Query 045184
Match_columns 91
No_of_seqs 167 out of 1444
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.8 4.5E-19 1.5E-23 92.8 4.1 62 28-90 11-72 (75)
2 1iym_A EL5; ring-H2 finger, ub 99.7 2.3E-18 7.7E-23 85.1 3.8 52 38-89 3-54 (55)
3 2ecm_A Ring finger and CHY zin 99.7 4E-18 1.4E-22 84.2 4.2 52 38-89 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.7 7E-18 2.4E-22 86.9 5.3 54 35-89 9-62 (69)
5 2ep4_A Ring finger protein 24; 99.7 6.6E-18 2.3E-22 88.1 4.5 54 36-90 11-64 (74)
6 2l0b_A E3 ubiquitin-protein li 99.7 9.8E-18 3.4E-22 90.8 4.5 54 36-90 36-89 (91)
7 2ect_A Ring finger protein 126 99.7 1.1E-17 3.8E-22 88.0 4.5 54 36-90 11-64 (78)
8 3ng2_A RNF4, snurf, ring finge 99.7 1.9E-17 6.4E-22 85.6 3.3 55 36-90 6-63 (71)
9 2ea6_A Ring finger protein 4; 99.7 3.4E-17 1.2E-21 84.1 3.9 55 36-90 11-68 (69)
10 2d8t_A Dactylidin, ring finger 99.7 3.8E-17 1.3E-21 84.6 2.7 50 36-89 11-60 (71)
11 1v87_A Deltex protein 2; ring- 99.7 1.2E-16 4.1E-21 89.4 4.9 50 40-89 25-93 (114)
12 2djb_A Polycomb group ring fin 99.7 1.5E-16 5.1E-21 82.6 4.9 51 35-89 10-61 (72)
13 2ecl_A Ring-box protein 2; RNF 99.6 4.7E-17 1.6E-21 86.4 2.7 51 39-89 14-75 (81)
14 4ayc_A E3 ubiquitin-protein li 99.6 2.1E-17 7.2E-22 95.5 1.2 47 39-89 52-98 (138)
15 2csy_A Zinc finger protein 183 99.6 1.3E-16 4.5E-21 84.5 4.2 50 36-89 11-60 (81)
16 2ecy_A TNF receptor-associated 99.6 3.7E-16 1.3E-20 79.8 4.9 51 36-90 11-62 (66)
17 2xeu_A Ring finger protein 4; 99.6 1.4E-16 4.7E-21 80.7 3.2 52 39-90 2-56 (64)
18 2yur_A Retinoblastoma-binding 99.6 3.2E-16 1.1E-20 81.7 4.6 51 35-89 10-63 (74)
19 3dpl_R Ring-box protein 1; ubi 99.6 3.1E-16 1.1E-20 87.0 4.1 50 39-88 36-99 (106)
20 2ct2_A Tripartite motif protei 99.6 4.8E-16 1.6E-20 83.2 4.8 55 35-89 10-67 (88)
21 2ysl_A Tripartite motif-contai 99.6 7.2E-16 2.5E-20 80.0 4.6 51 36-90 16-69 (73)
22 1chc_A Equine herpes virus-1 r 99.6 4.8E-16 1.6E-20 79.7 3.8 48 39-89 4-51 (68)
23 1t1h_A Gspef-atpub14, armadill 99.6 8.2E-16 2.8E-20 80.8 4.0 49 37-89 5-54 (78)
24 1g25_A CDK-activating kinase a 99.6 1.1E-15 3.9E-20 77.7 4.2 51 39-89 2-54 (65)
25 2ecn_A Ring finger protein 141 99.6 2.4E-16 8.2E-21 81.3 1.3 49 36-89 11-59 (70)
26 3lrq_A E3 ubiquitin-protein li 99.6 5.5E-16 1.9E-20 85.1 2.5 48 38-89 20-69 (100)
27 2ecw_A Tripartite motif-contai 99.6 2.1E-15 7.3E-20 80.0 4.6 50 36-89 15-70 (85)
28 2egp_A Tripartite motif-contai 99.6 5.9E-16 2E-20 81.4 2.2 50 36-89 8-64 (79)
29 3ztg_A E3 ubiquitin-protein li 99.6 2.2E-15 7.7E-20 81.4 4.4 50 35-88 8-60 (92)
30 2ysj_A Tripartite motif-contai 99.6 3.8E-15 1.3E-19 75.3 4.8 45 36-84 16-63 (63)
31 2ecv_A Tripartite motif-contai 99.6 2.9E-15 9.9E-20 79.5 4.3 50 36-89 15-70 (85)
32 2y43_A E3 ubiquitin-protein li 99.5 2.3E-15 7.7E-20 82.4 3.1 47 39-89 21-68 (99)
33 4ap4_A E3 ubiquitin ligase RNF 99.5 2.2E-15 7.6E-20 85.8 3.0 52 38-89 5-59 (133)
34 2ecj_A Tripartite motif-contai 99.5 5.2E-15 1.8E-19 73.5 3.9 45 36-84 11-58 (58)
35 3fl2_A E3 ubiquitin-protein li 99.5 2.8E-15 9.7E-20 85.0 3.2 48 38-89 50-98 (124)
36 2ckl_A Polycomb group ring fin 99.5 3.7E-15 1.3E-19 82.8 3.5 48 38-89 13-61 (108)
37 3hct_A TNF receptor-associated 99.5 5.2E-15 1.8E-19 83.4 3.7 52 34-89 12-64 (118)
38 4a0k_B E3 ubiquitin-protein li 99.5 1E-15 3.5E-20 86.1 0.4 50 39-88 47-110 (117)
39 2d8s_A Cellular modulator of i 99.5 1.3E-14 4.6E-19 76.7 3.7 52 36-89 11-69 (80)
40 1e4u_A Transcriptional repress 99.5 2.5E-14 8.5E-19 75.3 4.6 55 36-90 7-62 (78)
41 1z6u_A NP95-like ring finger p 99.5 4.2E-15 1.4E-19 87.0 1.7 47 39-89 77-124 (150)
42 3l11_A E3 ubiquitin-protein li 99.5 2.9E-15 1E-19 83.9 0.7 50 36-89 11-61 (115)
43 1jm7_A BRCA1, breast cancer ty 99.5 1.2E-14 4E-19 80.9 3.1 46 40-89 21-69 (112)
44 2ckl_B Ubiquitin ligase protei 99.5 1.3E-14 4.3E-19 85.9 2.4 48 39-89 53-101 (165)
45 2kr4_A Ubiquitin conjugation f 99.5 5.5E-14 1.9E-18 75.1 4.2 50 36-89 10-59 (85)
