Query 045180
Match_columns 243
No_of_seqs 237 out of 1662
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:42:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.7E-41 2.3E-45 301.7 19.4 226 5-243 131-412 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 9.3E-37 3.2E-41 296.2 19.8 233 2-243 124-406 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 5.9E-34 2E-38 258.5 18.1 232 2-243 124-406 (591)
4 1vt4_I APAF-1 related killer D 100.0 3.3E-34 1.1E-38 266.9 15.1 221 4-243 130-398 (1221)
5 1w5s_A Origin recognition comp 99.6 6.6E-15 2.2E-19 127.3 10.3 141 2-147 22-190 (412)
6 2v1u_A Cell division control p 99.5 9.4E-13 3.2E-17 112.6 16.1 141 2-147 19-178 (387)
7 2qen_A Walker-type ATPase; unk 99.5 8.6E-14 3E-18 117.5 8.9 170 2-185 12-245 (350)
8 2qby_B CDC6 homolog 3, cell di 99.5 7.4E-13 2.5E-17 113.4 14.7 141 2-146 20-174 (384)
9 2fna_A Conserved hypothetical 99.4 7.3E-13 2.5E-17 111.9 11.8 131 2-147 13-181 (357)
10 1fnn_A CDC6P, cell division co 99.4 6.4E-12 2.2E-16 107.6 16.2 140 2-146 17-169 (389)
11 2qby_A CDC6 homolog 1, cell di 99.4 2E-12 6.8E-17 110.4 11.2 141 2-147 20-174 (386)
12 1njg_A DNA polymerase III subu 99.3 3E-11 1E-15 96.1 10.9 136 2-147 23-167 (250)
13 2chg_A Replication factor C sm 99.1 1.5E-10 5.2E-15 90.9 8.7 123 2-147 17-143 (226)
14 3te6_A Regulatory protein SIR3 99.0 3.9E-09 1.3E-13 88.0 11.8 111 4-120 22-144 (318)
15 1sxj_B Activator 1 37 kDa subu 98.9 1.4E-09 4.9E-14 90.5 7.4 119 2-146 21-147 (323)
16 1jbk_A CLPB protein; beta barr 98.9 1.4E-09 4.7E-14 83.3 6.0 44 2-47 22-65 (195)
17 1iqp_A RFCS; clamp loader, ext 98.8 6.1E-09 2.1E-13 86.8 7.0 116 2-146 25-150 (327)
18 2p65_A Hypothetical protein PF 98.7 1E-08 3.5E-13 78.2 5.6 44 2-47 22-65 (187)
19 2chq_A Replication factor C sm 98.7 3.5E-08 1.2E-12 81.9 7.4 117 2-147 17-143 (319)
20 3n70_A Transport activator; si 98.6 7E-08 2.4E-12 71.3 7.4 112 3-145 2-115 (145)
21 1jr3_A DNA polymerase III subu 98.6 1.3E-07 4.5E-12 80.3 10.0 45 2-47 16-60 (373)
22 3h4m_A Proteasome-activating n 98.6 3.9E-08 1.3E-12 80.6 5.3 46 2-47 17-73 (285)
23 2w58_A DNAI, primosome compone 98.6 1.5E-07 5.1E-12 73.2 7.5 121 3-145 26-158 (202)
24 3u61_B DNA polymerase accessor 98.5 4.5E-07 1.5E-11 75.7 9.5 117 2-147 26-147 (324)
25 3syl_A Protein CBBX; photosynt 98.5 2.2E-07 7.7E-12 76.9 6.7 45 3-47 32-89 (309)
26 3ec2_A DNA replication protein 98.5 2.6E-07 8.9E-12 70.5 6.5 115 9-146 21-143 (180)
27 1hqc_A RUVB; extended AAA-ATPa 98.5 4.2E-07 1.4E-11 75.7 8.1 46 2-47 12-60 (324)
28 3bos_A Putative DNA replicatio 98.5 1.1E-07 3.9E-12 75.4 4.3 58 2-63 28-88 (242)
29 2z4s_A Chromosomal replication 98.4 4.4E-07 1.5E-11 79.3 8.1 122 3-146 106-237 (440)
30 3eie_A Vacuolar protein sortin 98.4 4E-07 1.4E-11 76.2 7.4 46 2-47 18-73 (322)
31 2qz4_A Paraplegin; AAA+, SPG7, 98.4 3.6E-07 1.2E-11 73.7 6.7 46 2-47 6-61 (262)
32 1sxj_D Activator 1 41 kDa subu 98.4 3.7E-07 1.3E-11 76.9 6.6 44 2-47 37-80 (353)
33 3uk6_A RUVB-like 2; hexameric 98.4 5.4E-06 1.8E-10 70.2 13.4 46 2-47 44-92 (368)
34 3co5_A Putative two-component 98.4 2.9E-07 1E-11 67.7 4.2 46 2-47 4-49 (143)
35 1d2n_A N-ethylmaleimide-sensit 98.3 2.1E-06 7.2E-11 69.9 9.3 46 2-47 33-86 (272)
36 1l8q_A Chromosomal replication 98.3 8.5E-07 2.9E-11 74.1 7.1 122 3-146 12-141 (324)
37 1sxj_E Activator 1 40 kDa subu 98.3 1.9E-06 6.6E-11 72.6 9.3 44 2-47 14-58 (354)
38 1xwi_A SKD1 protein; VPS4B, AA 98.3 4.1E-06 1.4E-10 70.1 11.0 46 2-47 12-67 (322)
39 3d8b_A Fidgetin-like protein 1 98.3 7.3E-07 2.5E-11 75.7 5.7 46 2-47 84-139 (357)
40 3vfd_A Spastin; ATPase, microt 98.3 1.5E-06 5.3E-11 74.5 7.7 45 3-47 116-170 (389)
41 2r62_A Cell division protease 98.3 9E-07 3.1E-11 71.8 5.5 46 2-47 11-66 (268)
42 3pvs_A Replication-associated 98.3 5E-06 1.7E-10 72.6 10.6 44 2-47 26-72 (447)
43 3cf0_A Transitional endoplasmi 98.3 5.1E-06 1.8E-10 68.7 10.2 45 3-47 16-71 (301)
44 1ojl_A Transcriptional regulat 98.3 5.5E-06 1.9E-10 68.7 10.1 47 1-47 1-47 (304)
45 3pxg_A Negative regulator of g 98.2 3.4E-06 1.2E-10 74.2 9.1 44 2-47 180-223 (468)
46 1sxj_A Activator 1 95 kDa subu 98.2 2.6E-06 8.7E-11 75.9 8.4 46 2-47 39-99 (516)
47 2zan_A Vacuolar protein sortin 98.2 5.4E-06 1.8E-10 72.4 9.7 46 2-47 134-189 (444)
48 2qp9_X Vacuolar protein sortin 98.2 2.4E-06 8.1E-11 72.5 7.0 46 2-47 51-106 (355)
49 2bjv_A PSP operon transcriptio 98.2 2.1E-06 7.3E-11 69.5 6.3 46 2-47 6-51 (265)
50 3b9p_A CG5977-PA, isoform A; A 98.2 3.1E-06 1.1E-10 69.6 7.3 46 2-47 21-76 (297)
51 4fcw_A Chaperone protein CLPB; 98.2 3.8E-06 1.3E-10 69.4 7.3 62 2-65 17-85 (311)
52 3hu3_A Transitional endoplasmi 98.1 3.1E-06 1E-10 74.8 6.5 45 3-47 205-260 (489)
53 1sxj_C Activator 1 40 kDa subu 98.1 7.8E-06 2.7E-10 68.7 8.4 43 3-47 26-68 (340)
54 1a5t_A Delta prime, HOLB; zinc 98.1 3E-05 1E-09 65.1 11.8 39 8-47 8-46 (334)
55 1qvr_A CLPB protein; coiled co 98.1 3.9E-06 1.3E-10 79.1 6.8 44 2-47 170-213 (854)
56 3pxi_A Negative regulator of g 98.1 1E-05 3.6E-10 75.2 9.1 44 2-47 180-223 (758)
57 2gno_A DNA polymerase III, gam 98.0 3.6E-05 1.2E-09 63.8 9.8 118 6-146 1-122 (305)
58 1r6b_X CLPA protein; AAA+, N-t 98.0 6.9E-05 2.3E-09 69.7 12.3 44 2-47 186-229 (758)
59 2qgz_A Helicase loader, putati 97.9 3.3E-06 1.1E-10 70.2 2.8 52 10-63 136-189 (308)
60 2ce7_A Cell division protein F 97.9 1.6E-05 5.4E-10 69.9 6.9 45 3-47 17-71 (476)
61 1lv7_A FTSH; alpha/beta domain 97.9 1.6E-05 5.6E-10 63.9 5.9 46 2-47 12-67 (257)
62 4b4t_J 26S protease regulatory 97.9 1.3E-05 4.4E-10 68.7 5.3 51 3-55 149-210 (405)
63 4b4t_L 26S protease subunit RP 97.9 1.8E-05 6.3E-10 68.6 6.1 50 3-54 182-242 (437)
64 2cvh_A DNA repair and recombin 97.9 0.0001 3.5E-09 57.4 9.9 88 24-119 19-116 (220)
65 2kjq_A DNAA-related protein; s 97.9 1.4E-05 4.6E-10 59.2 4.5 23 25-47 36-58 (149)
66 3t15_A Ribulose bisphosphate c 97.8 2.4E-05 8.2E-10 64.4 6.2 24 24-47 35-58 (293)
67 4b4t_H 26S protease regulatory 97.8 2E-05 6.7E-10 68.6 5.7 51 3-55 210-271 (467)
68 3pfi_A Holliday junction ATP-d 97.8 1.2E-05 3.9E-10 67.4 3.9 46 2-47 29-77 (338)
69 4b4t_K 26S protease regulatory 97.8 2.6E-05 8.8E-10 67.5 5.9 50 3-54 173-233 (428)
70 1g5t_A COB(I)alamin adenosyltr 97.8 2.3E-05 7.7E-10 60.5 4.9 114 25-146 28-163 (196)
71 3pxi_A Negative regulator of g 97.7 5E-05 1.7E-09 70.6 7.5 46 2-47 491-543 (758)
72 4b4t_M 26S protease regulatory 97.7 2.5E-05 8.6E-10 67.7 5.0 50 3-54 182-242 (434)
73 3hr8_A Protein RECA; alpha and 97.7 0.00013 4.3E-09 61.7 8.8 87 24-119 60-150 (356)
74 2c9o_A RUVB-like 1; hexameric 97.7 5.4E-05 1.8E-09 66.3 6.7 46 2-47 37-85 (456)
75 2b8t_A Thymidine kinase; deoxy 97.7 2.2E-05 7.4E-10 62.1 3.3 114 24-147 11-127 (223)
76 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00026 8.9E-09 62.5 10.6 46 2-47 31-86 (499)
77 4b4t_I 26S protease regulatory 97.7 4.5E-05 1.5E-09 65.7 5.4 51 3-55 183-244 (437)
78 3cf2_A TER ATPase, transitiona 97.7 4E-05 1.4E-09 71.2 5.4 92 3-118 205-307 (806)
79 3io5_A Recombination and repai 97.6 0.00035 1.2E-08 57.9 10.0 84 27-119 30-122 (333)
80 1ofh_A ATP-dependent HSL prote 97.6 2.7E-05 9.2E-10 64.1 2.9 46 2-47 15-72 (310)
81 2vhj_A Ntpase P4, P4; non- hyd 97.6 6E-05 2.1E-09 62.6 4.7 69 25-119 123-193 (331)
82 1xp8_A RECA protein, recombina 97.6 0.0003 1E-08 59.7 9.1 86 24-118 73-162 (366)
83 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.0002 6.9E-09 56.1 7.3 47 25-75 23-69 (235)
84 2zr9_A Protein RECA, recombina 97.5 0.00039 1.3E-08 58.6 8.8 86 24-118 60-149 (349)
85 3m6a_A ATP-dependent protease 97.5 0.00013 4.5E-09 65.2 5.8 45 3-47 82-130 (543)
86 1qvr_A CLPB protein; coiled co 97.5 0.00018 6.2E-09 67.8 6.9 45 3-47 559-610 (854)
87 1in4_A RUVB, holliday junction 97.5 7.5E-05 2.6E-09 62.6 3.9 46 2-47 25-73 (334)
88 1n0w_A DNA repair protein RAD5 97.5 0.0004 1.4E-08 54.9 8.0 93 24-119 23-130 (243)
89 1v5w_A DMC1, meiotic recombina 97.5 0.00098 3.4E-08 56.0 10.7 93 23-118 120-229 (343)
90 1ypw_A Transitional endoplasmi 97.4 6.6E-05 2.2E-09 70.3 3.6 45 3-47 205-260 (806)
91 3c8u_A Fructokinase; YP_612366 97.4 0.00013 4.5E-09 56.7 4.8 39 9-47 6-44 (208)
92 1rz3_A Hypothetical protein rb 97.4 0.0002 6.8E-09 55.4 5.6 42 6-47 2-44 (201)
93 2z43_A DNA repair and recombin 97.4 0.0007 2.4E-08 56.4 9.3 92 24-118 106-213 (324)
94 1u94_A RECA protein, recombina 97.4 0.0005 1.7E-08 58.1 8.3 86 24-118 62-151 (356)
95 2r44_A Uncharacterized protein 97.4 9.8E-05 3.4E-09 61.6 3.9 42 2-47 27-68 (331)
96 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00025 8.7E-09 65.9 6.6 46 2-47 458-510 (758)
97 3hws_A ATP-dependent CLP prote 97.3 0.00019 6.4E-09 60.8 5.0 45 3-47 16-73 (363)
98 2x8a_A Nuclear valosin-contain 97.3 0.0007 2.4E-08 55.1 8.1 45 3-47 11-66 (274)
99 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.00025 8.6E-09 62.6 5.2 42 2-47 22-63 (500)
100 2i1q_A DNA repair and recombin 97.3 0.001 3.5E-08 55.3 8.6 92 24-118 97-214 (322)
101 1qhx_A CPT, protein (chloramph 97.2 0.00019 6.4E-09 54.1 3.1 22 26-47 4-25 (178)
102 2orw_A Thymidine kinase; TMTK, 97.1 7.7E-05 2.6E-09 57.1 0.4 22 26-47 4-25 (184)
103 1um8_A ATP-dependent CLP prote 97.1 0.00038 1.3E-08 59.2 4.4 46 2-47 21-94 (376)
104 1odf_A YGR205W, hypothetical 3 97.1 0.00067 2.3E-08 55.7 5.6 26 22-47 28-53 (290)
105 3jvv_A Twitching mobility prot 97.0 0.0031 1.1E-07 53.2 9.4 106 25-149 123-234 (356)
106 3tlx_A Adenylate kinase 2; str 97.0 0.00055 1.9E-08 54.6 4.5 42 6-47 10-51 (243)
107 3kb2_A SPBC2 prophage-derived 97.0 0.0003 1E-08 52.5 2.8 22 26-47 2-23 (173)
108 1g8p_A Magnesium-chelatase 38 97.0 0.00028 9.6E-09 59.0 2.8 43 3-47 25-67 (350)
109 3bh0_A DNAB-like replicative h 97.0 0.0038 1.3E-07 51.7 9.6 52 24-79 67-118 (315)
110 1ly1_A Polynucleotide kinase; 97.0 0.00039 1.3E-08 52.2 3.2 22 26-47 3-24 (181)
111 1zp6_A Hypothetical protein AT 97.0 0.00048 1.6E-08 52.4 3.8 24 24-47 8-31 (191)
112 3lw7_A Adenylate kinase relate 97.0 0.0004 1.4E-08 51.7 3.2 20 26-45 2-21 (179)
113 2px0_A Flagellar biosynthesis 97.0 0.002 6.9E-08 53.0 7.6 86 24-117 104-191 (296)
114 1gvn_B Zeta; postsegregational 97.0 0.00093 3.2E-08 54.7 5.3 24 24-47 32-55 (287)
115 3vaa_A Shikimate kinase, SK; s 96.9 0.00043 1.5E-08 53.3 3.1 24 24-47 24-47 (199)
116 1ixz_A ATP-dependent metallopr 96.9 0.00041 1.4E-08 55.5 3.0 45 3-47 17-71 (254)
117 3dm5_A SRP54, signal recogniti 96.9 0.011 3.8E-07 51.2 12.0 24 24-47 99-122 (443)
118 3trf_A Shikimate kinase, SK; a 96.9 0.00047 1.6E-08 52.2 2.9 23 25-47 5-27 (185)
119 3tqc_A Pantothenate kinase; bi 96.9 0.0012 3.9E-08 55.0 5.4 42 6-47 71-114 (321)
120 1vma_A Cell division protein F 96.9 0.005 1.7E-07 50.9 9.1 90 24-118 103-196 (306)
121 4a1f_A DNAB helicase, replicat 96.9 0.0031 1.1E-07 52.8 7.9 51 24-78 45-95 (338)
122 1kgd_A CASK, peripheral plasma 96.9 0.00065 2.2E-08 51.5 3.4 23 25-47 5-27 (180)
123 3uie_A Adenylyl-sulfate kinase 96.9 0.00073 2.5E-08 52.1 3.7 24 24-47 24-47 (200)
124 1knq_A Gluconate kinase; ALFA/ 96.8 0.00092 3.2E-08 50.1 4.1 24 24-47 7-30 (175)
125 2rhm_A Putative kinase; P-loop 96.8 0.00066 2.3E-08 51.6 3.3 24 24-47 4-27 (193)
126 1iy2_A ATP-dependent metallopr 96.8 0.0006 2.1E-08 55.4 3.1 45 3-47 41-95 (278)
127 1g41_A Heat shock protein HSLU 96.8 0.00076 2.6E-08 58.5 3.7 46 2-47 15-72 (444)
128 1kag_A SKI, shikimate kinase I 96.8 0.00057 2E-08 51.1 2.6 22 26-47 5-26 (173)
129 1pzn_A RAD51, DNA repair and r 96.8 0.0036 1.2E-07 52.7 7.7 94 24-120 130-243 (349)
130 1ex7_A Guanylate kinase; subst 96.8 0.00049 1.7E-08 52.7 2.1 22 26-47 2-23 (186)
131 3tau_A Guanylate kinase, GMP k 96.8 0.00085 2.9E-08 52.1 3.6 24 24-47 7-30 (208)
132 3lda_A DNA repair protein RAD5 96.8 0.0044 1.5E-07 53.1 8.2 92 24-118 177-283 (400)
133 3cmu_A Protein RECA, recombina 96.8 0.0036 1.2E-07 63.3 8.7 86 24-118 1426-1515(2050)
134 3t61_A Gluconokinase; PSI-biol 96.8 0.00053 1.8E-08 52.8 2.3 23 25-47 18-40 (202)
135 3tr0_A Guanylate kinase, GMP k 96.8 0.00091 3.1E-08 51.4 3.6 23 25-47 7-29 (205)
136 1nks_A Adenylate kinase; therm 96.8 0.00075 2.6E-08 51.2 3.0 22 26-47 2-23 (194)
137 4eun_A Thermoresistant glucoki 96.7 0.00089 3.1E-08 51.6 3.4 24 24-47 28-51 (200)
138 1q57_A DNA primase/helicase; d 96.7 0.0088 3E-07 52.8 10.2 51 24-78 241-292 (503)
139 1kht_A Adenylate kinase; phosp 96.7 0.00078 2.7E-08 51.1 3.0 22 26-47 4-25 (192)
140 2plr_A DTMP kinase, probable t 96.7 0.0022 7.4E-08 49.4 5.6 23 25-47 4-26 (213)
141 1tev_A UMP-CMP kinase; ploop, 96.7 0.00087 3E-08 50.9 3.2 23 25-47 3-25 (196)
142 1j8m_F SRP54, signal recogniti 96.7 0.0084 2.9E-07 49.3 9.3 38 25-64 98-135 (297)
143 1uj2_A Uridine-cytidine kinase 96.7 0.00087 3E-08 53.6 3.3 24 24-47 21-44 (252)
144 2p5t_B PEZT; postsegregational 96.7 0.0014 4.8E-08 52.5 4.6 25 23-47 30-54 (253)
145 3kl4_A SRP54, signal recogniti 96.7 0.0056 1.9E-07 53.0 8.6 24 24-47 96-119 (433)
146 2qt1_A Nicotinamide riboside k 96.7 0.0011 3.8E-08 51.2 3.7 24 24-47 20-43 (207)
147 2qor_A Guanylate kinase; phosp 96.7 0.00071 2.4E-08 52.3 2.6 24 24-47 11-34 (204)
148 3iij_A Coilin-interacting nucl 96.7 0.00071 2.4E-08 51.1 2.5 23 25-47 11-33 (180)
149 3asz_A Uridine kinase; cytidin 96.7 0.001 3.5E-08 51.5 3.5 24 24-47 5-28 (211)
150 3e70_C DPA, signal recognition 96.7 0.0086 3E-07 49.9 9.3 24 24-47 128-151 (328)
151 2j41_A Guanylate kinase; GMP, 96.7 0.0011 3.7E-08 51.0 3.5 23 25-47 6-28 (207)
152 1uf9_A TT1252 protein; P-loop, 96.7 0.0011 3.6E-08 50.9 3.4 24 24-47 7-30 (203)
153 1zuh_A Shikimate kinase; alpha 96.7 0.00087 3E-08 50.0 2.8 24 24-47 6-29 (168)
154 4gp7_A Metallophosphoesterase; 96.7 0.0012 3.9E-08 49.7 3.5 23 25-47 9-31 (171)
155 1ukz_A Uridylate kinase; trans 96.7 0.0011 3.8E-08 51.0 3.4 24 24-47 14-37 (203)
156 3a00_A Guanylate kinase, GMP k 96.7 0.00082 2.8E-08 51.2 2.6 22 26-47 2-23 (186)
157 2z0h_A DTMP kinase, thymidylat 96.7 0.0023 8E-08 48.7 5.2 21 27-47 2-22 (197)
158 1y63_A LMAJ004144AAA protein; 96.6 0.0011 3.6E-08 50.4 3.2 24 24-47 9-32 (184)
159 2c95_A Adenylate kinase 1; tra 96.6 0.001 3.5E-08 50.7 3.1 23 25-47 9-31 (196)
160 3k1j_A LON protease, ATP-depen 96.6 0.0023 7.9E-08 57.9 5.8 41 3-47 42-82 (604)
161 2ze6_A Isopentenyl transferase 96.6 0.001 3.6E-08 53.3 3.2 22 26-47 2-23 (253)
162 2vli_A Antibiotic resistance p 96.6 0.00072 2.5E-08 51.0 2.1 23 25-47 5-27 (183)
163 2hf9_A Probable hydrogenase ni 96.6 0.0022 7.5E-08 50.0 4.9 35 11-47 26-60 (226)
164 3cm0_A Adenylate kinase; ATP-b 96.6 0.0012 4.2E-08 49.9 3.3 23 25-47 4-26 (186)
165 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0012 4.3E-08 53.1 3.4 23 25-47 4-26 (260)
166 2bdt_A BH3686; alpha-beta prot 96.6 0.0013 4.5E-08 49.9 3.4 22 26-47 3-24 (189)
167 2bwj_A Adenylate kinase 5; pho 96.6 0.0011 3.9E-08 50.6 2.9 23 25-47 12-34 (199)
168 3fwy_A Light-independent proto 96.6 0.0023 7.7E-08 53.1 4.8 40 24-65 47-86 (314)
169 1jjv_A Dephospho-COA kinase; P 96.6 0.0014 4.9E-08 50.5 3.5 22 26-47 3-24 (206)
170 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4.1E-08 50.6 3.0 21 27-47 2-22 (205)
171 2pbr_A DTMP kinase, thymidylat 96.5 0.0033 1.1E-07 47.6 5.4 21 27-47 2-22 (195)
172 1cke_A CK, MSSA, protein (cyti 96.5 0.0012 4.2E-08 51.6 3.0 22 26-47 6-27 (227)
173 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0018 6.1E-08 54.5 4.1 43 5-47 2-46 (359)
174 1via_A Shikimate kinase; struc 96.5 0.00089 3E-08 50.3 2.0 22 26-47 5-26 (175)
175 2cdn_A Adenylate kinase; phosp 96.5 0.0016 5.5E-08 50.0 3.5 24 24-47 19-42 (201)
176 2xxa_A Signal recognition part 96.5 0.02 6.7E-07 49.6 10.7 37 11-47 79-122 (433)
177 1qf9_A UMP/CMP kinase, protein 96.5 0.0013 4.6E-08 49.8 3.1 23 25-47 6-28 (194)
178 1lvg_A Guanylate kinase, GMP k 96.5 0.0012 4E-08 50.9 2.6 23 25-47 4-26 (198)
179 1e6c_A Shikimate kinase; phosp 96.5 0.0011 3.7E-08 49.5 2.3 22 26-47 3-24 (173)
180 3cf2_A TER ATPase, transitiona 96.5 0.00096 3.3E-08 62.1 2.4 92 3-118 478-580 (806)
181 2if2_A Dephospho-COA kinase; a 96.5 0.0013 4.4E-08 50.7 2.8 22 26-47 2-23 (204)
182 2iyv_A Shikimate kinase, SK; t 96.5 0.00097 3.3E-08 50.5 2.0 22 26-47 3-24 (184)
183 3ney_A 55 kDa erythrocyte memb 96.5 0.0015 5.1E-08 50.4 3.1 24 24-47 18-41 (197)
184 2yvu_A Probable adenylyl-sulfa 96.5 0.0018 6E-08 49.2 3.5 24 24-47 12-35 (186)
185 3p32_A Probable GTPase RV1496/ 96.5 0.0035 1.2E-07 52.9 5.6 37 11-47 65-101 (355)
186 2bbw_A Adenylate kinase 4, AK4 96.5 0.0016 5.6E-08 51.8 3.4 23 25-47 27-49 (246)
187 2wsm_A Hydrogenase expression/ 96.5 0.0023 7.9E-08 49.7 4.2 37 9-47 16-52 (221)
188 1nn5_A Similar to deoxythymidy 96.5 0.0015 5.2E-08 50.5 3.1 23 25-47 9-31 (215)
189 2jeo_A Uridine-cytidine kinase 96.5 0.0019 6.6E-08 51.4 3.8 24 24-47 24-47 (245)
190 2wwf_A Thymidilate kinase, put 96.5 0.0014 4.9E-08 50.5 2.9 24 24-47 9-32 (212)
191 3llm_A ATP-dependent RNA helic 96.5 0.028 9.6E-07 44.2 10.5 20 26-45 77-96 (235)
192 3umf_A Adenylate kinase; rossm 96.4 0.0019 6.4E-08 50.7 3.4 25 23-47 27-51 (217)
193 3aez_A Pantothenate kinase; tr 96.4 0.002 7E-08 53.4 3.8 25 23-47 88-112 (312)
194 2pt5_A Shikimate kinase, SK; a 96.4 0.0017 5.7E-08 48.3 3.0 21 27-47 2-22 (168)
195 2r6a_A DNAB helicase, replicat 96.4 0.013 4.3E-07 51.1 8.9 50 24-77 202-252 (454)
196 2ewv_A Twitching motility prot 96.4 0.012 4.1E-07 49.9 8.5 106 24-147 135-245 (372)
197 4a74_A DNA repair and recombin 96.4 0.0084 2.9E-07 46.6 7.1 57 24-81 24-84 (231)
198 3ice_A Transcription terminati 96.4 0.0038 1.3E-07 53.1 5.2 42 24-67 173-216 (422)
199 2v54_A DTMP kinase, thymidylat 96.4 0.002 6.7E-08 49.5 3.3 23 25-47 4-26 (204)
200 1zd8_A GTP:AMP phosphotransfer 96.4 0.0016 5.6E-08 51.1 2.9 23 25-47 7-29 (227)
