445666777777777766
No 210
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0026 Score=54.97 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccccc--ceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF--DCHAWVEESL-LYDADQILYDIIKFVMPSSRLSEIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F--~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 100 (243)
...+++++|+.|+||||++.+++. +....+ ..+..++... .....+-+....+.++.+.. ...+..++. ..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~--~~~~~~~l~--~~ 209 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH--AVKDGGDLQ--LA 209 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE--ecCCcccHH--HH
Confidence 457999999999999999999887 332222 3455555333 22344556666666665543 222233333 33
Q ss_pred HHHHhCCCeEEEEEeCCC
Q 045180 101 LHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l~~~~~LlvlDdv~ 118 (243)
+. .+.++ -++++|..-
T Consensus 210 l~-~l~~~-DlVLIDTaG 225 (374)
T PRK14722 210 LA-ELRNK-HMVLIDTIG 225 (374)
T ss_pred HH-HhcCC-CEEEEcCCC
Confidence 33 33444 455688774
No 211
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.34 E-value=0.00074 Score=61.93 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=52.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
+..++..++|++|.||||||.-+++. ..| .++=++++...+...+-..|...+..+.-
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s~----------------- 381 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHSV----------------- 381 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhccc-----------------
Confidence 45789999999999999999998882 233 46677888877776666666654433321
Q ss_pred HHh--CCCeEEEEEeCCCCc
Q 045180 103 EYL--MTKRYLIVLDNVWRI 120 (243)
Q Consensus 103 ~~l--~~~~~LlvlDdv~~~ 120 (243)
+ .+++.-||+|.++-.
T Consensus 382 --l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 --LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred --cccCCCcceEEEecccCC
Confidence 1 146677899988654
No 212
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.33 E-value=0.0018 Score=50.15 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999887
No 213
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0038 Score=54.32 Aligned_cols=89 Identities=9% Similarity=-0.032 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccc--cccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVK--YYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLSEIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 100 (243)
.++++.++|+.|+||||.+..++...... .+-..+..++..... ...+-+...++.++.+.. ...+.+.+. ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~--~~ 248 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLK--EE 248 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHH--HH
Confidence 46899999999999999998887622211 112244445544321 122235555555655432 222333333 33
Q ss_pred HHHHhCCCeEEEEEeCCC
Q 045180 101 LHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l~~~~~LlvlDdv~ 118 (243)
+.+. ...-++++|-+.
T Consensus 249 L~~~--~~~DlVLIDTaG 264 (388)
T PRK12723 249 ITQS--KDFDLVLVDTIG 264 (388)
T ss_pred HHHh--CCCCEEEEcCCC
Confidence 3332 234467777764
No 214
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.32 E-value=0.0029 Score=57.90 Aligned_cols=132 Identities=16% Similarity=0.088 Sum_probs=84.0
Q ss_pred cccchhhHHHHHHHHhcC--C-CCceEEEEEcCCCCcHHHHHHHHhcCcc------cccccceeEEEEeCCCCCHHHHHH
Q 045180 4 TVGLDNKMEELLDLLTEG--P-PQLSVVAILDSIGLDKTAFAVEAYSSNY------VKYYFDCHAWVEESLLYDADQILY 74 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~--~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~------~~~~F~~~~wv~~~~~~~~~~~~~ 74 (243)
+=+|+.+..+|...+... . .....+-|.|-+|+|||..+..|.+... -...| ..+.++...-....+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-DYVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-cEEEEcceeecCHHHHHH
Confidence 457999999998887653 2 3455899999999999999999887321 12234 334556666667899999
Q ss_pred HHHHHhCCCCCcccccChhhhhHHHHHHHHhC-----CCeEEEEEeCCCCcch--hhHHHhhCC-CCCCCcEEEEee
Q 045180 75 DIIKFVMPSSRLSEIMEESSEMKKIILHEYLM-----TKRYLIVLDNVWRISV--WDVIREILP-DSQNGSRVLITL 143 (243)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~~--~~~l~~~l~-~~~~~~~iiiTt 143 (243)
.|..++.+.... ..... +.+..+.. .+.+++++|+++..-. -+-+-..|. ...+++|++|-+
T Consensus 477 ~I~~~lsg~~~~-----~~~al--~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 477 KIWEALSGERVT-----WDAAL--EALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHhcccCccc-----HHHHH--HHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999887542 12223 44444443 3578888898853311 112222222 134577776654
No 215
>PTZ00301 uridine kinase; Provisional
Probab=97.32 E-value=0.00039 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57899999999999999988876
No 216
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.32 E-value=0.0027 Score=56.10 Aligned_cols=58 Identities=16% Similarity=0.018 Sum_probs=36.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL-YDADQILYDIIKFVMPS 83 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 83 (243)
++.++.++|.+|+||||++..++. .....-..+..++.... ....+-+..++..++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 478999999999999999988887 34332223333443321 12344456666666554
No 217
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.30 E-value=0.0021 Score=55.06 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=58.9
Q ss_pred HHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc----
Q 045180 16 DLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKY----YFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---- 87 (243)
Q Consensus 16 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---- 87 (243)
+.|..+-....++-|+|.+|+|||+|+..++-...... .-..++|++....++...+ .++++.++......
T Consensus 114 ~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i 192 (342)
T PLN03186 114 KILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENV 192 (342)
T ss_pred HhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccce
Confidence 33443324568889999999999999987764212111 1126899999988877665 45566665443210
Q ss_pred ---cccChhhhh-HHHHHHHHh-CCCeEEEEEeCCC
Q 045180 88 ---EIMEESSEM-KKIILHEYL-MTKRYLIVLDNVW 118 (243)
Q Consensus 88 ---~~~~~~~~~-~~~~l~~~l-~~~~~LlvlDdv~ 118 (243)
...+.+... ....+...+ ..+--|||+|.+.
T Consensus 193 ~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 193 AYARAYNTDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred EEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 112223332 002222223 3355699999984
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.30 E-value=0.00084 Score=56.98 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=71.1
Q ss_pred ccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccc-ccccceeE-E---EEeCCCC-----CHHH---
Q 045180 5 VGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYV-KYYFDCHA-W---VEESLLY-----DADQ--- 71 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~F~~~~-w---v~~~~~~-----~~~~--- 71 (243)
-+|..+..--+++|.++ ....|.+.|.+|+|||-||....-.+-. +..|..++ . +.+++.. ..++
T Consensus 227 ~prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 227 RPRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred CcccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 35677777777888877 4789999999999999988654322111 22333222 1 1122110 1111
Q ss_pred -HHHHHHHHhCCCCCcccccChhhhhHHHHH----------HHHhCCC---eEEEEEeCCCCcchhhHHHhhCCCCCCCc
Q 045180 72 -ILYDIIKFVMPSSRLSEIMEESSEMKKIIL----------HEYLMTK---RYLIVLDNVWRISVWDVIREILPDSQNGS 137 (243)
Q Consensus 72 -~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l----------~~~l~~~---~~LlvlDdv~~~~~~~~l~~~l~~~~~~~ 137 (243)
=++.|...+..-... ..+. .... +.+ ..+.+|+ +.++|+|.+.+..- .+++..+.+.+.||
T Consensus 305 PWmq~i~DnLE~L~~~-~~~~-~~~l--~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~Gs 379 (436)
T COG1875 305 PWMQAIFDNLEVLFSP-NEPG-DRAL--EEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGS 379 (436)
T ss_pred chHHHHHhHHHHHhcc-cccc-hHHH--HHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCC
Confidence 122232222211110 1111 1112 121 1122444 56999999966532 35566677778899
Q ss_pred EEEEeeCcc
Q 045180 138 RVLITLSRI 146 (243)
Q Consensus 138 ~iiiTtR~~ 146 (243)
||+.|---.
T Consensus 380 KIVl~gd~a 388 (436)
T COG1875 380 KIVLTGDPA 388 (436)
T ss_pred EEEEcCCHH
Confidence 999886443
No 219
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.30 E-value=0.0018 Score=57.57 Aligned_cols=97 Identities=20% Similarity=0.102 Sum_probs=55.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---c
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---E 88 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 88 (243)
.+|-+.|..+-....++.|.|.+|+|||||+.+++. .....-..++|++... +..++... ++.++...... .
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~ 141 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLA 141 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeC
Confidence 344444444433467999999999999999999877 3332233577877644 33343322 45555432211 1
Q ss_pred ccChhhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 89 IMEESSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
..+.+++. +.+. ..+.-++|+|.+.
T Consensus 142 e~~l~~i~--~~i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 142 ETNLEAIL--ATIE---EEKPDLVVIDSIQ 166 (446)
T ss_pred CCCHHHHH--HHHH---hhCCCEEEEechh
Confidence 12233333 3332 2355689999984
No 220
>PRK06547 hypothetical protein; Provisional
Probab=97.28 E-value=0.00043 Score=53.43 Aligned_cols=33 Identities=24% Similarity=0.186 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+...+... ...+|+|.|++|+||||+|..+.+.
T Consensus 6 ~~~~~~~~--~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 6 IAARLCGG--GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHhhcC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33444433 6789999999999999999998873
No 221
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.28 E-value=0.0034 Score=55.37 Aligned_cols=24 Identities=17% Similarity=0.093 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.++.++|.+|+||||+|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999877766
No 222
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.27 E-value=0.0013 Score=51.83 Aligned_cols=111 Identities=7% Similarity=0.055 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIM 90 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 90 (243)
..+.+..+... +.++..|.|++|+|||+++..+.. .....-..++.+..+ ......+....+.+..
T Consensus 6 Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~--~~~~~g~~v~~~apT-----~~Aa~~L~~~~~~~a~----- 71 (196)
T PF13604_consen 6 QREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAE--ALEAAGKRVIGLAPT-----NKAAKELREKTGIEAQ----- 71 (196)
T ss_dssp HHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHH--HHHHTT--EEEEESS-----HHHHHHHHHHHTS-EE-----
T ss_pred HHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHH--HHHhCCCeEEEECCc-----HHHHHHHHHhhCcchh-----
Confidence 33444444333 247888999999999999988776 343332233333222 1222234444332211
Q ss_pred ChhhhhHHHHHHHHh----------CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEee
Q 045180 91 EESSEMKKIILHEYL----------MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITL 143 (243)
Q Consensus 91 ~~~~~~~~~~l~~~l----------~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTt 143 (243)
+.. .+.... ..+.-++|+|++... ..+..+....+. .++++|+.=
T Consensus 72 Ti~------~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 72 TIH------SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp EHH------HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred hHH------HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 111 110000 123359999999644 355566666554 366777643
No 223
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.003 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++++.|++|+||||++.+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988876
No 224
>PRK14974 cell division protein FtsY; Provisional
Probab=97.26 E-value=0.0051 Score=52.52 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccc-cceeEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FDCHAWVEESL-LYDADQILYDIIKFVMPSS 84 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 84 (243)
++.++.++|++|+||||++..++. ..... + .+..+.... .....+-+...+..++.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCce
Confidence 468999999999999998887776 33332 3 333343221 1123334556666666543
No 225
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.26 E-value=0.0004 Score=56.42 Aligned_cols=63 Identities=16% Similarity=0.074 Sum_probs=38.1
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQI 72 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 72 (243)
+..++++.+.....+..+|+|+|+||+|||||..++....+-+.+=-.++=|+-+++++-..+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 456777777765556789999999999999999888773222222224555665555554333
No 226
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.25 E-value=0.0034 Score=48.06 Aligned_cols=25 Identities=12% Similarity=-0.001 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...+++|.|+.|+|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999873
No 227
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.24 E-value=0.0013 Score=61.75 Aligned_cols=97 Identities=19% Similarity=0.137 Sum_probs=62.1
Q ss_pred HHHHHHh-cCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---c
Q 045180 13 ELLDLLT-EGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---E 88 (243)
Q Consensus 13 ~l~~~L~-~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 88 (243)
.|-.+|. .+=+..+++-|+|++|+|||+|+.+++. .....-..++|++....++. ..++.++.+.... .
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~ 119 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQ 119 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEec
Confidence 3444444 2334578899999999999999987665 23333356788887776653 3667777654321 2
Q ss_pred ccChhhhhHHHHHHHHhCC-CeEEEEEeCCC
Q 045180 89 IMEESSEMKKIILHEYLMT-KRYLIVLDNVW 118 (243)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 118 (243)
..+.++.. ..+...++. +--|||+|.+.
T Consensus 120 ~~~~E~~l--~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 120 PDTGEQAL--EIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred CCCHHHHH--HHHHHHhhcCCCeEEEEcchh
Confidence 23345555 666665543 56689999984
No 228
>PRK10867 signal recognition particle protein; Provisional
Probab=97.24 E-value=0.0021 Score=56.72 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.++.++|++|+||||++..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998877665
No 229
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0025 Score=52.86 Aligned_cols=91 Identities=15% Similarity=0.044 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH---HhCCCCCcccccChhhhhHHH
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIK---FVMPSSRLSEIMEESSEMKKI 99 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~---~l~~~~~~~~~~~~~~~~~~~ 99 (243)
+..+++=|+|+.|+|||++|.+++- ..+..-..++|++....+++..+..-... .+....+. .......+. +
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~-~~e~q~~i~--~ 132 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPD-TGEQQLEIA--E 132 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCC-CHHHHHHHH--H
Confidence 4678999999999999999988877 45555558899999888887654333222 12211110 111122233 3
Q ss_pred HHHHHhCCCeEEEEEeCCC
Q 045180 100 ILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 100 ~l~~~l~~~~~LlvlDdv~ 118 (243)
.+......+--|+|+|.+.
T Consensus 133 ~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 133 KLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHhccCCCCEEEEecCc
Confidence 4443334345699999984
No 230
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.22 E-value=0.0021 Score=51.99 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 16 DLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 16 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
+.+..+-+...++.|.|.+|+||||+|.+++.. -.++. ..+++++... +..+++..+ ..++
T Consensus 15 ~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 15 KRLGGGIPAGSLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred hhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 334333234569999999999999998766552 22222 3456666333 455666555 3444
No 231
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.22 E-value=0.00024 Score=55.94 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|++|+||||+|+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 232
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.22 E-value=0.001 Score=56.95 Aligned_cols=30 Identities=10% Similarity=0.020 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
..++.++|||++|+|||.+|+.+++ +....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~--elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFK--KMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHH--HcCCC
Confidence 3678999999999999999999999 44444
No 233
>PRK08233 hypothetical protein; Provisional
Probab=97.22 E-value=0.00031 Score=54.39 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|.+|+||||||..++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999987
No 234
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.21 E-value=0.0015 Score=53.81 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
+...++.|.|.+|+|||++|.+++.. ....-..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecCC
Confidence 45689999999999999999887652 2222346778887643
No 235
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.20 E-value=0.0031 Score=48.51 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.+.|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988877
No 236
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.20 E-value=0.00024 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.239 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|.|.|.+|+||||+|+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999888
No 237
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.20 E-value=0.0023 Score=49.53 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC-ccc--cc---ccc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCC--cc--cccC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS-NYV--KY---YFD--CHAWVEESLLYDADQILYDIIKFVMPSSR--LS--EIME 91 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~-~~~--~~---~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~--~~~~ 91 (243)
...+++|.|+.|+|||||.+.+..+ ..+ .. .|. ...|+. + .+.+..++.... .. ...+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 4578999999999999999887532 111 11 110 122321 1 345566664321 10 1112
Q ss_pred hhhhhHHHHHHHHhCCC--eEEEEEeCCCCc---chhhHHHhhCCCC-CCCcEEEEeeCccccc
Q 045180 92 ESSEMKKIILHEYLMTK--RYLIVLDNVWRI---SVWDVIREILPDS-QNGSRVLITLSRIEIV 149 (243)
Q Consensus 92 ~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~---~~~~~l~~~l~~~-~~~~~iiiTtR~~~~~ 149 (243)
..+..+ -.+...+..+ +-++++|+.... ...+.+...+... ..|..||++|.+....
T Consensus 90 gGq~qr-l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 90 GGELQR-VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHH-HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 222111 3344444455 678888987433 2233333332221 1366788888876543
No 238
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.19 E-value=0.0031 Score=50.80 Aligned_cols=51 Identities=25% Similarity=0.119 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
.|-+.|..+=+....+.|.|.+|+|||+++.+++. .....-..++|++...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~--~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAY--KGLRDGDPVIYVTTEE 58 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHH--HHHhcCCeEEEEEccC
Confidence 33344444433568999999999999999988765 2222344678887644
No 239
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.19 E-value=0.0019 Score=58.09 Aligned_cols=100 Identities=13% Similarity=0.006 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-----
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRL----- 86 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----- 86 (243)
.+|-+.|..+=....++.|.|++|+|||+|+.+++. .....-..++++.... +..++..+. +.++.+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCC
Confidence 445555655545678999999999999999988877 3333344667776654 455555553 455543221
Q ss_pred --------ccccChhhhhHHHHHHHHhCC-CeEEEEEeCCC
Q 045180 87 --------SEIMEESSEMKKIILHEYLMT-KRYLIVLDNVW 118 (243)
Q Consensus 87 --------~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 118 (243)
+.....++.. ..+.+.+.. +.-.+|+|.+.