46 1rmd_A RAG1; V(D)J recombinati 99.5 2.3E-14 7.7E-19 80.4 2.7 47 39-89 22-69 (116)
47 4ap4_A E3 ubiquitin ligase RNF 99.4 2.8E-14 9.6E-19 81.2 2.2 53 37-89 69-124 (133)
48 2kre_A Ubiquitin conjugation f 99.4 8.2E-14 2.8E-18 76.5 3.9 50 36-89 25-74 (100)
49 2vje_A E3 ubiquitin-protein li 99.4 4E-14 1.4E-18 71.9 2.5 48 38-89 6-56 (64)
50 2vje_B MDM4 protein; proto-onc 99.4 5.7E-14 2E-18 71.1 2.3 50 38-89 5-55 (63)
51 1wgm_A Ubiquitin conjugation f 99.4 2.6E-13 8.8E-18 74.3 4.6 49 37-89 19-68 (98)
52 3knv_A TNF receptor-associated 99.4 4.2E-14 1.4E-18 82.0 1.3 49 36-88 27-76 (141)
53 1bor_A Transcription factor PM 99.4 6.4E-14 2.2E-18 69.3 1.5 45 38-89 4-48 (56)
54 2ct0_A Non-SMC element 1 homol 99.4 3.6E-13 1.2E-17 70.1 4.1 49 38-89 13-63 (74)
55 3hcs_A TNF receptor-associated 99.4 2.4E-13 8.3E-18 80.7 3.5 52 34-89 12-64 (170)
56 1jm7_B BARD1, BRCA1-associated 99.4 6.8E-14 2.3E-18 78.6 0.8 45 39-89 21-66 (117)
57 2y1n_A E3 ubiquitin-protein li 99.4 4E-13 1.4E-17 88.4 3.7 45 41-89 333-378 (389)
58 4ic3_A E3 ubiquitin-protein li 99.3 1.1E-13 3.6E-18 72.2 0.6 43 39-89 23-66 (74)
59 2c2l_A CHIP, carboxy terminus 99.3 3.6E-12 1.2E-16 80.2 6.3 50 36-89 204-254 (281)
60 2ea5_A Cell growth regulator w 99.3 4.8E-12 1.6E-16 64.9 4.2 47 36-90 11-58 (68)
61 2ecg_A Baculoviral IAP repeat- 99.3 1.5E-12 5E-17 67.9 1.9 43 40-90 25-68 (75)
62 2yu4_A E3 SUMO-protein ligase 99.2 3.9E-12 1.3E-16 69.0 2.5 47 37-87 4-59 (94)
63 2f42_A STIP1 homology and U-bo 99.2 3.1E-11 1.1E-15 72.3 6.4 51 35-89 101-152 (179)
64 2yho_A E3 ubiquitin-protein li 99.2 2.9E-12 9.9E-17 67.5 0.1 42 40-89 18-60 (79)
65 1wim_A KIAA0161 protein; ring 99.1 3.5E-11 1.2E-15 65.1 3.2 49 38-87 3-61 (94)
66 3k1l_B Fancl; UBC, ring, RWD, 99.1 2.8E-11 9.7E-16 78.5 1.3 52 38-89 306-372 (381)
67 1vyx_A ORF K3, K3RING; zinc-bi 99.0 1.8E-10 6E-15 57.6 3.6 48 38-89 4-58 (60)
68 3t6p_A Baculoviral IAP repeat- 99.0 3.3E-11 1.1E-15 78.5 0.3 42 40-89 295-337 (345)
69 3htk_C E3 SUMO-protein ligase 99.0 2E-10 7E-15 72.1 2.0 47 39-89 180-231 (267)
70 2bay_A PRE-mRNA splicing facto 98.9 5.3E-10 1.8E-14 56.0 1.5 46 40-89 3-49 (61)
71 3vk6_A E3 ubiquitin-protein li 98.7 9.4E-09 3.2E-13 55.7 2.3 45 42-89 3-48 (101)
72 3nw0_A Non-structural maintena 98.2 6.9E-07 2.4E-11 55.6 2.7 47 40-89 180-228 (238)
73 2ko5_A Ring finger protein Z; 96.9 0.00021 7.1E-09 38.2 0.6 45 39-89 27-72 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 96.7 0.0013 4.3E-08 35.3 2.6 34 40-74 3-36 (101)
75 2lri_C Autoimmune regulator; Z 95.9 0.0085 2.9E-07 30.0 3.0 47 37-87 9-59 (66)
76 3m62_A Ubiquitin conjugation f 95.5 0.019 6.4E-07 42.1 4.6 51 35-89 886-937 (968)
77 1zbd_B Rabphilin-3A; G protein 95.0 0.021 7.2E-07 32.5 2.9 35 38-72 53-88 (134)
78 2vpb_A Hpygo1, pygopus homolog 94.3 0.031 1.1E-06 27.8 2.3 36 37-72 5-41 (65)
79 2zet_C Melanophilin; complex, 94.2 0.048 1.7E-06 31.7 3.3 34 38-71 66-100 (153)
80 1mm2_A MI2-beta; PHD, zinc fin 94.0 0.014 4.8E-07 28.6 0.6 49 38-90 7-59 (61)
81 1we9_A PHD finger family prote 93.6 0.041 1.4E-06 27.0 1.9 51 37-87 3-58 (64)
82 2k16_A Transcription initiatio 93.4 0.019 6.5E-07 29.2 0.5 51 37-88 15-69 (75)
83 2l5u_A Chromodomain-helicase-D 93.1 0.055 1.9E-06 26.4 1.9 46 37-86 8-57 (61)
84 1wfk_A Zinc finger, FYVE domai 92.1 0.12 4.1E-06 27.1 2.6 37 37-73 6-42 (88)
85 2kgg_A Histone demethylase jar 92.1 0.16 5.3E-06 23.9 2.7 44 42-85 4-52 (52)
86 1weo_A Cellulose synthase, cat 92.0 0.41 1.4E-05 25.3 4.5 50 39-88 15-68 (93)
87 1wil_A KIAA1045 protein; ring 91.4 0.23 7.8E-06 26.0 3.0 34 39-74 14-47 (89)
88 1joc_A EEA1, early endosomal a 91.3 0.12 4E-06 29.0 2.1 34 40-73 69-102 (125)
89 2yw8_A RUN and FYVE domain-con 91.1 0.15 5.3E-06 26.3 2.3 34 40-73 19-52 (82)
90 1wep_A PHF8; structural genomi 91.1 0.24 8.2E-06 25.3 3.0 47 40-87 12-63 (79)
91 1z2q_A LM5-1; membrane protein 90.9 0.17 5.7E-06 26.3 2.3 35 39-73 20-54 (84)