201 1ye8_A Protein THEP1, hypothet 96.4 0.002 6.9E-08 48.8 3.2 21 27-47 2-22 (178)
202 3cmu_A Protein RECA, recombina 96.4 0.0091 3.1E-07 60.5 8.7 86 24-118 382-471 (2050)
203 1znw_A Guanylate kinase, GMP k 96.4 0.0021 7.2E-08 49.7 3.4 23 25-47 20-42 (207)
204 1aky_A Adenylate kinase; ATP:A 96.4 0.0019 6.5E-08 50.4 3.1 23 25-47 4-26 (220)
205 2f6r_A COA synthase, bifunctio 96.4 0.0022 7.7E-08 52.2 3.6 24 24-47 74-97 (281)
206 1tue_A Replication protein E1; 96.4 0.0031 1.1E-07 48.9 4.2 36 11-47 45-80 (212)
207 2ck3_D ATP synthase subunit be 96.4 0.0099 3.4E-07 51.8 7.8 53 25-79 153-207 (482)
208 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0061 2.1E-07 53.2 6.4 50 26-77 152-203 (473)
209 2q6t_A DNAB replication FORK h 96.4 0.03 1E-06 48.6 10.9 52 24-79 199-251 (444)
210 2grj_A Dephospho-COA kinase; T 96.4 0.002 7E-08 49.5 3.1 24 24-47 11-34 (192)
211 2ffh_A Protein (FFH); SRP54, s 96.4 0.0099 3.4E-07 51.3 7.7 24 24-47 97-120 (425)
212 1sq5_A Pantothenate kinase; P- 96.4 0.0051 1.7E-07 50.8 5.7 24 24-47 79-102 (308)
213 1z6g_A Guanylate kinase; struc 96.3 0.0018 6.2E-08 50.7 2.8 23 25-47 23-45 (218)
214 3fb4_A Adenylate kinase; psych 96.3 0.0019 6.6E-08 50.1 2.9 21 27-47 2-22 (216)
215 1vht_A Dephospho-COA kinase; s 96.3 0.0028 9.5E-08 49.3 3.8 23 25-47 4-26 (218)
216 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.018 6.3E-07 47.9 9.0 101 26-146 172-275 (330)
217 1s96_A Guanylate kinase, GMP k 96.3 0.0024 8.2E-08 50.1 3.4 24 24-47 15-38 (219)
218 1zak_A Adenylate kinase; ATP:A 96.3 0.0017 5.8E-08 50.8 2.5 24 24-47 4-27 (222)
219 1zu4_A FTSY; GTPase, signal re 96.3 0.0068 2.3E-07 50.4 6.3 38 24-63 104-141 (320)
220 1xjc_A MOBB protein homolog; s 96.3 0.0023 7.7E-08 48.2 3.0 24 24-47 3-26 (169)
221 2pez_A Bifunctional 3'-phospho 96.3 0.0026 8.9E-08 47.9 3.4 24 24-47 4-27 (179)
222 4e22_A Cytidylate kinase; P-lo 96.3 0.0026 8.8E-08 51.0 3.5 24 24-47 26-49 (252)
223 3dl0_A Adenylate kinase; phosp 96.3 0.0022 7.5E-08 49.8 2.9 21 27-47 2-22 (216)
224 3cmw_A Protein RECA, recombina 96.3 0.0087 3E-07 59.9 7.6 87 24-119 382-472 (1706)
225 1m7g_A Adenylylsulfate kinase; 96.2 0.0029 9.9E-08 49.1 3.4 24 24-47 24-47 (211)
226 2dr3_A UPF0273 protein PH0284; 96.2 0.0037 1.3E-07 49.3 4.0 48 24-75 22-69 (247)
227 1htw_A HI0065; nucleotide-bind 96.2 0.0036 1.2E-07 46.5 3.7 24 24-47 32-55 (158)
228 1gtv_A TMK, thymidylate kinase 96.2 0.0012 4E-08 51.2 1.0 21 27-47 2-22 (214)
229 3e1s_A Exodeoxyribonuclease V, 96.2 0.013 4.5E-07 52.6 7.8 22 26-47 205-226 (574)
230 1fx0_B ATP synthase beta chain 96.2 0.023 7.8E-07 49.8 8.9 53 25-79 165-219 (498)
231 4eaq_A DTMP kinase, thymidylat 96.1 0.0061 2.1E-07 48.1 5.0 24 24-47 25-48 (229)
232 3hjn_A DTMP kinase, thymidylat 96.1 0.0085 2.9E-07 46.1 5.6 50 27-78 2-51 (197)
233 1ls1_A Signal recognition part 96.1 0.016 5.5E-07 47.5 7.5 39 24-64 97-135 (295)
234 2ehv_A Hypothetical protein PH 96.1 0.0034 1.2E-07 49.6 3.4 24 24-47 29-52 (251)
235 3end_A Light-independent proto 96.1 0.0058 2E-07 50.2 4.8 41 24-66 40-80 (307)
236 1svm_A Large T antigen; AAA+ f 96.1 0.0067 2.3E-07 51.6 5.3 24 24-47 168-191 (377)
237 1a7j_A Phosphoribulokinase; tr 96.1 0.0016 5.5E-08 53.4 1.4 24 24-47 4-27 (290)
238 3lnc_A Guanylate kinase, GMP k 96.1 0.0022 7.6E-08 50.4 2.1 23 25-47 27-50 (231)
239 3b9q_A Chloroplast SRP recepto 96.1 0.0071 2.4E-07 49.8 5.2 24 24-47 99-122 (302)
240 1c9k_A COBU, adenosylcobinamid 96.1 0.0062 2.1E-07 46.2 4.4 46 28-80 2-47 (180)
241 3ake_A Cytidylate kinase; CMP 96.1 0.0032 1.1E-07 48.3 2.9 21 27-47 4-24 (208)
242 1rj9_A FTSY, signal recognitio 96.1 0.0037 1.3E-07 51.6 3.4 24 24-47 101-124 (304)
243 3a8t_A Adenylate isopentenyltr 96.0 0.0041 1.4E-07 52.0 3.6 23 25-47 40-62 (339)
244 1ltq_A Polynucleotide kinase; 96.0 0.0036 1.2E-07 51.2 3.2 22 26-47 3-24 (301)
245 3b85_A Phosphate starvation-in 96.0 0.0059 2E-07 47.4 4.3 22 26-47 23-44 (208)
246 3nwj_A ATSK2; P loop, shikimat 96.0 0.0025 8.7E-08 51.0 2.2 22 26-47 49-70 (250)
247 4edh_A DTMP kinase, thymidylat 96.0 0.012 4.2E-07 45.8 6.0 23 25-47 6-28 (213)
248 1ak2_A Adenylate kinase isoenz 96.0 0.0042 1.4E-07 49.0 3.3 24 24-47 15-38 (233)
249 1u0j_A DNA replication protein 96.0 0.0079 2.7E-07 48.5 4.9 34 14-47 93-126 (267)
250 3zvl_A Bifunctional polynucleo 96.0 0.0041 1.4E-07 53.6 3.5 24 24-47 257-280 (416)
251 3tif_A Uncharacterized ABC tra 96.0 0.0046 1.6E-07 49.0 3.5 24 24-47 30-53 (235)
252 1cr0_A DNA primase/helicase; R 95.9 0.014 4.8E-07 47.6 6.4 39 24-64 34-73 (296)
253 2xb4_A Adenylate kinase; ATP-b 95.9 0.004 1.4E-07 48.8 3.0 21 27-47 2-22 (223)
254 3d3q_A TRNA delta(2)-isopenten 95.9 0.004 1.4E-07 52.1 3.1 22 26-47 8-29 (340)
255 3r20_A Cytidylate kinase; stru 95.9 0.0041 1.4E-07 49.3 3.0 23 25-47 9-31 (233)
256 2f1r_A Molybdopterin-guanine d 95.9 0.0022 7.6E-08 48.3 1.4 22 26-47 3-24 (171)
257 1e4v_A Adenylate kinase; trans 95.9 0.0038 1.3E-07 48.5 2.8 21 27-47 2-22 (214)
258 1np6_A Molybdopterin-guanine d 95.9 0.0044 1.5E-07 46.8 3.0 23 25-47 6-28 (174)
259 3f9v_A Minichromosome maintena 95.9 0.0029 9.9E-08 57.1 2.2 46 2-47 295-349 (595)
260 3be4_A Adenylate kinase; malar 95.9 0.0041 1.4E-07 48.4 2.8 23 25-47 5-27 (217)
261 2og2_A Putative signal recogni 95.9 0.01 3.5E-07 50.1 5.4 24 24-47 156-179 (359)
262 3cmw_A Protein RECA, recombina 95.9 0.014 4.7E-07 58.5 7.0 86 24-118 1430-1519(1706)
263 2onk_A Molybdate/tungstate ABC 95.9 0.0052 1.8E-07 48.9 3.4 22 26-47 25-46 (240)
264 3exa_A TRNA delta(2)-isopenten 95.8 0.0053 1.8E-07 50.8 3.4 23 25-47 3-25 (322)
265 2eyu_A Twitching motility prot 95.8 0.0063 2.2E-07 49.0 3.8 111 24-148 24-135 (261)
266 2qmh_A HPR kinase/phosphorylas 95.8 0.0059 2E-07 47.1 3.4 23 25-47 34-56 (205)
267 2j37_W Signal recognition part 95.8 0.063 2.2E-06 47.4 10.4 24 24-47 100-123 (504)
268 1g8f_A Sulfate adenylyltransfe 95.8 0.0066 2.3E-07 53.7 4.1 44 4-47 374-417 (511)
269 2cbz_A Multidrug resistance-as 95.8 0.0061 2.1E-07 48.4 3.5 24 24-47 30-53 (237)
270 3sr0_A Adenylate kinase; phosp 95.8 0.005 1.7E-07 47.8 2.9 81 27-126 2-93 (206)
271 2pcj_A ABC transporter, lipopr 95.8 0.0052 1.8E-07 48.3 3.0 23 25-47 30-52 (224)
272 3l0o_A Transcription terminati 95.8 0.0094 3.2E-07 50.7 4.7 34 13-47 164-197 (427)
273 3crm_A TRNA delta(2)-isopenten 95.8 0.0054 1.8E-07 51.0 3.2 23 25-47 5-27 (323)
274 3iqw_A Tail-anchored protein t 95.8 0.013 4.5E-07 48.9 5.6 24 24-47 15-38 (334)
275 1b0u_A Histidine permease; ABC 95.8 0.0063 2.2E-07 49.0 3.5 24 24-47 31-54 (262)
276 2i3b_A HCR-ntpase, human cance 95.8 0.0048 1.7E-07 47.2 2.7 22 26-47 2-23 (189)
277 1mv5_A LMRA, multidrug resista 95.7 0.0073 2.5E-07 48.1 3.8 24 24-47 27-50 (243)
278 3io3_A DEHA2D07832P; chaperone 95.7 0.013 4.3E-07 49.3 5.3 24 24-47 17-40 (348)
279 3foz_A TRNA delta(2)-isopenten 95.7 0.0063 2.2E-07 50.2 3.2 24 24-47 9-32 (316)
280 2yhs_A FTSY, cell division pro 95.7 0.014 4.6E-07 51.4 5.5 24 24-47 292-315 (503)
281 2olj_A Amino acid ABC transpor 95.7 0.0073 2.5E-07 48.7 3.5 24 24-47 49-72 (263)
282 1yrb_A ATP(GTP)binding protein 95.7 0.0076 2.6E-07 48.0 3.6 24 24-47 13-36 (262)
283 2ged_A SR-beta, signal recogni 95.7 0.0081 2.8E-07 45.3 3.6 25 24-48 47-71 (193)
284 2vp4_A Deoxynucleoside kinase; 95.6 0.0063 2.2E-07 47.9 3.0 24 24-47 19-42 (230)
285 2zej_A Dardarin, leucine-rich 95.6 0.0067 2.3E-07 45.6 3.1 22 27-48 4-25 (184)
286 3gfo_A Cobalt import ATP-bindi 95.6 0.0067 2.3E-07 49.3 3.2 23 25-47 34-56 (275)
287 2v9p_A Replication protein E1; 95.6 0.012 4E-07 48.6 4.7 24 24-47 125-148 (305)
288 1cp2_A CP2, nitrogenase iron p 95.6 0.013 4.4E-07 46.9 4.9 38 26-65 2-39 (269)
289 4g1u_C Hemin import ATP-bindin 95.6 0.0067 2.3E-07 49.0 3.2 23 25-47 37-59 (266)
290 2wji_A Ferrous iron transport 95.6 0.0087 3E-07 44.1 3.6 23 26-48 4-26 (165)
291 2ghi_A Transport protein; mult 95.6 0.0076 2.6E-07 48.5 3.5 24 24-47 45-68 (260)
292 3ld9_A DTMP kinase, thymidylat 95.6 0.015 5.3E-07 45.6 5.1 53 24-78 20-74 (223)
293 2afh_E Nitrogenase iron protei 95.6 0.012 4.3E-07 47.7 4.8 40 25-66 2-41 (289)
294 2ocp_A DGK, deoxyguanosine kin 95.6 0.0073 2.5E-07 47.8 3.3 23 25-47 2-24 (241)
295 1fzq_A ADP-ribosylation factor 95.6 0.011 3.8E-07 44.3 4.1 25 24-48 15-39 (181)
296 1vpl_A ABC transporter, ATP-bi 95.6 0.0082 2.8E-07 48.2 3.5 24 24-47 40-63 (256)
297 2j9r_A Thymidine kinase; TK1, 95.6 0.03 1E-06 43.6 6.6 111 24-147 27-139 (214)
298 3v9p_A DTMP kinase, thymidylat 95.6 0.012 4.2E-07 46.3 4.4 28 24-53 24-51 (227)
299 2zu0_C Probable ATP-dependent 95.6 0.0084 2.9E-07 48.5 3.5 24 24-47 45-68 (267)
300 2ixe_A Antigen peptide transpo 95.6 0.0081 2.8E-07 48.7 3.5 24 24-47 44-67 (271)
301 1g6h_A High-affinity branched- 95.5 0.0073 2.5E-07 48.5 3.1 24 24-47 32-55 (257)
302 2pze_A Cystic fibrosis transme 95.5 0.0082 2.8E-07 47.3 3.4 23 25-47 34-56 (229)
303 4b3f_X DNA-binding protein smu 95.5 0.016 5.4E-07 52.8 5.7 62 10-78 194-255 (646)
304 1ji0_A ABC transporter; ATP bi 95.5 0.008 2.7E-07 47.7 3.3 23 25-47 32-54 (240)
305 1tq4_A IIGP1, interferon-induc 95.5 0.0079 2.7E-07 51.7 3.4 24 24-47 68-91 (413)
306 2ff7_A Alpha-hemolysin translo 95.5 0.0082 2.8E-07 47.9 3.3 23 25-47 35-57 (247)
307 2qm8_A GTPase/ATPase; G protei 95.5 0.016 5.4E-07 48.5 5.1 34 14-47 44-77 (337)
308 1q3t_A Cytidylate kinase; nucl 95.5 0.0089 3.1E-07 47.1 3.5 24 24-47 15-38 (236)
309 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0079 2.7E-07 48.1 3.1 23 25-47 29-51 (250)
310 1nlf_A Regulatory protein REPA 95.5 0.0077 2.6E-07 48.8 3.1 24 24-47 29-52 (279)
311 3lv8_A DTMP kinase, thymidylat 95.5 0.019 6.4E-07 45.5 5.3 37 24-62 26-63 (236)
312 2yz2_A Putative ABC transporte 95.5 0.0089 3E-07 48.3 3.5 24 24-47 32-55 (266)
313 1sgw_A Putative ABC transporte 95.5 0.0073 2.5E-07 47.2 2.8 23 25-47 35-57 (214)
314 4tmk_A Protein (thymidylate ki 95.5 0.02 6.9E-07 44.6 5.3 51 26-78 4-55 (213)
315 3ug7_A Arsenical pump-driving 95.5 0.022 7.5E-07 47.8 5.9 24 24-47 25-48 (349)
316 3kjh_A CO dehydrogenase/acetyl 95.5 0.014 4.8E-07 45.9 4.5 41 28-70 3-43 (254)
317 2lkc_A Translation initiation 95.5 0.014 4.7E-07 43.2 4.2 25 24-48 7-31 (178)
318 1oix_A RAS-related protein RAB 95.4 0.0088 3E-07 45.4 3.1 24 25-48 29-52 (191)
319 3zq6_A Putative arsenical pump 95.4 0.021 7.2E-07 47.4 5.6 23 25-47 14-36 (324)
320 2qe7_A ATP synthase subunit al 95.4 0.016 5.4E-07 50.8 4.9 50 25-78 162-214 (502)
321 3oaa_A ATP synthase subunit al 95.4 0.033 1.1E-06 48.8 6.9 86 25-118 162-264 (513)
322 2p67_A LAO/AO transport system 95.4 0.021 7E-07 47.8 5.5 34 14-47 45-78 (341)
323 3cr8_A Sulfate adenylyltranfer 95.4 0.01 3.5E-07 53.0 3.7 24 24-47 368-391 (552)
324 2qi9_C Vitamin B12 import ATP- 95.4 0.014 4.9E-07 46.6 4.3 23 25-47 26-48 (249)
325 2r8r_A Sensor protein; KDPD, P 95.4 0.023 7.7E-07 44.7 5.3 39 26-66 7-45 (228)
326 1p5z_B DCK, deoxycytidine kina 95.4 0.0068 2.3E-07 48.7 2.4 24 24-47 23-46 (263)
327 2wjg_A FEOB, ferrous iron tran 95.4 0.012 4E-07 44.2 3.6 24 25-48 7-30 (188)
328 2nq2_C Hypothetical ABC transp 95.4 0.01 3.5E-07 47.6 3.3 23 25-47 31-53 (253)
329 2dyk_A GTP-binding protein; GT 95.4 0.012 4.1E-07 42.7 3.5 23 26-48 2-24 (161)
330 3def_A T7I23.11 protein; chlor 95.3 0.023 7.7E-07 45.6 5.4 37 12-48 23-59 (262)
331 1h65_A Chloroplast outer envel 95.3 0.022 7.5E-07 45.8 5.4 36 13-48 27-62 (270)
332 2r9v_A ATP synthase subunit al 95.3 0.016 5.6E-07 50.8 4.8 50 25-78 175-227 (515)
333 2ihy_A ABC transporter, ATP-bi 95.3 0.01 3.4E-07 48.4 3.2 23 25-47 47-69 (279)
334 2f9l_A RAB11B, member RAS onco 95.3 0.0095 3.3E-07 45.4 2.9 24 25-48 5-28 (199)
335 2yv5_A YJEQ protein; hydrolase 95.3 0.016 5.5E-07 47.6 4.5 21 26-46 166-186 (302)
336 3mfy_A V-type ATP synthase alp 95.3 0.03 1E-06 49.7 6.3 48 25-76 227-275 (588)
337 3nh6_A ATP-binding cassette SU 95.3 0.0085 2.9E-07 49.4 2.8 24 24-47 79-102 (306)
338 3eph_A TRNA isopentenyltransfe 95.2 0.011 3.6E-07 50.7 3.3 23 25-47 2-24 (409)
339 1nij_A Hypothetical protein YJ 95.2 0.0096 3.3E-07 49.3 3.0 24 24-47 3-26 (318)
340 3thx_A DNA mismatch repair pro 95.2 0.074 2.5E-06 50.4 9.2 22 24-45 661-682 (934)
341 3fkq_A NTRC-like two-domain pr 95.2 0.037 1.3E-06 46.8 6.6 40 23-64 141-181 (373)
342 2v3c_C SRP54, signal recogniti 95.2 0.014 4.8E-07 50.5 4.0 23 25-47 99-121 (432)
343 3bgw_A DNAB-like replicative h 95.2 0.027 9.3E-07 48.9 5.8 51 24-78 196-246 (444)
344 2xau_A PRE-mRNA-splicing facto 95.2 0.11 3.9E-06 48.3 10.2 33 10-46 98-130 (773)
345 2orv_A Thymidine kinase; TP4A 95.2 0.055 1.9E-06 42.6 6.9 107 25-147 19-127 (234)
346 2f7s_A C25KG, RAS-related prot 95.1 0.093 3.2E-06 40.2 8.2 25 24-48 24-48 (217)
347 4hlc_A DTMP kinase, thymidylat 95.1 0.017 5.8E-07 44.7 3.8 29 26-56 3-31 (205)
348 2gks_A Bifunctional SAT/APS ki 95.1 0.018 6.2E-07 51.4 4.4 41 7-47 354-394 (546)
349 4dzz_A Plasmid partitioning pr 95.1 0.021 7.1E-07 43.6 4.3 43 26-70 2-45 (206)
350 3vr4_D V-type sodium ATPase su 95.1 0.017 5.7E-07 50.2 4.0 51 26-78 152-207 (465)
351 2pjz_A Hypothetical protein ST 95.1 0.013 4.5E-07 47.2 3.2 23 25-47 30-52 (263)
352 2ce2_X GTPase HRAS; signaling 95.1 0.012 4.2E-07 42.7 2.8 22 27-48 5-26 (166)
353 3sop_A Neuronal-specific septi 95.1 0.012 4.2E-07 47.5 3.1 21 27-47 4-24 (270)
354 2nzj_A GTP-binding protein REM 95.1 0.018 6.2E-07 42.4 3.8 24 25-48 4-27 (175)
355 1z2a_A RAS-related protein RAB 95.1 0.013 4.5E-07 42.8 2.9 24 25-48 5-28 (168)
356 1m8p_A Sulfate adenylyltransfe 95.1 0.019 6.5E-07 51.6 4.5 24 24-47 395-418 (573)
357 2bbs_A Cystic fibrosis transme 95.1 0.014 4.8E-07 47.8 3.3 24 24-47 63-86 (290)
358 2axn_A 6-phosphofructo-2-kinas 95.0 0.014 4.8E-07 51.8 3.5 24 24-47 34-57 (520)
359 3q72_A GTP-binding protein RAD 95.0 0.012 4.2E-07 42.9 2.8 21 27-47 4-24 (166)
360 1ypw_A Transitional endoplasmi 95.0 0.0064 2.2E-07 56.9 1.4 45 3-47 478-533 (806)
361 3tqf_A HPR(Ser) kinase; transf 95.0 0.014 4.8E-07 43.9 3.0 23 25-47 16-38 (181)
362 3fvq_A Fe(3+) IONS import ATP- 95.0 0.014 4.8E-07 49.2 3.3 23 25-47 30-52 (359)
363 1p9r_A General secretion pathw 95.0 0.043 1.5E-06 47.3 6.4 24 24-47 166-189 (418)
364 3upu_A ATP-dependent DNA helic 95.0 0.028 9.4E-07 49.0 5.3 22 26-47 46-67 (459)
365 2h92_A Cytidylate kinase; ross 95.0 0.011 3.7E-07 45.9 2.4 22 26-47 4-25 (219)
366 1z08_A RAS-related protein RAB 95.0 0.017 5.9E-07 42.3 3.4 24 25-48 6-29 (170)
367 1u0l_A Probable GTPase ENGC; p 95.0 0.024 8.3E-07 46.5 4.6 22 26-47 170-191 (301)
368 2gk6_A Regulator of nonsense t 95.0 0.037 1.3E-06 50.2 6.2 50 26-77 196-245 (624)
369 1zj6_A ADP-ribosylation factor 94.9 0.033 1.1E-06 41.7 5.0 34 12-48 6-39 (187)
370 1nrj_B SR-beta, signal recogni 94.9 0.016 5.4E-07 44.7 3.2 25 24-48 11-35 (218)
371 1svi_A GTP-binding protein YSX 94.9 0.016 5.6E-07 43.6 3.2 25 24-48 22-46 (195)
372 3con_A GTPase NRAS; structural 94.9 0.015 5.1E-07 43.7 2.9 23 26-48 22-44 (190)
373 3tui_C Methionine import ATP-b 94.9 0.017 5.8E-07 48.8 3.5 24 24-47 53-76 (366)
374 1lw7_A Transcriptional regulat 94.9 0.015 5.2E-07 49.0 3.3 23 25-47 170-192 (365)
375 3q85_A GTP-binding protein REM 94.9 0.02 6.9E-07 41.9 3.6 22 26-47 3-24 (169)
376 3tw8_B RAS-related protein RAB 94.9 0.018 6E-07 42.7 3.3 25 24-48 8-32 (181)
377 1pui_A ENGB, probable GTP-bind 94.9 0.011 3.8E-07 45.2 2.2 25 24-48 25-49 (210)
378 3kta_A Chromosome segregation 94.9 0.017 5.9E-07 43.3 3.2 22 26-47 27-48 (182)
379 1fx0_A ATP synthase alpha chai 94.9 0.014 4.9E-07 51.1 3.1 48 25-76 163-213 (507)
380 2erx_A GTP-binding protein DI- 94.9 0.021 7.1E-07 41.8 3.6 23 26-48 4-26 (172)
381 1kao_A RAP2A; GTP-binding prot 94.9 0.015 5E-07 42.4 2.7 23 26-48 4-26 (167)
382 1u8z_A RAS-related protein RAL 94.9 0.016 5.5E-07 42.2 2.9 23 26-48 5-27 (168)
383 1f6b_A SAR1; gtpases, N-termin 94.9 0.028 9.5E-07 42.8 4.4 33 14-47 15-47 (198)
384 2gj8_A MNME, tRNA modification 94.8 0.02 6.7E-07 42.6 3.4 23 26-48 5-27 (172)
385 3fdi_A Uncharacterized protein 94.8 0.015 5.3E-07 44.8 2.9 22 26-47 7-28 (201)
386 3vr4_A V-type sodium ATPase ca 94.8 0.048 1.6E-06 48.6 6.2 39 24-66 231-269 (600)
387 3pqc_A Probable GTP-binding pr 94.8 0.018 6.2E-07 43.2 3.2 25 24-48 22-46 (195)
388 2zts_A Putative uncharacterize 94.8 0.019 6.3E-07 45.2 3.4 50 24-76 29-78 (251)
389 3rlf_A Maltose/maltodextrin im 94.8 0.019 6.4E-07 48.8 3.5 24 24-47 28-51 (381)
390 2yyz_A Sugar ABC transporter, 94.8 0.018 6.3E-07 48.5 3.5 24 24-47 28-51 (359)
391 2fn4_A P23, RAS-related protei 94.8 0.022 7.4E-07 42.1 3.6 25 24-48 8-32 (181)
392 1c1y_A RAS-related protein RAP 94.8 0.017 5.8E-07 42.1 2.9 23 26-48 4-26 (167)
393 2it1_A 362AA long hypothetical 94.8 0.019 6.5E-07 48.5 3.5 24 24-47 28-51 (362)
394 1ek0_A Protein (GTP-binding pr 94.8 0.015 5.3E-07 42.4 2.7 22 27-48 5-26 (170)
395 2hxs_A RAB-26, RAS-related pro 94.8 0.018 6.1E-07 42.6 3.0 24 25-48 6-29 (178)
396 2woo_A ATPase GET3; tail-ancho 94.8 0.036 1.2E-06 46.1 5.1 24 24-47 18-41 (329)
397 4gzl_A RAS-related C3 botulinu 94.7 0.02 6.9E-07 43.8 3.3 25 24-48 29-53 (204)
398 1z0j_A RAB-22, RAS-related pro 94.7 0.016 5.6E-07 42.4 2.7 23 26-48 7-29 (170)
399 2www_A Methylmalonic aciduria 94.7 0.022 7.4E-07 47.9 3.8 24 24-47 73-96 (349)
400 2fz4_A DNA repair protein RAD2 94.7 0.24 8.3E-06 38.9 9.7 20 28-47 111-130 (237)
401 2woj_A ATPase GET3; tail-ancho 94.7 0.047 1.6E-06 45.9 5.8 24 24-47 17-40 (354)
402 1m7b_A RND3/RHOE small GTP-bin 94.7 0.015 5.2E-07 43.6 2.5 25 24-48 6-30 (184)
403 3tmk_A Thymidylate kinase; pho 94.7 0.043 1.5E-06 42.8 5.2 23 25-47 5-27 (216)