T Consensus 325 ~l~~~~~~p~~~~~~~~~--~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHL--QIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred cEEEEEcccccCChHHHH--HHHHHHHHHcCCCEEEEcCHH
Confidence 0112335566 777777754 45689999985
No 240
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.19 E-value=0.00067 Score=49.89 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 8 DNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 8 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++..++.+.|...-....++.+.|.-|+||||+++.+++.
T Consensus 5 ~~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34556666666543224468999999999999999999874
No 241
>PTZ00035 Rad51 protein; Provisional
Probab=97.18 E-value=0.0046 Score=52.93 Aligned_cols=100 Identities=10% Similarity=0.083 Sum_probs=57.0
Q ss_pred HHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccc----cccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc----
Q 045180 16 DLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVK----YYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---- 87 (243)
Q Consensus 16 ~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---- 87 (243)
+.|..+=....++.|+|.+|+|||+|+..++-..... ..-..++|++....++... +.++++.++......
T Consensus 109 ~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 109 KLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred HHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhce
Confidence 3343333457889999999999999998876532211 1123567998877666655 444555555432110
Q ss_pred ---cccChhhhhHHHH---HHHHhC-CCeEEEEEeCCC
Q 045180 88 ---EIMEESSEMKKII---LHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 88 ---~~~~~~~~~~~~~---l~~~l~-~~~~LlvlDdv~ 118 (243)
...+.++.. +. +...+. .+--|||+|.+.
T Consensus 188 ~~~~~~~~e~~~--~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 188 AYARAYNHEHQM--QLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred EEEccCCHHHHH--HHHHHHHHHhhccCccEEEEECcH
Confidence 112223333 32 233332 345699999984
No 242
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.18 E-value=0.00044 Score=65.48 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=41.2
Q ss_pred CCCcccchhhHHHHHHHHhcC----CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 1 NRDTVGLDNKMEELLDLLTEG----PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 1 ~~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
|.+.+|.++..+++.++|... .....++.++|++|+||||+|+.++. .....|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE
Confidence 456899999999999887641 22456799999999999999999987 444343
No 243
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.0031 Score=49.54 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
+.|.+.|.+|+||||+|+++++ ..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak--~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK--ELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH--HHHHh
Confidence 4678899999999999999987 44443
No 244
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.17 E-value=0.0036 Score=52.00 Aligned_cols=56 Identities=14% Similarity=0.016 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVM 81 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~ 81 (243)
+.+++.++|++|+||||++..++. .....-..+..++..... ...+-+...++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 468999999999999999988876 343333345556544311 12233344445544
No 245
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.16 E-value=0.0028 Score=52.50 Aligned_cols=130 Identities=13% Similarity=0.043 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC-CCCcc-c
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP-SSRLS-E 88 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~-~ 88 (243)
.+.++..|.... ..+-++|.|++|+|||||.+.++. .+... .+.+++.-..- ...+-..++...... +.... .
T Consensus 98 ~~~~l~~l~~~~-~~~~~~i~g~~g~GKttl~~~l~~--~~~~~-~G~i~~~g~~v-~~~d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNN-RVLNTLIISPPQCGKTTLLRDLAR--ILSTG-ISQLGLRGKKV-GIVDERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCC-CeeEEEEEcCCCCCHHHHHHHHhC--ccCCC-CceEEECCEEe-ecchhHHHHHHHhcccccccccc
Confidence 344445555432 346889999999999999999988 33322 23333321110 000111233322211 11100 0
Q ss_pred ccCh-hhhhHHHHHHHHhC-CCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcccc
Q 045180 89 IMEE-SSEMKKIILHEYLM-TKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEI 148 (243)
Q Consensus 89 ~~~~-~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 148 (243)
..+. +...+..-+...+. ..+-++++|.+...+.+..+...+. .|..+|+||-+..+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 0010 00000022333332 4678999999977776666666553 37789999987655
No 246
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.16 E-value=0.00065 Score=52.38 Aligned_cols=39 Identities=15% Similarity=-0.040 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEEEEeCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVK-YYFDCHAWVEESL 65 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~F~~~~wv~~~~ 65 (243)
...+.+.|++|+|||.+|+.+++ .+. ......+-++.+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 46788999999999999999888 444 4444555565544
No 247
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.16 E-value=0.0023 Score=49.20 Aligned_cols=118 Identities=12% Similarity=0.002 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccc-cccee--EEEEeCCCCCHHHHHHHHH---HHhCCCCC-cccc-----cCh
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKY-YFDCH--AWVEESLLYDADQILYDII---KFVMPSSR-LSEI-----MEE 92 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~F~~~--~wv~~~~~~~~~~~~~~i~---~~l~~~~~-~~~~-----~~~ 92 (243)
...|-|++..|.||||.|..++- +... .+... -|+.-.........+..+. ...+.... ...+ ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35788888899999999976655 3332 33221 2333332233333333320 00011000 0000 112
Q ss_pred hhhhHHHHHHHHhCCCe-EEEEEeCCCCc-----chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 93 SSEMKKIILHEYLMTKR-YLIVLDNVWRI-----SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 93 ~~~~~~~~l~~~l~~~~-~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
.+.. +..++.+...+ =|+|||.+-.. -..+++...+...+.+..||+|-|+.
T Consensus 83 ~~~~--~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAW--QHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHH--HHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2333 45555555444 49999998422 23345666666666688999999974
No 248
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.002 Score=59.05 Aligned_cols=75 Identities=20% Similarity=0.101 Sum_probs=45.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
....|.|.|+.|+|||+||+++++... ++..-.+..++.+.-.. .. +..|- ..+. ..+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~-~~-~e~iQ---------------k~l~--~vfse 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDG-SS-LEKIQ---------------KFLN--NVFSE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccc-hh-HHHHH---------------HHHH--HHHHH
Confidence 456789999999999999999998433 22332344454433210 00 11111 1122 45555
Q ss_pred HhCCCeEEEEEeCCC
Q 045180 104 YLMTKRYLIVLDNVW 118 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~ 118 (243)
.+.-.+.++||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 566778999999995
No 249
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00041 Score=52.23 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.--+.|+|++|+||||+++.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 34689999999999999999987
No 250
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.14 E-value=0.0015 Score=53.87 Aligned_cols=53 Identities=25% Similarity=0.184 Sum_probs=40.3
Q ss_pred cCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 045180 20 EGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 20 ~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 76 (243)
.+-+..+++.|.|.+|+|||+++.++.. +...+...++|++.... ..++....
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 3334678999999999999999999887 56666788999988764 34444444
No 251
>PRK04328 hypothetical protein; Provisional
Probab=97.14 E-value=0.0018 Score=53.12 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
|-+.|..+=+...++.|.|.+|+|||+|+.++.. +....-..++|++...+
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGVYVALEEH 62 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeCC
Confidence 3344444434568999999999999999988765 22223456788877653
No 252
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00046 Score=64.33 Aligned_cols=123 Identities=11% Similarity=0.131 Sum_probs=70.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc-cc-----eeEEEEeCCCCCHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FD-----CHAWVEESLLYDADQILYD 75 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~-----~~~wv~~~~~~~~~~~~~~ 75 (243)
...+||++++.++++.|.....+.. .++|.+|+|||+++.-++. ++.+. -+ ..++. .++..
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s-----LD~g~---- 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS-----LDLGS---- 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE-----ecHHH----
Confidence 3579999999999999998753333 3479999999998877766 44321 11 11111 12111
Q ss_pred HHHHhCCCCCcccccChhhhhHHHHHHHHhC-CCeEEEEEeCCCCc-----------chhhHHHhhCCCCCCCcEEEEee
Q 045180 76 IIKFVMPSSRLSEIMEESSEMKKIILHEYLM-TKRYLIVLDNVWRI-----------SVWDVIREILPDSQNGSRVLITL 143 (243)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~iiiTt 143 (243)
+...-. ...+.++.. +.+.+.++ ..+..|.+|.+... +.-+.+++.+..+. --.|=.||
T Consensus 237 LvAGak------yRGeFEeRl--k~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGe-L~~IGATT 307 (786)
T COG0542 237 LVAGAK------YRGEFEERL--KAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGE-LRCIGATT 307 (786)
T ss_pred Hhcccc------ccCcHHHHH--HHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCC-eEEEEecc
Confidence 111111 233445555 55555553 34899999998532 23345566665543 23466666
Q ss_pred Ccc
Q 045180 144 SRI 146 (243)
Q Consensus 144 R~~ 146 (243)
-++
T Consensus 308 ~~E 310 (786)
T COG0542 308 LDE 310 (786)
T ss_pred HHH
Confidence 554
No 253
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.14 E-value=0.0024 Score=54.90 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
...+.|.|+.|+||||+...+.+ .+..+....++. +.++... ..... ..+..... ...+..... +.++..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e--vg~~~~~~~--~~l~~~ 191 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE--VGLDTLSFA--NALRAA 191 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCc-cceEEccc--cCCCCcCHH--HHHHHh
Confidence 46899999999999999998877 444444444443 2222111 00000 00000000 111122345 778888
Q ss_pred hCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 105 LMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
++..+=.|++|.+.+.+.+....... ..|..++.|.-...
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 88889999999998777665433332 22444555554433
No 254
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.12 E-value=0.00043 Score=55.10 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+|+|.|.+|+|||||+..++.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999887
No 255
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.12 E-value=0.0004 Score=51.46 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 256
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.12 E-value=0.0014 Score=54.26 Aligned_cols=91 Identities=11% Similarity=-0.021 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
...+.|.|+.|+||||++..+.+ .+...-..++- +.++.... +..+ .++.. ......... +.++..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~--~i~~~~~~iit--iEdp~E~~--~~~~-~q~~v-----~~~~~~~~~--~~l~~~ 145 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALS--ELNTPEKNIIT--VEDPVEYQ--IPGI-NQVQV-----NEKAGLTFA--RGLRAI 145 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh--hhCCCCCeEEE--ECCCceec--CCCc-eEEEe-----CCcCCcCHH--HHHHHH
Confidence 46899999999999999988766 33221112222 22221100 0000 00000 000011244 777888
Q ss_pred hCCCeEEEEEeCCCCcchhhHHHhh
Q 045180 105 LMTKRYLIVLDNVWRISVWDVIREI 129 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~~~~~~l~~~ 129 (243)
++..+=.++++++.+.+....+...
T Consensus 146 lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 146 LRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred hccCCCEEEeccCCCHHHHHHHHHH
Confidence 8888889999999888765544333
No 257
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.11 E-value=0.0045 Score=46.23 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|..|+|||||++.+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 457899999999999999999887
No 258
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.10 E-value=0.0016 Score=56.80 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.0
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 2 RDTVGLDNKMEELLDLLTEG------------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
..++|.++.+..+..++... +..++.+.+.|++|+|||++|+.+.. .....|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk--~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHH--HhCChh
Confidence 56899999999998888541 11246789999999999999999987 444333
No 259
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.10 E-value=0.0022 Score=51.54 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 489999999999999998887
No 260
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0063 Score=57.77 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=66.7
Q ss_pred CCcccchhhHHHHHHHHhcCC----C--CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGP----P--QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYD 75 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~----~--~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 75 (243)
..++|.++.+..|.+.+.... + ......+.|+.|+|||.||+.++. -+-+..+..+-++.+ +...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechh------hhhh-
Confidence 357888999999998887641 1 466788999999999999999887 554444455555433 3222
Q ss_pred HHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeE-EEEEeCCCCc
Q 045180 76 IIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRY-LIVLDNVWRI 120 (243)
Q Consensus 76 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~ 120 (243)
+.+..+.+.. --..... ..+.+.++.++| +|.|||++..
T Consensus 633 vskligsp~g----yvG~e~g--g~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSPPG----YVGKEEG--GQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCCcc----cccchhH--HHHHHHHhcCCceEEEEechhhc
Confidence 3333343321 0112223 567777878766 5557999654
No 261
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.09 E-value=0.0017 Score=59.95 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=36.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKY 53 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~ 53 (243)
++++|.++....+...+... +.+.++|++|+|||++|+.+.+ .+..
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~--~l~~ 63 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAE--LLPD 63 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHH--HcCc
Confidence 45789888888887777765 3566999999999999999987 5543
No 262
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.09 E-value=0.00067 Score=51.29 Aligned_cols=36 Identities=14% Similarity=-0.153 Sum_probs=28.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVE 62 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~ 62 (243)
..+|-++|.+|+||||||+++.+ +..+.-..+..++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 46889999999999999999998 6666555666664
No 263
>PRK06762 hypothetical protein; Provisional
Probab=97.08 E-value=0.00046 Score=52.76 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+|.|.|++|+||||+|+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 264
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.08 E-value=0.0037 Score=56.74 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|....+.++.+.+..-.....-|.|+|..|+||+.+|+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 3689999888888877754222334588999999999999999765
No 265
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.01 Score=52.51 Aligned_cols=87 Identities=17% Similarity=0.106 Sum_probs=45.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
.++++++|++|+||||++..++...........+..++..... ...+-+....+.++.+.. ...+..++. ..+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~--~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELA--KALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHH--HHHHH
Confidence 4689999999999999888876622201222345556654321 112223333444444432 222333444 44443
Q ss_pred HhCCCeEEEEEeCC
Q 045180 104 YLMTKRYLIVLDNV 117 (243)
Q Consensus 104 ~l~~~~~LlvlDdv 117 (243)
+.+ .=++++|..
T Consensus 297 -~~~-~DlVlIDt~ 308 (424)
T PRK05703 297 -LRD-CDVILIDTA 308 (424)
T ss_pred -hCC-CCEEEEeCC
Confidence 222 346777765
No 266
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.08 E-value=0.00047 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|++|+|||||++.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999886
No 267
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.08 E-value=0.0039 Score=55.58 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=53.0
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cc
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EI 89 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~ 89 (243)
+|-+.|..+-....++.|.|.+|+|||||+.+++. .....-..++|++... +..++... +..++...... ..
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e 156 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSE 156 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCC
Confidence 34444443334568999999999999999998876 3332223577876544 33333322 33444322110 12
Q ss_pred cChhhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 90 MEESSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
.+.+++. ..+. ..+.-++|+|.+.
T Consensus 157 ~~~~~I~--~~i~---~~~~~~vVIDSIq 180 (454)
T TIGR00416 157 TNWEQIC--ANIE---EENPQACVIDSIQ 180 (454)
T ss_pred CCHHHHH--HHHH---hcCCcEEEEecch
Confidence 2333333 3332 2345689999884
No 268
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.08 E-value=0.0015 Score=60.86 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++-+.++|++|+|||++|+.++.
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999999987
No 269
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0037 Score=59.21 Aligned_cols=134 Identities=11% Similarity=0.172 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc
Q 045180 8 DNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS 87 (243)
Q Consensus 8 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 87 (243)
.+...+|.+.+... .++.|.|..|+||||-.-+++-+.-. ...+.+-+.-.......++...+++.++....+.
T Consensus 52 ~~~~~~i~~ai~~~----~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~ 125 (845)
T COG1643 52 TAVRDEILKAIEQN----QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGET 125 (845)
T ss_pred HHHHHHHHHHHHhC----CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCce
Confidence 35567777777765 69999999999999977554442111 2223444433334466788999999998864432
Q ss_pred -----------------cccChhhhhHHHHHH-HHhCCCeEEEEEeCCCCcch-----hhHHHhhCCCCCCCcEEEEeeC
Q 045180 88 -----------------EIMEESSEMKKIILH-EYLMTKRYLIVLDNVWRISV-----WDVIREILPDSQNGSRVLITLS 144 (243)
Q Consensus 88 -----------------~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~-----~~~l~~~l~~~~~~~~iiiTtR 144 (243)
.-++..-+. ..++ +.+-.+=-.+|+|.+.+..- +..+...++.....-||||+|=
T Consensus 126 VGY~iRfe~~~s~~Trik~mTdGiLl--rei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 126 VGYSIRFESKVSPRTRIKVMTDGILL--REIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred eeEEEEeeccCCCCceeEEeccHHHH--HHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 112233333 3333 11112334789999965432 1222333333333489999986
Q ss_pred ccccc
Q 045180 145 RIEIV 149 (243)
Q Consensus 145 ~~~~~ 149 (243)
.-+..