92 2yql_A PHD finger protein 21A; 90.9 0.021 7E-07 27.5 -1.2 47 36-86 5-55 (56)
93 1vfy_A Phosphatidylinositol-3- 90.5 0.18 6.3E-06 25.4 2.2 33 41-73 12-44 (73)
94 1y02_A CARP2, FYVE-ring finger 90.5 0.021 7.3E-07 31.9 -1.5 45 40-84 19-63 (120)
95 1x4u_A Zinc finger, FYVE domai 90.0 0.19 6.6E-06 26.0 2.0 34 40-73 14-47 (84)
96 1z60_A TFIIH basal transcripti 90.0 0.17 5.8E-06 24.7 1.7 43 41-84 16-58 (59)
97 2cs3_A Protein C14ORF4, MY039 89.9 1.2 4.1E-05 23.1 5.0 40 38-77 13-52 (93)
98 3u5n_A E3 ubiquitin-protein li 89.8 0.073 2.5E-06 32.2 0.4 45 39-87 6-54 (207)
99 3t7l_A Zinc finger FYVE domain 89.8 0.3 1E-05 25.6 2.7 35 40-74 20-54 (90)
100 3o36_A Transcription intermedi 89.7 0.073 2.5E-06 31.5 0.3 45 39-87 3-51 (184)
101 2xb1_A Pygopus homolog 2, B-ce 89.3 0.2 6.7E-06 27.2 1.8 47 40-86 3-60 (105)
102 1f62_A Transcription factor WS 88.9 0.2 6.7E-06 23.3 1.4 44 42-86 2-49 (51)
103 3lqh_A Histone-lysine N-methyl 88.7 0.24 8.3E-06 29.5 2.0 49 40-88 2-64 (183)
104 3v43_A Histone acetyltransfera 88.5 1 3.6E-05 24.4 4.4 34 39-72 4-42 (112)
105 1fp0_A KAP-1 corepressor; PHD 88.2 0.19 6.5E-06 26.5 1.2 47 36-86 21-71 (88)
106 2yt5_A Metal-response element- 88.1 0.27 9.3E-06 24.1 1.7 51 37-87 3-61 (66)
107 1dvp_A HRS, hepatocyte growth 88.1 0.22 7.5E-06 30.3 1.6 34 40-73 161-194 (220)
108 3v43_A Histone acetyltransfera 87.6 0.14 4.7E-06 28.0 0.5 45 42-86 63-111 (112)
109 3zyq_A Hepatocyte growth facto 87.3 0.47 1.6E-05 29.1 2.7 34 40-73 164-197 (226)
110 2lv9_A Histone-lysine N-methyl 86.6 0.33 1.1E-05 25.9 1.6 46 39-86 27-75 (98)
111 2ku3_A Bromodomain-containing 85.2 1 3.5E-05 22.6 3.0 50 36-85 12-64 (71)
112 3mjh_B Early endosome antigen 85.1 0.29 1E-05 21.1 0.8 18 38-55 3-20 (34)
113 1x62_A C-terminal LIM domain p 84.6 0.61 2.1E-05 23.4 2.0 39 38-88 13-51 (79)
114 2l43_A N-teminal domain from h 83.8 1.2 4.1E-05 23.2 3.0 50 37-86 22-74 (88)
115 3mpx_A FYVE, rhogef and PH dom 83.7 0.21 7.3E-06 33.0 0.0 49 40-88 375-430 (434)
116 3o70_A PHD finger protein 13; 83.4 0.17 5.8E-06 25.3 -0.5 47 38-86 17-66 (68)
117 4fo9_A E3 SUMO-protein ligase 83.2 0.66 2.2E-05 30.6 2.1 47 40-89 215-265 (360)
118 2o35_A Hypothetical protein DU 82.7 0.49 1.7E-05 25.5 1.1 12 65-76 42-53 (105)
119 3fyb_A Protein of unknown func 82.7 0.49 1.7E-05 25.4 1.1 12 65-76 41-52 (104)
120 2cor_A Pinch protein; LIM doma 82.7 1.4 4.8E-05 22.1 2.9 38 40-89 15-52 (79)
121 3i2d_A E3 SUMO-protein ligase 82.4 0.54 1.8E-05 31.1 1.5 46 40-88 249-298 (371)
122 2jvx_A NF-kappa-B essential mo 82.3 0.26 8.9E-06 20.3 -0.0 12 79-90 4-15 (28)
123 2ysm_A Myeloid/lymphoid or mix 81.5 0.43 1.5E-05 25.8 0.7 37 38-75 5-41 (111)
124 2ro1_A Transcription intermedi 81.4 0.32 1.1E-05 29.0 0.2 44 40-87 2-49 (189)
125 2co8_A NEDD9 interacting prote 81.2 1.7 5.8E-05 22.0 2.9 40 38-88 13-52 (82)
126 1x64_A Alpha-actinin-2 associa 81.1 1.6 5.4E-05 22.4 2.8 39 39-89 24-62 (89)
127 3asl_A E3 ubiquitin-protein li 81.1 0.35 1.2E-05 24.2 0.2 44 42-86 20-68 (70)
128 2ri7_A Nucleosome-remodeling f 81.0 0.94 3.2E-05 26.3 2.1 48 38-86 6-58 (174)
129 2d8x_A Protein pinch; LIM doma 80.5 0.72 2.5E-05 22.4 1.3 11 41-51 6-16 (70)
130 2lbm_A Transcriptional regulat 80.0 4.2 0.00014 23.2 4.5 46 38-87 61-117 (142)
131 2kwj_A Zinc finger protein DPF 79.8 1.2 4E-05 24.3 2.1 32 42-73 3-40 (114)
132 2e6s_A E3 ubiquitin-protein li 79.7 0.33 1.1E-05 24.8 -0.1 44 42-86 28-76 (77)
133 2d8z_A Four and A half LIM dom 78.7 1.6 5.4E-05 21.1 2.3 10 42-51 7-16 (70)
134 1nyp_A Pinch protein; LIM doma 78.5 1.1 3.8E-05 21.4 1.6 37 41-89 6-42 (66)
135 1wyh_A SLIM 2, skeletal muscle 78.3 2.1 7.2E-05 20.7 2.6 28 42-71 7-34 (72)
136 1xwh_A Autoimmune regulator; P 78.1 1.2 4E-05 21.8 1.6 45 38-86 6-54 (66)
137 2cu8_A Cysteine-rich protein 2 77.8 2.1 7.2E-05 21.1 2.6 39 40-89 9-47 (76)
138 1iml_A CRIP, cysteine rich int 77.7 0.76 2.6E-05 22.8 0.9 43 41-88 28-71 (76)