404 2cxx_A Probable GTP-binding pr 94.7 0.016 5.6E-07 43.3 2.7 22 27-48 3-24 (190)
405 3ihw_A Centg3; RAS, centaurin, 94.7 0.016 5.6E-07 43.6 2.7 25 24-48 19-43 (184)
406 1z47_A CYSA, putative ABC-tran 94.7 0.018 6.2E-07 48.5 3.2 23 25-47 41-63 (355)
407 1v43_A Sugar-binding transport 94.7 0.02 7E-07 48.5 3.5 24 24-47 36-59 (372)
408 1moz_A ARL1, ADP-ribosylation 94.7 0.02 6.8E-07 42.6 3.2 25 24-48 17-41 (183)
409 1ky3_A GTP-binding protein YPT 94.7 0.023 8E-07 42.0 3.5 25 24-48 7-31 (182)
410 1r8s_A ADP-ribosylation factor 94.7 0.019 6.4E-07 41.8 2.9 20 28-47 3-22 (164)
411 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.019 6.6E-07 42.4 3.0 24 25-48 7-30 (177)
412 3ch4_B Pmkase, phosphomevalona 94.6 0.027 9.3E-07 43.4 3.8 24 24-47 10-33 (202)
413 1bif_A 6-phosphofructo-2-kinas 94.6 0.02 6.8E-07 50.1 3.4 24 24-47 38-61 (469)
414 4bas_A ADP-ribosylation factor 94.6 0.024 8.3E-07 42.7 3.5 25 24-48 16-40 (199)
415 1r2q_A RAS-related protein RAB 94.6 0.018 6.1E-07 42.1 2.7 22 26-47 7-28 (170)
416 3d31_A Sulfate/molybdate ABC t 94.6 0.017 5.8E-07 48.6 2.8 23 25-47 26-48 (348)
417 2qu8_A Putative nucleolar GTP- 94.6 0.028 9.5E-07 43.8 3.9 26 23-48 27-52 (228)
418 2oze_A ORF delta'; para, walke 94.6 0.036 1.2E-06 45.1 4.7 53 10-67 22-77 (298)
419 3c5c_A RAS-like protein 12; GD 94.6 0.018 6.3E-07 43.3 2.7 25 24-48 20-44 (187)
420 1g29_1 MALK, maltose transport 94.6 0.02 7E-07 48.5 3.2 23 25-47 29-51 (372)
421 2ck3_A ATP synthase subunit al 94.5 0.033 1.1E-06 48.9 4.5 54 25-78 162-222 (510)
422 1upt_A ARL1, ADP-ribosylation 94.5 0.028 9.7E-07 41.1 3.7 23 25-47 7-29 (171)
423 1ihu_A Arsenical pump-driving 94.5 0.035 1.2E-06 49.9 4.9 39 24-64 7-45 (589)
424 2gza_A Type IV secretion syste 94.5 0.017 5.9E-07 48.7 2.7 22 26-47 176-197 (361)
425 3gmt_A Adenylate kinase; ssgci 94.5 0.021 7.1E-07 45.1 3.0 23 25-47 8-30 (230)
426 2cjw_A GTP-binding protein GEM 94.5 0.021 7.2E-07 43.3 2.9 23 25-47 6-28 (192)
427 1g16_A RAS-related protein SEC 94.5 0.026 8.7E-07 41.3 3.4 24 25-48 3-26 (170)
428 3cbq_A GTP-binding protein REM 94.5 0.022 7.7E-07 43.3 3.1 24 24-47 22-45 (195)
429 1z0f_A RAB14, member RAS oncog 94.5 0.019 6.6E-07 42.3 2.7 25 24-48 14-38 (179)
430 2iwr_A Centaurin gamma 1; ANK 94.5 0.015 5.1E-07 43.2 2.0 24 25-48 7-30 (178)
431 2rcn_A Probable GTPase ENGC; Y 94.5 0.04 1.4E-06 46.4 4.8 23 26-48 216-238 (358)
432 4dsu_A GTPase KRAS, isoform 2B 94.5 0.02 6.8E-07 42.7 2.7 23 26-48 5-27 (189)
433 3ez2_A Plasmid partition prote 94.5 0.077 2.6E-06 45.2 6.7 44 23-68 106-156 (398)
434 3bc1_A RAS-related protein RAB 94.5 0.02 6.8E-07 42.9 2.7 25 24-48 10-34 (195)
435 3kkq_A RAS-related protein M-R 94.5 0.022 7.7E-07 42.3 2.9 25 24-48 17-41 (183)
436 1m2o_B GTP-binding protein SAR 94.4 0.019 6.5E-07 43.4 2.5 23 25-47 23-45 (190)
437 1vg8_A RAS-related protein RAB 94.4 0.026 8.7E-07 43.0 3.3 25 24-48 7-31 (207)
438 1oxx_K GLCV, glucose, ABC tran 94.4 0.016 5.4E-07 48.8 2.2 24 24-47 30-53 (353)
439 1ksh_A ARF-like protein 2; sma 94.4 0.031 1.1E-06 41.7 3.7 26 24-49 17-42 (186)
440 3k53_A Ferrous iron transport 94.4 0.028 9.6E-07 45.2 3.6 24 25-48 3-26 (271)
441 3gd7_A Fusion complex of cysti 94.4 0.025 8.5E-07 48.3 3.3 24 24-47 46-69 (390)
442 2y8e_A RAB-protein 6, GH09086P 94.4 0.023 7.8E-07 41.9 2.8 22 26-47 15-36 (179)
443 1zbd_A Rabphilin-3A; G protein 94.4 0.025 8.4E-07 43.0 3.0 24 25-48 8-31 (203)
444 2oil_A CATX-8, RAS-related pro 94.4 0.021 7.3E-07 43.0 2.7 24 25-48 25-48 (193)
445 2efe_B Small GTP-binding prote 94.4 0.025 8.5E-07 41.9 3.0 24 25-48 12-35 (181)
446 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.022 7.5E-07 42.4 2.7 23 26-48 6-28 (186)
447 2a9k_A RAS-related protein RAL 94.3 0.025 8.5E-07 42.1 2.9 24 25-48 18-41 (187)
448 3b1v_A Ferrous iron uptake tra 94.3 0.04 1.4E-06 44.6 4.3 24 25-48 3-26 (272)
449 2bme_A RAB4A, RAS-related prot 94.3 0.021 7.2E-07 42.6 2.5 25 24-48 9-33 (186)
450 3t1o_A Gliding protein MGLA; G 94.3 0.022 7.6E-07 42.8 2.7 23 25-47 14-36 (198)
451 1x6v_B Bifunctional 3'-phospho 94.3 0.025 8.5E-07 51.2 3.3 24 24-47 51-74 (630)
452 3t5g_A GTP-binding protein RHE 94.3 0.024 8.3E-07 42.1 2.8 23 25-47 6-28 (181)
453 2atv_A RERG, RAS-like estrogen 94.3 0.023 7.9E-07 43.0 2.7 25 24-48 27-51 (196)
454 3bwd_D RAC-like GTP-binding pr 94.3 0.026 9E-07 41.8 2.9 24 25-48 8-31 (182)
455 3lxx_A GTPase IMAP family memb 94.3 0.033 1.1E-06 43.8 3.6 25 24-48 28-52 (239)
456 3llu_A RAS-related GTP-binding 94.3 0.026 8.8E-07 42.8 2.9 24 24-47 19-42 (196)
457 2g6b_A RAS-related protein RAB 94.3 0.024 8.1E-07 42.0 2.7 24 25-48 10-33 (180)
458 2bov_A RAla, RAS-related prote 94.3 0.026 8.9E-07 42.8 2.9 25 24-48 13-37 (206)
459 2q3h_A RAS homolog gene family 94.2 0.028 9.4E-07 42.6 3.1 25 24-48 19-43 (201)
460 3tkl_A RAS-related protein RAB 94.2 0.038 1.3E-06 41.5 3.8 25 24-48 15-39 (196)
461 1ega_A Protein (GTP-binding pr 94.2 0.027 9.3E-07 46.2 3.1 25 24-48 7-31 (301)
462 2il1_A RAB12; G-protein, GDP, 94.2 0.027 9.3E-07 42.5 2.9 24 25-48 26-49 (192)
463 2g3y_A GTP-binding protein GEM 94.1 0.029 9.8E-07 43.5 3.0 23 25-47 37-59 (211)
464 3k9g_A PF-32 protein; ssgcid, 94.1 0.05 1.7E-06 43.5 4.5 45 24-71 26-71 (267)
465 2fg5_A RAB-22B, RAS-related pr 94.1 0.025 8.6E-07 42.7 2.6 24 25-48 23-46 (192)
466 3ea0_A ATPase, para family; al 94.1 0.06 2.1E-06 42.2 4.9 40 24-65 3-44 (245)
467 2c61_A A-type ATP synthase non 94.1 0.022 7.5E-07 49.6 2.5 54 25-78 152-208 (469)
468 1gwn_A RHO-related GTP-binding 94.1 0.024 8.3E-07 43.5 2.5 25 24-48 27-51 (205)
469 2o52_A RAS-related protein RAB 94.1 0.029 9.9E-07 42.7 2.9 25 24-48 24-48 (200)
470 2ew1_A RAS-related protein RAB 94.1 0.025 8.5E-07 43.3 2.5 24 24-47 25-48 (201)
471 2fh5_B SR-beta, signal recogni 94.1 0.028 9.6E-07 43.1 2.9 24 25-48 7-30 (214)
472 1zd9_A ADP-ribosylation factor 94.1 0.027 9.1E-07 42.4 2.7 24 25-48 22-45 (188)
473 3dz8_A RAS-related protein RAB 94.1 0.028 9.6E-07 42.3 2.8 23 25-47 23-45 (191)
474 4dkx_A RAS-related protein RAB 94.1 0.027 9.3E-07 43.9 2.8 22 27-48 15-36 (216)
475 3clv_A RAB5 protein, putative; 94.1 0.037 1.3E-06 41.6 3.5 24 25-48 7-30 (208)
476 3reg_A RHO-like small GTPase; 94.1 0.027 9.2E-07 42.5 2.7 24 25-48 23-46 (194)
477 2j1l_A RHO-related GTP-binding 94.1 0.03 1E-06 43.2 3.0 25 24-48 33-57 (214)
478 1zcb_A G alpha I/13; GTP-bindi 94.1 0.036 1.2E-06 46.8 3.7 22 24-45 32-53 (362)
479 1jwy_B Dynamin A GTPase domain 94.1 0.029 1E-06 45.9 3.1 25 24-48 23-47 (315)
480 3oes_A GTPase rhebl1; small GT 94.0 0.029 9.8E-07 42.7 2.8 25 24-48 23-47 (201)
481 2b6h_A ADP-ribosylation factor 94.0 0.039 1.3E-06 41.7 3.5 25 24-48 28-52 (192)
482 2a5j_A RAS-related protein RAB 94.0 0.028 9.4E-07 42.4 2.7 24 25-48 21-44 (191)
483 2qnr_A Septin-2, protein NEDD5 94.0 0.023 7.9E-07 46.7 2.4 21 27-47 20-40 (301)
484 2gf9_A RAS-related protein RAB 94.0 0.031 1.1E-06 41.9 2.9 24 25-48 22-45 (189)
485 2h57_A ADP-ribosylation factor 94.0 0.026 9E-07 42.4 2.5 25 24-48 20-44 (190)
486 2x77_A ADP-ribosylation factor 94.0 0.049 1.7E-06 40.7 4.0 25 24-48 21-45 (189)
487 2obl_A ESCN; ATPase, hydrolase 94.0 0.03 1E-06 47.0 3.0 24 24-47 70-93 (347)
488 3q9l_A Septum site-determining 94.0 0.066 2.3E-06 42.4 4.9 38 26-65 3-41 (260)
489 3hdt_A Putative kinase; struct 94.0 0.032 1.1E-06 43.8 2.9 23 25-47 14-36 (223)
490 4akg_A Glutathione S-transfera 94.0 0.27 9.2E-06 51.7 10.3 118 26-152 924-1061(2695)
491 3iev_A GTP-binding protein ERA 94.0 0.035 1.2E-06 45.6 3.4 26 23-48 8-33 (308)
492 2h17_A ADP-ribosylation factor 93.9 0.027 9.3E-07 42.0 2.4 25 24-48 20-44 (181)
493 1x3s_A RAS-related protein RAB 93.9 0.03 1E-06 42.0 2.7 24 25-48 15-38 (195)
494 3gqb_A V-type ATP synthase alp 93.9 0.035 1.2E-06 49.2 3.4 38 25-66 221-258 (578)
495 1mky_A Probable GTP-binding pr 93.9 0.076 2.6E-06 45.9 5.5 43 6-48 152-203 (439)
496 3gqb_B V-type ATP synthase bet 93.9 0.032 1.1E-06 48.3 3.0 53 25-77 147-209 (464)
497 1z06_A RAS-related protein RAB 93.9 0.044 1.5E-06 41.1 3.5 24 24-47 19-42 (189)
498 3cio_A ETK, tyrosine-protein k 93.9 0.12 4.2E-06 42.2 6.5 41 23-65 102-143 (299)
499 2gf0_A GTP-binding protein DI- 93.9 0.042 1.4E-06 41.4 3.4 24 24-47 7-30 (199)
500 2wjy_A Regulator of nonsense t 93.8 0.082 2.8E-06 49.4 5.9 50 26-77 372-421 (800)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.7e-41 Score=301.74 Aligned_cols=226 Identities=16% Similarity=0.202 Sum_probs=179.3
Q ss_pred ccchhhHHHHHHHHhcC-CCCceEEEEEcCCCCcHHHHHHHHhc--CcccccccceeEEEEeCCCC--CHHHHHHHHHHH
Q 045180 5 VGLDNKMEELLDLLTEG-PPQLSVVAILDSIGLDKTAFAVEAYS--SNYVKYYFDCHAWVEESLLY--DADQILYDIIKF 79 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~ 79 (243)
|||++++++|.++|... ++..++|+|+||||+||||||+++|+ +.+++.+|++++|+++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59999999999999765 34689999999999999999999997 67899999999999999875 789999999999
Q ss_pred hCCCCC--cc---cccChhhhhHHHHHHHHhCCC-eEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccccccccc
Q 045180 80 VMPSSR--LS---EIMEESSEMKKIILHEYLMTK-RYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIVASFQ 153 (243)
Q Consensus 80 l~~~~~--~~---~~~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~ 153 (243)
++.... .. ...+.+.+. ..+++.++++ |+||||||||+.+.+ .+... +||+||||||++.++..+.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~--~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~-----~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLK--RMICNALIDRPNTLFVFDDVVQEETI-RWAQE-----LRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHH--HHHHHHHTTSTTEEEEEEEECCHHHH-HHHHH-----TTCEEEEEESBGGGGGGCC
T ss_pred HhcCcccccccccccccHHHHH--HHHHHHHcCCCcEEEEEECCCCchhh-ccccc-----CCCEEEEEcCCHHHHHHcC
Confidence 987632 00 122345578 8999999996 999999999997754 22221 5999999999988876542
Q ss_pred -------------------ccC---CCCCChhhhhhhhHHHHhcCCchhHHHHH-------HHHHHHHhhHHhhc--CC-
Q 045180 154 -------------------FEN---GENIGLDFLSTGGPLRVTYQGWPFHILYH-------ESISLKENIEEALD--EP- 201 (243)
Q Consensus 154 -------------------f~~---~~~~~~~~~~~~~~i~~~c~glPlai~~~-------~w~~~~~~l~~~~~--~~- 201 (243)
|.+ ....++...+.+++|+++|+|+||||+++ .|..+ +.+..... ..
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~-~~l~~~l~~~~~~ 361 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKM-AQLNNKLESRGLV 361 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHH-HHHHHHHHHHCSS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHH-HHhHHHhhcccHH
Confidence 333 11123667788999999999999999999 56554 44433321 12
Q ss_pred --chhHHhhhhhchhhHHHHHh-----------HhhcCCCCCeechhhhhhcccC
Q 045180 202 --RGLQVLAYCMLTFYLKLCCL-----------YLSVFPVHFEISTKQLYQTWIA 243 (243)
Q Consensus 202 --~~~l~~s~~~L~~~~k~~f~-----------~ls~fp~~~~i~~~~Li~lW~A 243 (243)
..++.+||+.||+++|.||+ |||+||+++.|+ +++|+|
T Consensus 362 ~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a 412 (549)
T 2a5y_B 362 GVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSC 412 (549)
T ss_dssp TTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHH
T ss_pred HHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeee
Confidence 22399999999999999999 999999999999 778875
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.3e-37 Score=296.20 Aligned_cols=233 Identities=17% Similarity=0.144 Sum_probs=184.0
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccc-cccc-ceeEEEEeCCCCC--HHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYV-KYYF-DCHAWVEESLLYD--ADQILYDII 77 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~F-~~~~wv~~~~~~~--~~~~~~~i~ 77 (243)
+.||||++++++|.+.|...++..++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ....+..++
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 56999999999999999876667899999999999999999999996543 4445 5788999988543 344577788
Q ss_pred HHhCCCCCcc--cccChhhhhHHHHHHHHhCCC--eEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccccccccc
Q 045180 78 KFVMPSSRLS--EIMEESSEMKKIILHEYLMTK--RYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIVASFQ 153 (243)
Q Consensus 78 ~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~~ 153 (243)
..+....... ...+.+.+. +.++..+.++ |+||||||+|+.+.+..+ .+||+||||||++.++....
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAK--DRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHH--HHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCC
T ss_pred HHhhhhcccccCCCCCHHHHH--HHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhc
Confidence 8877654321 334567788 8999999877 999999999987665543 45899999999998764321
Q ss_pred --------------------ccC-CCCCChhhhhhhhHHHHhcCCchhHHHHH---------HHHHHHHhhHHhhcCC--
Q 045180 154 --------------------FEN-GENIGLDFLSTGGPLRVTYQGWPFHILYH---------ESISLKENIEEALDEP-- 201 (243)
Q Consensus 154 --------------------f~~-~~~~~~~~~~~~~~i~~~c~glPlai~~~---------~w~~~~~~l~~~~~~~-- 201 (243)
|.. .....+...+.+++|+++|+|+||||+++ .|..+++.+.......
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~ 354 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIR 354 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSS
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcc
Confidence 221 12233455677999999999999999999 7888888876554221
Q ss_pred -------chh---HHhhhhhchhhHHHHHhHhhcCCCCCeechhhhhhcccC
Q 045180 202 -------RGL---QVLAYCMLTFYLKLCCLYLSVFPVHFEISTKQLYQTWIA 243 (243)
Q Consensus 202 -------~~~---l~~s~~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~lW~A 243 (243)
..+ +.+||+.||+++|.||+|||+||+++.|+...++.+|.+
T Consensus 355 ~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~ 406 (1249)
T 3sfz_A 355 KSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDL 406 (1249)
T ss_dssp CTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTC
T ss_pred cccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCC
Confidence 123 999999999999999999999999999999999999974
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=258.52 Aligned_cols=232 Identities=16% Similarity=0.158 Sum_probs=174.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccc-ccccc-eeEEEEeCCCCCHHHH---HHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYV-KYYFD-CHAWVEESLLYDADQI---LYDI 76 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~F~-~~~wv~~~~~~~~~~~---~~~i 76 (243)
+.||||+.++++|.+.|....++.++|+|+||||+||||||.+++++.++ ..+|+ .++|++++.. +...+ +..+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l 202 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNL 202 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHH
Confidence 56999999999999999865456799999999999999999999997655 77894 8999998765 33333 3344
Q ss_pred HHHhCCCCC--cccccChhhhhHHHHHHHHhCC--CeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcccccccc
Q 045180 77 IKFVMPSSR--LSEIMEESSEMKKIILHEYLMT--KRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIVASF 152 (243)
Q Consensus 77 ~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~~~ 152 (243)
+..++.... .....+.+.+. ..++..+.+ +++||||||+|+.+.++. + +++++||+|||+..+....
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAK--DRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHH--HHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGGGTTC
T ss_pred HHHhccccccccCCCCCHHHHH--HHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHHHHhc
Confidence 455653211 11334556677 788888866 789999999987654432 2 4589999999998765432
Q ss_pred c--------------------ccC-CCCCChhhhhhhhHHHHhcCCchhHHHHH---------HHHHHHHhhHHhhcC--
Q 045180 153 Q--------------------FEN-GENIGLDFLSTGGPLRVTYQGWPFHILYH---------ESISLKENIEEALDE-- 200 (243)
Q Consensus 153 ~--------------------f~~-~~~~~~~~~~~~~~i~~~c~glPlai~~~---------~w~~~~~~l~~~~~~-- 200 (243)
. |.. .........+.+.+|+++|+|+||||+++ .|..+++.+......
T Consensus 274 ~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~ 353 (591)
T 1z6t_A 274 MGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRI 353 (591)
T ss_dssp CSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCS
T ss_pred CCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHh
Confidence 1 222 11122234567899999999999999999 598888877654321
Q ss_pred -------Cchh---HHhhhhhchhhHHHHHhHhhcCCCCCeechhhhhhcccC
Q 045180 201 -------PRGL---QVLAYCMLTFYLKLCCLYLSVFPVHFEISTKQLYQTWIA 243 (243)
Q Consensus 201 -------~~~~---l~~s~~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~lW~A 243 (243)
...+ +..||+.||++.|.||++||+||+++.|+...+..+|.+
T Consensus 354 ~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~ 406 (591)
T 1z6t_A 354 RKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM 406 (591)
T ss_dssp SCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC
T ss_pred hhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc
Confidence 1223 999999999999999999999999999999999999964
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.3e-34 Score=266.87 Aligned_cols=221 Identities=19% Similarity=0.128 Sum_probs=163.2
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccce-eEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDC-HAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
.|||++++++|.++|...+ ..++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 4999999999999998743 4789999999999999999999987788899986 9999999998888888887775432
Q ss_pred CC---Ccc------cccChhhhhHHHHHHHHh---CCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcccccc
Q 045180 83 SS---RLS------EIMEESSEMKKIILHEYL---MTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIVA 150 (243)
Q Consensus 83 ~~---~~~------~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~~ 150 (243)
.. ... ...+.+.+. ..+++.+ .++|+||||||+|+.+.|+.+. +||+||||||++.++.