T Consensus 204 Tld~~ 208 (845)
T COG1643 204 TLDAE 208 (845)
T ss_pred ccCHH
Confidence 65443
No 270
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.07 E-value=0.0037 Score=57.05 Aligned_cols=131 Identities=18% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHH-HHHHHhcCcccccccceeEEEEeCCCC--CHHHHHHHHHHHhCCCCCcc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTA-FAVEAYSSNYVKYYFDCHAWVEESLLY--DADQILYDIIKFVMPSSRLS 87 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTt-La~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~ 87 (243)
.++|++.+... ++|.|+|..|+|||| |++.+|.+.-..+ + -+.+.++. ....+...+.+.++......
T Consensus 361 R~~ll~~ir~n----~vvvivgETGSGKTTQl~QyL~edGY~~~---G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 361 RDQLLSVIREN----QVVVIVGETGSGKTTQLAQYLYEDGYADN---G--MIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHhhC----cEEEEEecCCCCchhhhHHHHHhcccccC---C--eeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 44555555554 799999999999987 8888887421111 2 23444443 44567888888886654432
Q ss_pred -------cc-----cChhhhhHHHHHHHHhCC----CeEEEEEeCCCCcc-hh----hHHHhhCCCCCCCcEEEEeeCcc
Q 045180 88 -------EI-----MEESSEMKKIILHEYLMT----KRYLIVLDNVWRIS-VW----DVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 88 -------~~-----~~~~~~~~~~~l~~~l~~----~~~LlvlDdv~~~~-~~----~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
++ ....-+.+--.+++.|.+ +=..||+|.+.+.. .. ..++..+... ..-|+||||-.-
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larR-rdlKliVtSATm 510 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR-RDLKLIVTSATM 510 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhh-ccceEEEeeccc
Confidence 00 000111100245666655 34588899986442 12 2233333333 367999998765
Q ss_pred ccccc
Q 045180 147 EIVAS 151 (243)
Q Consensus 147 ~~~~~ 151 (243)
+....
T Consensus 511 ~a~kf 515 (1042)
T KOG0924|consen 511 DAQKF 515 (1042)
T ss_pred cHHHH
Confidence 44433
No 271
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0024 Score=55.13 Aligned_cols=97 Identities=19% Similarity=0.079 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---c
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---E 88 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 88 (243)
.++-+.|..+--...++.|-|.+|+|||||..+++. +....- .+++|+-.. +..++ +--+..++.+.... .
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEeh
Confidence 444445544323457899999999999999998888 554443 677776544 33332 23345566544321 2
Q ss_pred ccChhhhhHHHHHHHHhCCCeEEEEEeCCCC
Q 045180 89 IMEESSEMKKIILHEYLMTKRYLIVLDNVWR 119 (243)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 119 (243)
..+.+++. +.+. ..++-++|+|.+..
T Consensus 154 Et~~e~I~--~~l~---~~~p~lvVIDSIQT 179 (456)
T COG1066 154 ETNLEDII--AELE---QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCHHHHH--HHHH---hcCCCEEEEeccce
Confidence 23333333 3333 35778999999853
No 272
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.07 E-value=0.004 Score=48.59 Aligned_cols=118 Identities=14% Similarity=-0.033 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe---CCCCCHHHHHHHHH--HH--hCCCCC-c--cc---ccC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE---SLLYDADQILYDII--KF--VMPSSR-L--SE---IME 91 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~---~~~~~~~~~~~~i~--~~--l~~~~~-~--~~---~~~ 91 (243)
...|.|+|..|-||||.|..++- +...+--.+..+.+ .........+..+- .. .+.... . .. ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46888999999999999977655 33332222332322 21223333333210 00 011000 0 00 011
Q ss_pred hhhhhHHHHHHHHhCCC-eEEEEEeCCCCc-----chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 92 ESSEMKKIILHEYLMTK-RYLIVLDNVWRI-----SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 92 ~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
..+.. +..++.+... -=|+|||.+-.. -..+++...+...+.+..||+|=|+.
T Consensus 100 ~~~~~--~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGW--EEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHH--HHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 12233 4555555444 459999998432 23456666666666788999999974
No 273
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.05 E-value=0.0037 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|.|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 274
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0007 Score=55.97 Aligned_cols=66 Identities=20% Similarity=0.064 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 76 (243)
-.+|+..+.....+..+|+|+|.||+|||||...+.....-+.+=-.++=|+-+++++-..++..=
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 356666666665578899999999999999998887733333333356667777777655554433
No 275
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.04 E-value=0.0013 Score=48.58 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=42.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCC
Q 045180 28 VAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMT 107 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 107 (243)
|.++|++|+|||+||+.+++ .... ...-+.++...+..+++...--. ... .......+. ..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~----~~~-~~~~~~~l~--~a~~----- 64 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS----NGQ-FEFKDGPLV--RAMR----- 64 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET-----TTT-TCEEE-CCC--TTHH-----
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec----ccc-ccccccccc--cccc-----
Confidence 67899999999999999988 4422 23345666666666554322211 000 111111122 2222
Q ss_pred CeEEEEEeCCCC
Q 045180 108 KRYLIVLDNVWR 119 (243)
Q Consensus 108 ~~~LlvlDdv~~ 119 (243)
+..+++||++..
T Consensus 65 ~~~il~lDEin~ 76 (139)
T PF07728_consen 65 KGGILVLDEINR 76 (139)
T ss_dssp EEEEEEESSCGG
T ss_pred ceeEEEECCccc
Confidence 788999999963
No 276
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0043 Score=47.93 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...+.|.|++|+|||||++.+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468899999999999999999884
No 277
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.03 E-value=0.0018 Score=55.34 Aligned_cols=62 Identities=19% Similarity=0.114 Sum_probs=46.4
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQIL 73 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 73 (243)
.++|+++....+...+..+ +.+.+.|.+|+|||+||+.++. ..... .+.+.+.+.....++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~--~l~~~---~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALAR--ALGLP---FVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHH--HhCCC---eEEEecCCCCCHHHhc
Confidence 4789888888888888776 4688999999999999999988 44433 3455555555555543
No 278
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.03 E-value=0.0015 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.028 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++.|.|++|+||||+|+.++.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999887
No 279
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.027 Score=45.73 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe-CCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE-SLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
+.+++.++|.-|+|||.+.+.+... ..+ +.++-+.+ ....+...+...++..+..+....-....++.. ..+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~--~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQID--RELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHH--HHHH
Confidence 5679999999999999999954432 111 11222333 334567788899999888732210111122333 3343
Q ss_pred HHh-CCCe-EEEEEeCCCCc--chhhHHHhh
Q 045180 103 EYL-MTKR-YLIVLDNVWRI--SVWDVIREI 129 (243)
Q Consensus 103 ~~l-~~~~-~LlvlDdv~~~--~~~~~l~~~ 129 (243)
... ++++ ..+++|++.+. +..+.++..
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll 154 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLL 154 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHH
Confidence 333 4566 89999998654 444444433
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.03 E-value=0.0081 Score=52.85 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.+|.++|++|+||||++..++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 281
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.009 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++++++|+.|+||||.+.+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 57999999999999998888876
No 282
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0038 Score=51.09 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=70.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC-----CCCHHHHHHHHHHHhCCCCCcc----cccChhh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL-----LYDADQILYDIIKFVMPSSRLS----EIMEESS 94 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~ 94 (243)
...+++|+|.+|+||||+++.+.. -.. .-.+.+++.-.+ .....+-..+++...+.+...- ..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~--L~~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG--LEE-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc--CcC-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 457899999999999999999987 333 223444433221 1223455667777777443211 1122222
Q ss_pred hhHHHHHHHHhCCCeEEEEEeCCCCc---chhhHHHhhCCC--CCCCcEEEEeeCccccccccc
Q 045180 95 EMKKIILHEYLMTKRYLIVLDNVWRI---SVWDVIREILPD--SQNGSRVLITLSRIEIVASFQ 153 (243)
Q Consensus 95 ~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~l~~~l~~--~~~~~~iiiTtR~~~~~~~~~ 153 (243)
..+ -.+.+.+.-++-++|.|..-+. +.-.++...+.+ ...|...+..|-+-.+...++
T Consensus 115 rQR-i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQR-IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhh-HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 220 2456667788889999987433 111222222211 112556777777766665554
No 283
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.01 E-value=0.0018 Score=60.32 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|....+.++.+.+..-.....-|.|+|.+|+||+++|+.+.+
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~ 370 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHN 370 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHH
Confidence 578888888888777765432344588999999999999999877
No 284
>PRK05439 pantothenate kinase; Provisional
Probab=97.01 E-value=0.005 Score=51.95 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=22.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+.+|+|.|.+|+||||+|..+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988876
No 285
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.00 E-value=0.0017 Score=60.02 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=52.5
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVK-YYFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
+++|.++.++.|...+... +.+.++|++|+||||+|+.+.+ .+. .+++..+|..- ...+...+++.++..+|
T Consensus 32 ~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~--~l~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 32 QVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAE--LLPKEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHH--HcChHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 5789888888888777655 4688999999999999999887 443 24567777654 33456666666666554
No 286
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.0098 Score=51.43 Aligned_cols=89 Identities=9% Similarity=-0.021 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
+.++++++|+.|+||||++..++. .....-..+..++..... ...+-+....+.++.+.. ...+..++. ..+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~--~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~--~al~ 278 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELE--EAVQ 278 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHH--HHHH
Confidence 578999999999999999988876 332222345566654322 233445555555554432 222334444 4443
Q ss_pred HHhC-CCeEEEEEeCCC
Q 045180 103 EYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 103 ~~l~-~~~~LlvlDdv~ 118 (243)
..-. +..=++++|-.-
T Consensus 279 ~l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 279 YMTYVNCVDHILIDTVG 295 (407)
T ss_pred HHHhcCCCCEEEEECCC
Confidence 3321 233567777664
No 287
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.99 E-value=0.005 Score=52.09 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=55.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHH
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKI 99 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~ 99 (243)
+..+++-|+|+.|+||||||.++.. ..+..-..++|++....++. ..+..+|.+.... ...+.++.. +
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al--~ 121 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQAL--W 121 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHH--H
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHH--H
Confidence 3567999999999999999988887 55445557889988776554 3455666554322 223445555 6
Q ss_pred HHHHHhC-CCeEEEEEeCCCC
Q 045180 100 ILHEYLM-TKRYLIVLDNVWR 119 (243)
Q Consensus 100 ~l~~~l~-~~~~LlvlDdv~~ 119 (243)
.....++ +.--++|+|.|..
T Consensus 122 ~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CTT
T ss_pred HHHHHhhcccccEEEEecCcc
Confidence 6666554 4456899999853
No 288
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.99 E-value=0.0053 Score=50.80 Aligned_cols=96 Identities=21% Similarity=0.112 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
.+.+.++|++|+|||+-++.+++. .+..+.+..++.++...+...++....... .....+.. ..+..+
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~----~~~~~d~~--~~~~~~ 161 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGAT----DGTINDLT--ERLMIR 161 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhccc----chhHHHHH--HHHHHH
Confidence 458899999999999999988872 223444566777777777777777766553 23445566 777788
Q ss_pred hCCCeEEEEEeCCCCc--chhhHHHhhCCC
Q 045180 105 LMTKRYLIVLDNVWRI--SVWDVIREILPD 132 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~--~~~~~l~~~l~~ 132 (243)
+.+..-+++.|+.+.. ..++.++.....
T Consensus 162 l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 162 LRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 8888889999998765 456666655433
No 289
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0087 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++++|+.|+||||++..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 290
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.99 E-value=0.00055 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|.|.+|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999998887
No 291
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.99 E-value=0.012 Score=48.69 Aligned_cols=52 Identities=10% Similarity=-0.061 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccc-cceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
...++.|.|.+|+|||+++.+++. ..... -..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 456888999999999999988876 33222 34677887655 345555555444
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0039 Score=56.05 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|++|+||||++..++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988776
No 293
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0032 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999987
No 294
>PRK03839 putative kinase; Provisional
Probab=96.95 E-value=0.00063 Score=52.77 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+++.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 295
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.91 E-value=0.0011 Score=53.58 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+|+.+++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999877
No 296
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.91 E-value=0.0091 Score=53.45 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=35.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|+...+.++.+.+..-......|.|.|.+|+|||++|+.+++
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~ 183 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHh
Confidence 478888888887777654333456688999999999999999877
No 297
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0013 Score=51.01 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999883
No 298
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.89 E-value=0.00084 Score=51.42 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|.+.|++|+||||+|..+++
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 299
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.89 E-value=0.0023 Score=50.47 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..++.|.|++|+||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999887
No 300
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.88 E-value=0.0031 Score=48.14 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=57.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC--CCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL--LYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIIL 101 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 101 (243)
...+++|.|+.|+|||||.+.++.- . ....+.+++.-.. ..+..+.. .+.++.- ...+..+.. +-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~--~-~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~----~qLS~G~~q-rl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL--Y-KPDSGEILVDGKEVSFASPRDAR---RAGIAMV----YQLSVGERQ-MVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC--C-CCCCeEEEECCEECCcCCHHHHH---hcCeEEE----EecCHHHHH-HHHH
Confidence 3468999999999999999998872 2 2233444443211 11111111 0111110 001111111 1345
Q ss_pred HHHhCCCeEEEEEeCCCCc---chhhHHHhhCCCC-CCCcEEEEeeCccc
Q 045180 102 HEYLMTKRYLIVLDNVWRI---SVWDVIREILPDS-QNGSRVLITLSRIE 147 (243)
Q Consensus 102 ~~~l~~~~~LlvlDdv~~~---~~~~~l~~~l~~~-~~~~~iiiTtR~~~ 147 (243)
...+-..+-++++|+.... .....+...+... ..+..||++|.+..
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 5555567788999987543 2223333332211 23567888887754
No 301
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.88 E-value=0.0097 Score=53.17 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL-LYDADQILYDIIKFVMPS 83 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 83 (243)
..++++++|+.|+||||++.+++.....+.....+..+.... .....+-+....+.++.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 357999999999999999988886221222112344454332 122333344445554443
No 302
>PRK06217 hypothetical protein; Validated
Probab=96.87 E-value=0.0023 Score=49.80 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 303
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0039 Score=56.37 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
.+.-|.+||++|+|||-||+++++ +..-+| +++..+ +++ ...-+. ++.... ..+++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELl----NkYVGE-------SErAVR--~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELL----NKYVGE-------SERAVR--QVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHH----HHHhhh-------HHHHHH--HHHHH
Confidence 356788999999999999999999 566565 444332 122 221111 222233 44444
Q ss_pred HhCCCeEEEEEeCCCCc-------------chhhHHHhhCCC--CCCCcEEEEeeCccccccc
Q 045180 104 YLMTKRYLIVLDNVWRI-------------SVWDVIREILPD--SQNGSRVLITLSRIEIVAS 151 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~-------------~~~~~l~~~l~~--~~~~~~iiiTtR~~~~~~~ 151 (243)
.-..-+++|.+|.++.. ...+++...+.. ...|.-||-.|-.+++...
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDp 662 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDP 662 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccch
Confidence 44567999999998532 123445444432 2356677777766665443
No 304
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.024 Score=48.10 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=27.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+.+...+..+. -...+.++|+.|+||+++|..+++
T Consensus 12 ~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~ 48 (319)
T PRK08769 12 AYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAE 48 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHH
Confidence 3455555555542 356789999999999999988776
No 305
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.85 E-value=0.0051 Score=51.46 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+.+|+|.|++|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999987654
No 306
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.84 E-value=0.0026 Score=49.68 Aligned_cols=108 Identities=13% Similarity=0.013 Sum_probs=55.2
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccc
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEI 89 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 89 (243)
+..++++..... ...++|.|+.|+||||+++.+.. .+.... ..+-+ ........-..... ++.........
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~--~i~~~~-~~i~i--ed~~E~~~~~~~~~-~~~~~~~~~~~ 83 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA--FIPPDE-RIITI--EDTAELQLPHPNWV-RLVTRPGNVEG 83 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh--hcCCCC-CEEEE--CCccccCCCCCCEE-EEEEecCCCCC
Confidence 344444444443 36899999999999999998876 332221 22222 11100000000000 00000000001
Q ss_pred cChhhhhHHHHHHHHhCCCeEEEEEeCCCCcchhhHHHh
Q 045180 90 MEESSEMKKIILHEYLMTKRYLIVLDNVWRISVWDVIRE 128 (243)
Q Consensus 90 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~ 128 (243)
....... +.++..++..+=.++++.+.+.+.++.+..