139 1wig_A KIAA1808 protein; LIM d 77.6 1.2 4.1E-05 22.0 1.6 9 43-51 8-16 (73)
140 1wee_A PHD finger family prote 76.5 1.5 5.3E-05 21.8 1.8 48 38-86 14-65 (72)
141 1wen_A Inhibitor of growth fam 76.4 2.1 7.3E-05 21.3 2.3 48 38-88 14-66 (71)
142 1x4l_A Skeletal muscle LIM-pro 76.4 1.7 6E-05 21.1 2.0 38 41-88 6-45 (72)
143 2dar_A PDZ and LIM domain prot 75.9 1.4 4.7E-05 22.6 1.6 39 39-89 24-62 (90)
144 3ql9_A Transcriptional regulat 75.6 5.5 0.00019 22.4 4.1 45 39-87 56-111 (129)
145 1x61_A Thyroid receptor intera 75.3 2 6.9E-05 20.8 2.1 12 64-75 54-65 (72)
146 2puy_A PHD finger protein 21A; 75.2 1.5 5.1E-05 21.0 1.5 44 39-86 4-51 (60)
147 1x4k_A Skeletal muscle LIM-pro 75.2 1.2 4.2E-05 21.6 1.2 28 42-71 7-34 (72)
148 1g47_A Pinch protein; LIM doma 75.0 1.3 4.3E-05 21.9 1.3 40 39-88 10-49 (77)
149 1wd2_A Ariadne-1 protein homol 74.9 0.46 1.6E-05 23.1 -0.4 38 40-77 6-47 (60)
150 2dj7_A Actin-binding LIM prote 74.7 2.6 8.9E-05 21.2 2.4 39 39-88 14-52 (80)
151 1x6a_A LIMK-2, LIM domain kina 74.6 1.6 5.3E-05 21.8 1.6 26 42-71 17-42 (81)
152 3ask_A E3 ubiquitin-protein li 74.4 0.62 2.1E-05 28.7 -0.0 44 42-86 176-224 (226)
153 2cur_A Skeletal muscle LIM-pro 74.1 1.4 4.7E-05 21.3 1.2 10 42-51 7-16 (69)
154 1x63_A Skeletal muscle LIM-pro 73.8 1.9 6.6E-05 21.5 1.8 39 41-89 16-54 (82)
155 3shb_A E3 ubiquitin-protein li 73.7 0.52 1.8E-05 24.1 -0.4 44 42-86 28-76 (77)
156 1wem_A Death associated transc 72.2 5.2 0.00018 19.9 3.2 45 40-86 16-69 (76)
157 2e6r_A Jumonji/ARID domain-con 72.1 1.7 5.7E-05 22.9 1.3 50 36-86 12-65 (92)
158 1weu_A Inhibitor of growth fam 71.1 3.7 0.00013 21.6 2.5 46 39-87 35-85 (91)
159 1v6g_A Actin binding LIM prote 70.5 1.3 4.6E-05 22.1 0.7 35 42-88 17-51 (81)
160 2jmo_A Parkin; IBR, E3 ligase, 70.4 0.24 8.2E-06 25.4 -2.2 20 61-82 55-74 (80)
161 2gmg_A Hypothetical protein PF 70.2 0.82 2.8E-05 24.8 -0.2 25 60-89 71-95 (105)
162 1x68_A FHL5 protein; four-and- 68.5 1.8 6E-05 21.4 0.9 29 41-71 6-36 (76)
163 1zfo_A LAsp-1; LIM domain, zin 67.7 2 6.9E-05 17.7 0.9 28 41-71 4-31 (31)
164 2dlo_A Thyroid receptor-intera 66.0 1.7 5.7E-05 21.8 0.5 27 41-71 16-42 (81)
165 2cuq_A Four and A half LIM dom 65.7 2.6 8.9E-05 20.9 1.2 36 41-88 16-51 (80)
166 1x3h_A Leupaxin; paxillin fami 65.4 1.7 6E-05 21.6 0.5 37 41-89 16-52 (80)
167 3a1b_A DNA (cytosine-5)-methyl 64.8 6.4 0.00022 22.9 2.8 16 61-76 98-113 (159)
168 2ehe_A Four and A half LIM dom 64.6 4 0.00014 20.3 1.8 39 41-89 16-54 (82)
169 3f6q_B LIM and senescent cell 64.2 2.2 7.4E-05 20.5 0.7 40 40-89 11-50 (72)
170 1wev_A Riken cDNA 1110020M19; 63.3 2.7 9.3E-05 21.8 1.0 47 40-86 16-71 (88)
171 2d8y_A Eplin protein; LIM doma 62.9 5.6 0.00019 20.3 2.2 29 40-71 15-43 (91)
172 3vhs_A ATPase wrnip1; zinc fin 62.9 1.1 3.7E-05 17.9 -0.5 9 80-88 8-16 (29)
173 3o7a_A PHD finger protein 13 v 61.8 0.9 3.1E-05 21.1 -0.9 41 45-86 8-51 (52)
174 1a7i_A QCRP2 (LIM1); LIM domai 61.2 2 6.9E-05 21.4 0.3 11 42-52 9-19 (81)
175 2jne_A Hypothetical protein YF 60.3 3 0.0001 22.3 0.8 39 41-88 33-71 (101)
176 2fiy_A Protein FDHE homolog; F 60.0 0.69 2.4E-05 29.8 -2.0 48 38-86 180-230 (309)
177 2l3k_A Rhombotin-2, linker, LI 60.0 3.9 0.00013 22.3 1.3 33 41-75 37-69 (123)
178 2l4z_A DNA endonuclease RBBP8, 59.9 7.2 0.00025 21.3 2.4 38 41-89 62-99 (123)
179 2csz_A Synaptotagmin-like prot 59.6 5.8 0.0002 20.2 1.8 35 37-71 22-57 (76)
180 2egq_A FHL1 protein; LIM domai 59.5 2.7 9.4E-05 20.6 0.6 39 41-89 16-57 (77)
181 3kqi_A GRC5, PHD finger protei 57.4 10 0.00035 18.8 2.6 44 43-86 12-60 (75)
182 2cup_A Skeletal muscle LIM-pro 55.5 6.6 0.00023 20.3 1.7 44 41-89 34-77 (101)
183 2pv0_B DNA (cytosine-5)-methyl 54.6 10 0.00035 25.2 2.8 15 61-75 112-126 (386)
184 1wew_A DNA-binding family prot 53.1 17 0.00058 18.2 3.0 47 39-87 15-72 (78)
185 1m3v_A FLIN4, fusion of the LI 53.1 12 0.0004 20.2 2.5 47 41-89 33-80 (122)
186 2iyb_E Testin, TESS, TES; LIM 51.8 4.2 0.00014 19.3 0.5 37 42-88 4-42 (65)