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~--e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHH--HHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHH
T ss_pred cCcccccccccccCCCCCHHHHH--HHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHH
Confidence 11 100 011234556 6777766 7899999999999987777652 4899999999988763
Q ss_pred ccc------ccCCC---CCCh-hhhh---------hhhHHHHhcCCchhHHHHH------------HHHHHHHhhHHhhc
Q 045180 151 SFQ------FENGE---NIGL-DFLS---------TGGPLRVTYQGWPFHILYH------------ESISLKENIEEALD 199 (243)
Q Consensus 151 ~~~------f~~~~---~~~~-~~~~---------~~~~i~~~c~glPlai~~~------------~w~~~~~~l~~~~~ 199 (243)
... ..-.. .... +..+ ......+.|+|+||||+++ .|...
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------- 350 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--------- 350 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC---------
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC---------
Confidence 211 11000 0000 0000 0111224599999999998 33321
Q ss_pred CCchh---HHhhhhhchhhH-HHHHhHhhcCCCCCeechhhhhhcccC
Q 045180 200 EPRGL---QVLAYCMLTFYL-KLCCLYLSVFPVHFEISTKQLYQTWIA 243 (243)
Q Consensus 200 ~~~~~---l~~s~~~L~~~~-k~~f~~ls~fp~~~~i~~~~Li~lW~A 243 (243)
....+ |.+||+.||++. |.||++||+||+++.|+.+.++.+|++
T Consensus 351 ~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~a 398 (1221)
T 1vt4_I 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398 (1221)
T ss_dssp SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCS
T ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcC
Confidence 22333 999999999999 999999999999999999999999985
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=6.6e-15 Score=127.32 Aligned_cols=141 Identities=15% Similarity=0.099 Sum_probs=95.9
Q ss_pred CCcccchhhHHHHHHHH-hcC--C--CCceEEEE--EcCCCCcHHHHHHHHhcCcccccc-----cc-eeEEEEeCCCCC
Q 045180 2 RDTVGLDNKMEELLDLL-TEG--P--PQLSVVAI--LDSIGLDKTAFAVEAYSSNYVKYY-----FD-CHAWVEESLLYD 68 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L-~~~--~--~~~~vv~I--~G~~GiGKTtLa~~~~~~~~~~~~-----F~-~~~wv~~~~~~~ 68 (243)
+.|+||++++++|.+.| ... . ...+.+.| +|++|+|||+|++.+++ ..... ++ .++|+++....+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCC
Confidence 46999999999999998 421 1 24567777 99999999999999988 44332 22 467888767778
Q ss_pred HHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc--------chhhHHHhhC---CCCC-
Q 045180 69 ADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI--------SVWDVIREIL---PDSQ- 134 (243)
Q Consensus 69 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~--------~~~~~l~~~l---~~~~- 134 (243)
...++..++..++..... ...+..++. ..+.+.+. +++++||+||++.. +.+..+...+ +...
T Consensus 100 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~--~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 176 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV-RGAPALDIL--KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC-TTCCHHHHH--HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTS
T ss_pred HHHHHHHHHHHhCCCCCC-CCCCHHHHH--HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCC
Confidence 889999999999765431 123344556 66666664 67999999999653 2232222222 2112
Q ss_pred -CCcEEEEeeCccc
Q 045180 135 -NGSRVLITLSRIE 147 (243)
Q Consensus 135 -~~~~iiiTtR~~~ 147 (243)
.+..+|+||+...
T Consensus 177 ~~~v~lI~~~~~~~ 190 (412)
T 1w5s_A 177 VNRIGFLLVASDVR 190 (412)
T ss_dssp CCBEEEEEEEEETH
T ss_pred CceEEEEEEecccc
Confidence 3456888887554
No 6
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.48 E-value=9.4e-13 Score=112.58 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=96.9
Q ss_pred CCcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcCcccccc------cceeEEEEeCCCCCHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY------FDCHAWVEESLLYDADQIL 73 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~------F~~~~wv~~~~~~~~~~~~ 73 (243)
+.|+||+++++++.+.+... ....+.+.|+|++|+|||++|+.+++ ..... -...++++.....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 46999999999999988542 23567899999999999999999988 44322 1256788888888889999
Q ss_pred HHHHHHhCCCCCcccccChhhhhHHHHHHHHh--CCCeEEEEEeCCCCcc----hhhHHH---hhCCCC--CCCcEEEEe
Q 045180 74 YDIIKFVMPSSRLSEIMEESSEMKKIILHEYL--MTKRYLIVLDNVWRIS----VWDVIR---EILPDS--QNGSRVLIT 142 (243)
Q Consensus 74 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~----~~~~l~---~~l~~~--~~~~~iiiT 142 (243)
..++..++..... ...+..++. ..+.+.+ .+++.+|++|+++... ..+.+. ...... ..+..+|.|
T Consensus 97 ~~l~~~l~~~~~~-~~~~~~~~~--~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 97 SAIAEAVGVRVPF-TGLSVGEVY--ERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHSCCCCS-SCCCHHHHH--HHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHhCCCCCC-CCCCHHHHH--HHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 9999999765432 233345556 6777776 3468899999997542 222222 222111 345678888
Q ss_pred eCccc
Q 045180 143 LSRIE 147 (243)
Q Consensus 143 tR~~~ 147 (243)
|+...
T Consensus 174 t~~~~ 178 (387)
T 2v1u_A 174 TNSLG 178 (387)
T ss_dssp CSCST
T ss_pred ECCCc
Confidence 87653
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.48 E-value=8.6e-14 Score=117.47 Aligned_cols=170 Identities=9% Similarity=0.094 Sum_probs=104.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC------CHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY------DADQILYD 75 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~------~~~~~~~~ 75 (243)
+.|+||++++++|.+.+..+ +++.|+|++|+|||+|++++++ +. ..+|+++.... +...++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLN--ER-----PGILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHH--HS-----SEEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHH--Hc-----CcEEEEeecccccccCCCHHHHHHH
Confidence 46999999999999998763 6899999999999999999987 33 16777764332 55666666
Q ss_pred HHHHhCCC----------------CCcccccChhhhhHHHHHHHHhCC-CeEEEEEeCCCCcch---------hhHHHhh
Q 045180 76 IIKFVMPS----------------SRLSEIMEESSEMKKIILHEYLMT-KRYLIVLDNVWRISV---------WDVIREI 129 (243)
Q Consensus 76 i~~~l~~~----------------~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~---------~~~l~~~ 129 (243)
+.+.+... .......+..++. +.+.+.... ++.+||+||++.... +..+...
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVF--RELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHH--HHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHH--HHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 66655420 0000112334455 555555542 389999999975332 2333322
Q ss_pred CCCCCCCcEEEEeeCccccccc----------c------c-----ccC-----------CCCCChhhhhhhhHHHHhcCC
Q 045180 130 LPDSQNGSRVLITLSRIEIVAS----------F------Q-----FEN-----------GENIGLDFLSTGGPLRVTYQG 177 (243)
Q Consensus 130 l~~~~~~~~iiiTtR~~~~~~~----------~------~-----f~~-----------~~~~~~~~~~~~~~i~~~c~g 177 (243)
... ..+.++|+|++....... . . |.. .........+.+..+.+.|+|
T Consensus 159 ~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG 237 (350)
T 2qen_A 159 YDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDG 237 (350)
T ss_dssp HHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTT
T ss_pred HHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 211 247789999876432110 0 0 110 000001123456788999999
Q ss_pred chhHHHHH
Q 045180 178 WPFHILYH 185 (243)
Q Consensus 178 lPlai~~~ 185 (243)
+|+++..+
T Consensus 238 ~P~~l~~~ 245 (350)
T 2qen_A 238 IPGWLVVF 245 (350)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99999887
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=7.4e-13 Score=113.40 Aligned_cols=141 Identities=13% Similarity=0.010 Sum_probs=96.5
Q ss_pred CCcccchhhHHHHHHHHhc--CCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc--------cceeEEEEeCCCC-CHH
Q 045180 2 RDTVGLDNKMEELLDLLTE--GPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY--------FDCHAWVEESLLY-DAD 70 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~--~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--------F~~~~wv~~~~~~-~~~ 70 (243)
++|+||+++++++.+.+.. .....+.+.|+|++|+|||++|+.+++ ..... ....+|++..... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 5699999999999988865 233467899999999999999999988 44222 2356788776666 788
Q ss_pred HHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCcch---hhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 71 QILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRISV---WDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 71 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
.++..++..+..........+...+. ..+.+.+..++.+|++|+++.... .+.+...+.....+..+|+||+..
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~--~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYI--DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHH--HHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSST
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHH--HHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCC
Confidence 88899988883322211233345667 788888877766999999964321 122022221111578899998875
No 9
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=7.3e-13 Score=111.94 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=79.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-----CCHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL-----YDADQILYDI 76 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i 76 (243)
+.|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++ +... ..+|+++... .+...++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHH
Confidence 469999999999999 654 5899999999999999999987 4332 2578876542 3445555555
Q ss_pred HHHhCC-------------CC-----Cc--c-------cccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc------chh
Q 045180 77 IKFVMP-------------SS-----RL--S-------EIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI------SVW 123 (243)
Q Consensus 77 ~~~l~~-------------~~-----~~--~-------~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------~~~ 123 (243)
.+.+.. .. +. . .......+. +.+.+... ++.+||+||++.. +.+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLL--ESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHH--HHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHH--HHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 443310 00 00 0 011223333 44433322 4899999999652 122
Q ss_pred hHHHhhCCCCCCCcEEEEeeCccc
Q 045180 124 DVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 124 ~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
..+.... +...+.++|+|+|...
T Consensus 159 ~~l~~~~-~~~~~~~~i~~g~~~~ 181 (357)
T 2fna_A 159 PALAYAY-DNLKRIKFIMSGSEMG 181 (357)
T ss_dssp HHHHHHH-HHCTTEEEEEEESSHH
T ss_pred HHHHHHH-HcCCCeEEEEEcCchH
Confidence 2332222 1123678999998753
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=6.4e-12 Score=107.58 Aligned_cols=140 Identities=12% Similarity=0.105 Sum_probs=98.7
Q ss_pred CCcccchhhHHHHHHHHhcC----CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc-ceeEEEEeCCCCCHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG----PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF-DCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~----~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 76 (243)
++++||+++++++.+.+... ....+.+.|+|++|+|||+|++.+++ ...... ...++++.....+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 46999999999999988762 21233899999999999999999987 444331 256778877777888999999
Q ss_pred HHHhCCCCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCCc--chhhHHHhhCCCCC----CCcEEEEeeCcc
Q 045180 77 IKFVMPSSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWRI--SVWDVIREILPDSQ----NGSRVLITLSRI 146 (243)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~--~~~~~l~~~l~~~~----~~~~iiiTtR~~ 146 (243)
+..++..... ...+...+. ..+.+.+. +++.+|++|+++.. +....+...+.... .+..+|++|++.
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~--~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFL--ALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHH--HHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHhCccCCC-CCCCHHHHH--HHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 9988765332 223445555 56665553 56889999999654 34555555553321 367788888765
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=2e-12 Score=110.41 Aligned_cols=141 Identities=12% Similarity=0.114 Sum_probs=94.5
Q ss_pred CCcccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc---ceeEEEEeCCCCCHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF---DCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F---~~~~wv~~~~~~~~~~~~~~i 76 (243)
++|+||+++++.+.+.+... ....+.+.|+|++|+|||+|++.+++ .....+ ...+|++.....+...++..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 46999999999999988752 23567899999999999999999988 444432 256777766666777888888
Q ss_pred HHHhCCCCCcccccChhhhhHHHHHHHHhC--CCeEEEEEeCCCC------cchhhHHHhhCCC-CCCCcEEEEeeCccc
Q 045180 77 IKFVMPSSRLSEIMEESSEMKKIILHEYLM--TKRYLIVLDNVWR------ISVWDVIREILPD-SQNGSRVLITLSRIE 147 (243)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~------~~~~~~l~~~l~~-~~~~~~iiiTtR~~~ 147 (243)
+..++..... ...+..+.. ..+.+.+. +++.+|++|+++. .+.+..+...+.. ...+..+|+||+...
T Consensus 98 ~~~l~~~~~~-~~~~~~~~~--~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 98 LESLDVKVPF-TGLSIAELY--RRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TTTTSCCCCS-SSCCHHHHH--HHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHhCCCCCC-CCCCHHHHH--HHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 8877654331 222344555 66666664 4589999999954 2333344333311 233567788887654
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=3e-11 Score=96.13 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=74.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
.+++||+..++.|...+..+. ..+.+.|+|++|+|||++|+.+++ .....+.... ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~--~~~~~~~~~~----~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK--GLNCETGITA----TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHH--HHHCTTCSCS----SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH--HhcCCCCCCC----CCCcccHH-HHHHhccCC
Confidence 358999999999999998753 345889999999999999999987 3332221000 00000000 011110000
Q ss_pred CCCCcc--cccChhhhhHHHHHHHHh-----CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 82 PSSRLS--EIMEESSEMKKIILHEYL-----MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
...... ......... ..+.+.+ .+++.+||+||++.. +.++.+...+.....+..+|+||+...
T Consensus 95 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDT--RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEETTCGGGHHHH--HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred cceEEecCcccccHHHH--HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000000 000001111 2222222 345789999999653 455666666555455788888887643
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=1.5e-10 Score=90.87 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=74.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc-cc-eeEEEEeCCCCCHHHHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FD-CHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
.+++||++.++.+.+.+.... ...+.|+|++|+|||++|+.+++ ..... +. ..+.++.+.......+...+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHH
Confidence 368999999999999998763 33489999999999999999887 43222 22 23334433333322221111111
Q ss_pred hCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
..... ...+++.+|++||++.. +..+.+...+.....++.+|+||+...
T Consensus 93 ~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 93 ARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred hcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 10000 00256789999999654 334455554444445778888887653
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=3.9e-09 Score=88.02 Aligned_cols=111 Identities=8% Similarity=-0.022 Sum_probs=76.3
Q ss_pred cccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhcCcccccc-----c-c-eeEEEEeCCCCCHHHHHH
Q 045180 4 TVGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-----F-D-CHAWVEESLLYDADQILY 74 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-----F-~-~~~wv~~~~~~~~~~~~~ 74 (243)
+.||++++++|...|... ......+.|+|++|+|||++++.+++ +.... . + ..+.++.....+...++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 679999999999888763 34677899999999999999999998 44321 1 1 456777777778889999
Q ss_pred HHHHHhCCCCCcccccChhhhhHHHHHHHHh---CCCeEEEEEeCCCCc
Q 045180 75 DIIKFVMPSSRLSEIMEESSEMKKIILHEYL---MTKRYLIVLDNVWRI 120 (243)
Q Consensus 75 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~ 120 (243)
.|++++.+... ......+.. ..+...+ .+++++++||+++..
T Consensus 100 ~I~~~L~g~~~--~~~~~~~~L--~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 100 KIWFAISKENL--CGDISLEAL--NFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHSCCC----CCCCHHHH--HHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHhcCCCC--CchHHHHHH--HHHHHHhhhccCCceEEEEecHHHh
Confidence 99999976532 111112222 3333332 456899999999764
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.4e-09 Score=90.55 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=72.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc-cc-eeEEEEeCCCCCHHHHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FD-CHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
++++|++..++.+.+.+..+. ...+.++|++|+|||++|+.+++ .+... +. ..+.++.+....... +..++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~-- 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAH--ELLGRSYADGVLELNASDDRGIDV-VRNQI-- 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHH--HHHGGGHHHHEEEECTTSCCSHHH-HHTHH--
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCCEEEecCccccChHH-HHHHH--
Confidence 368999999999999998763 23389999999999999999988 44221 21 233443332222111 11111
Q ss_pred hCCCCCcccccChhhhhHHHHHHH---Hh-CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHE---YL-MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~---~l-~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
..+.. .+ .+++.++|+||++.. +..+.+...+.....++.+|+||+..
T Consensus 94 -------------------~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 94 -------------------KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp -------------------HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred -------------------HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 11110 11 345789999999754 33444444443334567888888664
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.92 E-value=1.4e-09 Score=83.35 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=38.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++||+++++++.+.+... ..+.+.|+|++|+|||++|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999875 356788999999999999999887
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=6.1e-09 Score=86.84 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=71.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc-c-eeEEEEeCCCCCHHHHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF-D-CHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
++++|+++.++.+.+.+..+. ...+.++|++|+|||++|+.+++ .+.... . ..+.++.+.....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~--~l~~~~~~~~~~~~~~~~~~~~---------- 90 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAR--ELFGENWRHNFLELNASDERGI---------- 90 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHH--HHHGGGHHHHEEEEETTCHHHH----------
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHH--HhcCCcccCceEEeeccccCch----------
Confidence 468999999999999998763 33489999999999999999988 432221 1 2233332211000
Q ss_pred hCCCCCcccccChhhhhHHHHHHHH-----h-CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEY-----L-MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~-----l-~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
+.+. ..+.+. + .+++.++++|+++.. +..+.+...+.....++++|+||...
T Consensus 91 -------------~~~~--~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 91 -------------NVIR--EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -------------HTTH--HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -------------HHHH--HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 1111 111111 1 156789999999754 34455555544444577888888664
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.74 E-value=1e-08 Score=78.17 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=38.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++||+++++.+.+.+... ..+.+.|+|++|+|||++|+.+++
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999775 356778999999999999999887
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.68 E-value=3.5e-08 Score=81.92 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=72.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccc-cccc-eeEEEEeCCCCCHHHHHHHHHHH
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVK-YYFD-CHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~F~-~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
++++|++..++.+.+.+..+. ...+.++|++|+|||++|+.+++ .+. ..+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~--~l~~~~~~~~~~~~~~~~~~~----------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERG----------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHH--HHHTTCHHHHCEEEETTSTTC-----------
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHH--HhcCCcccCCeEEEeCccccC-----------
Confidence 358999999999998887653 33489999999999999999887 431 1121 223333332110
Q ss_pred hCCCCCcccccChhhhhHHHHHHHHh------CCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEYL------MTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~l------~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
.+... ..+.... .+++.++++|+++.. +..+.+...+.....++.+|+||....
T Consensus 82 ------------~~~~~--~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 82 ------------IDVVR--HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp ------------TTTSS--HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred ------------hHHHH--HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 11111 2222221 256789999999654 344556666655556778888876543
No 20
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.64 E-value=7e-08 Score=71.27 Aligned_cols=112 Identities=9% Similarity=-0.070 Sum_probs=65.2
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCC
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMP 82 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 82 (243)
+++|+...+.++.+.+..-.....-|.|+|++|+|||++|+.+++. ....-...+ ++.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~--~~~~~~~~v-~~~~~~~~~------------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF--GRNAQGEFV-YRELTPDNA------------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS--STTTTSCCE-EEECCTTTS-------------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh--CCccCCCEE-EECCCCCcc-------------
Confidence 6899999999999988643223455889999999999999999873 211111223 554432211
Q ss_pred CCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCc
Q 045180 83 SSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSR 145 (243)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~ 145 (243)
.... ..+... ..-.|++|+++.. +....+...+.......++|.||..
T Consensus 66 ----------~~~~--~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN--DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH--HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh--cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 222221 2247899999654 2334444444333445678777764
No 21
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.64 E-value=1.3e-07 Score=80.29 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++||+..++.+.+.+..+. ....+.|+|++|+|||++|+.+++
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999997753 345788999999999999999887
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=3.9e-08 Score=80.64 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.++.+++|.+.+... -...+.+.|+|++|+|||++|+.+++
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35899999999998887431 12456799999999999999999988
No 23
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.56 E-value=1.5e-07 Score=73.18 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=63.1
Q ss_pred Ccccchh----hHHHHHHHHhcCCC--CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 045180 3 DTVGLDN----KMEELLDLLTEGPP--QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 3 ~~vGR~~----~~~~l~~~L~~~~~--~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 76 (243)
+|++.+. .++.+.+.+..... ..+.+.|+|++|+|||+||+.+++ ........+++++. .++...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~------~~~~~~~ 97 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV------PELFREL 97 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH------HHHHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh------HHHHHHH
Confidence 4665443 34445555554321 126889999999999999999988 44444345556643 3444444
Q ss_pred HHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc--chh--hHHHh-hCCCC-CCCcEEEEeeCc
Q 045180 77 IKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI--SVW--DVIRE-ILPDS-QNGSRVLITLSR 145 (243)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~--~~l~~-~l~~~-~~~~~iiiTtR~ 145 (243)
....... ...... ..+. . .-+|||||++.. ..| ..+.. .+... ..+.++|+||..
T Consensus 98 ~~~~~~~-------~~~~~~--~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 98 KHSLQDQ-------TMNEKL--DYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHC---C-------CCHHHH--HHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHhccc-------hHHHHH--HHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 4322211 112222 2222 2 239999999542 221 11211 11111 234568888875
No 24
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.51 E-value=4.5e-07 Score=75.72 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
++++|+++.++.+.+++..+. ....+.+.|++|+|||++|+.+++ .... ..+.++.+.. ... .+...+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~--~l~~---~~~~i~~~~~-~~~-~i~~~~~--- 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCH--DVNA---DMMFVNGSDC-KID-FVRGPLT--- 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHH--HTTE---EEEEEETTTC-CHH-HHHTHHH---
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHH--HhCC---CEEEEccccc-CHH-HHHHHHH---
Confidence 468999999999999998653 346778888999999999999987 4421 2344443331 111 1111111
Q ss_pred CCCCcccccChhhhhHHHHHHHH--hCCCeEEEEEeCCCCcc---hhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 82 PSSRLSEIMEESSEMKKIILHEY--LMTKRYLIVLDNVWRIS---VWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
..... ..+++.++++|+++... ..+.+...+.....++.+|+||....
T Consensus 95 ------------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 95 ------------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp ------------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred ------------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 11111 12367899999997653 33444444332234567888876643
No 25
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.47 E-value=2.2e-07 Score=76.90 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=35.9
Q ss_pred CcccchhhHHHHHHHHhcC-------------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-------------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-------------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++.++.|.+.+... ......+.|+|++|+|||++|+.+++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999888765421 22456789999999999999998877
No 26
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.46 E-value=2.6e-07 Score=70.51 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=61.4
Q ss_pred hhHHHHHHHHhcCC-CCceEEEEEcCCCCcHHHHHHHHhcCcccc--cccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 045180 9 NKMEELLDLLTEGP-PQLSVVAILDSIGLDKTAFAVEAYSSNYVK--YYFDCHAWVEESLLYDADQILYDIIKFVMPSSR 85 (243)
Q Consensus 9 ~~~~~l~~~L~~~~-~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 85 (243)
+.++.+.+.+..-. .....+.|+|++|+|||||++.+++ ... ..+ .+.++ +..++...+.........
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~--~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK--AIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH--HHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH--HHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchH
Confidence 33344444443321 2357899999999999999999988 442 222 23333 345555555544332211
Q ss_pred cccccChhhhhHHHHHHHHhCCCeEEEEEeCCCC--cchh--hHHHhhCCCC-CCCcEEEEeeCcc
Q 045180 86 LSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWR--ISVW--DVIREILPDS-QNGSRVLITLSRI 146 (243)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~~~--~~l~~~l~~~-~~~~~iiiTtR~~ 146 (243)
.... ..+. +.-+||||++.. .+.+ +.+...+... ..+..+|+||...
T Consensus 92 -------~~~~--~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 -------TKFL--KTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -------SHHH--HHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -------HHHH--HHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1222 2222 456899999973 2222 2222222111 2367788888653
No 27
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.46 E-value=4.2e-07 Score=75.73 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG---PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++|+|++..+..+.+.+... ......+.|+|++|+|||++|+.+++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998887631 12346788999999999999999987
No 28
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.45 E-value=1.1e-07 Score=75.38 Aligned_cols=58 Identities=5% Similarity=-0.008 Sum_probs=38.6
Q ss_pred CCcccch---hhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 2 RDTVGLD---NKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 2 ~~~vGR~---~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
++|+|++ ..++.+...+... ..+.+.|+|++|+|||++|+.+++ ........+.+++.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPL 88 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEH
Confidence 3577633 5556666665543 457889999999999999999987 44433334556654
No 29
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.44 E-value=4.4e-07 Score=79.25 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=68.6
Q ss_pred Ccc-cchhhH--HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccc--eeEEEEeCCCCCHHHHHHHHH
Q 045180 3 DTV-GLDNKM--EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD--CHAWVEESLLYDADQILYDII 77 (243)
Q Consensus 3 ~~v-GR~~~~--~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~ 77 (243)
+|+ |..... ..+......+.. ...+.|+|++|+|||+||+.+++ .....++ .+++++ ...+...+.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~------~~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYIT------SEKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEE------HHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEee------HHHHHHHHH
Confidence 355 544332 333333333322 66799999999999999999988 5544432 234543 233444455
Q ss_pred HHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCcc----hhhHHHhhCCC-CCCCcEEEEeeCcc
Q 045180 78 KFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRIS----VWDVIREILPD-SQNGSRVLITLSRI 146 (243)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~ 146 (243)
..+.... . ..+...+..+.-+|++|+++... ..+.+...+.. ...+..||+||.+.
T Consensus 177 ~~~~~~~-----------~--~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 177 DSMKEGK-----------L--NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHHHTTC-----------H--HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred HHHHccc-----------H--HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4443221 1 34444554466799999996432 22333333211 13367788888763
No 30
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.43 E-value=4e-07 Score=76.16 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.3
Q ss_pred CCcccchhhHHHHHHHHh----------cCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLT----------EGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~----------~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++.++.|.+.+. ......+.+.++|++|+|||+||+.+++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 358999999999998872 1122356799999999999999999988
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.42 E-value=3.6e-07 Score=73.70 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCcccchhhHHHHHHHHh---cCC-------CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLT---EGP-------PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~---~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++.++.|.+.+. ... ...+.+.|+|++|+|||++|+.+++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468999988888876543 111 2456788999999999999999988
No 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.41 E-value=3.7e-07 Score=76.87 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.8
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|+++.++.+...+..+. ...+.++|++|+|||++|+.+++
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999987763 23389999999999999999988
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.39 E-value=5.4e-06 Score=70.22 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=36.3
Q ss_pred CCcccchhhHHH---HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEE---LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~---l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++|+|++..++. +.+.+..+....+.+.|+|++|+|||++|+.+++
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 368999998776 4555555533346899999999999999999988
No 34
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.36 E-value=2.9e-07 Score=67.74 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=34.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
-+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+.+++
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHH
Confidence 3589999999999888764211334588999999999999999887
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.34 E-value=2.1e-06 Score=69.87 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=35.1
Q ss_pred CCcccchhhHHHHHH-------HHhcC-CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLD-------LLTEG-PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~-------~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++|....++++.. .+... ......+.|+|++|+|||++|+.+++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 357888887777666 33221 33567899999999999999999988
No 36
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.34 E-value=8.5e-07 Score=74.09 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=64.0
Q ss_pred Ccc-cchh--hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 3 DTV-GLDN--KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 3 ~~v-GR~~--~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
+|+ |... ....+...+..+......+.|+|++|+|||+||+.+++ .....-..+++++ ..++...+...