T Consensus 84 ~~~~~~~--~~l~~~lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 84 SGEVTMA--DLLRSALRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred CCccCHH--HHHHHHhccCCCEEEEEccCcHHHHHHHHH
Confidence 1122344 667777777888999999988877665544
No 307
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.83 E-value=0.0011 Score=51.57 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999886
No 308
>PTZ00494 tuzin-like protein; Provisional
Probab=96.82 E-value=0.013 Score=51.58 Aligned_cols=106 Identities=12% Similarity=-0.047 Sum_probs=70.3
Q ss_pred CCcccchhhHHHHHHHHhcC-CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 045180 2 RDTVGLDNKMEELLDLLTEG-PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFV 80 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 80 (243)
..+|.|+.+-..+.+.|..- ...++++.+.|..|.||++|.+...+.+.. ..++|++.... +-++.+++.+
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrsVVKAL 442 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRSVVRAL 442 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHHHHHHh
Confidence 45889999988888888764 347899999999999999999887663222 56678876654 4688899999
Q ss_pred CCCCCcccccChhhhhHH-HHHHHHhCCCeEEEEEe
Q 045180 81 MPSSRLSEIMEESSEMKK-IILHEYLMTKRYLIVLD 115 (243)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlvlD 115 (243)
+.+..+.-..-.+-+..- ..-+....++..+||+-
T Consensus 443 gV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk 478 (664)
T PTZ00494 443 GVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR 478 (664)
T ss_pred CCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 988653211111222200 22223345666777763
No 309
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.82 E-value=0.0017 Score=53.78 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..|.|+|.+|+||||+|.++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999877
No 310
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0039 Score=55.91 Aligned_cols=137 Identities=12% Similarity=0.069 Sum_probs=74.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
+++||-+.....|...+..+. -...-...|+-|+||||+|+-++......+. ....++..-...+.|-..-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCc
Confidence 357999999999999998763 2345678899999999999988762211110 11112222222223322200
Q ss_pred CCCCcc---cccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCc-cccc
Q 045180 82 PSSRLS---EIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSR-IEIV 149 (243)
Q Consensus 82 ~~~~~~---~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~ 149 (243)
.+.-+. .....+++ +.+.+.. .++-=+.|+|.|.-. ..++.+...+-........|..|.+ ..+.
T Consensus 88 ~DviEiDaASn~gVddi---R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 88 IDVIEIDAASNTGVDDI---REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred ccchhhhhhhccChHHH---HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 000000 11122222 2333333 234447889999643 5677777777665555555555544 4443
No 311
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.81 E-value=0.0059 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999887
No 312
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.027 Score=47.94 Aligned_cols=126 Identities=6% Similarity=0.011 Sum_probs=64.3
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSR---- 85 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 85 (243)
..+.|.+.+..+. -.....++|+.|+||+++|..+++ .+-..-.. ...++..-...+.+...-.++..
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~--~llC~~~~-----~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQ--WLMCQTPQ-----GDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHH--HHcCCCCC-----CCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 3455666666542 356788999999999999988876 22110000 00011111111111111110000
Q ss_pred -cccccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 86 -LSEIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 86 -~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
.......+++. + +.+.+ .+++=++|+|+++.. +..+.+...+-..+.++.+|++|.+.
T Consensus 82 ~~~~~I~id~iR--~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 82 IDNKDIGVDQVR--E-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred ccCCCCCHHHHH--H-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 00112233332 2 22222 245557889999755 45677777777666677777777664
No 313
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0016 Score=58.75 Aligned_cols=71 Identities=13% Similarity=0.009 Sum_probs=45.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
..+.+.++|++|.|||.||+.+++ .....|-.+..- .+..... ..+...+. +.+..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~-------------~l~sk~v-------Gesek~ir--~~F~~ 330 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS-------------ELLSKWV-------GESEKNIR--ELFEK 330 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH-------------HHhcccc-------chHHHHHH--HHHHH
Confidence 456899999999999999999999 555555322211 1111111 11223334 45555
Q ss_pred HhCCCeEEEEEeCCC
Q 045180 104 YLMTKRYLIVLDNVW 118 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~ 118 (243)
..+..++.|.+|+++
T Consensus 331 A~~~~p~iiFiDEiD 345 (494)
T COG0464 331 ARKLAPSIIFIDEID 345 (494)
T ss_pred HHcCCCcEEEEEchh
Confidence 556788999999985
No 314
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.79 E-value=0.0019 Score=54.91 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=40.3
Q ss_pred CCcccchhhHHHHHHHHhcC----CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG----PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..|+|.++.++++++.+... +...+++.+.|+-|.|||||+..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999988753 45789999999999999999998876
No 315
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.79 E-value=0.00067 Score=49.32 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccce
Q 045180 28 VAILDSIGLDKTAFAVEAYSSNYVKYYFDC 57 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~~~~~~~~F~~ 57 (243)
|.|+|.+|+|||++|+.+++ .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 78999999999999999998 66667743
No 316
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.79 E-value=0.0012 Score=51.08 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999877
No 317
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.78 E-value=0.0011 Score=51.57 Aligned_cols=21 Identities=38% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|.+|+||||||..+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 318
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.77 E-value=0.014 Score=46.64 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++.|+|+.|+||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38899999999999999988763
No 319
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.77 E-value=0.029 Score=48.67 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=35.5
Q ss_pred ceEEEEEcCCCCcHHH-HHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCCCC
Q 045180 25 LSVVAILDSIGLDKTA-FAVEAYSSNYVKYYFDCHAWVEESLL-YDADQILYDIIKFVMPSSR 85 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTt-La~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~ 85 (243)
.++++++|+.|+|||| ||+..++......+ ..+..++...- -...+=++..++-++.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 7899999999999986 77665552211222 24555554332 2334445555666666544
No 320
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.77 E-value=0.0065 Score=53.48 Aligned_cols=89 Identities=9% Similarity=0.021 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----cccC-hh----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIME-ES---- 93 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~-~~---- 93 (243)
....++|.|.+|+|||||+..+++ ... .+.++..-++... ...++...++..-+.....- .+.+ ..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~--~~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTR--GTT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhcc--CCC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346799999999999999998887 222 2455556565544 33445555433321111100 1111 11
Q ss_pred -hhhHHHHHHHHh--CCCeEEEEEeCCC
Q 045180 94 -SEMKKIILHEYL--MTKRYLIVLDNVW 118 (243)
Q Consensus 94 -~~~~~~~l~~~l--~~~~~LlvlDdv~ 118 (243)
... -.+.+++ .++++|+++||+-
T Consensus 237 ~~~A--~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETA--TTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHH--HHHHHHHHHcCCCEEEEEcChH
Confidence 111 2233333 5789999999994
No 321
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.00072 Score=56.13 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++.+... .+-+.++|++|+|||++++...+
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhc
Confidence 4455566554 36778999999999999988776
No 322
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.77 E-value=0.0019 Score=56.67 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCcccchhhHHHHHHHHhcC--------------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG--------------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~--------------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.+..++.+...+... ......+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45789999888886655221 01235689999999999999999987
No 323
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.77 E-value=0.0011 Score=51.23 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.|++|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 324
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.76 E-value=0.0028 Score=49.21 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 045180 28 VAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYD 75 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 75 (243)
+.|.|++|+|||+|+.+++.. ....-..++|++... +..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence 678999999999999887662 222334677887654 44444443
No 325
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.76 E-value=0.0019 Score=50.27 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=28.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVE 62 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~ 62 (243)
.+.+.|+|++|+|||||+.++.. .....|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 47899999999999999999988 6666775555444
No 326
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.76 E-value=0.0053 Score=54.18 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----cccccCh-----hhh
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSR----LSEIMEE-----SSE 95 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~-----~~~ 95 (243)
...++|.|.+|+|||||+..+... . ....++++..-....++.++....+.......- ..+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l--~-~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA--D-AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC--C-CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 467999999999999999888762 2 122245554433344555554444433211000 0011111 111
Q ss_pred hHHHHHHHHh--CCCeEEEEEeCCC
Q 045180 96 MKKIILHEYL--MTKRYLIVLDNVW 118 (243)
Q Consensus 96 ~~~~~l~~~l--~~~~~LlvlDdv~ 118 (243)
. -.+.+++ .++++|+++||+.
T Consensus 242 a--~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 242 A--TAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred H--HHHHHHHHHcCCCEEEeccchH
Confidence 1 2233333 4789999999984
No 327
>PRK04040 adenylate kinase; Provisional
Probab=96.76 E-value=0.0012 Score=51.78 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=31.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
..+|+|+|++|+||||+++.+.+ +....+. ++ +..+++..++...+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~--~l~~~~~---~~------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE--KLKEDYK---IV------NFGDVMLEVAKEEGL 48 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH--HhccCCe---EE------ecchHHHHHHHHcCC
Confidence 46899999999999999999888 4421222 22 224455666666554
No 328
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.76 E-value=0.0009 Score=52.73 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 329
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.74 E-value=0.00065 Score=48.07 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|-|+|++|+|||++|..++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999887
No 330
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.73 E-value=0.0016 Score=51.80 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 21 GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 21 ~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.....+.+.|.|++|+|||||+..+..
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 334678899999999999999999875
No 331
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.73 E-value=0.0018 Score=58.91 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=36.4
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998887655 345678999999999999999875
No 332
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.72 E-value=0.027 Score=47.48 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=51.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccc-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc--cccChhhhhHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFD-CHAWVEESLLYDADQILYDIIKFVMPSSRLS--EIMEESSEMKKIILH 102 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~l~ 102 (243)
+.+.|.|+.|+||||++..+.+ .+....+ ..+ +.+.... ++. +..+.... ......... +.++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~--~i~~~~~~~ri-~tiEd~~---El~------~~~~~~v~~~~~~~~~~~~--~~l~ 198 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLA--EIAKNDPTDRV-VIIEDTR---ELQ------CAAPNVVQLRTSDDAISMT--RLLK 198 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HhhccCCCceE-EEECCch---hhc------CCCCCEEEEEecCCCCCHH--HHHH
Confidence 5678999999999999999887 4433211 122 2232211 110 00000000 011112455 7888
Q ss_pred HHhCCCeEEEEEeCCCCcchhhHHH
Q 045180 103 EYLMTKRYLIVLDNVWRISVWDVIR 127 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~~~~~~l~ 127 (243)
..|+..+=.|++..+.+.+.++.+.
T Consensus 199 ~aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 199 ATLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HHhcCCCCEEEEeccCCHHHHHHHH
Confidence 8888888889999998887665543
No 333
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.70 E-value=0.001 Score=51.57 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|.|.|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 334
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.69 E-value=0.0033 Score=50.28 Aligned_cols=50 Identities=18% Similarity=0.054 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCccc-------ccccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYV-------KYYFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~-------~~~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
+..|+|++|.|||+++..+.. .+ ...-+..+-+....+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~--~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA--QLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH--HH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHH--HhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987766655 23 123334444444444455555555555
No 335
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.69 E-value=0.0011 Score=51.88 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999887
No 336
>PRK00625 shikimate kinase; Provisional
Probab=96.69 E-value=0.0013 Score=50.86 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.++|++|+||||+++.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 337
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.69 E-value=0.0024 Score=52.89 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=60.1
Q ss_pred cccchhhHHHHHHHHhc----C-CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 4 TVGLDNKMEELLDLLTE----G-PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~----~-~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
++|..-..+.++..+.+ + ..++-+++.+|.+|+||.-+++.++++..... -.......+..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G--------------l~S~~V~~fva 149 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG--------------LRSPFVHHFVA 149 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc--------------ccchhHHHhhh
Confidence 45555555555555543 2 35688999999999999999988876311100 00111222222
Q ss_pred HhCCCCCcccccChhhhhHHHHHHHHhCC-CeEEEEEeCCCCc--chhhHHHhhCC
Q 045180 79 FVMPSSRLSEIMEESSEMKKIILHEYLMT-KRYLIVLDNVWRI--SVWDVIREILP 131 (243)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~--~~~~~l~~~l~ 131 (243)
.+.-+....-..-.+++. .+++..++. ++.|+|+|+++.. .-++.+.+.+.
T Consensus 150 t~hFP~~~~ie~Yk~eL~--~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 150 TLHFPHASKIEDYKEELK--NRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hccCCChHHHHHHHHHHH--HHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 222221110111123333 444444433 6899999999765 34566665554
No 338
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.67 E-value=0.034 Score=48.50 Aligned_cols=73 Identities=22% Similarity=0.083 Sum_probs=44.5
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC-CCCCHHHHHHHHHHHhCC
Q 045180 11 MEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEES-LLYDADQILYDIIKFVMP 82 (243)
Q Consensus 11 ~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~ 82 (243)
.++|.+.|... ...+.+|..+|.-|+||||.|-.+++ .++.+-..+.-|.+. ..+...+-++.+..+.+.
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~--~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v 156 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAK--YLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV 156 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHH--HHHHcCCceEEEecccCChHHHHHHHHHHHHcCC
Confidence 35666777642 13578999999999999999988877 443311122223221 123344556677777766
Q ss_pred CCC
Q 045180 83 SSR 85 (243)
Q Consensus 83 ~~~ 85 (243)
+..
T Consensus 157 ~~f 159 (451)
T COG0541 157 PFF 159 (451)
T ss_pred cee
Confidence 543
No 339
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.67 E-value=0.0056 Score=52.19 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++.+.+.....+..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3456666654344678999999999999999998776
No 340
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.67 E-value=0.0083 Score=54.44 Aligned_cols=45 Identities=24% Similarity=0.215 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|....+.++.+.+..-.....-|.|.|.+|+||+.+|+.+++
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~ 257 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQ 257 (526)
T ss_pred heeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHH
Confidence 489999999988888765333456799999999999999999886
No 341
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.66 E-value=0.012 Score=58.25 Aligned_cols=71 Identities=15% Similarity=0.044 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 045180 8 DNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSS 84 (243)
Q Consensus 8 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 84 (243)
....++|.+.|..+ +++.|+|..|+||||..-.++.+ ......+.+.+.-.......++...++..++.+.
T Consensus 69 ~~~~~~Il~~l~~~----~vvii~g~TGSGKTTqlPq~lle--~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 69 SAKREDIAEAIAEN----QVVIIAGETGSGKTTQLPKICLE--LGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred HHHHHHHHHHHHhC----ceEEEeCCCCCCcHHHHHHHHHH--cCCCCCceEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 34456677777654 58999999999999977555442 1111223333322223345677888888887653
No 342
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.66 E-value=0.0028 Score=57.95 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+.|.+..+.|.+.......+..+|.++|++|+||||+|+.++.
T Consensus 370 ~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~ 414 (568)
T PRK05537 370 EWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMV 414 (568)
T ss_pred hhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHH
Confidence 456677777766666655555677899999999999999999988
No 343
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.65 E-value=0.0016 Score=50.31 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.|++|+|||||++.+++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999988
No 344
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0066 Score=49.49 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=67.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCc-----ccc------ccc---ceeEEEEeCC------CCCH---------------
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSN-----YVK------YYF---DCHAWVEESL------LYDA--------------- 69 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~-----~~~------~~F---~~~~wv~~~~------~~~~--------------- 69 (243)
...++|.|+.|+|||||.+.+..-. ++. ..+ ..+.||+-.. +.++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 4799999999999999999987611 111 001 1244443211 1111
Q ss_pred -------HHHHHHHHHHhCCCCCcc---cccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc------chhhHHHhhCCCC
Q 045180 70 -------DQILYDIIKFVMPSSRLS---EIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI------SVWDVIREILPDS 133 (243)
Q Consensus 70 -------~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------~~~~~l~~~l~~~ 133 (243)
.+...+.++..+...... ...+-.+.. .-.+.+.|..++=|++||.--.. ..+-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~Q-RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQ-RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHH-HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 234444555554432211 122222222 03566677888899999975322 2233344444333
Q ss_pred CCCcEEEEeeCccccccc
Q 045180 134 QNGSRVLITLSRIEIVAS 151 (243)
Q Consensus 134 ~~~~~iiiTtR~~~~~~~ 151 (243)
|+.||+.|-+-.....