187 2jrp_A Putative cytoplasmic pr 51.2 6.2 0.00021 20.3 1.1 12 41-52 3-14 (81)
188 2kpi_A Uncharacterized protein 49.8 6.5 0.00022 18.6 1.0 27 40-66 10-38 (56)
189 2d8v_A Zinc finger FYVE domain 49.6 11 0.00038 18.6 1.8 32 39-75 7-39 (67)
190 1j2o_A FLIN2, fusion of rhombo 49.3 10 0.00035 20.2 1.9 34 41-76 31-65 (114)
191 2lq6_A Bromodomain-containing 47.1 14 0.00048 19.0 2.1 36 38-74 15-51 (87)
192 2ct7_A Ring finger protein 31; 47.0 1.1 3.8E-05 23.1 -2.2 32 43-74 28-61 (86)
193 1loi_A Cyclic 3',5'-AMP specif 47.0 1.1 3.6E-05 17.5 -1.7 11 65-75 6-16 (26)
194 4gne_A Histone-lysine N-methyl 45.5 14 0.00046 20.0 2.0 33 36-72 11-45 (107)
195 2a20_A Regulating synaptic mem 45.5 18 0.00062 17.5 2.2 38 36-74 5-43 (62)
196 2jny_A Uncharacterized BCR; st 45.1 3.6 0.00012 20.4 -0.4 14 75-88 7-20 (67)
197 1l8d_A DNA double-strand break 43.3 5.5 0.00019 21.3 0.2 9 40-48 47-55 (112)
198 3kv5_D JMJC domain-containing 42.3 19 0.00065 24.7 2.7 45 41-86 38-87 (488)
199 2jtn_A LIM domain-binding prot 41.7 20 0.00069 20.7 2.5 14 40-53 60-73 (182)
200 1lko_A Rubrerythrin all-iron(I 41.5 9.4 0.00032 22.6 1.0 8 80-87 173-180 (191)
201 1rut_X Flinc4, fusion protein 41.1 9.7 0.00033 22.2 1.0 8 63-70 90-97 (188)
202 1b8t_A Protein (CRP1); LIM dom 40.3 18 0.00063 21.1 2.2 13 41-53 8-20 (192)
203 2rgt_A Fusion of LIM/homeobox 40.2 17 0.00058 20.7 2.0 43 41-89 34-76 (169)
204 2xjy_A Rhombotin-2; oncoprotei 38.2 19 0.00066 19.4 1.9 26 63-88 51-76 (131)
205 3c5k_A HD6, histone deacetylas 36.5 36 0.0012 18.3 2.8 25 40-68 24-48 (109)
206 2pk7_A Uncharacterized protein 35.4 20 0.00067 17.7 1.5 10 42-51 10-19 (69)
207 2vrw_B P95VAV, VAV1, proto-onc 35.4 31 0.0011 22.4 2.9 36 38-73 355-391 (406)
208 2das_A Zinc finger MYM-type pr 33.6 38 0.0013 16.4 2.2 37 39-75 19-56 (62)
209 2kdx_A HYPA, hydrogenase/ureas 32.8 19 0.00065 19.5 1.3 24 59-88 76-100 (119)
210 2jmi_A Protein YNG1, ING1 homo 32.1 15 0.00052 19.1 0.8 45 38-85 24-74 (90)
211 2vnf_A ING 4, P29ING4, inhibit 31.9 21 0.00072 16.9 1.2 43 39-86 9-58 (60)
212 1yuz_A Nigerythrin; rubrythrin 31.7 84 0.0029 18.7 4.1 9 79-87 187-195 (202)
213 3c6w_A P28ING5, inhibitor of g 31.2 22 0.00075 16.8 1.2 45 39-86 8-57 (59)
214 3pwf_A Rubrerythrin; non heme 30.0 84 0.0029 18.2 4.2 7 80-86 155-161 (170)
215 1wff_A Riken cDNA 2810002D23 p 28.0 62 0.0021 16.7 2.6 28 39-68 24-51 (85)
216 2rsd_A E3 SUMO-protein ligase 27.9 25 0.00086 17.0 1.1 46 39-86 9-64 (68)
217 4b6d_A RAC GTPase-activating p 27.6 43 0.0015 15.9 1.9 33 40-72 19-51 (61)
218 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.7 78 0.0027 16.7 3.4 28 60-87 6-44 (140)
219 2xqn_T Testin, TESS; metal-bin 26.7 19 0.00064 19.3 0.6 44 41-89 31-74 (126)
220 3ihp_A Ubiquitin carboxyl-term 25.3 70 0.0024 23.5 3.4 41 34-74 40-80 (854)
221 2jr6_A UPF0434 protein NMA0874 25.1 26 0.00089 17.2 0.9 11 41-51 9-19 (68)
222 2hf1_A Tetraacyldisaccharide-1 24.6 27 0.00092 17.2 0.9 11 41-51 9-19 (68)
223 2g6q_A Inhibitor of growth pro 24.4 35 0.0012 16.3 1.2 45 39-86 10-59 (62)
224 2g45_A Ubiquitin carboxyl-term 24.1 62 0.0021 18.0 2.4 24 40-67 34-57 (129)
225 4ayb_P DNA-directed RNA polyme 23.2 6.8 0.00023 18.0 -1.4 11 79-89 24-34 (48)
226 6rxn_A Rubredoxin; electron tr 22.6 29 0.00098 15.7 0.7 8 80-87 32-39 (46)
227 2uzg_A Ubiquitin carboxyl-term 21.7 51 0.0017 17.2 1.7 27 40-69 25-53 (97)
228 1wii_A Hypothetical UPF0222 pr 20.6 36 0.0012 17.6 0.9 9 78-86 23-31 (85)
229 2i50_A Ubiquitin carboxyl-term 20.4 36 0.0012 18.8 0.9 29 41-69 29-67 (126)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=92.84 Aligned_cols=62 Identities=35% Similarity=0.811 Sum_probs=49.8
Q ss_pred cccccccCCCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 28 NYKRQETTTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 28 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
.+.........++..|+||++.+..+..+.. ++|+|.||..|+..|+..+.+||+||.++..