T Consensus 12 ~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~--~~~~~~~~~~~i~------~~~~~~~~~~~ 83 (324)
T 1l8q_A 12 NFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGN--EAKKRGYRVIYSS------ADDFAQAMVEH 83 (324)
T ss_dssp SCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHH--HHHHTTCCEEEEE------HHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEE------HHHHHHHHHHH
Confidence 455 5332 33444554444432456789999999999999999988 4422211344553 23344444433
Q ss_pred hCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCcc----hhhHHHhhCCC-CCCCcEEEEeeCcc
Q 045180 80 VMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRIS----VWDVIREILPD-SQNGSRVLITLSRI 146 (243)
Q Consensus 80 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~l~~~l~~-~~~~~~iiiTtR~~ 146 (243)
+.... . ..+...+. +..+|++|++.... ..+.+...+.. ...+..||+||.+.
T Consensus 84 ~~~~~-----------~--~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 84 LKKGT-----------I--NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHTC-----------H--HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHcCc-----------H--HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 32111 1 23333332 35699999996432 12233322211 12356788887643
No 37
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=1.9e-06 Score=72.62 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=35.8
Q ss_pred CCcccchhhHHHHHHHH-hcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLL-TEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L-~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|++...+.+.+.+ ..+. ... +.|+|++|+||||+++.+++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 35899999999998888 4432 334 89999999999999988776
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.32 E-value=4.1e-06 Score=70.06 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=36.6
Q ss_pred CCcccchhhHHHHHHHHhc---------C-CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE---------G-PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~---------~-~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.++.++.|.+.+.. + ....+.+.++|++|+|||+||+.+++
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 3578999999888877632 1 12347899999999999999999988
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.29 E-value=7.3e-07 Score=75.70 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=37.7
Q ss_pred CCcccchhhHHHHHHHHhc----------CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE----------GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++.+++|.+.+.. .....+.+.|+|++|+|||++|+.+++
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999888753 112457899999999999999999987
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.28 E-value=1.5e-06 Score=74.48 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhcC----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..++.|.+.+... ....+.+.|+|++|+|||+||+.+++
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999887321 12346899999999999999999987
No 41
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.27 E-value=9e-07 Score=71.81 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=35.4
Q ss_pred CCcccchhhHHHHHHHHhc----------CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE----------GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++.++.+.+.+.. +....+-+.|+|++|+|||++|+.+++
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 4689999988888876641 111234478999999999999999988
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.27 E-value=5e-06 Score=72.61 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCcccchhhH---HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKM---EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~---~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.+..+ ..|...+..+ ....+.|+|++|+|||++|+.+++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHH
Confidence 4689999888 7788888776 346799999999999999999988
No 43
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.26 E-value=5.1e-06 Score=68.73 Aligned_cols=45 Identities=24% Similarity=0.205 Sum_probs=36.9
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++.+++|.+.+... -...+.+.|+|++|+|||+||+.+++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 5889999988888876531 12457799999999999999999988
No 44
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.25 E-value=5.5e-06 Score=68.71 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=38.1
Q ss_pred CCCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 1 NRDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 1 ~~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.++|+...+.++.+.+..-......|.|+|.+|+|||++|+.+++
T Consensus 1 ~~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 1 GSHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp --CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence 46799999999999988876332445688999999999999999887
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.24 E-value=3.4e-06 Score=74.16 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=38.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++||++++..+.+.|... ...-+.++|++|+|||++|+.+++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999875 344678999999999999999887
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=2.6e-06 Score=75.88 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=38.9
Q ss_pred CCcccchhhHHHHHHHHhcCC---------------CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGP---------------PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~---------------~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|++..+++|.+++.... +..+.+.|+|++|+|||++|+.+++
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999997510 1347899999999999999999988
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.22 E-value=5.4e-06 Score=72.42 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=36.9
Q ss_pred CCcccchhhHHHHHHHHhc----------CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE----------GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.++.++.|.+.+.. .....+.+.|+|++|+|||+||+.+++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999887731 012357899999999999999999988
No 48
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.20 E-value=2.4e-06 Score=72.47 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=36.5
Q ss_pred CCcccchhhHHHHHHHHhc----------CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE----------GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~----------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++.++.|.+.+.. .....+-+.|+|++|+|||+||+.+++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence 3588999999999887731 112345688999999999999999988
No 49
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.20 E-value=2.1e-06 Score=69.51 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=34.3
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 3589999999998877764222345688999999999999999987
No 50
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.19 E-value=3.1e-06 Score=69.61 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=37.4
Q ss_pred CCcccchhhHHHHHHHHhcC----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+..++.|.+.+..+ ....+.+.|+|++|+|||++|+.+++
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 36899999999998877431 12356899999999999999999988
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.16 E-value=3.8e-06 Score=69.40 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=44.0
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++ .....-...+.++.+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~--~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA--TLFDTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH--HHHSCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH--HHcCCCcceEEeeccc
Confidence 46889999999998887653 11245899999999999999999887 4432222344555443
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.14 E-value=3.1e-06 Score=74.79 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=37.3
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..+++|.+.+... ....+-|.|+|++|+|||++|+.+++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 5789999999998877532 23456799999999999999999987
No 53
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=7.8e-06 Score=68.70 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..++.|...+..+. ...+.++|++|+||||+|+.+++
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999988888763 22388999999999999999887
No 54
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.11 E-value=3e-05 Score=65.05 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 8 DNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 8 ~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++..+.+.+.+..+. -...+.++|++|+|||++|+.+++
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHH
Confidence 455667777776553 356789999999999999998876
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.10 E-value=3.9e-06 Score=79.08 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=38.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++||++++.++.+.|... ....+.++|++|+|||++|+.+++
T Consensus 170 d~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999876 334578999999999999999987
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.08 E-value=1e-05 Score=75.22 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=38.4
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++||++++.++...|... ...-+.++|++|+|||++|+.+++
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999875 344578999999999999999887
No 57
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3.6e-05 Score=63.80 Aligned_cols=118 Identities=11% Similarity=0.061 Sum_probs=67.0
Q ss_pred cchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCc-ccccccceeEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 045180 6 GLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSN-YVKYYFDCHAWVEESL-LYDADQILYDIIKFVMPS 83 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~-~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 83 (243)
|-++.++.|.+.+..+. .....++|++|+|||++|..+++.. ...........++.+. ...+.+ .+++...+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~ 77 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYS 77 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSC
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhc
Confidence 45666778888887764 6789999999999999999987621 0111122334443322 222222 12233322211
Q ss_pred CCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 84 SRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
. ..+++-++|+|+++.. +..+.+...+-..+..+.+|++|.+.
T Consensus 78 p--------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 78 P--------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp C--------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred c--------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 1 0244568899999654 34566666665555577777776543
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.96 E-value=6.9e-05 Score=69.68 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=38.5
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++||++++.++.+.|... ...-+.|+|++|+|||++|+.+++
T Consensus 186 d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999876 345678999999999999999887
No 59
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.95 E-value=3.3e-06 Score=70.22 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=33.4
Q ss_pred hHHHHHHHHhcCCC-CceEEEEEcCCCCcHHHHHHHHhcCcccc-cccceeEEEEe
Q 045180 10 KMEELLDLLTEGPP-QLSVVAILDSIGLDKTAFAVEAYSSNYVK-YYFDCHAWVEE 63 (243)
Q Consensus 10 ~~~~l~~~L~~~~~-~~~vv~I~G~~GiGKTtLa~~~~~~~~~~-~~F~~~~wv~~ 63 (243)
.++.+.+++..... ....+.|+|++|+|||+||..+++ ... .....+.++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~--~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAH--ELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHH--HHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEH
Confidence 44445555554321 246788999999999999999988 443 33234455543
No 60
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.92 E-value=1.6e-05 Score=69.87 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=33.9
Q ss_pred CcccchhhHHHHHHHHhc---C-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTE---G-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++.++++.+.+.. . ...++-+.|+|++|+|||+||+.+++
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 578888887777665432 1 11234588999999999999999988
No 61
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.89 E-value=1.6e-05 Score=63.94 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=34.3
Q ss_pred CCcccchhhHHHHHHHHh---cC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLT---EG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~---~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.+..++++.+.+. .. ....+-+.|+|++|+|||++|+.+++
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 357898888887766542 11 11245688999999999999999987
No 62
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.3e-05 Score=68.65 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
++.|-++.+++|.+.+.-+ -..++-|.++|++|+|||.||+.+++ +....|
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f 210 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF 210 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc
Confidence 4678888888887765421 13467799999999999999999998 544443
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=1.8e-05 Score=68.57 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
++.|-++.+++|.+.+.-+ -..++-|.++|++|+|||.||+.+++ .....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~ 242 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGAN 242 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCC
Confidence 5678888888887766431 13567899999999999999999998 44433
No 64
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.86 E-value=0.0001 Score=57.43 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc----------ccccChh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRL----------SEIMEES 93 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~~~~ 93 (243)
...++.|.|++|+|||||+..++. ..-..++|++.....+...+. .+....+..... .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLV-QMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHH-HHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHH-HHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 457899999999999999998876 122367788876655554443 233333221000 0111112
Q ss_pred hhhHHHHHHHHhCCCeEEEEEeCCCC
Q 045180 94 SEMKKIILHEYLMTKRYLIVLDNVWR 119 (243)
Q Consensus 94 ~~~~~~~l~~~l~~~~~LlvlDdv~~ 119 (243)
+.. ..++..+..+.-++|+|.+..
T Consensus 93 ~~~--~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVI--GSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHH--HHHHHHCCTTEEEEEEECCCC
T ss_pred HHH--HHHHHHhhcCCCEEEEcCcHH
Confidence 344 555555544577999999854
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.86 E-value=1.4e-05 Score=59.21 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+.|+|++|+|||+|++.++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.84 E-value=2.4e-05 Score=64.45 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++.+.++|++|+|||+||+.+++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999999998
No 67
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=2e-05 Score=68.56 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=38.9
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 3 DTVGLDNKMEELLDLLTE-----------GPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
++.|-++.+++|.+.+.- +-..++-|.++|++|+|||.||+.+++ +....|
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f 271 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF 271 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe
Confidence 577888888888776432 113578899999999999999999998 554443
No 68
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.81 E-value=1.2e-05 Score=67.44 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=38.6
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG---PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|++..++++..++... ......+.|+|++|+|||++|+.+++
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 36899999999999888753 23456789999999999999999987
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=2.6e-05 Score=67.52 Aligned_cols=50 Identities=22% Similarity=0.186 Sum_probs=38.4
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 3 DTVGLDNKMEELLDLLTE-----------GPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
++.|-++.+++|.+.+.. +-..++-+.++|++|+|||++|+.+++ ....+
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~--~~~~~ 233 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN--STKAA 233 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH--HHTCE
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH--HhCCC
Confidence 567888888888776542 113567799999999999999999998 44433
No 70
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.79 E-value=2.3e-05 Score=60.49 Aligned_cols=114 Identities=11% Similarity=-0.043 Sum_probs=63.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC---CCHHHHHHHHHHHhCCC---------CCccc----
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL---YDADQILYDIIKFVMPS---------SRLSE---- 88 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~~l~~~---------~~~~~---- 88 (243)
...|.|++..|.||||+|.-++- +...+--.+..+.+... .....+ +..++.. .....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHH
Confidence 35666777788999999977665 44444334555544332 222333 3333200 00000
Q ss_pred ccChhhhhHHHHHHHHhCCCeE-EEEEeCCCC-----cchhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 89 IMEESSEMKKIILHEYLMTKRY-LIVLDNVWR-----ISVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~-----~~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
........ ...++.+.+.+| |||||++-. .-..+++...+........||+|+|+.
T Consensus 102 ~~~a~~~l--~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVW--QHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHH--HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHH--HHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 01112333 556666655444 999999832 223455555555556678899999984
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.75 E-value=5e-05 Score=70.62 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=36.9
Q ss_pred CCcccchhhHHHHHHHHhcCC-------CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGP-------PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.+..++.+.+.+.... .....+.++|++|+|||++|+.+++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 458899999988888876421 1223799999999999999999887
No 72
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=2.5e-05 Score=67.67 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=38.2
Q ss_pred CcccchhhHHHHHHHHhc----C-------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccc
Q 045180 3 DTVGLDNKMEELLDLLTE----G-------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYY 54 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~----~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~ 54 (243)
++.|-++.+++|.+.+.. + -..++-|.++|++|+|||.||+.+++ +....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~ 242 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNAT 242 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCE
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCC
Confidence 567888888888776432 1 13567899999999999999999998 44433
No 73
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.72 E-value=0.00013 Score=61.73 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
...++.|.|++|+|||||+.+++. .....-..++|++.....+.. .++.++...... ...+.++.. ..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l--~~ 130 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQAL--EI 130 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHH--HH
Confidence 457999999999999999999887 333322357788877766643 455666543211 233455555 55
Q ss_pred HHHHhC-CCeEEEEEeCCCC
Q 045180 101 LHEYLM-TKRYLIVLDNVWR 119 (243)
Q Consensus 101 l~~~l~-~~~~LlvlDdv~~ 119 (243)
+...++ .+.-++|+|.+..
T Consensus 131 ~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 131 VDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHHTSCCSEEEEECTTT
T ss_pred HHHHhhhcCCCeEEehHhhh
Confidence 555553 4556899998743
No 74
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.71 E-value=5.4e-05 Score=66.26 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=35.5
Q ss_pred CCcccchhhHHHHHHH---HhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDL---LTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~---L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.++.++.+... +..+....+-+.++|++|+|||++|+.+++
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHH
Confidence 4689999988765444 334433446789999999999999999988
No 75
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.68 E-value=2.2e-05 Score=62.10 Aligned_cols=114 Identities=14% Similarity=0.016 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
+..++.++|..|+||||++..+++ +...+-..++.+...... . ....++..++............++. +.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~--~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEIL--NYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHH--HHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHH--HHHHH
Confidence 357899999999999999988777 444333334444332211 1 2223444454332211222334455 55555
Q ss_pred HhCCCe-EEEEEeCCCCc--chhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 104 YLMTKR-YLIVLDNVWRI--SVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 104 ~l~~~~-~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
.+.+.+ -+|++|.+... +..+.+.... + .+..||+|-++.+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~-~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANILA-E--NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHHHH-H--TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHHHH-h--CCCeEEEEecccc
Confidence 544444 49999998643 3334443322 1 2678999988655
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.68 E-value=0.00026 Score=62.50 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=33.9
Q ss_pred CCcccchhhHHHHHHHHh---cCC-------CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLT---EGP-------PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~---~~~-------~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++.+.++.+... ... .-.+-+.|+|++|+|||+||+.++.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468898888777766543 210 1133489999999999999999987
No 77
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=4.5e-05 Score=65.72 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=38.5
Q ss_pred CcccchhhHHHHHHHHhc----C-------CCCceEEEEEcCCCCcHHHHHHHHhcCccccccc
Q 045180 3 DTVGLDNKMEELLDLLTE----G-------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF 55 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~----~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F 55 (243)
++-|-++.+++|.+.+.. + -..++-|.++|++|+|||.||+.+++ +....|
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f 244 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF 244 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE
Confidence 466888888888776532 1 13467899999999999999999998 444433
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.66 E-value=4e-05 Score=71.24 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred CcccchhhHHHHHHHHhc----C-------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 045180 3 DTVGLDNKMEELLDLLTE----G-------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQ 71 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~----~-------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 71 (243)
++.|-++.+++|.+.+.- + -..++-|.++|++|+|||+||+.+++ +...+| +.++. .+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~------~~ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLING------PE 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEH------HH
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEh------HH
Confidence 466788888888776532 2 13567899999999999999999999 444333 33322 11
Q ss_pred HHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 72 ILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 72 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
+ . ... .......+. ..+.......+.+|++|+++
T Consensus 274 l----~----sk~---~gese~~lr--~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 274 I----M----SKL---AGESESNLR--KAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp H----H----SSC---TTHHHHHHH--HHHHHHTTSCSEEEEEESGG
T ss_pred h----h----ccc---chHHHHHHH--HHHHHHHHcCCeEEEEehhc
Confidence 1 1 111 112223333 44455556678999999985
No 79
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.63 E-value=0.00035 Score=57.88 Aligned_cols=84 Identities=5% Similarity=0.042 Sum_probs=55.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccc--cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhh-hHHHH
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYY--FDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSE-MKKII 100 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~~~ 100 (243)
++.|.|++|+|||||+.+++. ..... -..++|++....++.. .+++++...... ...+.++. . +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l--~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRI--DM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHH--HH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHH--HH
Confidence 789999999999999988776 33333 2468899888777653 367777654321 22344554 4 33
Q ss_pred HHHH--h-CCCeEEEEEeCCCC
Q 045180 101 LHEY--L-MTKRYLIVLDNVWR 119 (243)
Q Consensus 101 l~~~--l-~~~~~LlvlDdv~~ 119 (243)
+... + +++.-|+|+|.+..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHHhhccCceEEEEecccc
Confidence 3332 3 45678999999854
No 80
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.59 E-value=2.7e-05 Score=64.06 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG------------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++|+++.++.+...+... ......+.++|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998887651 11345788999999999999999987
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.57 E-value=6e-05 Score=62.60 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=44.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe--CCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE--SLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
.+++.|+|++|+|||+||.+++. . ....++|++. ....+. ...+.+... +.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~--~---~G~~VlyIs~~~eE~v~~------------------~~~~le~~l--~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE--A---LGGKDKYATVRFGEPLSG------------------YNTDFNVFV--DDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH--H---HHTTSCCEEEEBSCSSTT------------------CBCCHHHHH--HHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH--h---CCCCEEEEEecchhhhhh------------------hhcCHHHHH--HHHH
Confidence 46778999999999999999887 3 1223556666 222110 012345555 6666
Q ss_pred HHhCCCeEEEEEeCCCC
Q 045180 103 EYLMTKRYLIVLDNVWR 119 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~ 119 (243)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 6666556 999999964
No 82
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.57 E-value=0.0003 Score=59.73 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
...++.|.|.+|+|||+||.+++. .....-..++|++.....+.. .++.++.+.... ...+.+++. +.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l--~~ 143 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQAL--EI 143 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHH--HH
Confidence 456899999999999999988876 333333478899988766643 244555432210 123445666 66
Q ss_pred HHHHhCC-CeEEEEEeCCC
Q 045180 101 LHEYLMT-KRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l~~-~~~LlvlDdv~ 118 (243)
+....+. ..-+||+|.+.
T Consensus 144 l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 144 MELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHHTTTCCSEEEEECTT
T ss_pred HHHHHhcCCCCEEEEeChH
Confidence 6665543 45589999884
No 83
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.54 E-value=0.0002 Score=56.10 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYD 75 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 75 (243)
..+++|.|++|+|||||+..++. .....-..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHH
Confidence 46899999999999999999886 2222222456665433 34444433
No 84
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.50 E-value=0.00039 Score=58.65 Aligned_cols=86 Identities=16% Similarity=0.094 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
...++.|.|.+|+||||||.+++. .....-..++|++.....+.. .++.++...... ...+.++.. +.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l--~~ 130 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQAL--EI 130 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHH--HH
Confidence 457899999999999999998876 333333467888887766543 245555432211 122445555 55
Q ss_pred HHHHhC-CCeEEEEEeCCC
Q 045180 101 LHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l~-~~~~LlvlDdv~ 118 (243)
+..... .+.-+||+|.+.
T Consensus 131 ~~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 131 ADMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHHTTTCCSEEEEECGG
T ss_pred HHHHHhcCCCCEEEEcChH
Confidence 554543 346699999984
No 85
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.47 E-value=0.00013 Score=65.24 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=33.1
Q ss_pred CcccchhhHHHHHHHHhc----CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTE----GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~----~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|-++....+.+.+.- .......++++|++|+||||||+.++.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 367777777766554331 122456899999999999999999987
No 86
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.46 E-value=0.00018 Score=67.79 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=36.1
Q ss_pred CcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.+..+..+...+... ......+.|+|++|+|||++|+.+++
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4689999998888877542 11235899999999999999999887
No 87
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.46 E-value=7.5e-05 Score=62.59 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCcccchhhHHHHHHHHhcC---CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG---PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~---~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++|.+..++.+...+... ......++++|++|+||||||+.+++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 35789888888887776542 22346789999999999999999988
No 88
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.46 E-value=0.0004 Score=54.89 Aligned_cols=93 Identities=6% Similarity=0.060 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC---cc----cccCh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY----YFDCHAWVEESLLYDADQILYDIIKFVMPSSR---LS----EIMEE 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~----~~~~~ 92 (243)
...++.|.|++|+|||||+..++....... .-..++|++.....+...+ ..+++.++.... +. ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 457999999999999999998876211111 1247888887765554443 334445543320 00 11122
Q ss_pred hh---hhHHHHHHHHhC-CCeEEEEEeCCCC
Q 045180 93 SS---EMKKIILHEYLM-TKRYLIVLDNVWR 119 (243)
Q Consensus 93 ~~---~~~~~~l~~~l~-~~~~LlvlDdv~~ 119 (243)
++ .. ..+.+.+. .+.-++|+|++..
T Consensus 102 ~~~~~~~--~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLL--YQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHH--HHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHH--HHHHHHHhcCCceEEEEeCchH
Confidence 22 22 33444443 4677999999853
No 89
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=0.00098 Score=56.01 Aligned_cols=93 Identities=6% Similarity=0.042 Sum_probs=55.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---c----cccC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSSNYVKY----YFDCHAWVEESLLYDADQILYDIIKFVMPSSRL---S----EIME 91 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~----~~~~ 91 (243)
....++.|.|.+|+|||+||..++....... .-..++|++....++...+.. ++..++..... . ...+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 3567999999999999999988876311111 124688999888767665543 34455443210 0 0111
Q ss_pred hh---hhhHHHHHHHHhC---CCeEEEEEeCCC
Q 045180 92 ES---SEMKKIILHEYLM---TKRYLIVLDNVW 118 (243)
Q Consensus 92 ~~---~~~~~~~l~~~l~---~~~~LlvlDdv~ 118 (243)
.+ ++. ..+...+. .+.-+||+|.+.
T Consensus 199 ~e~~~~ll--~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELL--DYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHH--HHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHH--HHHHHHHHhcCCCccEEEEechH
Confidence 22 233 34444443 456699999984
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.44 E-value=6.6e-05 Score=70.27 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=37.1
Q ss_pred CcccchhhHHHHHHHHhc-----------CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTE-----------GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~-----------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++.+++|.+.+.. .-.....|+|+|++|+||||||+.++.
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 578999999999888753 112456799999999999999999988
No 91
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.43 E-value=0.00013 Score=56.73 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.9
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 9 NKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 9 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+++|.+.+........+++|.|++|+|||||++.+..
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345566666654333568999999999999999998877
No 92
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.42 E-value=0.0002 Score=55.43 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHhcC-CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 6 GLDNKMEELLDLLTEG-PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~-~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|++.+++|.+.+... .....+++|.|++|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677888888888764 23568999999999999999998876
No 93
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.41 E-value=0.0007 Score=56.44 Aligned_cols=92 Identities=13% Similarity=0.090 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccc----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------ccccCh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYY----FDCHAWVEESLLYDADQILYDIIKFVMPSSRL-------SEIMEE 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 92 (243)
...++.|.|.+|+|||+||.+++........ -..++|++....++...+. +++..++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 4578999999999999999888762111110 2368899888876666554 344555543210 011122
Q ss_pred h---hhhHHHHHHHHhC--CCeEEEEEeCCC
Q 045180 93 S---SEMKKIILHEYLM--TKRYLIVLDNVW 118 (243)
Q Consensus 93 ~---~~~~~~~l~~~l~--~~~~LlvlDdv~ 118 (243)
+ ++. ..+...++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l--~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIV--DDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHH--HHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHH--HHHHHHHHhccCCCEEEEeCcH
Confidence 2 234 45555553 456799999984
No 94
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.41 E-value=0.0005 Score=58.14 Aligned_cols=86 Identities=13% Similarity=0.026 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
..+++.|.|.+|+||||||.+++. .....-..++|++.....+.. .+..++...... ...+.+++. +.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~--~~ 132 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQAL--EI 132 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHH--HH
Confidence 457899999999999999988876 333333468899887766643 244555432210 112334444 44
Q ss_pred HHHHhC-CCeEEEEEeCCC
Q 045180 101 LHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l~-~~~~LlvlDdv~ 118 (243)
++...+ .+.-+||+|.+.