T Consensus 189 --g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 --GKTVLMVTHDLGLVMA 204 (254)
T ss_pred --CCEEEEEeCCcHHhHh
Confidence 7889999988655433
No 345
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.64 E-value=0.0039 Score=47.41 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 9 NKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 9 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+.+++|.+.|.. +++++.|.+|+|||||...+..+
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 456677776654 58999999999999999999884
No 346
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.64 E-value=0.011 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 347
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.63 E-value=0.0013 Score=49.21 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.+.|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 367899999999999999887
No 348
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0056 Score=46.45 Aligned_cols=48 Identities=21% Similarity=0.108 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccc-ccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYV-KYYFDCHAWVEESLLYDADQILYDIIKFVMPSSR 85 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 85 (243)
.++++|+|.+|+||||+...+.+ .. ..+ . -+..++.-+++...+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~--~l~~~~---i--------vNyG~~Mle~A~k~glve~ 52 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK--ELVKHK---I--------VNYGDLMLEIAKKKGLVEH 52 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH--HHhhce---e--------eeHhHHHHHHHHHhCCccc
Confidence 68999999999999999987766 33 111 1 1556778888888777654
No 349
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.013 Score=47.88 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=34.6
Q ss_pred cchhhHHHHHHHHhcC----C-------CCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 6 GLDNKMEELLDLLTEG----P-------PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~----~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
|=.+++++|.+....+ + +.++-|.++|++|.|||-+|+.+++ +....|
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 4456666666554322 1 4677899999999999999999999 665544
No 350
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.63 E-value=0.0023 Score=50.00 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+++.|+|++|+|||||++++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 468899999999999999999987
No 351
>PRK13947 shikimate kinase; Provisional
Probab=96.62 E-value=0.0015 Score=50.13 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 352
>PRK05973 replicative DNA helicase; Provisional
Probab=96.62 E-value=0.0076 Score=48.89 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=33.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 76 (243)
....+.|.|.+|+|||+++.+++.. ....-..+++++... +..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeC--CHHHHHHHH
Confidence 4578999999999999999887763 322234566666554 345555554
No 353
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.62 E-value=0.0066 Score=51.38 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEY 104 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 104 (243)
...++|.|..|+||||+++.+.. .+.... .++.+.-........ ..... +...... .....-... +.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~--~~~~~~-~iv~ied~~El~~~~--~~~~~-l~~~~~~-~~~~~~~~~--~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD--EIPKDE-RIITIEDTREIFLPH--PNYVH-LFYSKGG-QGLAKVTPK--DLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc--cCCccc-cEEEEcCccccCCCC--CCEEE-EEecCCC-CCcCccCHH--HHHHHH
Confidence 46899999999999999998887 332221 222221111111000 00000 0000000 011112234 666777
Q ss_pred hCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 105 LMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 105 l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
++..+=.+++|.+...+.++.+.. +..+. .-++.|+-..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a-~~~g~--~~~i~T~Ha~ 253 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRA-VNTGH--PGSITTLHAG 253 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHH-HhcCC--CeEEEEEeCC
Confidence 888888899999988666654433 32222 1246665443
No 354
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.62 E-value=0.0028 Score=57.55 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=26.4
Q ss_pred HHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 15 LDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 15 ~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.+....+++.+|+|.|++|+||||||+.+..
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 334444444678999999999999999999887
No 355
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.62 E-value=0.01 Score=49.05 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccc--ccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc-----cccCh---
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYV--KYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS-----EIMEE--- 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~--- 92 (243)
+-+.++|.|.+|+|||+|+..+.+...+ +.+-+.++++-+.+.. ...+++..+...-......- +....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999888874321 1224577788877754 34555555544321111100 11111
Q ss_pred --hhhhHHHHHHHHh---CCCeEEEEEeCCCC
Q 045180 93 --SSEMKKIILHEYL---MTKRYLIVLDNVWR 119 (243)
Q Consensus 93 --~~~~~~~~l~~~l---~~~~~LlvlDdv~~ 119 (243)
.... -.+.+++ .++++|+++||+..
T Consensus 148 ~a~~~a--~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMA--LTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHH--HHHHHHHHhccCCeEEEEEcChhH
Confidence 1111 2344444 36899999999944
No 356
>PHA02244 ATPase-like protein
Probab=96.62 E-value=0.002 Score=55.39 Aligned_cols=46 Identities=9% Similarity=-0.043 Sum_probs=29.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|....+......+..--....-|.|+|++|+|||+||+.+++
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH
Confidence 3466655555443333322101123578899999999999999988
No 357
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.61 E-value=0.0018 Score=48.04 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
++|.|++|+|||||++.+.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999988
No 358
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.022 Score=48.79 Aligned_cols=163 Identities=9% Similarity=-0.014 Sum_probs=81.1
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccc--ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC--
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKY--YFDCHAWVEESLLYDADQILYDIIKFVMPSSR-- 85 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-- 85 (243)
.-+++.+.+..+. -.....++|+.|+||+++|..+++ .+-. ..+. .+++.-...+.+...-.++..
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~--~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSR--WLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred HHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHH--HHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEE
Confidence 4456666666543 456788999999999999988765 2211 0000 001101111111110000000
Q ss_pred --cc--cccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc-ccccccc
Q 045180 86 --LS--EIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI-EIVASFQ 153 (243)
Q Consensus 86 --~~--~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~ 153 (243)
+. .....+++. + +.+.+ .+++=++|+|+++.. +..+.+...+-..+.++.+|++|.+. .+...+.
T Consensus 80 ~p~~~~~~I~idqiR--~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 TPEKGKSSLGVDAVR--E-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ecccccccCCHHHHH--H-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 00 112333333 2 22222 245568889998754 45677777776666677777776653 3433322
Q ss_pred -------ccCCC---------CCChhhhhhhhHHHHhcCCchh-HHHHH
Q 045180 154 -------FENGE---------NIGLDFLSTGGPLRVTYQGWPF-HILYH 185 (243)
Q Consensus 154 -------f~~~~---------~~~~~~~~~~~~i~~~c~glPl-ai~~~ 185 (243)
|.... .......+.+..++..++|.|. |+..+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~~~~~~a~~~~~la~G~~~~Al~l~ 205 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVTMSQDALLAALRLSAGAPGAALALL 205 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 32200 0001112235577889999885 44444
No 359
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.60 E-value=0.01 Score=51.82 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHH-HHHhcC
Q 045180 7 LDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFA-VEAYSS 48 (243)
Q Consensus 7 R~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa-~~~~~~ 48 (243)
|.+.+++|..||.+.. -..|.|.||-|+||+.|+ .++.++
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~ 41 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKD 41 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhC
Confidence 6788999999999873 468999999999999999 776663
No 360
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.60 E-value=0.01 Score=50.34 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=34.5
Q ss_pred chhhHHHHHHHHhcCC-CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 7 LDNKMEELLDLLTEGP-PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 7 R~~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
|+...+.|.+.+...+ +.+.+|+|.|.=|+|||++...+.+
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~ 42 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKE 42 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556778888888763 5789999999999999999999887
No 361
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.60 E-value=0.0034 Score=53.11 Aligned_cols=58 Identities=7% Similarity=-0.055 Sum_probs=39.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDA 69 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~ 69 (243)
.++=..+....+...+..+ +.|.|.|++|+|||++|..++. +....| +-+......+.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~--~l~~~~---~rV~~~~~l~~ 103 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAA--RLNWPC---VRVNLDSHVSR 103 (327)
T ss_pred CccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHH--HHCCCe---EEEEecCCCCh
Confidence 3444555666677777654 4699999999999999999988 554333 24444444443
No 362
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.59 E-value=0.0061 Score=48.74 Aligned_cols=85 Identities=11% Similarity=0.077 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----cccCh--------
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIMEE-------- 92 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~-------- 92 (243)
+.++|.|.+|+|||+|+.++.+. .. -+.++++.++... ...++..++...-..+.... .+.+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~--~~--~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANN--QD--ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--CT--TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhc--cc--ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 56889999999999999999883 32 2344777776543 34455555533211100000 11110
Q ss_pred --hhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 93 --SSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 93 --~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
-... +.+++ .++++|+++||+.
T Consensus 92 ~a~t~A--Eyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIA--EYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHH--HHHHH--TTSEEEEEEETHH
T ss_pred cchhhh--HHHhh--cCCceeehhhhhH
Confidence 1122 34444 6899999999983
No 363
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.59 E-value=0.011 Score=53.50 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-----
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRL----- 86 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----- 86 (243)
..|-+.|..+-....++.|.|.+|+|||+++.+++. .....-..++|++...+ ..++.... ..++.+...
T Consensus 260 ~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~--~~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g 334 (509)
T PRK09302 260 PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAE--AACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKG 334 (509)
T ss_pred HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcC
Confidence 344444543333567899999999999999988876 33334457888877653 44444433 344432110
Q ss_pred --------ccccChhhhhHHHHHHHHhCC-CeEEEEEeCCC
Q 045180 87 --------SEIMEESSEMKKIILHEYLMT-KRYLIVLDNVW 118 (243)
Q Consensus 87 --------~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 118 (243)
+.....+... ..+.+.+.. +.-++|+|.+.
T Consensus 335 ~l~i~~~~~~~~~~~~~~--~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 335 LLKIICARPESYGLEDHL--IIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CceeecCCcccCCHHHHH--HHHHHHHHHcCCCEEEEcCHH
Confidence 0112234455 566665543 44589999984
No 364
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.0038 Score=47.82 Aligned_cols=30 Identities=13% Similarity=-0.094 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
+..+|=++|.+|+||||+|..+.. ++....
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~--~L~~~G 51 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE--KLFAKG 51 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH--HHHHcC
Confidence 467888999999999999999988 554443
No 365
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.58 E-value=0.0016 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++.++.++||+|+||||+.++++.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHH
Confidence 45778899999999999999999884
No 366
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.58 E-value=0.0085 Score=51.32 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=34.2
Q ss_pred CcccchhhHHH---HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 3 DTVGLDNKMEE---LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 3 ~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
-+||..+..+. +.+++....-..+.+.+.|++|.|||+||..+++ .+....
T Consensus 25 GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~ 78 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAK--ELGEDV 78 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS
T ss_pred cccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHH--HhCCCC
Confidence 47887766654 3555555533458899999999999999999998 565443
No 367
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.58 E-value=0.0049 Score=48.70 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHh
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAY 46 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~ 46 (243)
++++|.+..+..|.-..... .-+.+.|++|+|||++|+.+.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~ 43 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLP 43 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHH
Confidence 46788888887776666653 578999999999999999875
No 368
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.57 E-value=0.026 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.+..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999875
No 369
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.0021 Score=50.82 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..+++|+|++|+|||||+..++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 370
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.55 E-value=0.0041 Score=52.69 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=31.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQIL 73 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 73 (243)
.+++.+.|.||+||||+|...+- ........++-++..+..++.+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhh
Confidence 47899999999999999977544 333333446666655555544443
No 371
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.54 E-value=0.013 Score=45.11 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=31.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 28 VAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
+.|.|.+|+|||++|.++... ....++++.-....+. ++...|.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHH
Confidence 678999999999999988762 2235667766666654 34444444
No 372
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.54 E-value=0.0043 Score=45.00 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=32.7
Q ss_pred CcccchhhHHHHHHHHh----cC-CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLT----EG-PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~----~~-~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|..-..+.+.+.+. .. .+++-|+..+|.+|+|||.+++.+++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~ 75 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAE 75 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHH
Confidence 46676655555555554 32 34678889999999999998877766
No 373
>PRK08149 ATP synthase SpaL; Validated
Probab=96.54 E-value=0.0098 Score=52.33 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=48.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCcc----ccc-Ch-----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL-LYDADQILYDIIKFVMPSSRLS----EIM-EE----- 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~-~~----- 92 (243)
....++|.|.+|+|||||...+++... -+.++...+.. ..++.++..+............ .+. ..
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346789999999999999998887321 22222233322 2345556555555322111100 111 11
Q ss_pred hhhhHHHHHHHHh--CCCeEEEEEeCCC
Q 045180 93 SSEMKKIILHEYL--MTKRYLIVLDNVW 118 (243)
Q Consensus 93 ~~~~~~~~l~~~l--~~~~~LlvlDdv~ 118 (243)
.... ..+.+++ .++++||++||+-
T Consensus 226 ~~~a--~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVA--TTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHH--HHHHHHHHHcCCCEEEEccchH
Confidence 1111 2233333 4889999999994
No 374
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.53 E-value=0.0043 Score=54.42 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCcccchhhHHHHHHHHhc----------CC------CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE----------GP------PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~----------~~------~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.++.++.+...+.. .. -....+.+.|++|+|||++|+.++.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 4578999988888766521 10 0135799999999999999999987
No 375
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.065 Score=45.51 Aligned_cols=164 Identities=9% Similarity=-0.032 Sum_probs=79.7
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC----
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSR---- 85 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---- 85 (243)
..+.+.+.+..+. -.....++|+.|+||+++|..+++. +-..-.. ..++..-...+.+...-.++..
T Consensus 11 ~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~--llC~~~~------~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 11 VWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRA--LLCQNYQ------SEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHH--HcCCCCC------CCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 3455565555542 4568899999999999999887652 1110000 0000101111111111100000
Q ss_pred --cccccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc-ccccccc--
Q 045180 86 --LSEIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI-EIVASFQ-- 153 (243)
Q Consensus 86 --~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~-~~~~~~~-- 153 (243)
.......+++. + +.+.+ .+..=++|+|+++.. +..+.+...+-..+.++.+|++|.+. .+...+.
T Consensus 82 ~~~~~~I~vdqiR--~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 82 EKEGKSITVEQIR--Q-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred CcCCCcCCHHHHH--H-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 00112333333 2 22222 233457888998754 45677777776666677777766654 3433332
Q ss_pred -----ccCCCC--CChhh----hhhhhHHHHhcCCchhHHHHH
Q 045180 154 -----FENGEN--IGLDF----LSTGGPLRVTYQGWPFHILYH 185 (243)
Q Consensus 154 -----f~~~~~--~~~~~----~~~~~~i~~~c~glPlai~~~ 185 (243)
|..... ...-+ ...+..+++.++|.|+.....
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQGITVPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcCCchHHHHHHHcCCCHHHHHHH
Confidence 322000 00000 012346778899999876655
No 376
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.53 E-value=0.0063 Score=50.69 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
+..++.|.|.+|+|||||...+.+ ......
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~--~l~~~~ 132 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLM--RLKDSV 132 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HhccCC
Confidence 689999999999999999999888 444433
No 377
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.53 E-value=0.019 Score=53.03 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++..|.|.+|.||||++..+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~ 189 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA 189 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999988766
No 378
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.53 E-value=0.003 Score=53.95 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.++.+..+.-.+... +..-+.+.|.+|+|||++|+.+.+
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 5789999888877655433 234588999999999999998865
No 379
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.52 E-value=0.015 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...+++|.|..|+|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988874
No 380
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.52 E-value=0.0068 Score=53.81 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----cccCh------
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIMEE------ 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~------ 92 (243)
+-+.++|.|.+|+|||+|+.++++... +++-+.++++-++... ...+++..+...-......- .+.+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 346799999999999999988887322 2245667777666543 34555555544322111100 11111
Q ss_pred hhhhHHHHHHHHh---CCCeEEEEEeCCC
Q 045180 93 SSEMKKIILHEYL---MTKRYLIVLDNVW 118 (243)
Q Consensus 93 ~~~~~~~~l~~~l---~~~~~LlvlDdv~ 118 (243)
.... -.+.+++ .++++|+++|++-
T Consensus 221 ~~~a--~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTG--LTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHH--HHHHHHHHHhcCCceEEEeccch
Confidence 1122 3344444 3789999999993
No 381
>PRK04182 cytidylate kinase; Provisional
Probab=96.52 E-value=0.0049 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|.|.|++|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0055 Score=46.32 Aligned_cols=113 Identities=15% Similarity=0.166 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccCh-hhhhHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEE-SSEMKKIILHE 103 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~l~~ 103 (243)
..+++|.|..|+|||||.+.+... +. ...+.+++.-...... ........++.-. . .+. +... -.+..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~--~~-~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~---q-lS~G~~~r--~~l~~ 93 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGL--LK-PTSGEILIDGKDIAKL--PLEELRRRIGYVP---Q-LSGGQRQR--VALAR 93 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--CC-CCccEEEECCEEcccC--CHHHHHhceEEEe---e-CCHHHHHH--HHHHH
Confidence 468999999999999999999873 22 2334444432111110 0001111111100 0 111 1122 34555
Q ss_pred HhCCCeEEEEEeCCCCc---chhhHHHhhCCCC-CCCcEEEEeeCcccc
Q 045180 104 YLMTKRYLIVLDNVWRI---SVWDVIREILPDS-QNGSRVLITLSRIEI 148 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~---~~~~~l~~~l~~~-~~~~~iiiTtR~~~~ 148 (243)
.+...+-++++|+.... .....+...+... ..+..++++|.+...