T Consensus 11 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 11 SYRFNPNNHQSEQTLCVVCMCDFESRQLLRV-LPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CEEBCSSSCSSSCCEETTTTEECCBTCEEEE-ETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cEEecCccccCCCCCCeECCcccCCCCeEEE-ECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3333333445567789999999988876544 6899999999999999999999999998864
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.73 E-value=2.3e-18 Score=85.12 Aligned_cols=52 Identities=40% Similarity=0.935 Sum_probs=44.2
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
+++.+|+||++.+..++.+..+..|+|.||..|+..|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4567899999999887766553349999999999999999999999999874
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.73 E-value=4e-18 Score=84.16 Aligned_cols=52 Identities=37% Similarity=0.758 Sum_probs=44.7
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.++..|+||++.+..+....+.++|+|.||..|+..|+....+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 3567899999999776555566899999999999999998899999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=86.91 Aligned_cols=54 Identities=41% Similarity=0.890 Sum_probs=45.1
Q ss_pred CCCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 35 TTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.....+..|+||++.+..+..+.. ++|+|.||..|+..|+..+.+||+||..+.
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRR-LPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEE-eCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 344556789999999977655544 799999999999999999999999998875
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.6e-18 Score=88.07 Aligned_cols=54 Identities=37% Similarity=0.826 Sum_probs=46.1
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
....+..|+||++.+..+..+.+ ++|+|.||..|+..|+..+.+||+||.++.+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 34556789999999988876644 6899999999999999988899999998763
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.71 E-value=9.8e-18 Score=90.76 Aligned_cols=54 Identities=30% Similarity=0.735 Sum_probs=46.0
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
....+..|+||++.|..+..+.. ++|+|.||..|+..|+..+.+||+||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34456789999999988766544 7899999999999999999999999998864
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=1.1e-17 Score=88.03 Aligned_cols=54 Identities=41% Similarity=0.886 Sum_probs=45.8
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
....+..|+||++.|..+..+.. ++|+|.||..|+..|+..+.+||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQ-LPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEE-CTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEE-eCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 34556789999999988765544 7899999999999999988999999998753
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.68 E-value=1.9e-17 Score=85.60 Aligned_cols=55 Identities=27% Similarity=0.629 Sum_probs=45.3
Q ss_pred CCCcccccccccccccCC---cceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADD---ETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
...++..|+||++.+..+ ....+.++|||.||..|+..|+..+.+||+||.++..
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 345567899999999765 2333558999999999999999999999999998753
No 9
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=84.09 Aligned_cols=55 Identities=27% Similarity=0.629 Sum_probs=45.2
Q ss_pred CCCcccccccccccccCC---cceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADD---ETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
...+...|+||++.+..+ ....++++|||.||..|+..|+..+.+||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 445567899999999765 2333558999999999999999989999999998764
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.8e-17 Score=84.63 Aligned_cols=50 Identities=36% Similarity=0.717 Sum_probs=43.3
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...++..|+||++.+..+ +.++|+|.||..|+..|+.....||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred cCCCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345567899999999776 55799999999999999998899999999874
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.65 E-value=1.2e-16 Score=89.44 Aligned_cols=50 Identities=30% Similarity=0.668 Sum_probs=40.7
Q ss_pred ccccccccccccCCc--------------ceeeeCCCCchhhHhhHHHHH-----hcCCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDE--------------TCRIFLVCNHIFHLNCIDGWL-----EINLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~--------------~~~~~~~C~H~f~~~C~~~w~-----~~~~~CP~Cr~~i~ 89 (91)
+..|+||++.|..+. .+..+++|+|.||..||..|+ ..+.+||+||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999996643 233468999999999999999 44678999998775
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=82.57 Aligned_cols=51 Identities=24% Similarity=0.450 Sum_probs=43.8
Q ss_pred CCCCcccccccccccccCCcceeee-CCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 35 TTSSSSSGCAICLETFADDETCRIF-LVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
....+...|+||++.+..+ +. ++|||.||..|+..|+..+..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDA----TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSC----EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hhcCCCCCCCCCChHHHCc----CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 4445678899999999886 44 499999999999999988899999999875
No 13
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-17 Score=86.36 Aligned_cols=51 Identities=33% Similarity=0.782 Sum_probs=41.2
Q ss_pred cccccccccccccC-----------CcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFAD-----------DETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
++..|+||++.+.. .+.+.++++|+|.||..||..|+..+.+||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 45568888888864 2334454579999999999999999999999999875
No 14
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.65 E-value=2.1e-17 Score=95.49 Aligned_cols=47 Identities=36% Similarity=0.897 Sum_probs=42.0
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
++..|+||++.+..+ ++++|||.||..|+..|+..+.+||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc----eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356799999999877 66899999999999999999999999999874
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=84.48 Aligned_cols=50 Identities=20% Similarity=0.461 Sum_probs=43.4
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.......|+||++.+..+ ++++|||.||..|+..|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344567899999999876 56899999999999999998899999998864
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=79.79 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=43.0
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh-cCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-INLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-~~~~CP~Cr~~i~~ 90 (91)
...+...|+||++.+..+ +.++|||.||..|+..|+. ....||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSC----CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCe----eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 345568899999999887 5579999999999999994 56789999998753
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=80.69 Aligned_cols=52 Identities=27% Similarity=0.636 Sum_probs=43.1
Q ss_pred cccccccccccccCC---cceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 39 SSSGCAICLETFADD---ETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
++..|+||++.+..+ ....+.++|||.||..|+..|+..+.+||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 456899999999764 2333457999999999999999999999999998763
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=81.75 Aligned_cols=51 Identities=24% Similarity=0.516 Sum_probs=43.2
Q ss_pred CCCCcccccccccccccCCcceeeeCC-CCchhhHhhHHHHHhcC--CCCccCCCCCC
Q 045184 35 TTSSSSSGCAICLETFADDETCRIFLV-CNHIFHLNCIDGWLEIN--LTCPLCRNCIL 89 (91)
Q Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~C~~~w~~~~--~~CP~Cr~~i~ 89 (91)
....++..|+||++.+..+ +.++ |||.||..|+..|+... ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTC----EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCC----eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3445678899999999987 6688 99999999999999764 68999998754