T Consensus 133 ~~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 133 CDALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHHTCCSEEEEECGG
T ss_pred HHHHHhccCCCEEEEcCHH
Confidence 444432 445599999874
No 95
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.40 E-value=9.8e-05 Score=61.59 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=36.9
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|+++.+..+...+..+ .-+.++|++|+|||+||+.+++
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHH
Confidence 56899999999998888765 3588999999999999999987
No 96
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.37 E-value=0.00025 Score=65.86 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=36.6
Q ss_pred CCcccchhhHHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.++.++.+...+... ......+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 46889999998888877532 11234799999999999999999887
No 97
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.34 E-value=0.00019 Score=60.80 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=36.0
Q ss_pred CcccchhhHHHHHHHHh-------------cCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLT-------------EGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~-------------~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.+..++.+...+. ........+.++|++|+|||++|+.+++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 36899999999888883 1112346789999999999999999988
No 98
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.0007 Score=55.09 Aligned_cols=45 Identities=22% Similarity=0.123 Sum_probs=31.6
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.|-++..++|.+.+... -...+-++++|++|+||||||+.++.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4667777777776654211 01123399999999999999999987
No 99
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.28 E-value=0.00025 Score=62.64 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=37.2
Q ss_pred CCcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|+++.+..+...+..+ .-|.++|++|+|||+||+.+++
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHH
Confidence 46899999999998888776 4688999999999999999988
No 100
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.26 E-value=0.001 Score=55.26 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccc----------ccc----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVK----------YYF----DCHAWVEESLLYDADQILYDIIKFVMPSSRL--- 86 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~----------~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 86 (243)
...++.|.|.+|+|||+||.+++...... ..- ..++|++....++...+.. ++..++.+...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45799999999999999998887521111 111 4688998888776666553 34555543210
Q ss_pred ----ccccChh---hhhHHHHHHHHhC--CCeEEEEEeCCC
Q 045180 87 ----SEIMEES---SEMKKIILHEYLM--TKRYLIVLDNVW 118 (243)
Q Consensus 87 ----~~~~~~~---~~~~~~~l~~~l~--~~~~LlvlDdv~ 118 (243)
....+.+ ++. ..+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFA--EKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHH--HTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHH--HHHHHHHhhccCccEEEEECcH
Confidence 0111222 234 45555554 345699999984
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00019 Score=54.09 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|.|.|++|+||||+|+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.14 E-value=7.7e-05 Score=57.12 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++.++|+.|+||||++..+++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999966665
No 103
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.11 E-value=0.00038 Score=59.17 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=35.6
Q ss_pred CCcccchhhHHHHHHHHhc----------------------------CCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTE----------------------------GPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~----------------------------~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|.++.++.|...+.. .......+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4578999999888877720 011345688999999999999999988
No 104
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.09 E-value=0.00067 Score=55.71 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 22 PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 22 ~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+..+|+|.|++|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999988876
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.04 E-value=0.0031 Score=53.20 Aligned_cols=106 Identities=12% Similarity=0.059 Sum_probs=62.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCC-----cc-cccChhhhhHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSR-----LS-EIMEESSEMKK 98 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~-~~~~~~~~~~~ 98 (243)
...++|.|+.|+||||+.+.+.. .+.......+. .+.++... ..... +. .........
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g--~~~~~~~~~i~-t~ed~~e~-----------~~~~~~~~v~q~~~~~~~~~~~-- 186 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD--YLNNTKYHHIL-TIEDPIEF-----------VHESKKCLVNQREVHRDTLGFS-- 186 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH--HHHHHCCCEEE-EEESSCCS-----------CCCCSSSEEEEEEBTTTBSCHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHh--cccCCCCcEEE-EccCcHHh-----------hhhccccceeeeeeccccCCHH--
Confidence 35999999999999999998876 33322122222 22221110 00000 00 011112344
Q ss_pred HHHHHHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccccc
Q 045180 99 IILHEYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEIV 149 (243)
Q Consensus 99 ~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~~ 149 (243)
..+...|...+=+|++|...+.+.++.+.... ..|..||+|+-.....
T Consensus 187 ~~La~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 187 EALRSALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred HHHHHHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 78888899999999999998766665544442 2255688888775543
No 106
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.03 E-value=0.00055 Score=54.62 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 6 GLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+.+.++.+.+......+..|+|.|++|+||||+|+.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344445555555444333567899999999999999999876
No 107
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.03 E-value=0.0003 Score=52.46 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 108
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.02 E-value=0.00028 Score=59.02 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=32.5
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.+..+..+...+.... ..-+.|+|++|+|||++|+.+++
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHH
Confidence 58899887666555544331 23488999999999999999887
No 109
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.01 E-value=0.0038 Score=51.71 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
...++.|.|.+|+|||+||..++.+ ....-..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEECC--CCHHHHHHHHHHH
Confidence 4578999999999999999888763 22122467777765 4556666665543
No 110
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.00 E-value=0.00039 Score=52.24 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.00 E-value=0.00048 Score=52.42 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999987
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.99 E-value=0.0004 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEA 45 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~ 45 (243)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 113
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.98 E-value=0.002 Score=52.96 Aligned_cols=86 Identities=9% Similarity=0.032 Sum_probs=45.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc-ccceeEEEEeCC-CCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY-YFDCHAWVEESL-LYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIIL 101 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 101 (243)
+.++++++|.+|+||||++..++. .... .-..+..+.... .....+.+....+..+.+.. ...+...+. ..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~--~al 177 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQ--QAK 177 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHH--HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHH--HHH
Confidence 467999999999999999988876 3331 212344555433 22333334443433433322 112223333 333
Q ss_pred HHHhCCCeEEEEEeCC
Q 045180 102 HEYLMTKRYLIVLDNV 117 (243)
Q Consensus 102 ~~~l~~~~~LlvlDdv 117 (243)
.. + .+.=++++|-.
T Consensus 178 ~~-~-~~~dlvIiDT~ 191 (296)
T 2px0_A 178 EL-F-SEYDHVFVDTA 191 (296)
T ss_dssp HH-G-GGSSEEEEECC
T ss_pred HH-h-cCCCEEEEeCC
Confidence 32 3 33447788843
No 114
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.95 E-value=0.00093 Score=54.72 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++.|.|++|+||||+|+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999876
No 115
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.95 E-value=0.00043 Score=53.33 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|.|.|++|+||||+++.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 116
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.94 E-value=0.00041 Score=55.50 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=31.6
Q ss_pred CcccchhhHHHHHHHHhc---C-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTE---G-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~---~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++...++.+.... . -.-.+-+.|+|++|+|||||++.++.
T Consensus 17 ~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 17 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 578887776666554321 1 01123389999999999999999987
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.92 E-value=0.011 Score=51.21 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988775
No 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.90 E-value=0.00047 Score=52.24 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.|.|.|++|+||||+|+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999887
No 119
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.89 E-value=0.0012 Score=55.05 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 6 GLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
|-...+..+...+... ...+.+++|.|++|+|||||++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4444455555555443 34577999999999999999988765
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.88 E-value=0.005 Score=50.85 Aligned_cols=90 Identities=11% Similarity=-0.025 Sum_probs=47.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH--HHHHHHHHHHhCCCCCcc-cccChhhh-hHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDA--DQILYDIIKFVMPSSRLS-EIMEESSE-MKKI 99 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~~-~~~~~~~~-~~~~ 99 (243)
...+++|+|++|+||||++..++. .....-..+..+.... +.. .+-+...++..+.+.... ...+...+ . .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~g~kV~lv~~D~-~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~--~ 177 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDEGKSVVLAAADT-FRAAAIEQLKIWGERVGATVISHSEGADPAAVAF--D 177 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHTTCCEEEEEECT-TCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHH--H
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhcCCEEEEEcccc-ccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH--H
Confidence 468999999999999999998887 3333222344555432 222 122333444444322100 11111111 2 3
Q ss_pred HHHHHhCCCeEEEEEeCCC
Q 045180 100 ILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 100 ~l~~~l~~~~~LlvlDdv~ 118 (243)
.+...+....-++++|-.-
T Consensus 178 al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 178 AVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHhcCCCEEEEECCC
Confidence 3444444445578888664
No 121
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.88 E-value=0.0031 Score=52.82 Aligned_cols=51 Identities=18% Similarity=0.044 Sum_probs=35.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
...++.|.|.+|+|||+||..++.+ ....-..++|++.. .+..++...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHH
Confidence 4578999999999999999888773 32222356676653 455666666544
No 122
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00065 Score=51.49 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++++|.|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 123
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.86 E-value=0.00073 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+||||+++.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999887
No 124
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.85 E-value=0.00092 Score=50.13 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.84 E-value=0.00066 Score=51.63 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999877
No 126
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.82 E-value=0.0006 Score=55.39 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=32.0
Q ss_pred CcccchhhHHHHHHHHhcC----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++...++.+....- -.-.+-+.|+|++|+|||||++.++.
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHH
Confidence 5788887777665543210 01122389999999999999999987
No 127
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.80 E-value=0.00076 Score=58.55 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=35.8
Q ss_pred CCcccchhhHHHHHHHHhcC------------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEG------------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~------------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.++....|...+... +...+-+.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46789998888887776321 11345688999999999999999887
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.80 E-value=0.00057 Score=51.10 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999877
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.80 E-value=0.0036 Score=52.72 Aligned_cols=94 Identities=9% Similarity=0.071 Sum_probs=53.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccccc----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-------c---c
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYF----DCHAWVEESLLYDADQILYDIIKFVMPSSRLS-------E---I 89 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~---~ 89 (243)
...++.|.|++|+|||||+..++......... ..++|++....+.... +..+++..+...... . .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56899999999999999999887621111111 2458888766543333 333444443221100 0 0
Q ss_pred cChhhhhHHHHHHHHhC------CCeEEEEEeCCCCc
Q 045180 90 MEESSEMKKIILHEYLM------TKRYLIVLDNVWRI 120 (243)
Q Consensus 90 ~~~~~~~~~~~l~~~l~------~~~~LlvlDdv~~~ 120 (243)
....++. ..+...+. .+.-+||+|.+...
T Consensus 209 ~~~~~~l--~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLV--QQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHH--HHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHH--HHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1112334 44555553 46779999998543
No 130
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.78 E-value=0.00049 Score=52.71 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
|.|.|+|++|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 131
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.78 E-value=0.00085 Score=52.09 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 357899999999999999999987
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.77 E-value=0.0044 Score=53.13 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=51.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc----ccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------ccccCh
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY----YFDCHAWVEESLLYDADQILYDIIKFVMPSSRL-------SEIMEE 92 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 92 (243)
...++.|.|++|+|||||+..++-...... .-..++|++....+....+ ..+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 457999999999999999997652111111 2235888887766555443 3456666543210 011111
Q ss_pred ---hhhhHHHHHHHHhC-CCeEEEEEeCCC
Q 045180 93 ---SSEMKKIILHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 93 ---~~~~~~~~l~~~l~-~~~~LlvlDdv~ 118 (243)
.+.. ..+...+. .+.-+||+|.+.
T Consensus 256 ~~~~~~l--~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLL--DAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHH--HHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHH--HHHHHHHHhcCCceEEecchh
Confidence 1222 33333332 456799999874
No 133
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.77 E-value=0.0036 Score=63.35 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
+.+.+.|+|++|+|||+||.++.. .....-..+.|+++....+... ++.++.+.... ...+.++.. +.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l--~~ 1496 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQAL--EI 1496 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHH--HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHH--HH
Confidence 467999999999999999999877 4443434677887777665544 45555332211 122334555 55
Q ss_pred HHHHhC-CCeEEEEEeCCC
Q 045180 101 LHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l~-~~~~LlvlDdv~ 118 (243)
++...+ .+.-+||+|.+.
T Consensus 1497 ~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1497 CDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCCCEEEEcChh
Confidence 555543 466799999984
No 134
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.77 E-value=0.00053 Score=52.82 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 135
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.76 E-value=0.00091 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999998876
No 136
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00075 Score=51.19 Aligned_cols=22 Identities=9% Similarity=0.136 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..|.|.|++|+||||+|+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 137
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.75 E-value=0.00089 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999877
No 138
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.74 E-value=0.0088 Score=52.80 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=35.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccc-cceeEEEEeCCCCCHHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
...++.|.|.+|+|||+||.+++. ..... -..++|++... +..++...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~--~~a~~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQAL--QWGTAMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHH--HHTTTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHH--HHHHhcCCcEEEEeccC--CHHHHHHHHHH
Confidence 456899999999999999988877 33322 23577776644 45666665543
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.74 E-value=0.00078 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.210 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999887
No 140
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.0022 Score=49.40 Aligned_cols=23 Identities=17% Similarity=-0.009 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|+|.|++|+||||+|+.+.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 141
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.00087 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 142
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.73 E-value=0.0084 Score=49.27 Aligned_cols=38 Identities=18% Similarity=-0.004 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEES 64 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 64 (243)
..++++.|.+|+||||++..++. .....-..+.++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~--~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY--FYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEecC
Confidence 67999999999999999988876 333222245555544
No 143
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.73 E-value=0.00087 Score=53.65 Aligned_cols=24 Identities=4% Similarity=0.105 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.+|+|.|++|+||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998876
No 144
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.73 E-value=0.0014 Score=52.51 Aligned_cols=25 Identities=16% Similarity=0.032 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....++.|.|++|+||||+|+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999876
No 145
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.72 E-value=0.0056 Score=52.97 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++++.++|++|+||||++..++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 146
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.71 E-value=0.0011 Score=51.21 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|++|+||||+++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999887
No 147
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.70 E-value=0.00071 Score=52.29 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++++|.|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 148
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.70 E-value=0.00071 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.|.|.|++|+||||+++.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999886
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.70 E-value=0.001 Score=51.47 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998877
No 150
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.69 E-value=0.0086 Score=49.92 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|+.|+||||++..++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999988876
No 151
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.68 E-value=0.0011 Score=50.99 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 152
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.68 E-value=0.0011 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+|+|.|+.|+||||+++.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999887
No 153
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.68 E-value=0.00087 Score=49.96 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999877
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.67 E-value=0.0012 Score=49.70 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47899999999999999996543
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.67 E-value=0.0011 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+|+|.|++|+||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999876
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.66 E-value=0.00082 Score=51.17 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|.|++|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999886
No 157
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.66 E-value=0.0023 Score=48.67 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|+|.|+.|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 158
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.65 E-value=0.0011 Score=50.43 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|+|.|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999877
No 159
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.65 E-value=0.001 Score=50.68 Aligned_cols=23 Identities=9% Similarity=0.134 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|++|+||||+|+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 160
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.63 E-value=0.0023 Score=57.88 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++.
T Consensus 42 ~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhc
Confidence 4789988888888887766 4789999999999999999987
No 161
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.63 E-value=0.001 Score=53.35 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.|++|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 162
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.63 E-value=0.00072 Score=50.99 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 163
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.62 E-value=0.0022 Score=50.01 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.+...+... ....|+|.|.+|+|||||+.++..
T Consensus 26 a~~~r~~~~~~--~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 26 ADKNRKLLNKH--GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp HHHHHHHHHHT--TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34444444333 567889999999999999998876
No 164
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.60 E-value=0.0012 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|++.|++|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.59 E-value=0.0012 Score=53.05 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999877
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.59 E-value=0.0013 Score=49.94 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999875
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.57 E-value=0.0011 Score=50.57 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|++|+||||+|+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999877
No 168
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.57 E-value=0.0023 Score=53.15 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
+.++|+|.|-||+||||.+.-++. .....-..+.-+++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~--aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHH--HHHHCCCeEEEEecCC
Confidence 679999999999999999877665 3333333566667664
No 169
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.57 E-value=0.0014 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.|++|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 170
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.56 E-value=0.0012 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|+|.|++|+||||+++.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 588999999999999999887
No 171
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.55 E-value=0.0033 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|++|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 172
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.55 E-value=0.0012 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 173
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.54 E-value=0.0018 Score=54.48 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=31.2
Q ss_pred ccchhhHHHHHHHHhcC--CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 5 VGLDNKMEELLDLLTEG--PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 5 vGR~~~~~~l~~~L~~~--~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
|+-+.-.+++.+.+... ......+.|.|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 44555666676666432 22456689999999999999998876
No 174
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.53 E-value=0.00089 Score=50.31 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..|.|.|++|+||||+|+.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999887
No 175
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.53 E-value=0.0016 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999877
No 176
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.53 E-value=0.02 Score=49.63 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHHHHHHHhcC-------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 11 MEELLDLLTEG-------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 11 ~~~l~~~L~~~-------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.+.|... ...+++|.++|.+|+||||++..++.
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44556666432 12468999999999999999988876
No 177
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.53 E-value=0.0013 Score=49.75 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|++|+||||+|+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 178
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.51 E-value=0.0012 Score=50.94 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.++|+|++|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999998875
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.50 E-value=0.0011 Score=49.51 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999877
No 180
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.50 E-value=0.00096 Score=62.10 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=54.8
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQ 71 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 71 (243)
++.|.++..++|.+.+... -..++-+.++|++|+|||.+|+.+++ +....| +.+ +..+
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f-----~~v----~~~~ 546 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF-----ISI----KGPE 546 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE-----EEC----CHHH
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce-----EEe----ccch
Confidence 3557777777777665432 12356688999999999999999998 443332 222 2122
Q ss_pred HHHHHHHHhCCCCCcccccChhhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 72 ILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 72 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
++....+ .+...+. +.+...-+..+++|++|+++
T Consensus 547 ----l~s~~vG-------ese~~vr--~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 547 ----LLTMWFG-------ESEANVR--EIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp ----HHTTTCS-------SCHHHHH--HHHHHHHTTCSEEEECSCGG
T ss_pred ----hhccccc-------hHHHHHH--HHHHHHHHcCCceeechhhh
Confidence 2222111 1223333 33444445678999999985
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.50 E-value=0.0013 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998876
No 182
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.50 E-value=0.00097 Score=50.46 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999877
No 183
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.49 E-value=0.0015 Score=50.43 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+.++|+|++|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999876
No 184
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.49 E-value=0.0018 Score=49.15 Aligned_cols=24 Identities=25% Similarity=0.102 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|.|.|++|+||||+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999887
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.49 E-value=0.0035 Score=52.86 Aligned_cols=37 Identities=19% Similarity=0.076 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++.+.+.....+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3445555554344678999999999999999988765
No 186
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.49 E-value=0.0016 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+|||||++.+++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999984
No 187
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.48 E-value=0.0023 Score=49.71 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 9 NKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 9 ~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+.+.+.+... +...++|.|.+|+|||||+..+..
T Consensus 16 ~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 16 RLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHH
Confidence 3444444444333 568999999999999999998876
No 188
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.47 E-value=0.0015 Score=50.47 Aligned_cols=23 Identities=4% Similarity=-0.058 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|++|+||||+++.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 189
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.47 E-value=0.0019 Score=51.37 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998866
No 190
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.47 E-value=0.0014 Score=50.54 Aligned_cols=24 Identities=4% Similarity=-0.176 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|++|+||||+++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 191
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.46 E-value=0.028 Score=44.17 Aligned_cols=20 Identities=35% Similarity=0.288 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEA 45 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~ 45 (243)
+.+.+.|+.|+|||++....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 68899999999999866443
No 192
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.45 E-value=0.0019 Score=50.69 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++|.|.|++|+||||.|..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999998887
No 193
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.44 E-value=0.002 Score=53.36 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....+++|.|++|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999998876
No 194
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.43 E-value=0.0017 Score=48.26 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999877
No 195
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.41 E-value=0.013 Score=51.10 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=34.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc-ccceeEEEEeCCCCCHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY-YFDCHAWVEESLLYDADQILYDII 77 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i~ 77 (243)
...++.|.|.+|+|||||+..++. .+.. .-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~--~~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ--NVATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH--HHHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH--HHHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 456899999999999999998887 3322 122577776543 4455555543
No 196
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.40 E-value=0.012 Score=49.93 Aligned_cols=106 Identities=12% Similarity=0.128 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeE-EEEeCCCCCHHHHHHHHHHHhCCCCC-ccc---ccChhhhhHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHA-WVEESLLYDADQILYDIIKFVMPSSR-LSE---IMEESSEMKK 98 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~---~~~~~~~~~~ 98 (243)
...+++|+|+.|+||||+...+.. .+.....+.+ .+.- +... .+..... ... ..+.....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~--~~~~~~~g~I~~~e~--~~e~---------~~~~~~~~v~Q~~~g~~~~~~~-- 199 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIED--PIEY---------VFKHKKSIVNQREVGEDTKSFA-- 199 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH--HHHHHSCCEEEEEES--SCCS---------CCCCSSSEEEEEEBTTTBSCSH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh--hcCcCCCcEEEEecc--cHhh---------hhccCceEEEeeecCCCHHHHH--
Confidence 357899999999999999998877 3332212333 3321 1110 0000000 000 01223445
Q ss_pred HHHHHHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 99 IILHEYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 99 ~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
..+...+...+-+|++|.+.+.+......... ..|..|+.|+-...
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 77888888778899999997665544433332 23556777776544
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.40 E-value=0.0084 Score=46.64 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=35.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccc--c--ccceeEEEEeCCCCCHHHHHHHHHHHhC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVK--Y--YFDCHAWVEESLLYDADQILYDIIKFVM 81 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~--~--~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 81 (243)
...+++|.|++|+|||||++.++...... . .-...+|+.......... +..+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 45799999999999999999887511111 0 123577877655444332 334444443
No 198
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.40 E-value=0.0038 Score=53.13 Aligned_cols=42 Identities=12% Similarity=-0.109 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccc-cc-eeEEEEeCCCC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYY-FD-CHAWVEESLLY 67 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~-F~-~~~wv~~~~~~ 67 (243)
..+.++|+|++|+|||||++.+.+ .+... -+ .++++-+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSEEEEEEESSCH
T ss_pred CCcEEEEecCCCCChhHHHHHHHH--HHhhcCCCeeEEEEEecCCh
Confidence 346799999999999999998877 33321 12 23356666543
No 199
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.40 E-value=0.002 Score=49.46 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|+|.|+.|+||||+++.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999988
No 200
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.40 E-value=0.0016 Score=51.09 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 201
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.39 E-value=0.002 Score=48.84 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.|+.|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.39 E-value=0.0091 Score=60.53 Aligned_cols=86 Identities=13% Similarity=0.027 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
...++.|.|++|+||||||.+++. .....-..++|++.....+.. .++.++.+.... ...+.+++. +.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il--~~ 452 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQAL--EI 452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHH--HH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHH--HH
Confidence 457999999999999999999887 443333468888877766643 255666543221 233455666 66
Q ss_pred HHHHh-CCCeEEEEEeCCC
Q 045180 101 LHEYL-MTKRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l-~~~~~LlvlDdv~ 118 (243)
++... ....-+||+|.+.
T Consensus 453 ~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 453 CDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHhcCCcEEEECCHH
Confidence 65444 2456699999884
No 203
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.38 E-value=0.0021 Score=49.75 Aligned_cols=23 Identities=13% Similarity=0.029 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998875
No 204
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.38 E-value=0.0019 Score=50.40 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|.|.|++|+||||+|+.+++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999877
No 205
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.37 E-value=0.0022 Score=52.23 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++.+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998873
No 206
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.37 E-value=0.0031 Score=48.92 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 11 MEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 11 ~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+..++..- +....+.++|++|+|||++|..+++
T Consensus 45 ~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 45 LGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp HHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 2345799999999999999988887
No 207
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.36 E-value=0.0099 Score=51.83 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccc-ccccceeEEEEeCCCCC-HHHHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYV-KYYFDCHAWVEESLLYD-ADQILYDIIKF 79 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~F~~~~wv~~~~~~~-~~~~~~~i~~~ 79 (243)
-+.++|.|.+|+|||+|+..+.+ .+ +.+-+.++++-+..... ..+++.++...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 46789999999999999998887 33 23345567777776543 45566666654
No 208
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.36 E-value=0.0061 Score=53.17 Aligned_cols=50 Identities=8% Similarity=0.132 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccccc-ceeEEEEeCCCCC-HHHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYF-DCHAWVEESLLYD-ADQILYDII 77 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F-~~~~wv~~~~~~~-~~~~~~~i~ 77 (243)
+.++|+|.+|+|||||+..+.. .....+ +..+++.++...+ ..+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~--~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIH--NIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHH--HHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHh--hhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 4688999999999999999887 333222 3455666666542 334444443
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.35 E-value=0.03 Score=48.59 Aligned_cols=52 Identities=17% Similarity=-0.003 Sum_probs=36.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc-ccceeEEEEeCCCCCHHHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY-YFDCHAWVEESLLYDADQILYDIIKF 79 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i~~~ 79 (243)
...++.|.|.+|+|||+||..++. .+.. .-..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~--~~a~~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQ--NAALKEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 457899999999999999988877 3322 12357777664 3556666666543
No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.35 E-value=0.002 Score=49.47 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|+.|+||||+++.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 211
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.35 E-value=0.0099 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++++.|.+|+||||++..++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988876
No 212
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.35 E-value=0.0051 Score=50.79 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999998876
No 213
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.34 E-value=0.0018 Score=50.68 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|+|++|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998876
No 214
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.33 E-value=0.0019 Score=50.10 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 215
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.33 E-value=0.0028 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 216
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.32 E-value=0.018 Score=47.95 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccc--ChhhhhHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS-EIM--EESSEMKKIILH 102 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~--~~~~~~~~~~l~ 102 (243)
..++|.|+.|+|||||++.+.. .+.. -.+.+.+.-....... ..... ... ...... ..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g--~~~~-~~g~i~i~~~~e~~~~------------~~~~~i~~~~ggg~~~r--~~la 234 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME--FIPK-EERIISIEDTEEIVFK------------HHKNYTQLFFGGNITSA--DCLK 234 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG--GSCT-TSCEEEEESSCCCCCS------------SCSSEEEEECBTTBCHH--HHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC--CCcC-CCcEEEECCeeccccc------------cchhEEEEEeCCChhHH--HHHH
Confidence 5899999999999999999887 3322 2344444422211100 00000 000 112233 6677
Q ss_pred HHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcc
Q 045180 103 EYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRI 146 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~ 146 (243)
..+..++-++++|.+.+.+.++.+... .. + +..+|+||-..