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 55666789999998533 2223333322211 124568888876543
No 383
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.51 E-value=0.0031 Score=53.23 Aligned_cols=46 Identities=13% Similarity=-0.003 Sum_probs=28.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQIL 73 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 73 (243)
+++.+.|-||+||||+|...+- ...+.-..++-++.....++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~--~~A~~G~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL--ALARRGKRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHTTS-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH--HHhhCCCCeeEeecCCCccHHHHh
Confidence 6789999999999999976654 222222345555555544444433
No 384
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.51 E-value=0.0044 Score=52.24 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++.+........+++|.|++|+|||||+..+..
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4455555544445689999999999999999988776
No 385
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.51 E-value=0.0041 Score=53.17 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=35.4
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+||.++.+..|.-.+.++ +..-|.|.|.+|+|||||++.+..
T Consensus 5 ~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 5789999998887777765 345688999999999999999865
No 386
>PHA02774 E1; Provisional
Probab=96.50 E-value=0.021 Score=51.90 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
..|..+|. +.++...+.|+|++|+|||.+|..+.+ -+. ...+.|++.
T Consensus 422 ~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~--~L~--G~vi~fvN~ 468 (613)
T PHA02774 422 TALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIK--FLK--GKVISFVNS 468 (613)
T ss_pred HHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHH--HhC--CCEEEEEEC
Confidence 44444443 333456899999999999999999888 332 224456654
No 387
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.50 E-value=0.0063 Score=47.53 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 388
>PRK15453 phosphoribulokinase; Provisional
Probab=96.50 E-value=0.014 Score=48.48 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 389
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.50 E-value=0.0018 Score=48.07 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|.|.|.+|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 390
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.49 E-value=0.016 Score=45.27 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccccc--------ceeEEEEeCCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYF--------DCHAWVEESLL 66 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F--------~~~~wv~~~~~ 66 (243)
..++.|.|++|+|||+++..++.+......| ..++|++...+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 4588999999999999998877632222222 26778877664
No 391
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.49 E-value=0.017 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+++++|++|+||||++..++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 578999999999999999988877
No 392
>PRK05922 type III secretion system ATPase; Validated
Probab=96.49 E-value=0.017 Score=50.91 Aligned_cols=89 Identities=9% Similarity=0.081 Sum_probs=47.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCcc----cccC-h-----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL-LYDADQILYDIIKFVMPSSRLS----EIME-E----- 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~----~~~~-~----- 92 (243)
+...++|.|..|+|||||.+.+.+. .. .+....+.++. .....+.+.+............ .+.+ .
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~--~~--~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKG--SK--STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcc--CC--CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 3466899999999999999998873 21 22333333333 2233444444443322221100 1111 1
Q ss_pred hhhhHHHHHHHHh--CCCeEEEEEeCCC
Q 045180 93 SSEMKKIILHEYL--MTKRYLIVLDNVW 118 (243)
Q Consensus 93 ~~~~~~~~l~~~l--~~~~~LlvlDdv~ 118 (243)
.... -.+.+++ .++++|+++|++-
T Consensus 232 ~~~a--~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 232 GRAA--MTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHH--HHHHHHHHHcCCCEEEeccchh
Confidence 1111 2233444 4789999999994
No 393
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.035 Score=47.57 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCc-cccc
Q 045180 107 TKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSR-IEIV 149 (243)
Q Consensus 107 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~ 149 (243)
++.-++|+|+++.. +..+.+...+-....++.+|++|.+ ..+.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LL 176 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLL 176 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCc
Confidence 34458888999755 5667777777666667766666655 4443
No 394
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.47 E-value=0.0082 Score=49.58 Aligned_cols=95 Identities=12% Similarity=-0.003 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHhcCccccccccee-EEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----cccC-h---
Q 045180 24 QLSVVAILDSIGLDKTAFA-VEAYSSNYVKYYFDCH-AWVEESLLY-DADQILYDIIKFVMPSSRLS----EIME-E--- 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~-~--- 92 (243)
+-+.++|.|.+|+|||+|| ..+.+ .. +-+.+ +++-+.... ...++...+...-......- .+.+ .
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~--~~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIIN--QK--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHH--hc--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 55554 22 22333 555565543 34555555554321110000 1111 1
Q ss_pred ------hhhhHHHHHHHHhCCCeEEEEEeCCCCc-chhhHH
Q 045180 93 ------SSEMKKIILHEYLMTKRYLIVLDNVWRI-SVWDVI 126 (243)
Q Consensus 93 ------~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~l 126 (243)
-.+. +.+++ .++++|+++||+... ..+.++
T Consensus 144 ~a~~~a~aiA--E~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMG--EYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHH--HHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 1222 33333 478999999999543 334443
No 395
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.46 E-value=0.019 Score=44.22 Aligned_cols=82 Identities=10% Similarity=0.072 Sum_probs=44.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-cccChhhhhHHHHHHHHh
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS-EIMEESSEMKKIILHEYL 105 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~~l 105 (243)
.+.|.|.+|+|||++|..+.. +... ...++...... ..+....|........... ......++. ..+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~--~~~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~--~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA--QSGL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLA--ELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH--HcCC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHH--HHHHhhc
Confidence 688999999999999998876 2211 23444443333 3455556555443322211 111222344 4454433
Q ss_pred CCCeEEEEEeCC
Q 045180 106 MTKRYLIVLDNV 117 (243)
Q Consensus 106 ~~~~~LlvlDdv 117 (243)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 33 336888886
No 396
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.46 E-value=0.0027 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++.|.|.+|+||||+|..++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 397
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.46 E-value=0.013 Score=47.81 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=34.1
Q ss_pred CcccchhhHHH---HHHHHhcCC----CCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 3 DTVGLDNKMEE---LLDLLTEGP----PQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 3 ~~vGR~~~~~~---l~~~L~~~~----~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+.||.++.... |++.|.+++ =.++-|..+|++|.|||.+|+.+++.
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 46777766543 455555542 24788999999999999999999993
No 398
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.45 E-value=0.0032 Score=53.94 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=35.3
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+||-++.+..|...+.++ +..-|.|.|..|+|||++|+.+++
T Consensus 18 ~ivGq~~~k~al~~~~~~p--~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDP--KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred HHhChHHHHHHHHHhccCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 4788888888887777766 456678999999999999998865
No 399
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.086 Score=44.07 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=75.0
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCC----C
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSS----R 85 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~ 85 (243)
.-++|...+..+. -.....++|+.|+||+++|..+++ .+-..-. + . ....+.....++. +
T Consensus 5 ~~~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~--~llC~~~---------~-~---~c~~~~~~~HPD~~~i~p 68 (290)
T PRK05917 5 AWEALIQRVRDQK-VPSAIILHGQDLSNLSARAYELAS--LILKETS---------P-E---AAYKISQKIHPDIHEFSP 68 (290)
T ss_pred HHHHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHH--HHhCCCC---------c-c---HHHHHhcCCCCCEEEEec
Confidence 3456666666653 356788999999999999988776 2211100 0 0 0011111000000 0
Q ss_pred cc--cccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCc-cccccccc--
Q 045180 86 LS--EIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSR-IEIVASFQ-- 153 (243)
Q Consensus 86 ~~--~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~-~~~~~~~~-- 153 (243)
+. .....++.. .+.+.+ .+..=++|+|+++.. +..+.+...+-....++.+|++|.+ ..+...+.
T Consensus 69 ~~~~~~I~idqiR---~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SR 145 (290)
T PRK05917 69 QGKGRLHSIETPR---AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSR 145 (290)
T ss_pred CCCCCcCcHHHHH---HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhc
Confidence 00 011222222 222332 244457888998754 5677777777666667766666666 33433322
Q ss_pred -----ccCCCCCChhhhhhhhHHHHhcCCch
Q 045180 154 -----FENGENIGLDFLSTGGPLRVTYQGWP 179 (243)
Q Consensus 154 -----f~~~~~~~~~~~~~~~~i~~~c~glP 179 (243)
|...... .-..+.+..++...+|-+
T Consensus 146 cq~~~~~~~~~~-~i~~~~~~~l~~~~~g~~ 175 (290)
T PRK05917 146 SLSIHIPMEEKT-LVSKEDIAYLIGYAQGKE 175 (290)
T ss_pred ceEEEccchhcc-CCCHHHHHHHHHHhCCCh
Confidence 4331110 112334566666677744
No 400
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.45 E-value=0.016 Score=49.25 Aligned_cols=87 Identities=8% Similarity=-0.009 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC-CCCCHHHHHHHHHHHhCCCCCcc----ccc-Ch-----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEES-LLYDADQILYDIIKFVMPSSRLS----EIM-EE----- 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~----~~~-~~----- 92 (243)
....++|.|.+|+|||||.+.+... ... +.....-+. ......++.......-+.....- .+. ..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 3467899999999999999988873 222 222223333 33455555555544322111100 011 11
Q ss_pred ----hhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 93 ----SSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 93 ----~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
-.+. +.+++ .++.+|+++||+-
T Consensus 144 ~~~a~~~A--Eyfr~--~g~~Vll~~Dslt 169 (326)
T cd01136 144 AYTATAIA--EYFRD--QGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHH--HHHHH--cCCCeEEEeccch
Confidence 1122 33333 5889999999984
No 401
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.017 Score=48.06 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=57.0
Q ss_pred CcccchhhHHHHHHHHhcC----------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHH
Q 045180 3 DTVGLDNKMEELLDLLTEG----------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQI 72 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 72 (243)
+.-|.+...+.|.+...-+ ....+-+.++|++|.||+.||+.|+. +....| +++++.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT--EAnSTF-----FSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT--EANSTF-----FSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh--hcCCce-----EEeehH------
Confidence 3456777777776654321 23478899999999999999999988 333333 344332
Q ss_pred HHHHHHHhCCCCCcccccChhhhhHHHHHHHHhC-CCeEEEEEeCCC
Q 045180 73 LYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 73 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
.++....+.. +.+. ..+.+.-+ +++.+|.+|.++
T Consensus 201 --DLvSKWmGES--------EkLV--knLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 --DLVSKWMGES--------EKLV--KNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred --HHHHHHhccH--------HHHH--HHHHHHHHhcCCcEEEeehhh
Confidence 2333333332 3444 55555543 578888999985
No 402
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.44 E-value=0.0027 Score=49.55 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.|++|+|||||++.++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4788999999999999999977
No 403
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.43 E-value=0.0079 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.018 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..|+|.|..|+||||+++.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999987
No 404
>PRK13949 shikimate kinase; Provisional
Probab=96.43 E-value=0.0026 Score=48.94 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+++.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999888
No 405
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.43 E-value=0.018 Score=46.25 Aligned_cols=24 Identities=8% Similarity=-0.155 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++++|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999998877754
No 406
>PRK13946 shikimate kinase; Provisional
Probab=96.41 E-value=0.0027 Score=49.45 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.|.+.|++|+||||+++.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999988
No 407
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.41 E-value=0.0073 Score=49.67 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|.+|+||||++..+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 408
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.40 E-value=0.0074 Score=52.14 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
.++-+-|||.-|.|||.|+..+|+...++.+-.. ..-+++..+-+.+..... ..+.. ..+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~----------HFh~Fm~~vh~~l~~~~~------~~~~l--~~va~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV----------HFHEFMLDVHSRLHQLRG------QDDPL--PQVAD 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccc----------cccHHHHHHHHHHHHHhC------CCccH--HHHHH
Confidence 5778999999999999999999985433221111 112233333332221111 11223 55666
Q ss_pred HhCCCeEEEEEeCCCCcch-----hhHHHhhCCCCCCCcEEEEeeCcccc
Q 045180 104 YLMTKRYLIVLDNVWRISV-----WDVIREILPDSQNGSRVLITLSRIEI 148 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~~~-----~~~l~~~l~~~~~~~~iiiTtR~~~~ 148 (243)
.+.++..||.+|.+.-.+. +..+...+. ..|. +||+|.|...
T Consensus 123 ~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRPP 169 (362)
T ss_pred HHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCCh
Confidence 6777888999998754332 233333332 2344 6666666543
No 409
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.017 Score=53.66 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=56.6
Q ss_pred ccchhhHHHHHHHHhcC----------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHH
Q 045180 5 VGLDNKMEELLDLLTEG----------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILY 74 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 74 (243)
=|-++...+|.+-+.-+ -.++.-|.++|++|.|||-+|++|+- +..-. |+++..+ ++
T Consensus 675 GGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--EcsL~-----FlSVKGP----EL-- 741 (953)
T KOG0736|consen 675 GGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--ECSLN-----FLSVKGP----EL-- 741 (953)
T ss_pred cCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--hceee-----EEeecCH----HH--
Confidence 35777778887776542 12355688999999999999999987 32222 3455443 11
Q ss_pred HHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCC
Q 045180 75 DIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWR 119 (243)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 119 (243)
+..-- ..+++... +.+.+.-..++|+|.+|.+++
T Consensus 742 --LNMYV-------GqSE~NVR--~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 742 --LNMYV-------GQSEENVR--EVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHh-------cchHHHHH--HHHHHhhccCCeEEEeccccc
Confidence 11111 12233444 444445566899999999964
No 410
>PF13245 AAA_19: Part of AAA domain
Probab=96.40 E-value=0.0035 Score=41.43 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.|.|++|+|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788899999999965544433
No 411
>PRK13948 shikimate kinase; Provisional
Probab=96.40 E-value=0.0031 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+.|.+.|+.|+||||+++.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999987
No 412
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.40 E-value=0.0031 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|.+|+|||||+..+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHH
Confidence 467999999999999999999887
No 413
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.39 E-value=0.0021 Score=48.93 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
+.|.|++|+||||+|+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999887
No 414
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.39 E-value=0.004 Score=43.96 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh
Q 045180 25 LSVVAILDSIGLDKTAFAVEAY 46 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~ 46 (243)
...++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999998875
No 415
>PRK06936 type III secretion system ATPase; Provisional
Probab=96.39 E-value=0.014 Score=51.41 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----cccCh------
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIMEE------ 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~~~------ 92 (243)
....++|.|.+|+|||||...+++. .. -+.++.+-++... ...++....+..-+.....- .+.+.
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~--~~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRS--AE--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcC--CC--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 3468999999999999999999883 22 2456666666554 33444433332211111000 11111
Q ss_pred ----hhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 93 ----SSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 93 ----~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
-.+. +.+++ .++++|+++|++.
T Consensus 237 ~~~a~tiA--Eyfrd--~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIA--EYFRD--QGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHH--HHHHH--cCCCEEEeccchh
Confidence 1122 33333 5899999999994
No 416
>PRK14527 adenylate kinase; Provisional
Probab=96.39 E-value=0.003 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++.|.|++|+||||+|+.+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 417
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.38 E-value=0.021 Score=52.56 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++..|.|.+|.||||++..+..
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999998887765
No 418
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0048 Score=49.63 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|.+|+|||||++.++.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 419
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.38 E-value=0.012 Score=51.91 Aligned_cols=89 Identities=13% Similarity=0.040 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----ccc-Chh----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIM-EES---- 93 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~-~~~---- 93 (243)
..+.++|.|.+|+|||||++.+++. .. .+.++.+-++... ...++..+.+..-+.....- .+. ...
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~--~~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARN--AD--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc--cC--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 4578899999999999999988873 22 2344445555443 33444444433322111000 111 111
Q ss_pred -hhhHHHHHHHHh--CCCeEEEEEeCCC
Q 045180 94 -SEMKKIILHEYL--MTKRYLIVLDNVW 118 (243)
Q Consensus 94 -~~~~~~~l~~~l--~~~~~LlvlDdv~ 118 (243)
... -.+.+++ .++++|+++||+-
T Consensus 233 ~~~a--~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLT--LAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHH--HHHHHHHHHCCCcEEEEEeCcH
Confidence 111 2233333 4789999999994
No 420
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0028 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|-||=|+||||||+.+++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH
Confidence 46899999999999999999988
No 421
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.37 E-value=0.012 Score=50.36 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.|++|+||||+++.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999886
No 422
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.37 E-value=0.027 Score=50.02 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=33.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|+...+.++.+.+..-......|.|.|..|+||+++|+.+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~ 184 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQ 184 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHH
Confidence 367888888877776654222334567999999999999998876
No 423
>PRK15115 response regulator GlrR; Provisional
Probab=96.37 E-value=0.037 Score=49.16 Aligned_cols=45 Identities=20% Similarity=0.043 Sum_probs=31.7
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|+...+.++.+....-......|.|.|.+|+|||++|+.+.+
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~ 179 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHN 179 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHH
Confidence 356666666666655443222345678999999999999998876
No 424
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.36 E-value=0.01 Score=51.21 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHHHHHHhCC-CCCcccccChhhhhHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD--CHAWVEESLLYDADQILYDIIKFVMP-SSRLSEIMEESSEMKKIIL 101 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~l 101 (243)
...|+|+|+.|+||||++..+.+ .+....+ ..+ +.+.++... .+..+...... ...+ ...+..... ..+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~--~i~~~~~~~~~I-vt~EdpiE~--~~~~~~~~~~~v~Q~~-v~~~~~~~~--~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIR--ELAEAPDSHRKI-LTYEAPIEF--VYDEIETISASVCQSE-IPRHLNNFA--AGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCcEE-EEeCCCceE--eccccccccceeeeee-ccccccCHH--HHH
Confidence 47999999999999999988876 3332221 112 122222110 00000000000 0000 011112344 777
Q ss_pred HHHhCCCeEEEEEeCCCCcchhhHH
Q 045180 102 HEYLMTKRYLIVLDNVWRISVWDVI 126 (243)
Q Consensus 102 ~~~l~~~~~LlvlDdv~~~~~~~~l 126 (243)
+..++..+-.+++..+.+.+.....