No 19
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.62 E-value=3.1e-16 Score=87.01 Aligned_cols=50 Identities=38% Similarity=0.767 Sum_probs=41.6
Q ss_pred cccccccccccccCC--------------cceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 39 SSSGCAICLETFADD--------------ETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
++..|+||++.|..+ +...++++|+|.||..||..|+..+.+||+||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 456799999998754 12335579999999999999999999999999874
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.8e-16 Score=83.22 Aligned_cols=55 Identities=24% Similarity=0.647 Sum_probs=44.9
Q ss_pred CCCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC---CCCccCCCCCC
Q 045184 35 TTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN---LTCPLCRNCIL 89 (91)
Q Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~---~~CP~Cr~~i~ 89 (91)
....+...|+||++.|.......+.++|||.||..|+..|+... ..||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 34455678999999998855434668999999999999999875 78999998764
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=7.2e-16 Score=79.99 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=42.7
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh---cCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE---INLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~---~~~~CP~Cr~~i~~ 90 (91)
...+...|+||++.+..+ +.++|||.||..|+..|+. ....||+||..+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345567899999999876 5579999999999999996 45689999998753
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.61 E-value=4.8e-16 Score=79.69 Aligned_cols=48 Identities=38% Similarity=0.812 Sum_probs=41.3
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.+..|+||++.+..+. +.++|||.||..|+..|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~---~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYS---MALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCE---EETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCc---EecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 4567999999987642 45899999999999999998999999998764
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.60 E-value=8.2e-16 Score=80.78 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-CCCCccCCCCCC
Q 045184 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-NLTCPLCRNCIL 89 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-~~~CP~Cr~~i~ 89 (91)
..+...|+||++.+..+ +.++|||.||..|+..|+.. ..+||+||.++.
T Consensus 5 ~~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CSSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred CcccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45577899999999888 55799999999999999986 778999998874
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.59 E-value=1.1e-15 Score=77.72 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=42.0
Q ss_pred cccccccccc-cccCCcceeeeCCCCchhhHhhHHHHHhc-CCCCccCCCCCC
Q 045184 39 SSSGCAICLE-TFADDETCRIFLVCNHIFHLNCIDGWLEI-NLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-~~~CP~Cr~~i~ 89 (91)
++..|+||++ .+..+....++++|||.||..|+..|+.. ...||+||.++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3567999999 88887654455899999999999999754 567999999875
No 25
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-16 Score=81.28 Aligned_cols=49 Identities=35% Similarity=0.860 Sum_probs=41.9
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...+...|+||++.+.. +.++|+|.||..|+..|+.....||+||.++.
T Consensus 11 ~~~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred cCCCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 34456789999999876 34799999999999999998999999998775
No 26
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.58 E-value=5.5e-16 Score=85.13 Aligned_cols=48 Identities=29% Similarity=0.734 Sum_probs=41.8
Q ss_pred CcccccccccccccCCcceeee-CCCCchhhHhhHHHHHhcC-CCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIF-LVCNHIFHLNCIDGWLEIN-LTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~C~~~w~~~~-~~CP~Cr~~i~ 89 (91)
.+...|+||++.+..+ +. ++|||.||..||..|+... ..||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p----~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA----RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCc----cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3456799999999877 55 8999999999999999877 69999998864
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=2.1e-15 Score=80.04 Aligned_cols=50 Identities=32% Similarity=0.581 Sum_probs=42.8
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc------CCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI------NLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~------~~~CP~Cr~~i~ 89 (91)
...++..|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 345567899999999887 56899999999999999976 668999998875
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.57 E-value=5.9e-16 Score=81.38 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=42.6
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-------CCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-------NLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-------~~~CP~Cr~~i~ 89 (91)
...++..|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 445678899999999887 55799999999999999976 568999998874
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=81.35 Aligned_cols=50 Identities=24% Similarity=0.514 Sum_probs=42.6
Q ss_pred CCCCcccccccccccccCCcceeeeCC-CCchhhHhhHHHHHhc--CCCCccCCCCC
Q 045184 35 TTSSSSSGCAICLETFADDETCRIFLV-CNHIFHLNCIDGWLEI--NLTCPLCRNCI 88 (91)
Q Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~C~~~w~~~--~~~CP~Cr~~i 88 (91)
....++..|+||++.|..+ +.++ |||.||..||..|+.. ...||+||.++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3445678899999999988 6688 9999999999999864 35899999986
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=75.28 Aligned_cols=45 Identities=33% Similarity=0.707 Sum_probs=38.6
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh---cCCCCccC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE---INLTCPLC 84 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~---~~~~CP~C 84 (91)
...++..|+||++.+..+ +.++|||.||..|+..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 445677899999999887 6679999999999999997 45689998
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-15 Score=79.51 Aligned_cols=50 Identities=28% Similarity=0.641 Sum_probs=42.8
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc------CCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI------NLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~------~~~CP~Cr~~i~ 89 (91)
...+...|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQP----LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSC----BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCc----eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 345567899999999887 55799999999999999976 778999998765
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=82.40 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=41.2
Q ss_pred cccccccccccccCCcceeeeC-CCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFL-VCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
+...|+||++.+..+ +.+ +|||.||..|+..|+..+..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIA----MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCc----CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 456799999999886 444 89999999999999998899999998764
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.54 E-value=2.2e-15 Score=85.83 Aligned_cols=52 Identities=29% Similarity=0.662 Sum_probs=43.8
Q ss_pred CcccccccccccccCC---cceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADD---ETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.++..|+||++.+..+ ....+.++|||.||..|+..|+..+.+||+||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 4567899999999775 333355899999999999999999999999998875
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.2e-15 Score=73.48 Aligned_cols=45 Identities=31% Similarity=0.926 Sum_probs=37.7
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh---cCCCCccC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE---INLTCPLC 84 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~---~~~~CP~C 84 (91)