T Consensus 235 ~aL~~~p~ilildE~~~~e~~~~l~~~-~~-g-~~tvi~t~H~~ 275 (330)
T 2pt7_A 235 SCLRMRPDRIILGELRSSEAYDFYNVL-CS-G-HKGTLTTLHAG 275 (330)
T ss_dssp HHTTSCCSEEEECCCCSTHHHHHHHHH-HT-T-CCCEEEEEECS
T ss_pred HHhhhCCCEEEEcCCChHHHHHHHHHH-hc-C-CCEEEEEEccc
Confidence 778888889999999776555544333 21 1 22366666543
No 217
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.32 E-value=0.0024 Score=50.11 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999876
No 218
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.31 E-value=0.0017 Score=50.76 Aligned_cols=24 Identities=13% Similarity=-0.122 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|.|.|++|+||||+++.+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999887
No 219
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.31 E-value=0.0068 Score=50.36 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEe
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEE 63 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~ 63 (243)
..++++|+|.+|+||||++..++. .....-..+..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeC
Confidence 568999999999999999988876 33332223445544
No 220
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.30 E-value=0.0023 Score=48.16 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++.|.|.+|+|||||+..+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999887
No 221
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.29 E-value=0.0026 Score=47.85 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999877
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.0026 Score=50.95 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|++|+||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 223
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.26 E-value=0.0022 Score=49.80 Aligned_cols=21 Identities=10% Similarity=0.060 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 224
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.26 E-value=0.0087 Score=59.86 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
..+++.|.|.+|+||||||.+++. .....-..++|++.....+.. .++.++.+.... ...+.+++. +.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l--~~ 452 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQAL--EI 452 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHH--HH
Confidence 467999999999999999998877 333333478888887776653 255666543211 223445555 55
Q ss_pred HHHHh-CCCeEEEEEeCCCC
Q 045180 101 LHEYL-MTKRYLIVLDNVWR 119 (243)
Q Consensus 101 l~~~l-~~~~~LlvlDdv~~ 119 (243)
++... ..+.-++|+|.+..
T Consensus 453 l~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 453 CDALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHHTCCSEEEESCSTT
T ss_pred HHHHHHhcCCCEEEECCHHH
Confidence 55444 24556999999854
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.22 E-value=0.0029 Score=49.08 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|.|.|++|+||||+++.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999877
No 226
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.21 E-value=0.0037 Score=49.25 Aligned_cols=48 Identities=17% Similarity=0.035 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYD 75 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 75 (243)
...++.|.|++|+||||||.+++. .....-..++|++... +..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccC--CHHHHHHH
Confidence 346899999999999999988765 2222223677777554 33444333
No 227
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.21 E-value=0.0036 Score=46.51 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 228
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.20 E-value=0.0012 Score=51.16 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 229
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.16 E-value=0.013 Score=52.58 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.|.|++|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 6889999999999999988876
No 230
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.15 E-value=0.023 Score=49.79 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=38.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccc-ccccceeEEEEeCCCCC-HHHHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYV-KYYFDCHAWVEESLLYD-ADQILYDIIKF 79 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~-~~~F~~~~wv~~~~~~~-~~~~~~~i~~~ 79 (243)
-+.++|.|.+|+|||+|+..+.+ .+ +.+-+.++++-+..... ..+++.++...
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CCeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 45689999999999999998887 43 23456778888877654 45666666553
No 231
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.15 E-value=0.0061 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|+|.|++|+||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 232
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.14 E-value=0.0085 Score=46.11 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
.|+|-|.-|+||||.++.+++ ........++...-.......+....++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 478899999999999999988 55544334444444333344445555443
No 233
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.11 E-value=0.016 Score=47.50 Aligned_cols=39 Identities=18% Similarity=0.012 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEES 64 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 64 (243)
..++++++|.+|+||||++..++. .....-..+.++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEecCC
Confidence 457999999999999999998887 333322234455543
No 234
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.11 E-value=0.0034 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 357899999999999999998873
No 235
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.11 E-value=0.0058 Score=50.19 Aligned_cols=41 Identities=10% Similarity=-0.045 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
..++|+|+|-||+||||+|..++. .....-..++-++....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~--~La~~G~~VlliD~D~~ 80 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSA--AFSILGKRVLQIGCDPK 80 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEESSS
T ss_pred CceEEEEECCCCccHHHHHHHHHH--HHHHCCCeEEEEeCCCC
Confidence 578999999999999999988776 33333235666666543
No 236
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.10 E-value=0.0067 Score=51.57 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 557999999999999999999886
No 237
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.09 E-value=0.0016 Score=53.38 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+|+|.|++|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.09 E-value=0.0022 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHh-c
Q 045180 25 LSVVAILDSIGLDKTAFAVEAY-S 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~-~ 47 (243)
..+++|.|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999988 5
No 239
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.08 E-value=0.0071 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|+.|+||||++..++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999988865
No 240
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.07 E-value=0.0062 Score=46.20 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHh
Q 045180 28 VAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFV 80 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 80 (243)
+.|+|.+|+|||++|.+++.. . ..++++.-...++ .+....|...-
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~---~---~~~~yiaT~~~~d-~e~~~rI~~h~ 47 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD---A---PQVLYIATSQILD-DEMAARIQHHK 47 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS---C---SSEEEEECCCC-------CHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc---C---CCeEEEecCCCCC-HHHHHHHHHHH
Confidence 689999999999999998873 1 2355565544443 33444454443
No 241
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.07 E-value=0.0032 Score=48.35 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+|+|.|++|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999877
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.05 E-value=0.0037 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|++|+||||++..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999988875
No 243
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.04 E-value=0.0041 Score=51.98 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.|.|+.|+|||+||..+++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999988
No 244
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.03 E-value=0.0036 Score=51.18 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.02 E-value=0.0059 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.|+.|+|||||.+.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998875
No 246
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0025 Score=51.05 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..|+|.|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999887
No 247
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.99 E-value=0.012 Score=45.80 Aligned_cols=23 Identities=13% Similarity=-0.088 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|.+.|+.|+||||++..+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 248
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.98 E-value=0.0042 Score=48.97 Aligned_cols=24 Identities=17% Similarity=0.046 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|.|.|++|+||||+|+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999887
No 249
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.98 E-value=0.0079 Score=48.52 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=26.3
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+|....+....+.++|++|+|||.+|..+++
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 4555554423456799999999999999999887
No 250
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.97 E-value=0.0041 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|.|+|++|+||||+|+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999887
No 251
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.96 E-value=0.0046 Score=49.00 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999875
No 252
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.94 E-value=0.014 Score=47.60 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccc-eeEEEEeC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFD-CHAWVEES 64 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~-~~~wv~~~ 64 (243)
...+++|.|.+|+|||||+..++. .....-. .++++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~--~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL--QWGTAMGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH--HHHHTSCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH--HHHHHcCCeEEEEeCc
Confidence 346899999999999999998876 3322212 45566543
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.94 E-value=0.004 Score=48.78 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 254
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.94 E-value=0.004 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.|++|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 255
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.93 E-value=0.0041 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.93 E-value=0.0022 Score=48.29 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
++++|+|.+|+|||||+..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998877
No 257
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.93 E-value=0.0038 Score=48.47 Aligned_cols=21 Identities=14% Similarity=-0.035 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999877
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.91 E-value=0.0044 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++++|.|.+|+|||||+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999998887
No 259
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.0029 Score=57.15 Aligned_cols=46 Identities=20% Similarity=0.067 Sum_probs=33.1
Q ss_pred CCcccchhhHHHHHHHHhcCCC---------CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 2 RDTVGLDNKMEELLDLLTEGPP---------QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 2 ~~~vGR~~~~~~l~~~L~~~~~---------~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.++|.++....+...|..+.. +..-|.++|++|+|||+||+.+++
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSST
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHH
Confidence 4678888877666555544310 011588999999999999999887
No 260
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.88 E-value=0.0041 Score=48.42 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999877
No 261
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.88 E-value=0.01 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|+.|+||||++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 467999999999999999988875
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.88 E-value=0.014 Score=58.46 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=62.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---cccChhhhhHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLS---EIMEESSEMKKII 100 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~ 100 (243)
+-++|-|+|+.|+||||||.++.. +.+..-...+|+++....+..- ++.+|.+...- ...+.++.. +.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l--~~ 1500 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQAL--EI 1500 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHH--HH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHH--HH
Confidence 568999999999999999999887 5555566788888877776543 77888775532 223335566 66
Q ss_pred HHHHhC-CCeEEEEEeCCC
Q 045180 101 LHEYLM-TKRYLIVLDNVW 118 (243)
Q Consensus 101 l~~~l~-~~~~LlvlDdv~ 118 (243)
+...++ +..-++|+|-|.
T Consensus 1501 ~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1501 CDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHTCCSEEEESCST
T ss_pred HHHHHHcCCCCEEEEccHH
Confidence 666664 456699999884
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.87 E-value=0.0052 Score=48.90 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999875
No 264
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.85 E-value=0.0053 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|+|.|+.|+|||+||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999877
No 265
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.84 E-value=0.0063 Score=49.04 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL-YDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
...+++|+|+.|+|||||.+.+.. .+...+.+.+.+.-... +-.... + .+. ... .-..+...+. ..+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g--~~~~~~~G~I~~~g~~i~~~~~~~---~--~~v-~q~-~~gl~~~~l~--~~la 92 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID--YINQTKSYHIITIEDPIEYVFKHK---K--SIV-NQR-EVGEDTKSFA--DALR 92 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH--HHHHHCCCEEEEEESSCCSCCCCS---S--SEE-EEE-EBTTTBSCHH--HHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH--hCCCCCCCEEEEcCCcceeecCCc---c--eee-eHH-HhCCCHHHHH--HHHH
Confidence 357999999999999999998876 33222233333322110 000000 0 000 000 0000112334 6667
Q ss_pred HHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCcccc
Q 045180 103 EYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIEI 148 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~~ 148 (243)
..+..++-++++|...+.+....+.... ..|..|++||-+...
T Consensus 93 ~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 93 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 7776677789999997554443333222 235668888876543
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.84 E-value=0.0059 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.|.|.|++|+|||+||.++.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999887
No 267
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.83 E-value=0.063 Score=47.35 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|+|+|.+|+||||++..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988874
No 268
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.80 E-value=0.0066 Score=53.65 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=30.9
Q ss_pred cccchhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 4 TVGLDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 4 ~vGR~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.|.+..+.+.+..........+|.+.|++|+||||+|+.+.+
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHH
Confidence 34455555555554422223457899999999999999999988
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.80 E-value=0.0061 Score=48.35 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999877
No 270
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.79 E-value=0.005 Score=47.80 Aligned_cols=81 Identities=14% Similarity=0.196 Sum_probs=45.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHH----------hCCCCCcccccChhhhh
Q 045180 27 VVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKF----------VMPSSRLSEIMEESSEM 96 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~----------l~~~~~~~~~~~~~~~~ 96 (243)
+|.|.|++|+||+|.|..+++ + | ....+ +..+++++-+.. ..... ...+.+-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~--~----~-g~~~i------stGdllR~~i~~~t~lg~~~~~~~~~G---~lvpd~iv~ 65 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK--E----K-GFVHI------STGDILREAVQKGTPLGKKAKEYMERG---ELVPDDLII 65 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--H----H-CCEEE------EHHHHHHHHHHHTCHHHHHHHHHHHHT---CCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--H----H-CCeEE------cHHHHHHHHHHhcChhhhhHHHHHhcC---CcCCHHHHH
Confidence 577899999999999999887 2 2 12233 233444433221 00000 122334455
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCc-chhhHH
Q 045180 97 KKIILHEYLMTKRYLIVLDNVWRI-SVWDVI 126 (243)
Q Consensus 97 ~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~l 126 (243)
..+.+.+..... +|||..-.. .+.+.+
T Consensus 66 --~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 66 --ALIEEVFPKHGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp --HHHHHHCCSSSC-EEEESCCCSHHHHHHH
T ss_pred --HHHHHhhccCCc-eEecCCchhHHHHHHH
Confidence 677777766544 688998543 444444
No 271
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.78 E-value=0.0052 Score=48.31 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998875
No 272
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.78 E-value=0.0094 Score=50.71 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++.|..-. +.+.++|.|.+|+|||+|+..+++
T Consensus 164 raID~l~Pig-rGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 164 RLIDLFAPIG-KGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHHHHSCCB-TTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhhhhccccc-CCceEEEecCCCCChhHHHHHHHH
Confidence 4455555432 345789999999999999988887
No 273
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.77 E-value=0.0054 Score=50.97 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.|.|++|+||||||..+++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 274
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.76 E-value=0.013 Score=48.94 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++.+.|.||+||||+|..++.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 467888899999999999987765
No 275
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.76 E-value=0.0063 Score=49.05 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 276
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.75 E-value=0.0048 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.|+.|+|||||++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 3689999999999999988876
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.74 E-value=0.0073 Score=48.06 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999875
No 278
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.71 E-value=0.013 Score=49.33 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+++.+.|.||+||||+|..++.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 568999999999999999977665
No 279
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.69 E-value=0.0063 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++.|.|+.|+|||+||..+++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999886
No 280
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.69 E-value=0.014 Score=51.35 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|.+|+|||||+..++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 467999999999999999998876
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.67 E-value=0.0073 Score=48.75 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 456899999999999999999875
No 282
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.65 E-value=0.0076 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..++.+.|.||+||||++..++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567889999999999999998875
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0081 Score=45.31 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4557899999999999999988763
No 284
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.65 E-value=0.0063 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 467999999999999999998877
No 285
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.64 E-value=0.0067 Score=45.65 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
-|+|.|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 286
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.64 E-value=0.0067 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999875
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.63 E-value=0.012 Score=48.57 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|++|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 457899999999999999988765
No 288
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.62 E-value=0.013 Score=46.95 Aligned_cols=38 Identities=18% Similarity=-0.010 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
++|+|.|-||+||||+|..++. .....-..++-++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~--~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS--GLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH--HHHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHH--HHHHCCCcEEEEcCCC
Confidence 5788899999999999988776 3333323456666554
No 289
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.62 E-value=0.0067 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999875
No 290
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.62 E-value=0.0087 Score=44.13 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.61 E-value=0.0076 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999876
No 292
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.61 E-value=0.015 Score=45.61 Aligned_cols=53 Identities=9% Similarity=-0.064 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc--ccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY--YFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~--~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
....|.+.|+.|+||||+++.+.+ .... .++......-.......+.+++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~--~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE--YLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH--HHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 567899999999999999999988 4433 3333331222222233444555554
No 293
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.60 E-value=0.012 Score=47.73 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
.++|+|.|-||+||||+|..++. .....-..++-++....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~--~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA--ALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH--HHHHCCCeEEEEecCCC
Confidence 46888899999999999988876 33322224566665543
No 294
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.59 E-value=0.0073 Score=47.76 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|+|.|..|+||||+++.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 295
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.59 E-value=0.011 Score=44.34 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998864
No 296
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.58 E-value=0.0082 Score=48.23 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 297
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.58 E-value=0.03 Score=43.56 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHE 103 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 103 (243)
...+..++|.-|+||||.+...+. +....-..++.+.... +...-...++..++.........+.+++. +
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~--r~~~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~~~~--~---- 96 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVR--RTQFAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASKDIF--K---- 96 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEECC-------------------CCEEECSSGGGGG--G----
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH--HHHHCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHHHHH--H----
Confidence 357888999999999998877766 3433322333333221 11112234555554433211111122222 2
Q ss_pred HhCCCeEEEEEeCCCC--cchhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 104 YLMTKRYLIVLDNVWR--ISVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 104 ~l~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
.+.++--+|++|.+.- .+.++.+....+ .+..||+|-++.+
T Consensus 97 ~~~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 97 HITEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp GCCSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 2223334999999853 344544443222 2678999998765
No 298
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.56 E-value=0.012 Score=46.33 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY 53 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~ 53 (243)
+...|.|.|+.|+||||+++.+.+ ....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~--~l~~ 51 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD--RLQE 51 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH--HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHh
Confidence 346899999999999999999988 4443
No 299
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.56 E-value=0.0084 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999887
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.56 E-value=0.0081 Score=48.67 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 301
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.55 E-value=0.0073 Score=48.51 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999865
No 302
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.54 E-value=0.0082 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999886
No 303
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.54 E-value=0.016 Score=52.81 Aligned_cols=62 Identities=19% Similarity=0.109 Sum_probs=37.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
..+.+...|... .+..|+||+|.|||+.+.++... -+... ..+.++...+..+.+++..+..
T Consensus 194 Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~-l~~~~--~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 194 QKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQ-AVKQG--LKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHH-HHHTT--CCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHH-HHhCC--CeEEEEcCchHHHHHHHHHHHh
Confidence 344555556543 37889999999999765444331 22222 3566666665556666666543
No 304
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.54 E-value=0.008 Score=47.75 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 305
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.52 E-value=0.0079 Score=51.75 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999876
No 306
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.52 E-value=0.0082 Score=47.93 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999875
No 307
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.51 E-value=0.016 Score=48.50 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++.+.-.-....+++|.|++|+|||||...+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444443323568999999999999999998864
No 308
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.51 E-value=0.0089 Score=47.12 Aligned_cols=24 Identities=17% Similarity=0.016 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998876
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.50 E-value=0.0079 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999887
No 310
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.50 E-value=0.0077 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++.|.|++|+|||||+..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 347899999999999999988875
No 311
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.49 E-value=0.019 Score=45.53 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCccccc-ccceeEEEE
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKY-YFDCHAWVE 62 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~F~~~~wv~ 62 (243)
....|.|.|+.|+||||++..+.. .... +++.+....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE--TLQQNGIDHITRTR 63 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH--HHHHTTCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhcCCCeeeeec
Confidence 346899999999999999999887 4432 344344443
No 312
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.49 E-value=0.0089 Score=48.26 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999875
No 313
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.47 E-value=0.0073 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999876
No 314
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.47 E-value=0.02 Score=44.57 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCccccc-ccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKY-YFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
..|.+.|+.|+||||+++.+.+ .... .+..+....-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5889999999999999999887 4432 3323333333222234455555554
No 315
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.47 E-value=0.022 Score=47.85 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++.+.|.||+||||+|..++.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHH
Confidence 456677778999999999977765
No 316
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.46 E-value=0.014 Score=45.94 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 045180 28 VAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDAD 70 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 70 (243)
|+|.|-||+||||+|..++. .....-..++-++.....+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcChH
Confidence 56699999999999988876 333333456677766554443
No 317
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.45 E-value=0.014 Score=43.23 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+...|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998763
No 318
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.44 E-value=0.0088 Score=45.38 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...++|.|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998763
No 319
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.43 E-value=0.021 Score=47.40 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++...|.||+||||+|..++.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHH
Confidence 46667778999999999987765
No 320
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.42 E-value=0.016 Score=50.82 Aligned_cols=50 Identities=12% Similarity=-0.035 Sum_probs=32.4
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhcCcccccccc-eeEEEEeCCCCC-HHHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFA-VEAYSSNYVKYYFD-CHAWVEESLLYD-ADQILYDIIK 78 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~ 78 (243)
-+.++|.|.+|+|||+|| ..+.+ .. +-+ .++++-+++... ..++...+..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~--~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIIN--QK--GQDVICIYVAIGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHG--GG--SCSEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHH--hh--cCCcEEEEEECCCcchHHHHHHHHHhh
Confidence 356889999999999996 46666 22 234 346677776543 4455555544
No 321
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.41 E-value=0.033 Score=48.77 Aligned_cols=86 Identities=10% Similarity=-0.009 Sum_probs=48.6
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhcCcccccccc-eeEEEEeCCCCC-HHHHHHHHHHHhCCCCCcc-----cccCh----
Q 045180 25 LSVVAILDSIGLDKTAFA-VEAYSSNYVKYYFD-CHAWVEESLLYD-ADQILYDIIKFVMPSSRLS-----EIMEE---- 92 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~-----~~~~~---- 92 (243)
-+.++|.|.+|+|||+|+ ..+.+ . .+-+ .++++-+++... ..++...+...=......- +....
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n--~--~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIIN--Q--RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHT--T--SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHh--h--ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 356889999999999997 45665 2 2233 356777777643 4455555443211110000 11111
Q ss_pred -----hhhhHHHHHHHHhCCCeEEEEEeCCC
Q 045180 93 -----SSEMKKIILHEYLMTKRYLIVLDNVW 118 (243)
Q Consensus 93 -----~~~~~~~~l~~~l~~~~~LlvlDdv~ 118 (243)
-.+. +.+++ .++.+||++||+.
T Consensus 238 a~~~a~tiA--Eyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 238 APYAGCAMG--EYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHH--HHHHH--TTCEEEEEEETHH
T ss_pred HHHHHHHHH--HHHHh--cCCCEEEEecChH
Confidence 1122 34443 5899999999984
No 322
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.39 E-value=0.021 Score=47.82 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+.+.....+..+++|.|.+|+|||||+..+..
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3333333333578999999999999999988864
No 323
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.39 E-value=0.01 Score=53.04 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++.|.|++|+|||||++.++.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 347899999999999999999887
No 324
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.38 E-value=0.014 Score=46.60 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999876
No 325
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.38 E-value=0.023 Score=44.70 Aligned_cols=39 Identities=13% Similarity=-0.250 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
-.|.+.|.||+||||+|..++. .....-..+..+.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~--~l~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAH--AQLRQGVRVMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHH--HHHHCCCCEEEEEeCCC
Confidence 4477889999999999988777 43332223444555443
No 326
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.37 E-value=0.0068 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+...|+|.|..|+||||+++.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998877
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.36 E-value=0.012 Score=44.16 Aligned_cols=24 Identities=8% Similarity=0.075 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...|++.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998873
No 328
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.36 E-value=0.01 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999876
No 329
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.36 E-value=0.012 Score=42.74 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..|++.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999988764
No 330
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.35 E-value=0.023 Score=45.58 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.++.+.+.........|++.|.+|+|||||...+...
T Consensus 23 ~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444444335567899999999999999998764
No 331
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.35 E-value=0.022 Score=45.83 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 13 ELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 13 ~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
++.+.+...+.....|++.|.+|+|||||...+...
T Consensus 27 ~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 27 ELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444334567889999999999999998764
No 332
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.34 E-value=0.016 Score=50.82 Aligned_cols=50 Identities=14% Similarity=-0.014 Sum_probs=32.5
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhcCcccccccc-eeEEEEeCCCCC-HHHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFA-VEAYSSNYVKYYFD-CHAWVEESLLYD-ADQILYDIIK 78 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~ 78 (243)
-+.++|.|.+|+|||+|| ..+.+. . .-+ .++++-+++... ..++...+..
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 356889999999999996 466662 2 234 346677776543 4455555543
No 333
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.32 E-value=0.01 Score=48.35 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999875
No 334
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.31 E-value=0.0095 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...|+|.|.+|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998764
No 335
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.31 E-value=0.016 Score=47.63 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAY 46 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~ 46 (243)
.++++.|++|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999987
No 336
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=95.31 E-value=0.03 Score=49.68 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCH-HHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDA-DQILYDI 76 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i 76 (243)
-+.++|.|.+|+|||+|+.++++. .+-+.++++-+++...- .+++..+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 467899999999999999998762 23356778888876653 3444443
No 337
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.29 E-value=0.0085 Score=49.44 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|+|+.|+|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999875
No 338
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.25 E-value=0.011 Score=50.66 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|++|+|||+||..++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 36899999999999999998876
No 339
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.25 E-value=0.0096 Score=49.34 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+++|.|+.|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 467999999999999999999885
No 340
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.23 E-value=0.074 Score=50.43 Aligned_cols=22 Identities=9% Similarity=-0.023 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEA 45 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~ 45 (243)
...+++|.|+.|+||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3579999999999999999887
No 341
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.22 E-value=0.037 Score=46.84 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=28.7
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHhcCcccccccceeEEEEeC
Q 045180 23 PQLSVVAILD-SIGLDKTAFAVEAYSSNYVKYYFDCHAWVEES 64 (243)
Q Consensus 23 ~~~~vv~I~G-~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 64 (243)
.+.++|+|+| -||+||||+|..++. .....-..++.++..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~--~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAI--AHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHH--HHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHH--HHHhCCCCEEEEECC
Confidence 3578898886 899999999988776 333333356677755
No 342
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.21 E-value=0.014 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|+|+|.+|+||||++..++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999988876
No 343
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.21 E-value=0.027 Score=48.90 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=33.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIK 78 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 78 (243)
...++.|.|.+|+|||++|..++.+ ....-..+++++... +..++...+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCC--CHHHHHHHHHH
Confidence 4568999999999999999888773 322223566766543 33444444443
No 344
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.18 E-value=0.11 Score=48.26 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=23.4
Q ss_pred hHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHh
Q 045180 10 KMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAY 46 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~ 46 (243)
..+.+...+..+ ..+.|.|+.|+|||+++..+.
T Consensus 98 q~~~i~~~l~~~----~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQNN----QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CeEEEECCCCCCHHHHHHHHH
Confidence 445555555544 588999999999999665443
No 345
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.17 E-value=0.055 Score=42.60 Aligned_cols=107 Identities=9% Similarity=-0.024 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCccccc-ccceeEEEEeC-CCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKY-YFDCHAWVEES-LLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILH 102 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~-~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 102 (243)
..+..++|.-|+||||.+....+ +... .....++-..- ..+. . .+...++.........+..++. +.+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~--r~~~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~--~~~- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVR--RFQIAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVA--QEA- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH--HHHTTTCCEEEEEETTCCCC----------------CEEEEESSGGGGH--HHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHH--HHh-
Confidence 47888999999999987766555 3333 33333333222 2222 2 3445554433211112223344 333
Q ss_pred HHhCCCeEEEEEeCCCCcchhhHHHhhCCCCCCCcEEEEeeCccc
Q 045180 103 EYLMTKRYLIVLDNVWRISVWDVIREILPDSQNGSRVLITLSRIE 147 (243)
Q Consensus 103 ~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~iiiTtR~~~ 147 (243)
++--+|++|.+.-.....++...+.+ .|..||+|-++.+
T Consensus 89 ----~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 ----LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp ----TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred ----ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 23338999998533334444444433 4778999999855
No 346
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.12 E-value=0.093 Score=40.19 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 347
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.11 E-value=0.017 Score=44.71 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFD 56 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~ 56 (243)
+.|+|-|.-|+||||++..+.+ .....++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 5789999999999999999888 5544443
No 348
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.10 E-value=0.018 Score=51.39 Aligned_cols=41 Identities=15% Similarity=-0.089 Sum_probs=28.0
Q ss_pred chhhHHHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 7 LDNKMEELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 7 R~~~~~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
|.+..+.+.+..........+|.+.|++|+||||+|+.+..