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~a 230 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAA 230 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHH
Confidence 8888888889999999877766433
No 425
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.35 E-value=0.0052 Score=45.72 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEEEEeCC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVK-YYFDCHAWVEESL 65 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~F~~~~wv~~~~ 65 (243)
++|.|+|..|+|||||+..+.+ ... +.+......+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4789999999999999999998 554 4555554555443
No 426
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.34 E-value=0.003 Score=45.10 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 045180 28 VAILDSIGLDKTAFAVEAYSSN 49 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~~~ 49 (243)
|.|.|.+|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999988643
No 427
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.34 E-value=0.0083 Score=53.04 Aligned_cols=92 Identities=10% Similarity=0.161 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----ccc-Ch-----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIM-EE----- 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~-~~----- 92 (243)
+-+.++|.|.+|+|||+|+..+.+... +.+-+.++++-+.... ...+++..+...-......- .+. ..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346789999999999999998877422 2234677788776654 34555555554321111000 111 11
Q ss_pred hhhhHHHHHHHHh---CCCeEEEEEeCCC
Q 045180 93 SSEMKKIILHEYL---MTKRYLIVLDNVW 118 (243)
Q Consensus 93 ~~~~~~~~l~~~l---~~~~~LlvlDdv~ 118 (243)
.... -.+.+++ +++++|+++||+.
T Consensus 216 ~~~a--~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTA--LTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHH--HHHHHHHHHhcCCceEEEecChH
Confidence 1122 3344554 3589999999994
No 428
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=96.34 E-value=0.028 Score=48.10 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC-HHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYD-ADQILYDI 76 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 76 (243)
+-+.++|.|..|+|||+|++++++. .+-+.++++-+....+ +.+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~----~~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKY----SNSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhC----CCCCEEEEEEeCCChHHHHHHHHHH
Confidence 3467899999999999999999883 2234677787776543 34455544
No 429
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.33 E-value=0.0029 Score=47.47 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 430
>PRK14530 adenylate kinase; Provisional
Probab=96.33 E-value=0.0029 Score=50.60 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+|+.+++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999887
No 431
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.33 E-value=0.018 Score=50.57 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-----cccChhh----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS-----EIMEESS---- 94 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~---- 94 (243)
....++|.|.+|+|||||+..+... ... ...++...-.......++....+..-+.....- +.....+
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~--~~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARN--TDA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCC--CCC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 3467999999999999999988873 222 223332222223334445444433322111100 1111111
Q ss_pred -hhHHHHHHHHh--CCCeEEEEEeCCCC
Q 045180 95 -EMKKIILHEYL--MTKRYLIVLDNVWR 119 (243)
Q Consensus 95 -~~~~~~l~~~l--~~~~~LlvlDdv~~ 119 (243)
.. -.+.+++ .++++|+++||+..
T Consensus 216 ~~a--~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 216 YTA--TAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHH--HHHHHHHHHcCCCEEEeccchhH
Confidence 11 2234444 47899999999943
No 432
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.33 E-value=0.0061 Score=49.03 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=55.0
Q ss_pred HHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---------
Q 045180 17 LLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS--------- 87 (243)
Q Consensus 17 ~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------- 87 (243)
.|..+=+...++.|.|.+|+|||+|+.+++.. ..++.-..+++++...+ ..++.+.+- .++.+....
T Consensus 11 ~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~-~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~ 86 (226)
T PF06745_consen 11 LLGGGIPKGSVVLISGPPGSGKTTLALQFLYN-GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKII 86 (226)
T ss_dssp HTTTSEETTSEEEEEESTTSSHHHHHHHHHHH-HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEE
T ss_pred hhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHH-hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEE
Confidence 34333235689999999999999999886652 22221346788887554 344444433 343221100
Q ss_pred ----c-----ccChhhhhHHHHHHHHhCC-CeEEEEEeCCC
Q 045180 88 ----E-----IMEESSEMKKIILHEYLMT-KRYLIVLDNVW 118 (243)
Q Consensus 88 ----~-----~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 118 (243)
. ..+.+.+. ..+.+.++. +.-.+|+|.+.
T Consensus 87 d~~~~~~~~~~~~~~~l~--~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 87 DAFPERIGWSPNDLEELL--SKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ESSGGGST-TSCCHHHHH--HHHHHHHHHHTSSEEEEETHH
T ss_pred ecccccccccccCHHHHH--HHHHHHHHhcCCCEEEEECHH
Confidence 1 23455666 666666644 34689999873
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.32 E-value=0.0048 Score=55.77 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=38.8
Q ss_pred cchhhHHHHHHHHhcC---CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEE
Q 045180 6 GLDNKMEELLDLLTEG---PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVE 62 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~ 62 (243)
--.+-++++..||... ....+++.++|++|+||||.++.+++ .. .|+..=|.+
T Consensus 23 vhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~--el--g~~v~Ew~n 78 (519)
T PF03215_consen 23 VHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAK--EL--GFEVQEWIN 78 (519)
T ss_pred ccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHH--Hh--CCeeEEecC
Confidence 3455677888888763 23467999999999999999999888 32 355555654
No 434
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.32 E-value=0.018 Score=46.82 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..|.|++|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999988875
No 435
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.029 Score=50.24 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=31.0
Q ss_pred hhHHHHHHHHh-----cCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 9 NKMEELLDLLT-----EGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 9 ~~~~~l~~~L~-----~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.-+.++..||. .+.-+.+++.|+|++|+||||..+.++.
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 34667777877 3344678999999999999999988876
No 436
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.31 E-value=0.067 Score=44.72 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=89.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHH---HHHHHHHhCCCCCcc------------
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQI---LYDIIKFVMPSSRLS------------ 87 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~---~~~i~~~l~~~~~~~------------ 87 (243)
++-+..|+|+.|+|||.|.+.+.....+.-.-+.++++.-.... ...+. -.++++.-....++.
T Consensus 86 qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~ 165 (369)
T PF02456_consen 86 QPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPK 165 (369)
T ss_pred CceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccc
Confidence 46677889999999999999998877777777788888633221 22221 233333322222110
Q ss_pred ------------cccChhhhhHHHHHHHHhCCCeEEEEEeCCCC----cchhhHHHhhCCCC-------CCCcEEEEeeC
Q 045180 88 ------------EIMEESSEMKKIILHEYLMTKRYLIVLDNVWR----ISVWDVIREILPDS-------QNGSRVLITLS 144 (243)
Q Consensus 88 ------------~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~----~~~~~~l~~~l~~~-------~~~~~iiiTtR 144 (243)
..-+.+.-. ..+.+.-+..++-||+|.+.+ ......+..+||.. +.|-.|+|---
T Consensus 166 Fv~msy~e~t~~~NldI~~p~--NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLH 243 (369)
T PF02456_consen 166 FVEMSYDEATSPENLDITNPN--NIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLH 243 (369)
T ss_pred ceeecHhhhCCccccCCCCch--HHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEec
Confidence 122233333 555566667789999998742 23444444444431 13445665544
Q ss_pred ccccccccc-----c--cC---CCCCChhhhhhhhHHHHhcCCchhHHHHH
Q 045180 145 RIEIVASFQ-----F--EN---GENIGLDFLSTGGPLRVTYQGWPFHILYH 185 (243)
Q Consensus 145 ~~~~~~~~~-----f--~~---~~~~~~~~~~~~~~i~~~c~glPlai~~~ 185 (243)
+-+.-...+ + .. -.++.-.--...+-|-....|+|.||.++
T Consensus 244 NmnPR~d~gGNI~~LKiqAK~HIiSp~~~p~QlsRFin~yt~glp~~i~~L 294 (369)
T PF02456_consen 244 NMNPRRDIGGNIANLKIQAKCHIISPKMHPSQLSRFINNYTKGLPTAISLL 294 (369)
T ss_pred cCCcccccCCCccchhhhceeeeecCCCCHHHHHHHHHHhccCCChhHHHH
Confidence 322211110 1 00 01111222356788888999999999766
No 437
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.31 E-value=0.0072 Score=54.33 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIM 90 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 90 (243)
.+.+..++..+ ..++.|+|+.|+||||+...+.+ .+... . .-.+++.++... .+..+ .+... ...
T Consensus 231 ~~~l~~~~~~~---~GlilitGptGSGKTTtL~a~L~--~l~~~-~-~~iiTiEDpvE~--~~~~~-~q~~v-----~~~ 295 (486)
T TIGR02533 231 LSRFERLIRRP---HGIILVTGPTGSGKTTTLYAALS--RLNTP-E-RNILTVEDPVEY--QIEGI-GQIQV-----NPK 295 (486)
T ss_pred HHHHHHHHhcC---CCEEEEEcCCCCCHHHHHHHHHh--ccCCC-C-CcEEEEcCCeee--ecCCC-ceEEE-----ccc
Confidence 33444444333 46899999999999999987766 33222 1 112233322100 00000 00000 000
Q ss_pred ChhhhhHHHHHHHHhCCCeEEEEEeCCCCcchhhH
Q 045180 91 EESSEMKKIILHEYLMTKRYLIVLDNVWRISVWDV 125 (243)
Q Consensus 91 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~ 125 (243)
...... ..++..|+..+=.|++.++.+.+....
T Consensus 296 ~g~~f~--~~lr~~LR~dPDvI~vGEiRd~eta~~ 328 (486)
T TIGR02533 296 IGLTFA--AGLRAILRQDPDIIMVGEIRDLETAQI 328 (486)
T ss_pred cCccHH--HHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 001234 778888888888999999988775544
No 438
>PLN02348 phosphoribulokinase
Probab=96.31 E-value=0.0059 Score=52.89 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999887
No 439
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.31 E-value=0.027 Score=43.88 Aligned_cols=20 Identities=20% Similarity=0.062 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 045180 27 VVAILDSIGLDKTAFAVEAY 46 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~ 46 (243)
++.|+|+.|.||||+.+.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 46799999999999998876
No 440
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.30 E-value=0.011 Score=52.31 Aligned_cols=92 Identities=10% Similarity=0.114 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc----ccc-Chh----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY-DADQILYDIIKFVMPSSRLS----EIM-EES---- 93 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~----~~~-~~~---- 93 (243)
.-+.++|.|.+|+|||+|+..++...... +=+.++++-++... .+.+++..+...-......- .+. ...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999998877632211 11346666665543 34556666654322111100 111 111
Q ss_pred -hhhHHHHHHHHh---CCCeEEEEEeCCC
Q 045180 94 -SEMKKIILHEYL---MTKRYLIVLDNVW 118 (243)
Q Consensus 94 -~~~~~~~l~~~l---~~~~~LlvlDdv~ 118 (243)
... -.+.+++ .++++||++|++.
T Consensus 222 ~~~a--~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 222 ALTG--LTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHH--HHHHHHHHHhcCCceEEEecchH
Confidence 112 2344444 5789999999994
No 441
>PLN02200 adenylate kinase family protein
Probab=96.30 E-value=0.0037 Score=50.74 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.++.|.|++|+||||+|+.+++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998877
No 442
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.29 E-value=0.0033 Score=49.66 Aligned_cols=103 Identities=15% Similarity=0.095 Sum_probs=47.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-ccccChhhhhHHHHH
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRL-SEIMEESSEMKKIIL 101 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l 101 (243)
+.+.++.+.|.+|+||||++..+.. ... ....+.++...-.....-+..+... ...... ........+. +.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~--~~~--~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~--~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLE--EFG--GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLA--EKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHH--HT---TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHH--HHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhh--hcc--CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHH--HHH
Confidence 4688999999999999999988766 221 2445555432211100112222222 111110 0112223445 555
Q ss_pred HHHhCCCeEEEEEeCCCCc-chhhHHHhhCCC
Q 045180 102 HEYLMTKRYLIVLDNVWRI-SVWDVIREILPD 132 (243)
Q Consensus 102 ~~~l~~~~~LlvlDdv~~~-~~~~~l~~~l~~ 132 (243)
.+....+++=+|+|..-.. +....+...+..
T Consensus 86 ~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~ 117 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSNPSKLRKLIREAKA 117 (199)
T ss_dssp HHHHHHCT--EEEE--TTSSHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEecCCCChhHHHHHHHHHHc
Confidence 5555566777788877543 444434444443
No 443
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.28 E-value=0.014 Score=51.62 Aligned_cols=90 Identities=10% Similarity=-0.016 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc----ccc-Chh-----
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS----EIM-EES----- 93 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~-~~~----- 93 (243)
....++|.|.+|+|||||++.++..... . ..++...-.+.....++...+...-+.....- .+. ...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~--d-~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC--D-VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC--C-eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998873221 1 13444333333345555555543322111100 111 111
Q ss_pred hhhHHHHHHHHh--CCCeEEEEEeCCC
Q 045180 94 SEMKKIILHEYL--MTKRYLIVLDNVW 118 (243)
Q Consensus 94 ~~~~~~~l~~~l--~~~~~LlvlDdv~ 118 (243)
... -.+.+++ .++++|+++|++.
T Consensus 239 ~~a--~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 239 YVA--TAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHH--HHHHHHHHHcCCCEEEeccchh
Confidence 111 2233333 4789999999994
No 444
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.25 E-value=0.0074 Score=48.36 Aligned_cols=41 Identities=17% Similarity=-0.020 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYD 68 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~ 68 (243)
.|+|+|-||+||||+|..++.. -...+-..++=|+...+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYNVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCceEEEEeCCCCCC
Confidence 5899999999999999875541 1222212344455555443
No 445
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.25 E-value=0.0041 Score=47.95 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|.|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 35689999999999999999987
No 446
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.24 E-value=0.043 Score=50.67 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+...++|+|.+|+|||||++.+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998876
No 447
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.23 E-value=0.018 Score=46.18 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYD 75 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 75 (243)
|-+.|..+=....++.|.|.+|+|||++|.+++. .....-..+++++...+ ..++...
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~--~~~~~g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLY--QGLKNGEKAMYISLEER--EERILGY 62 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCC--HHHHHHH
Confidence 3344444333567999999999999999988876 32222346778877653 4444333
No 448
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.23 E-value=0.029 Score=50.30 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHhcCccc-----ccccceeEEEEeCCCCCHHHHHHHHHHHhCC-CCCcc-----cccC
Q 045180 24 QLSVVAILDSIGLDKTAFA-VEAYSSNYV-----KYYFDCHAWVEESLLYDADQILYDIIKFVMP-SSRLS-----EIME 91 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa-~~~~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~-----~~~~ 91 (243)
+-+..+|.|..|+|||+|| ..+.+...+ .++-+.++++-+++..+-..-+.+.++.-+. ....- +...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 555553222 1233467788887765433223333333331 11000 1111
Q ss_pred hhh-----hhHHHHHHHHh--CCCeEEEEEeCCCC
Q 045180 92 ESS-----EMKKIILHEYL--MTKRYLIVLDNVWR 119 (243)
Q Consensus 92 ~~~-----~~~~~~l~~~l--~~~~~LlvlDdv~~ 119 (243)
..+ .. -.+-+++ +++.+|+|+||+..
T Consensus 268 ~~r~~Apy~a--~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSG--VTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHH--HHHHHHHHHcCCCEEEEEcCchH
Confidence 110 11 2233333 47899999999953
No 449
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.23 E-value=0.0045 Score=51.40 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.|+|.|-||+||||++..++.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4688999999999998877765
No 450
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.23 E-value=0.0034 Score=48.25 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
+.|+|.+|+|||||++.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 68999999999999999887
No 451
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.23 E-value=0.028 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.|.|.+|+||||+++.+..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~ 360 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIE 360 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988876
No 452
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=96.22 E-value=0.024 Score=50.26 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....++|.|.+|+|||||++.+..
