BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045184
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 25 HLVNYKRQETTTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLC 84
L +Y+ S + C +C+ F + R+ L CNH FH C+D WL+ N TCP+C
Sbjct: 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRV-LPCNHEFHAKCVDKWLKANRTCPIC 66
Query: 85 R 85
R
Sbjct: 67 R 67
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCR 85
CA+CL D E R C H FH C+D WL + TCPLCR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88
C +C E +A E+ R L CNH+FH +CI WLE + +CP+CR +
Sbjct: 18 CPVCKEDYALGESVRQ-LPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 37 SSSSSG----------CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRN 86
SS SSG CA+CLE F + I C H FH C+ WLE+ CPLC
Sbjct: 2 SSGSSGKVKELNLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEVRKVCPLCNM 60
Query: 87 CILD 90
+L
Sbjct: 61 PVLQ 64
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCR 85
C ICL + E R L C H+FH C+D WL N CP+CR
Sbjct: 17 CTICLSILEEGEDVR-RLPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From
Mus Musculus
Length = 55
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 23/50 (46%)
Query: 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRN 86
SS SSGC ICLE L C H+ H C + L+ CPLC
Sbjct: 2 SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCR 85
C IC++ AD + L C H F CID W + + CP+CR
Sbjct: 18 CCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCR 85
C IC + + L C+H FH C+ WL+ + TCP+CR
Sbjct: 43 CPICCSEYVKGDV-ATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 48 ETFADDETCRI-FLVCNHIFHLNCIDGWLEINLTCPL 83
+ A E C + + VCNH FH +CI WL+ CPL
Sbjct: 52 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 48 ETFADDETCRI-FLVCNHIFHLNCIDGWLEINLTCPL 83
+ A E C + + VCNH FH +CI WL+ CPL
Sbjct: 60 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp
Abasic Site Containing Dna-Duplex
Length = 98
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 48 ETFADDETCRI-FLVCNHIFHLNCIDGWLEINLTCPL 83
+ A E C + + VCNH FH +CI WL+ CPL
Sbjct: 50 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 48 ETFADDETCRI-FLVCNHIFHLNCIDGWLEINLTCPL 83
+ A E C + + VCNH FH +CI WL+ CPL
Sbjct: 58 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 48 ETFADDETCRI-FLVCNHIFHLNCIDGWLEINLTCPL 83
+ A E C + + VCNH FH +CI WL+ CPL
Sbjct: 58 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 51 ADDETCRI-FLVCNHIFHLNCIDGWLEINLTCPL 83
A E C + + VCNH FH +CI WL+ CPL
Sbjct: 72 ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 51 ADDETCRI-FLVCNHIFHLNCIDGWLEINLTCPL 83
A E C + + VCNH FH +CI WL+ CPL
Sbjct: 45 ATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCR 85
++ + C ICLE D + L C H F CI W+ N TCPLC+
Sbjct: 2 ATVAERCPICLE---DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLC 84
S C ICLE L C H+ H C + L+ CPLC
Sbjct: 4 SQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88
C IC E F + + L C H F CI+ W++ + CP+CR I
Sbjct: 56 CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88
C IC E F + + L C H F CI+ W++ + CP+CR I
Sbjct: 56 CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88
C IC E F + T L C H F CI+ W++ + CP+CR I
Sbjct: 67 CIICSEYFIEAVT----LNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 58 IFLVCNHIFHLNCIDGWLEINLTCPLCRN 86
++ CNH FH C+ W++ N CPLC+
Sbjct: 44 VWGECNHSFHNCCMSLWVKQNNRCPLCQQ 72
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 27 VNYKR-QETTTSSSSSGCAICLETFAD-DETCRIFLV--CNHIFHLNCIDGWLEINLTCP 82
+N+KR S + C IC++ +++ + R+ + C H+F C+ L+ TCP
Sbjct: 58 INHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 117
Query: 83 LCRN 86
CR
Sbjct: 118 TCRK 121
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 37 SSSSSGCAICLETFAD-DETCRIFLV--CNHIFHLNCIDGWLEINLTCPLCRN 86
S + C IC++ +++ + R+ + C H+F C+ L+ TCP CR
Sbjct: 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRK 56
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRN 86
CAICL+T + L C H+F C+ G + C LCR
Sbjct: 18 CAICLQTCVHP----VSLPCKHVFCYLCVKGASWLGKRCALCRQ 57
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCR 85
C IC E +D+ +I C H+ +C+ W E + CP CR
Sbjct: 341 CKICAE---NDKDVKI-EPCGHLMCTSCLTAWQESDGQGCPFCR 380
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLT---CPLC 84
C IC+E+F +++ L C H C++ L ++ CP C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 17/61 (27%)
Query: 37 SSSSSG----------CAICLETFADDETCRIFLVCNHIFHLNCIDGW---LEINLTCPL 83
SS SSG C++CLE + + + C H F CI W LE + CP+
Sbjct: 2 SSGSSGALENLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPV 57
Query: 84 C 84
C
Sbjct: 58 C 58
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 37 SSSSSGCAICLETFAD-DETCRIFLV--CNHIFHLNCIDGWLEINLTCPLCRNCI 88
S + C IC++ +++ + R+ + C H+F C+ L+ TCP CR I
Sbjct: 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCR 85
C IC E +D+ +I C H+ +C+ W E CP CR
Sbjct: 337 CKICAE---NDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCR 85
C IC E +D+ +I C H+ +C+ W E CP CR
Sbjct: 335 CKICAE---NDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCR 85
C IC E +D+ +I C H+ +C+ W E CP CR
Sbjct: 335 CKICAE---NDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCR 85
C IC E +D+ +I C H+ +C+ W E CP CR
Sbjct: 337 CKICAE---NDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 37 SSSSSGCAICLETFAD-DETCRIFLV--CNHIFHLNCIDGWLEINLTCPLCRNCI 88
S + C IC++ +++ + R+ + C H+F C+ L+ TCP CR I
Sbjct: 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 43 CAICLETFAD-DETCRIFLV--CNHIFHLNCIDGWLEINLTCPLCRNCI 88
C IC++ +++ + R+ + C H+F C+ L+ TCP CR I
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 31 RQETTTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLC 84
R + T + C +C F D T + C H F CI +LE + CP+C
Sbjct: 2 RIKITELNPHLMCVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLC 84
C +C F D T + C H F CI +LE + CP+C
Sbjct: 18 CVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLC 84
C +C F D T + C H F CI +LE + CP+C
Sbjct: 18 CVLCGGYFIDATT---IIECLHSFCKTCIVRYLETSKYCPIC 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.137 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,144,430
Number of Sequences: 62578
Number of extensions: 62074
Number of successful extensions: 228
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 47
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)