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~ 394 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILAT 394 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHH
Confidence 34444444444422222457899999999999999999877
No 349
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.09 E-value=0.021 Score=43.60 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=29.6
Q ss_pred eEEEEE-cCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHH
Q 045180 26 SVVAIL-DSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDAD 70 (243)
Q Consensus 26 ~vv~I~-G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 70 (243)
++|+|+ +-||+||||+|..++. .....-..++-++.....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCCHH
Confidence 577787 5799999999988877 343333356777776554433
No 350
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.08 E-value=0.017 Score=50.16 Aligned_cols=51 Identities=10% Similarity=0.207 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccc----eeEEEEeCCCC-CHHHHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFD----CHAWVEESLLY-DADQILYDIIK 78 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~i~~ 78 (243)
+.++|.|.+|+|||+|+.++++. ...+.+ .++++-+.... ...+++..+..
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 45789999999999999988873 332222 55566666543 34455555443
No 351
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.08 E-value=0.013 Score=47.21 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|+.|+|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 352
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.08 E-value=0.012 Score=42.68 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.|++.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998753
No 353
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.07 E-value=0.012 Score=47.55 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.++|.|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998874
No 354
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.07 E-value=0.018 Score=42.38 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999998764
No 355
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.06 E-value=0.013 Score=42.80 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998763
No 356
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.06 E-value=0.019 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.003 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|.|.|++|+||||+|+.+.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHH
Confidence 457899999999999999999887
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.05 E-value=0.014 Score=47.78 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.++.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 456899999999999999999876
No 358
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.04 E-value=0.014 Score=51.79 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|.++|++|+||||+|+.+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 359
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.04 E-value=0.012 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
-|++.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999999875
No 360
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.03 E-value=0.0064 Score=56.89 Aligned_cols=45 Identities=24% Similarity=0.205 Sum_probs=34.4
Q ss_pred CcccchhhHHHHHHHHhcC-----------CCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 3 DTVGLDNKMEELLDLLTEG-----------PPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 3 ~~vGR~~~~~~l~~~L~~~-----------~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+++|.++..+.|.+.+... -...+.+.++|++|+|||+||+.+++
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 4677777788877766431 02346688999999999999999988
No 361
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.02 E-value=0.014 Score=43.92 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
-+-|.|.|.+|+||||+|..+..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 36789999999999999998876
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.02 E-value=0.014 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+|||||.+.++.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999875
No 363
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.00 E-value=0.043 Score=47.25 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+||||+...+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999988876
No 364
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.99 E-value=0.028 Score=48.99 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+.|.|.+|+|||+++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 3899999999999999988877
No 365
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.99 E-value=0.011 Score=45.86 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 366
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.99 E-value=0.017 Score=42.29 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.-.|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999888753
No 367
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.98 E-value=0.024 Score=46.51 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+++|.|++|+|||||.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 5899999999999999999887
No 368
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.96 E-value=0.037 Score=50.22 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDII 77 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 77 (243)
....|+|++|+|||+++..+.. .....-...+.++.........+...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~--~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVY--HLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH--HHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 4788999999999998776655 3322223456666655545555555554
No 369
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.95 E-value=0.033 Score=41.69 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 12 EELLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 12 ~~l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..+.+ +... ....|+|.|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~--~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNH--QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTT--SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCC--CccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 3332 3567889999999999999998853
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.93 E-value=0.016 Score=44.69 Aligned_cols=25 Identities=12% Similarity=0.028 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|++.|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999988764
No 371
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.92 E-value=0.016 Score=43.63 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+...|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 372
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.90 E-value=0.015 Score=43.69 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
-.|++.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998753
No 373
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.90 E-value=0.017 Score=48.79 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999998865
No 374
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.90 E-value=0.015 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++|+|++|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998865
No 375
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.89 E-value=0.02 Score=41.91 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
--|+|.|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 376
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.89 E-value=0.018 Score=42.66 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4566889999999999999998764
No 377
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.89 E-value=0.011 Score=45.24 Aligned_cols=25 Identities=12% Similarity=-0.092 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999988763
No 378
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.88 E-value=0.017 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+.+|+|+.|+|||||+..++-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999988754
No 379
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.88 E-value=0.014 Score=51.14 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhcCcccccccc-eeEEEEeCCCCC-HHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFA-VEAYSSNYVKYYFD-CHAWVEESLLYD-ADQILYDI 76 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa-~~~~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i 76 (243)
-+.++|.|.+|+|||+|| ..+.+. .. -+ .++++-+++... ..++...+
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~ 213 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNF 213 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHH
Confidence 456889999999999996 466662 22 34 346666766543 33444444
No 380
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.021 Score=41.80 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
--|++.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998763
No 381
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.87 E-value=0.015 Score=42.37 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
--|++.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999888753
No 382
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.86 E-value=0.016 Score=42.19 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.-|++.|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988753
No 383
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.85 E-value=0.028 Score=42.81 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHHHhcCCCCceEEEEEcCCCCcHHHHHHHHhc
Q 045180 14 LLDLLTEGPPQLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 14 l~~~L~~~~~~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+.+.+.-.. +...|++.|.+|+|||||..++..
T Consensus 15 ~l~~~~~~~-~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYK-KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTT-CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccC-CCcEEEEECCCCCCHHHHHHHHhc
Confidence 444443322 335688999999999999999875
No 384
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.84 E-value=0.02 Score=42.61 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 385
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.84 E-value=0.015 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.+|+|.|+.|+||||+++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999988
No 386
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=94.82 E-value=0.048 Score=48.58 Aligned_cols=39 Identities=15% Similarity=0.027 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
+-+.++|.|.+|+|||+|+.++++. .+-+.++++-+...
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER 269 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGER 269 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEEC
T ss_pred CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEeccc
Confidence 3467899999999999999998872 23356777777665
No 387
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.81 E-value=0.018 Score=43.18 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457889999999999999998764
No 388
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.81 E-value=0.019 Score=45.20 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDI 76 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 76 (243)
...++.|.|.+|+|||++|.+++.+ ...+.-..+++++... +...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~-~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK-GAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH-HHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHhcCCCceeecccC--CHHHHHHHH
Confidence 4568999999999999999887652 1222233566666543 445554443
No 389
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.80 E-value=0.019 Score=48.85 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.++.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 346899999999999999999875
No 390
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.80 E-value=0.018 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.183 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 346899999999999999999875
No 391
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.80 E-value=0.022 Score=42.15 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988764
No 392
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.79 E-value=0.017 Score=42.10 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
--|+|.|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988753
No 393
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.78 E-value=0.019 Score=48.49 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 346899999999999999999875
No 394
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.77 E-value=0.015 Score=42.42 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
-|++.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888753
No 395
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.76 E-value=0.018 Score=42.58 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988753
No 396
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.76 E-value=0.036 Score=46.12 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++.+.|.||+||||+|..++.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~ 41 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAI 41 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHH
Confidence 456777789999999999977765
No 397
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.74 E-value=0.02 Score=43.80 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-.|++.|.+|+|||||...+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999888753
No 398
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.74 E-value=0.016 Score=42.35 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999988764
No 399
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.74 E-value=0.022 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|.|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367999999999999999998875
No 400
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.72 E-value=0.24 Score=38.87 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
+.|+|+.|.|||.+|..++.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 77899999999999987766
No 401
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.72 E-value=0.047 Score=45.94 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=19.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...++...|.||+||||+|..++.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~ 40 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAI 40 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 356677779999999998877655
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.72 E-value=0.015 Score=43.55 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999988764
No 403
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.71 E-value=0.043 Score=42.83 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|.+.|+.|+||||++..+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999888
No 404
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.71 E-value=0.016 Score=43.32 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998764
No 405
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.71 E-value=0.016 Score=43.55 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999887653
No 406
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.71 E-value=0.018 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.149 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+|||||.+.++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999875
No 407
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.71 E-value=0.02 Score=48.49 Aligned_cols=24 Identities=17% Similarity=0.082 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.++.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 346899999999999999999874
No 408
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.71 E-value=0.02 Score=42.59 Aligned_cols=25 Identities=20% Similarity=0.073 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998753
No 409
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.69 E-value=0.023 Score=41.99 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999888753
No 410
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.69 E-value=0.019 Score=41.84 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 045180 28 VAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 28 v~I~G~~GiGKTtLa~~~~~ 47 (243)
|++.|.+|+|||+|...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999998864
No 411
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.66 E-value=0.019 Score=42.35 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999988753
No 412
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.63 E-value=0.027 Score=43.43 Aligned_cols=24 Identities=13% Similarity=-0.107 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|+|+|++|+||+++|..+..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHH
Confidence 568999999999999999987654
No 413
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.63 E-value=0.02 Score=50.09 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+|.++|++|+||||+++++.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999876
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.62 E-value=0.024 Score=42.74 Aligned_cols=25 Identities=12% Similarity=-0.039 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5678899999999999999998764
No 415
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.62 E-value=0.018 Score=42.09 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
--|+|.|.+|+|||||...+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4578999999999999998875
No 416
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.62 E-value=0.017 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+|||||.+.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999999875
No 417
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.61 E-value=0.028 Score=43.79 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.....|+|.|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35677899999999999999998764
No 418
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.60 E-value=0.036 Score=45.10 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=32.2
Q ss_pred hHHHHHHHHhcCCCCceEEEEEc---CCCCcHHHHHHHHhcCcccccccceeEEEEeCCCC
Q 045180 10 KMEELLDLLTEGPPQLSVVAILD---SIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLY 67 (243)
Q Consensus 10 ~~~~l~~~L~~~~~~~~vv~I~G---~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~ 67 (243)
..+++.+.+... .++++|.+ -||+||||+|..++. .....-..++-++.....
T Consensus 22 ~~~~~~r~~~~~---~~~i~v~~~s~KGGvGKTT~a~nLA~--~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 22 ILEELRRILSNK---NEAIVILNNYFKGGVGKSKLSTMFAY--LTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp HHHHHHHHHHHH---CSCEEEEECCSSSSSSHHHHHHHHHH--HHHHTTCCEEEEEECTTC
T ss_pred HHHHHHHHhcCC---CcEEEEEeccCCCCchHHHHHHHHHH--HHHhCCCeEEEEeCCCCC
Confidence 345555555433 35666665 899999999988876 333222345666655443
No 419
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.58 E-value=0.018 Score=43.32 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456889999999999999888753
No 420
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.55 E-value=0.02 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+++|.|++|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 46899999999999999999875
No 421
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.55 E-value=0.033 Score=48.94 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCcHHHHH-HHHhcCccc----ccccc-eeEEEEeCCCCC-HHHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFA-VEAYSSNYV----KYYFD-CHAWVEESLLYD-ADQILYDIIK 78 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa-~~~~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~i~~ 78 (243)
-+.++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+++... ..++...+..
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 356889999999999996 455552211 01234 466777776543 4455555544
No 422
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.55 E-value=0.028 Score=41.10 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|++.|.+|+|||||...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999865
No 423
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.55 E-value=0.035 Score=49.90 Aligned_cols=39 Identities=10% Similarity=-0.062 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEES 64 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~ 64 (243)
..+++.+.|.||+||||+|..++. ...+.-..++.++..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~--~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAI--RLAEQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHH--HHHHCCCcEEEEECC
Confidence 457888999999999999988765 332222245555554
No 424
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.54 E-value=0.017 Score=48.73 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999887
No 425
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.54 E-value=0.021 Score=45.06 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.-.++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34689999999999999998877
No 426
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.53 E-value=0.021 Score=43.31 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..-|+|.|.+|+|||||..++..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35688999999999999988863
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.52 E-value=0.026 Score=41.26 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999988753
No 428
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.52 E-value=0.022 Score=43.27 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
....|+|.|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456788999999999999999853
No 429
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.51 E-value=0.019 Score=42.34 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999998754
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.51 E-value=0.015 Score=43.15 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|++.|.+|+|||+|..++...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999988753
No 431
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.50 E-value=0.04 Score=46.41 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.+++|.|++|+|||||...+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 58999999999999999999873
No 432
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.48 E-value=0.02 Score=42.72 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 433
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.48 E-value=0.077 Score=45.18 Aligned_cols=44 Identities=14% Similarity=-0.089 Sum_probs=29.6
Q ss_pred CCceEEEEE-cCCCCcHHHHHHHHhcCccccc------ccceeEEEEeCCCCC
Q 045180 23 PQLSVVAIL-DSIGLDKTAFAVEAYSSNYVKY------YFDCHAWVEESLLYD 68 (243)
Q Consensus 23 ~~~~vv~I~-G~~GiGKTtLa~~~~~~~~~~~------~F~~~~wv~~~~~~~ 68 (243)
...++|+|+ |-||+||||+|..++. .... .-..++-++.....+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~--~La~~~~~~~~g~rVlliD~D~q~~ 156 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAH--AMRAHPHLLMEDLRILVIDLDPQSS 156 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHH--HHHHCTTTGGGCCCEEEEEECTTCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHH--HHHhcchhhcCCCeEEEEeCCCCCC
Confidence 356788887 6899999999988776 3321 223566777765443
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.46 E-value=0.02 Score=42.85 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988753
No 435
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.46 E-value=0.022 Score=42.35 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4556889999999999999998753
No 436
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.44 E-value=0.019 Score=43.39 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|++.|.+|+|||||..++..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999998875
No 437
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.42 E-value=0.026 Score=42.95 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999988754
No 438
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.42 E-value=0.016 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.++.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 346899999999999999999875
No 439
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.41 E-value=0.031 Score=41.69 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcCc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSSN 49 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~~ 49 (243)
....|++.|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999988643
No 440
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.40 E-value=0.028 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...|++.|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998764
No 441
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.38 E-value=0.025 Score=48.27 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|++|+|||||.+.++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 346899999999999999999876
No 442
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.37 E-value=0.023 Score=41.91 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 045180 26 SVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
--|+|.|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578899999999999998874
No 443
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.37 E-value=0.025 Score=43.01 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 444
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.37 E-value=0.021 Score=42.98 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988763
No 445
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.37 E-value=0.025 Score=41.91 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-|+|.|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999988754
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.34 E-value=0.022 Score=42.36 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
--|++.|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999888753
No 447
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.34 E-value=0.025 Score=42.06 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999988753
No 448
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.33 E-value=0.04 Score=44.58 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...|++.|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 456899999999999999998864
No 449
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.33 E-value=0.021 Score=42.58 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999988753
No 450
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.32 E-value=0.022 Score=42.76 Aligned_cols=23 Identities=17% Similarity=-0.145 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.--|+|.|.+|+|||||.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999977654
No 451
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.31 E-value=0.025 Score=51.20 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
+..+|.+.|++|+||||+|+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999877
No 452
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.30 E-value=0.024 Score=42.08 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999998874
No 453
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.023 Score=42.99 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...-|+|.|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988753
No 454
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.26 E-value=0.026 Score=41.81 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988763
No 455
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.26 E-value=0.033 Score=43.81 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998864
No 456
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.26 E-value=0.026 Score=42.81 Aligned_cols=24 Identities=4% Similarity=0.066 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...-|++.|.+|+|||+|...+.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999987766
No 457
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.024 Score=41.99 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|++.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988753
No 458
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.25 E-value=0.026 Score=42.83 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...-|+|.|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999988753
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.23 E-value=0.028 Score=42.65 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988764
No 460
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.20 E-value=0.038 Score=41.51 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 461
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.17 E-value=0.027 Score=46.22 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+...|+|.|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999998764
No 462
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.17 E-value=0.027 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-|+|.|.+|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998764
No 463
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.029 Score=43.53 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..-|+|.|.+|+|||+|..++..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999998874
No 464
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.13 E-value=0.05 Score=43.47 Aligned_cols=45 Identities=9% Similarity=0.031 Sum_probs=31.4
Q ss_pred CceEEEEE-cCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHH
Q 045180 24 QLSVVAIL-DSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQ 71 (243)
Q Consensus 24 ~~~vv~I~-G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 71 (243)
..++|+|+ +-||+||||+|..++. ... .-..++-++.....+...
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~--~la-~g~~VlliD~D~~~~~~~ 71 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILAT--LLS-KNNKVLLIDMDTQASITS 71 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHH--HHT-TTSCEEEEEECTTCHHHH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHH--HHH-CCCCEEEEECCCCCCHHH
Confidence 56788886 4799999999988877 333 234567777766544433
No 465
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.025 Score=42.67 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998754
No 466
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.11 E-value=0.06 Score=42.18 Aligned_cols=40 Identities=15% Similarity=-0.084 Sum_probs=27.4
Q ss_pred CceEEEEEc-CCCCcHHHHHHHHhcCcccccc-cceeEEEEeCC
Q 045180 24 QLSVVAILD-SIGLDKTAFAVEAYSSNYVKYY-FDCHAWVEESL 65 (243)
Q Consensus 24 ~~~vv~I~G-~~GiGKTtLa~~~~~~~~~~~~-F~~~~wv~~~~ 65 (243)
..++|+|++ -||+||||+|..++. ..... -..++.++...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~--~la~~~g~~VlliD~D~ 44 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF--ALSQEPDIHVLAVDISL 44 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH--HHTTSTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH--HHHhCcCCCEEEEECCC
Confidence 457787775 699999999988876 34333 33566666543
No 467
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.11 E-value=0.022 Score=49.59 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccc--cceeEEEEeCCCC-CHHHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYY--FDCHAWVEESLLY-DADQILYDIIK 78 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~i~~ 78 (243)
-+.++|.|.+|+|||+|+..+++.....+. =+.++++-++... ...++...+..
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEK 208 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHh
Confidence 355788999999999999988874333211 1345666666543 34555555554
No 468
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.11 E-value=0.024 Score=43.49 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...-|+|.|.+|+|||||...+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 469
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.10 E-value=0.029 Score=42.71 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988753
No 470
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.09 E-value=0.025 Score=43.34 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...-|+|.|.+|+|||||...+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 345688999999999999998865
No 471
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.09 E-value=0.028 Score=43.11 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...|+|.|.+|+|||||..++...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999998764
No 472
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.09 E-value=0.027 Score=42.37 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998753
No 473
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.09 E-value=0.028 Score=42.31 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
.--|+|.|.+|+|||||...+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhc
Confidence 34588999999999999998875
No 474
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.08 E-value=0.027 Score=43.86 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 045180 27 VVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
-|+|.|.+|+|||+|..++..+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4778999999999999987653
No 475
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.07 E-value=0.037 Score=41.62 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998764
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.07 E-value=0.027 Score=42.50 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|++.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 477
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.07 E-value=0.03 Score=43.17 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..--|+|.|.+|+|||||...+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998763
No 478
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.07 E-value=0.036 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 045180 24 QLSVVAILDSIGLDKTAFAVEA 45 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~ 45 (243)
+..-|.|.|.||+||||+++++
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4567889999999999999875
No 479
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.05 E-value=0.029 Score=45.93 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|+|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4678999999999999999998764
No 480
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.04 E-value=0.029 Score=42.67 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...-|+|.|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3566889999999999999998764
No 481
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.03 E-value=0.039 Score=41.72 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+..-|+|.|.+|+|||||...+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998753
No 482
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.03 E-value=0.028 Score=42.35 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446889999999999999988753
No 483
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.03 E-value=0.023 Score=46.67 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 045180 27 VVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 27 vv~I~G~~GiGKTtLa~~~~~ 47 (243)
-|+|.|.+|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999765
No 484
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.03 E-value=0.031 Score=41.93 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999988754
No 485
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.02 E-value=0.026 Score=42.39 Aligned_cols=25 Identities=20% Similarity=-0.021 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-.|+|.|.+|+|||||...+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 486
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.97 E-value=0.049 Score=40.75 Aligned_cols=25 Identities=16% Similarity=-0.016 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
..-.|+|.|.+|+|||||...+...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4566889999999999999998653
No 487
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.97 E-value=0.03 Score=47.01 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...+++|.|+.|+|||||.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999887
No 488
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.96 E-value=0.066 Score=42.36 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=26.4
Q ss_pred eEEEEEc-CCCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 26 SVVAILD-SIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 26 ~vv~I~G-~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
++|+|+| -||+||||+|..++. .....-..++-++...
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~--~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIAT--GLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHH--HHHhCCCcEEEEECCC
Confidence 5777765 799999999988877 3333323566677664
No 489
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.96 E-value=0.032 Score=43.77 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhc
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
..+|+|.|+.|+||||+|+.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~ 36 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAE 36 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999999887
No 490
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.95 E-value=0.27 Score=51.65 Aligned_cols=118 Identities=12% Similarity=0.114 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcccccChhhhhHHHHHHHHh
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDIIKFVMPSSRLSEIMEESSEMKKIILHEYL 105 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 105 (243)
.-|.++|++|+|||++.+.++........-.....+--....+..+++ ..+.... ......-+. ..+++..
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~----G~~d~~t---~eW~DGils--~~~R~~~ 994 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLY----GSMLKAT---LEWRDGLFT--SILRRVN 994 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHT----TEECTTT---CCEECCSHH--HHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhc----ceecCCC---CeEecChHH--HHHHHHH
Confidence 468899999999999998877521111111222322222233444433 1221111 122223344 5555554
Q ss_pred CC-------CeEEEEEeCCCCcchhhHHHhhCCCC-------------CCCcEEEEeeCcccccccc
Q 045180 106 MT-------KRYLIVLDNVWRISVWDVIREILPDS-------------QNGSRVLITLSRIEIVASF 152 (243)
Q Consensus 106 ~~-------~~~LlvlDdv~~~~~~~~l~~~l~~~-------------~~~~~iiiTtR~~~~~~~~ 152 (243)
.+ .+..||+|+--+....+.+...+.++ .++.++|..+.+-..+...
T Consensus 995 ~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASPA 1061 (2695)
T 4akg_A 995 DDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTPA 1061 (2695)
T ss_dssp TCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCHH
T ss_pred hccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCcc
Confidence 32 26789999875554444444433322 2456777777665555443
No 491
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.95 E-value=0.035 Score=45.65 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 23 PQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 23 ~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
+....|+|+|.+|+|||||..++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999988763
No 492
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.93 E-value=0.027 Score=41.98 Aligned_cols=25 Identities=20% Similarity=0.028 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
....|+|.|.+|+|||||...+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998763
No 493
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.93 E-value=0.03 Score=42.03 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
...|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999998763
No 494
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=93.91 E-value=0.035 Score=49.19 Aligned_cols=38 Identities=16% Similarity=0.005 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCC
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLL 66 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~ 66 (243)
-+.++|.|.+|+|||+|+.++++. .+-+.++++-++..
T Consensus 221 Gqr~~Ifg~~g~GKT~l~~~ia~~----~~~~v~V~~~iGER 258 (578)
T 3gqb_A 221 GGTAAIPGPFGSGKSVTQQSLAKW----SNADVVVYVGSGER 258 (578)
T ss_dssp TCEEEECCCTTSCHHHHHHHHHHH----SSCSEEEEEEEEEC
T ss_pred CCEEeeeCCCCccHHHHHHHHHhc----cCCCEEEEEEeccc
Confidence 467899999999999999998772 22346777777665
No 495
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.88 E-value=0.076 Score=45.92 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.0
Q ss_pred cchhhHHHHHHHHhcC---------CCCceEEEEEcCCCCcHHHHHHHHhcC
Q 045180 6 GLDNKMEELLDLLTEG---------PPQLSVVAILDSIGLDKTAFAVEAYSS 48 (243)
Q Consensus 6 GR~~~~~~l~~~L~~~---------~~~~~vv~I~G~~GiGKTtLa~~~~~~ 48 (243)
|-++-++.+.+.+... .+....|+|.|.+|+|||||...+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 4556666666666421 123457899999999999999998764
No 496
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.87 E-value=0.032 Score=48.35 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=32.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHhcCcccc--------cccc-eeEEEEeCCCC-CHHHHHHHHH
Q 045180 25 LSVVAILDSIGLDKTAFAVEAYSSNYVK--------YYFD-CHAWVEESLLY-DADQILYDII 77 (243)
Q Consensus 25 ~~vv~I~G~~GiGKTtLa~~~~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~ 77 (243)
-+.++|.|.+|+|||+|+.++++..... ++-+ .++++-+.... ...++...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~ 209 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFE 209 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhh
Confidence 3457889999999999999888743321 1112 45566666543 3344555443
No 497
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.87 E-value=0.044 Score=41.08 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...-|+|.|.+|+|||||...+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 345788999999999999998875
No 498
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.87 E-value=0.12 Score=42.22 Aligned_cols=41 Identities=10% Similarity=0.058 Sum_probs=28.8
Q ss_pred CCceEEEEEcC-CCCcHHHHHHHHhcCcccccccceeEEEEeCC
Q 045180 23 PQLSVVAILDS-IGLDKTAFAVEAYSSNYVKYYFDCHAWVEESL 65 (243)
Q Consensus 23 ~~~~vv~I~G~-~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~ 65 (243)
...++|.|+|. ||+||||+|..++. .....-..++.++...
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~--~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAA--VIAQSDQKVLFIDADL 143 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHH--HHHHTTCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHH--HHHhCCCcEEEEECCC
Confidence 35688999985 89999999988776 3333333566666554
No 499
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.85 E-value=0.042 Score=41.37 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHhc
Q 045180 24 QLSVVAILDSIGLDKTAFAVEAYS 47 (243)
Q Consensus 24 ~~~vv~I~G~~GiGKTtLa~~~~~ 47 (243)
...-|+|.|.+|+|||||...+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 345688999999999999998875
No 500
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.84 E-value=0.082 Score=49.35 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCcccccccceeEEEEeCCCCCHHHHHHHHH
Q 045180 26 SVVAILDSIGLDKTAFAVEAYSSNYVKYYFDCHAWVEESLLYDADQILYDII 77 (243)
Q Consensus 26 ~vv~I~G~~GiGKTtLa~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 77 (243)
++..|+|++|+|||+++..+.. .....-...+.+..........+...+.
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~--~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVY--HLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH--HHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 4788999999999998776655 3322122355555554444444544443
Done!