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999988877
No 453
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.22 E-value=0.01 Score=51.50 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+.+.+... ....+.|.|.||+|||+|.+.+.+
T Consensus 11 ~~v~~~~~~~--~~~~~fv~G~~GtGKs~l~~~i~~ 44 (364)
T PF05970_consen 11 DTVIEAIENE--EGLNFFVTGPAGTGKSFLIKAIID 44 (364)
T ss_pred HHHHHHHHcc--CCcEEEEEcCCCCChhHHHHHHHH
Confidence 3444444443 457889999999999999999887
No 454
>PRK06761 hypothetical protein; Provisional
Probab=96.21 E-value=0.009 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++.|.|++|+||||+++.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999983
No 455
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0041 Score=47.43 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 045180 27 VVAILDSIGLDKTAFAVEAY 46 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~ 46 (243)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998875
No 456
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.033 Score=45.25 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=32.3
Q ss_pred cchhhHHHHHHHHhcCC-----------CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 6 GLDNKMEELLDLLTEGP-----------PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~~-----------~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
|-+..+++|.+.+.-+- .+++-+.++|++|.|||-||+.+++
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVah 203 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 203 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHh
Confidence 35666777766654320 3577899999999999999999998
No 457
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.005 Score=57.35 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=34.1
Q ss_pred Ccccchh---hHHHHHHHHhcCC-------CCceEEEEEcCCCCcHHHHHHHHhcCc
Q 045180 3 DTVGLDN---KMEELLDLLTEGP-------PQLSVVAILDSIGLDKTAFAVEAYSSN 49 (243)
Q Consensus 3 ~~vGR~~---~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~~~ 49 (243)
++.|-++ |++++++.|..++ .-++=|.++|++|+|||-||++++...
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 3455444 5556666666652 246778999999999999999999843
No 458
>PRK13768 GTPase; Provisional
Probab=96.20 E-value=0.0068 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++.|.|++|+||||++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 5789999999999999987776
No 459
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.19 E-value=0.024 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+...++|+|.+|+|||||++.+..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999998875
No 460
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.19 E-value=0.0085 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++++++.|..|+|||||..++.+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999999887
No 461
>PRK13975 thymidylate kinase; Provisional
Probab=96.18 E-value=0.0042 Score=48.67 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..|+|.|+.|+||||+|+.+++
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 462
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.18 E-value=0.013 Score=46.15 Aligned_cols=23 Identities=13% Similarity=-0.094 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|+.|+||||+++.+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999887
No 463
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.18 E-value=0.0057 Score=47.64 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.+.|.|++|+||+||+..+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~ 24 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQ 24 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 36789999999999999999988
No 464
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.16 E-value=0.029 Score=53.20 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.|.|.+|+||||++..+..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~ 390 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAARE 390 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHH
Confidence 5889999999999999988765
No 465
>PRK08356 hypothetical protein; Provisional
Probab=96.16 E-value=0.0058 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEA 45 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~ 45 (243)
..+++|+|++|+||||+|..+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999988
No 466
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.15 E-value=0.031 Score=46.18 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeE-EEEeCCCCCHHHHHHHHHHHhCCCCCcc-cc
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHA-WVEESLLYDADQILYDIIKFVMPSSRLS-EI 89 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~ 89 (243)
+++.+.|...-...+.+.|.|..|+||||++..+.. .+... +..+ -+.-.....+ ....... ..
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~--~i~~~-~~~iv~iEd~~E~~l-----------~~~~~~~~~~ 179 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLE--EIPPE-DERIVTIEDPPELRL-----------PGPNQIQIQT 179 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHH--HCHTT-TSEEEEEESSS-S-------------SCSSEEEEEE
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhh--hcccc-ccceEEeccccceee-----------cccceEEEEe
Confidence 444444443311358899999999999999988876 44443 2222 2221111110 0000000 01
Q ss_pred -cChhhhhHHHHHHHHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEE-EEeeC
Q 045180 90 -MEESSEMKKIILHEYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRV-LITLS 144 (243)
Q Consensus 90 -~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~i-iiTtR 144 (243)
.+..... +.++..|+..+=.++++.+.+.+.+..+... ..|..+ +-|..
T Consensus 180 ~~~~~~~~--~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 180 RRDEISYE--DLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp ETTTBSHH--HHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred ecCcccHH--HHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 1233445 7788888888889999999988777664433 225566 44443
No 467
>PRK10646 ADP-binding protein; Provisional
Probab=96.15 E-value=0.01 Score=44.69 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 8 DNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 8 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+++..++.+.|...-....+|.+.|.=|+||||+++.+++.
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666666543223468999999999999999999874
No 468
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.15 E-value=0.0036 Score=47.66 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|+|.|..|+|||||+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999887
No 469
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.14 E-value=0.019 Score=49.77 Aligned_cols=95 Identities=12% Similarity=0.002 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccccc-ceeEEEEeCCCCCHHHHHHHHHHHhC-CCCCcccccChhhhhHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYF-DCHAWVEESLLYDADQILYDIIKFVM-PSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
..+.|.|+.|+||||++..+.+ .+.... +..+. .+.++.... +.. ...+. ....+ -..+..... ..++.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~--~i~~~~~~~~Iv-tiEdp~E~~--~~~-~~~~~~~~q~e-vg~~~~~~~--~~l~~ 220 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQ--HCGETYPDRKIV-TYEDPIEYI--LGS-PDDLLPPAQSQ-IGRDVDSFA--NGIRL 220 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEE-EEecCchhc--cCC-Cceeecccccc-cCCCccCHH--HHHHH
Confidence 5788999999999999988876 333222 22222 232221100 000 00000 00000 111223445 77888
Q ss_pred HhCCCeEEEEEeCCCCcchhhHHHhh
Q 045180 104 YLMTKRYLIVLDNVWRISVWDVIREI 129 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~~~~~~~l~~~ 129 (243)
.|+..+=.|+++.+.+.+..+.....
T Consensus 221 aLR~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 221 ALRRAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred hhccCCCEEeeCCCCCHHHHHHHHHH
Confidence 88889999999999888777654333
No 470
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.14 E-value=0.0088 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|.+.|.=|+||||+++.+++
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999999886
No 471
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.14 E-value=0.042 Score=54.51 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 9 NKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 9 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
...++|.+.+... +++.|+|..|+||||..-+++.+ ......+.+-++-.......++...+...++.
T Consensus 77 ~~r~~Il~ai~~~----~VviI~GeTGSGKTTqlPq~lle--~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~ 144 (1294)
T PRK11131 77 QKKQDILEAIRDH----QVVIVAGETGSGKTTQLPKICLE--LGRGVKGLIGHTQPRRLAARTVANRIAEELET 144 (1294)
T ss_pred HHHHHHHHHHHhC----CeEEEECCCCCCHHHHHHHHHHH--cCCCCCCceeeCCCcHHHHHHHHHHHHHHHhh
Confidence 4456666666654 68999999999999976554442 11111223322222222356677777776654
No 472
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.14 E-value=0.041 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....++|+|++|+|||||++.+..
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998876
No 473
>PRK14531 adenylate kinase; Provisional
Probab=96.13 E-value=0.0046 Score=48.11 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.|.|.|++|+||||+++.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999877
No 474
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.13 E-value=0.0084 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 457999999999999999988654
No 475
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.13 E-value=0.033 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....++|+|.+|+|||||++.+..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998865
No 476
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.13 E-value=0.027 Score=49.71 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=31.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL-YDADQILYDI 76 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i 76 (243)
....++|.|.+|+|||||.+.+.+. . +.+..++..+... ..+.+++.+.
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~--~--~~d~~vi~~iGeRgrEv~efl~~~ 203 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNA--P--DADSNVLVLIGERGREVREFIDFT 203 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCC--C--CCCEEEEEEECCCchHHHHHHHHh
Confidence 4568899999999999999988872 2 2333444444443 3333444443
No 477
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.011 Score=48.06 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 6 GLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
|.+-..+++.+...-+ =+.++-|.++|++|.|||-||+.+++ .....|
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~--~t~a~f 217 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN--HTTAAF 217 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhh--ccchhe
Confidence 4555556665554322 14678899999999999999999999 455455
No 478
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.11 E-value=0.0098 Score=53.91 Aligned_cols=24 Identities=13% Similarity=-0.051 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.-+..+|+|++|+|||+|++.+++
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn 438 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIAN 438 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHH
Confidence 346688999999999999999888
No 479
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.11 E-value=0.049 Score=43.20 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++.|.|+.|.||||+.+.+..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999887754
No 480
>COG4639 Predicted kinase [General function prediction only]
Probab=96.10 E-value=0.018 Score=43.27 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|++.|.+|+||+|+|++-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC
Confidence 36789999999999999988444
No 481
>PRK14532 adenylate kinase; Provisional
Probab=96.10 E-value=0.0044 Score=48.35 Aligned_cols=20 Identities=10% Similarity=0.039 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|.+.|++|+||||+|+.+++
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999887
No 482
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.10 E-value=0.0042 Score=48.49 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|.|.|++|+||||+|+.++.
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999887
No 483
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.065 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
-...+.++|+.|+|||++|..+++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHH
Confidence 456788999999999999988876
No 484
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.10 E-value=0.058 Score=49.00 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=64.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCc-----ccccc-cceeEEEEeCC-----C----------C-C-HHHHHHHHHHHh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSN-----YVKYY-FDCHAWVEESL-----L----------Y-D-ADQILYDIIKFV 80 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~-----~~~~~-F~~~~wv~~~~-----~----------~-~-~~~~~~~i~~~l 80 (243)
....|+|+|+.|+|||||.+.+.... .+... --.+.++.-.. . + + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 34579999999999999999985421 11100 00112222111 0 0 1 134455555565
Q ss_pred CCCCCcc----cccCh-hhhhHHHHHHHHhCCCeEEEEEeCCCCc---chhhHHHhhCCCCCCCcEEEEeeCccccc
Q 045180 81 MPSSRLS----EIMEE-SSEMKKIILHEYLMTKRYLIVLDNVWRI---SVWDVIREILPDSQNGSRVLITLSRIEIV 149 (243)
Q Consensus 81 ~~~~~~~----~~~~~-~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~iiiTtR~~~~~ 149 (243)
+-+.... ...+- +... -.+...+-.++-+||||.--+. +..+.+...+.... |+ ||+.|-++...
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~R--l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-Gt-vl~VSHDr~Fl 499 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKAR--LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-GT-VLLVSHDRYFL 499 (530)
T ss_pred CCChHHHhCchhhcCHhHHHH--HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-Ce-EEEEeCCHHHH
Confidence 5554321 11111 2222 3445555678889999987554 44455555554433 54 77777776543
No 485
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.09 E-value=0.005 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++.+.|++|+||||+|+++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999999877
No 486
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.09 E-value=0.023 Score=46.11 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=33.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDII 77 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 77 (243)
...++.|.|.+|+|||+++.+++.+. ..++-..++|++... +..++...++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~-~~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENI-AKKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCceEEEeCCC--CHHHHHHHHH
Confidence 45789999999999999998876632 222123567776544 4445555544
No 487
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.09 E-value=0.0084 Score=49.45 Aligned_cols=39 Identities=13% Similarity=-0.048 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
++|+|.|-||+||||++..++. .....-..++-++....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~--~La~~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA--ALAEMGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH--HHHhCCCeEEEEEcCCC
Confidence 4677889999999999988776 33222224555555444
No 488
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.09 E-value=0.0051 Score=50.03 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=21.2
Q ss_pred EEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 30 ILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 30 I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
|.|++|+||||++..+.+ -.......+.-+++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~--~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE--WLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHH--HHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHH--HHHhccCCceEEEcch
Confidence 579999999999998877 3333333455555443
No 489
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.08 E-value=0.046 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....++|+|++|+|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999876
No 490
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.07 E-value=0.031 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|+|+|.+|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998864
No 491
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.07 E-value=0.0051 Score=46.96 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|.|.|++|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999877
No 492
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.07 E-value=0.018 Score=51.22 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccc--eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc-----cccCh---
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD--CHAWVEESLLY-DADQILYDIIKFVMPSSRLS-----EIMEE--- 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-----~~~~~--- 92 (243)
.-+.++|.|.+|+|||+|+..+.+.......+. .++++-++... ...+++..+...-......- +....
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 346789999999999999998887433321121 45566665543 34555555553321111100 11111
Q ss_pred --hhhhHHHHHHHHhC---CCeEEEEEeCCC
Q 045180 93 --SSEMKKIILHEYLM---TKRYLIVLDNVW 118 (243)
Q Consensus 93 --~~~~~~~~l~~~l~---~~~~LlvlDdv~ 118 (243)
.... -.+.++++ ++++|+++||+.
T Consensus 220 ~a~~~a--~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 220 VTPRMA--LTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHH--HHHHHHHHHccCCcEEEEEcChh
Confidence 1112 33455554 679999999994
No 493
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=96.06 E-value=0.13 Score=40.90 Aligned_cols=109 Identities=11% Similarity=0.006 Sum_probs=64.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccc----eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc----cccChhhh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD----CHAWVEESLLYDADQILYDIIKFVMPSSRLS----EIMEESSE 95 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~ 95 (243)
...+|-|+|++|+|||.+.+++..+--+-..|. .+++++.+..++...+.+.+-..+....-.+ .-.+++..
T Consensus 37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~~~ 116 (293)
T KOG2859|consen 37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEEQL 116 (293)
T ss_pred cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHhHH
Confidence 347899999999999997766654333344453 5678888989998777666655554432211 12233444
Q ss_pred hHHHHHHHHhCCCeEEEEEeCCCCcchhhHHHhhCCCCC
Q 045180 96 MKKIILHEYLMTKRYLIVLDNVWRISVWDVIREILPDSQ 134 (243)
Q Consensus 96 ~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~ 134 (243)
. +...++++.-+++=..|+.+-...+..+...+.+..
T Consensus 117 e--Ei~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p 153 (293)
T KOG2859|consen 117 E--EIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDP 153 (293)
T ss_pred H--HHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCC
Confidence 4 555666555455555665532334445555544333
No 494
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.06 E-value=0.0052 Score=47.57 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++.|.|++|+||||+++.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 495
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.06 E-value=0.088 Score=44.76 Aligned_cols=90 Identities=9% Similarity=-0.009 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL 105 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 105 (243)
..+.|.|..|+||||+++.+.. .+...++..--+.+.....+.-...... ++ ......... +.++..|
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~--~~~~~~~~~rivtIEd~~El~~~~~~~v-~~-------~~~~~~~~~--~ll~~aL 216 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIIN--EMVIQDPTERVFIIEDTGEIQCAAENYV-QY-------HTSIDVNMT--ALLKTTL 216 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--hhhhcCCCceEEEEcCCCccccCCCCEE-EE-------ecCCCCCHH--HHHHHHh
Confidence 6788999999999999998876 2211111111122222211100000000 00 000112344 7778888
Q ss_pred CCCeEEEEEeCCCCcchhhHHH
Q 045180 106 MTKRYLIVLDNVWRISVWDVIR 127 (243)
Q Consensus 106 ~~~~~LlvlDdv~~~~~~~~l~ 127 (243)
+..+=.||+..+.+.+.++.+.
T Consensus 217 R~~PD~IivGEiR~~Ea~~~l~ 238 (319)
T PRK13894 217 RMRPDRILVGEVRGPEALDLLM 238 (319)
T ss_pred cCCCCEEEEeccCCHHHHHHHH
Confidence 8888889999998887766443
No 496
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.06 E-value=0.023 Score=49.94 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....++|.|.+|+|||||...+.+
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~ 159 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMAR 159 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999988887
No 497
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.05 E-value=0.004 Score=50.97 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|.+.|++|+||||+|+.+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999887
No 498
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.04 E-value=0.075 Score=41.27 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|++|+|||||-..++.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHh
Confidence 457899999999999999988875
No 499
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.03 E-value=0.012 Score=50.07 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=34.6
Q ss_pred CcccchhhHHH---HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 3 DTVGLDNKMEE---LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 3 ~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
-|||..+..+. +.+++..+.-..+.|.+.|++|.|||+||..+.+.
T Consensus 40 G~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~e 88 (450)
T COG1224 40 GLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARE 88 (450)
T ss_pred cccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHH
Confidence 46776655543 45666665445688999999999999999999883
No 500
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.03 E-value=0.052 Score=42.58 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.|+++|.+|+|||||+..+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC
Confidence 4789999999999999998864
Done!