...+...|+||++.+..+ +.++|||.||..|+..|+. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 345567899999999887 5589999999999999954 46789998
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=85.04 Aligned_cols=48 Identities=27% Similarity=0.579 Sum_probs=41.2
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC-CCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~-~~CP~Cr~~i~ 89 (91)
.++..|+||++.+..+ +.++|||.||..|+..|+... ..||+||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 3456799999999987 668999999999999999754 48999999875
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.54 E-value=3.7e-15 Score=82.75 Aligned_cols=48 Identities=29% Similarity=0.619 Sum_probs=41.9
Q ss_pred CcccccccccccccCCcceeee-CCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIF-LVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.++..|+||++.+..+ +. ++|||.||..|+..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA----TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGGTBCTTTSSBCSSE----EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCcCCCccCChHHhCc----CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4467899999999876 44 499999999999999998899999998875
No 37
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.53 E-value=5.2e-15 Score=83.35 Aligned_cols=52 Identities=25% Similarity=0.478 Sum_probs=44.2
Q ss_pred cCCCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCC-CCccCCCCCC
Q 045184 34 TTTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINL-TCPLCRNCIL 89 (91)
Q Consensus 34 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~-~CP~Cr~~i~ 89 (91)
.....+...|+||++.+..+ +.++|||.||..|+..|+.... .||+||.++.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 12 DPPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred ccCCCCCCCCCcCChhhcCe----EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 34556678999999999887 5579999999999999997754 8999998865
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.52 E-value=1e-15 Score=86.13 Aligned_cols=50 Identities=38% Similarity=0.767 Sum_probs=0.9
Q ss_pred cccccccccccccCC-------------c-ceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 39 SSSGCAICLETFADD-------------E-TCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~-------------~-~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
.+..|+||++.|..+ + ...+.++|+|.||..||..|+..+.+||+||.++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 356799999999753 1 1223468999999999999999999999999874
No 39
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=76.67 Aligned_cols=52 Identities=29% Similarity=0.672 Sum_probs=41.6
Q ss_pred CCCcccccccccccccCCcceeeeCCCC-----chhhHhhHHHHHhcC--CCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCN-----HIFHLNCIDGWLEIN--LTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~C~~~w~~~~--~~CP~Cr~~i~ 89 (91)
...++..|.||++.+...+.+ ++||+ |.||..||.+|+..+ .+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 344556899999998765553 47996 999999999999764 58999998764
No 40
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.50 E-value=2.5e-14 Score=75.33 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=40.7
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh-cCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-INLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-~~~~CP~Cr~~i~~ 90 (91)
...++..|+||++.+...+....-++|||.||..|+..+.. ....||+||.++..
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34567889999998864433212135999999999999874 35689999998753
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.50 E-value=4.2e-15 Score=86.97 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=41.1
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCC-CCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINL-TCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~-~CP~Cr~~i~ 89 (91)
+...|+||++.+..+ +.++|||.||..|+..|+.... .||+||.++.
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 456899999999887 6689999999999999998654 8999999875
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.49 E-value=2.9e-15 Score=83.94 Aligned_cols=50 Identities=34% Similarity=0.767 Sum_probs=42.5
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-CCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-NLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-~~~CP~Cr~~i~ 89 (91)
...++..|+||++.+..+ +.++|||.||..|+..|+.. ...||+||..+.
T Consensus 11 ~~~~~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 11 PSLSECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CCHHHHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 445567899999999887 66899999999999999976 668999998763
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.49 E-value=1.2e-14 Score=80.94 Aligned_cols=46 Identities=37% Similarity=0.750 Sum_probs=39.8
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC---CCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN---LTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~---~~CP~Cr~~i~ 89 (91)
...|+||++.+..+ +.++|||.||..|+..|+... ..||+||.++.
T Consensus 21 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 45799999999887 557999999999999999764 48999998775
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.47 E-value=1.3e-14 Score=85.91 Aligned_cols=48 Identities=33% Similarity=0.640 Sum_probs=40.5
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-CCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-NLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-~~~CP~Cr~~i~ 89 (91)
+...|+||++.+..+ ..+++|||.||..|+..|+.. ...||+||.++.
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 456899999999876 222499999999999999987 778999998874
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.46 E-value=5.5e-14 Score=75.09 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=44.5
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...+...|+||++.|..| ++++|||+|+..||..|+....+||+|+.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCC----eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 345578899999999999 77899999999999999988889999998764
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.46 E-value=2.3e-14 Score=80.41 Aligned_cols=47 Identities=34% Similarity=0.678 Sum_probs=41.3
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-CCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-NLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-~~~CP~Cr~~i~ 89 (91)
++..|+||++.+..+ +.++|||.||..|+..|+.. ...||+||.++.
T Consensus 22 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 456799999999887 55899999999999999986 678999998864
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.44 E-value=2.8e-14 Score=81.21 Aligned_cols=53 Identities=28% Similarity=0.652 Sum_probs=43.9
Q ss_pred CCcccccccccccccCC---cceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 37 SSSSSGCAICLETFADD---ETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..+...|+||++.+..+ ....+.++|||.||..|+..|+....+||+||.++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34567899999998764 223345799999999999999999999999999875
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.44 E-value=8.2e-14 Score=76.49 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=44.5
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...+...|+||++.|.+| +.++|||+|+..||..|+....+||+|+.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 345578899999999999 77899999999999999988889999998875
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.44 E-value=4e-14 Score=71.92 Aligned_cols=48 Identities=23% Similarity=0.515 Sum_probs=40.3
Q ss_pred CcccccccccccccCCcceeeeC--CCCch-hhHhhHHHHHhcCCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFL--VCNHI-FHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~-f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.++..|+||++...+. +++ ||||. ||..|+..|...+..||+||.++.
T Consensus 6 ~~~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG----CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCE----EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCE----EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3566799999987665 434 99998 899999999988889999999874
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.42 E-value=5.7e-14 Score=71.12 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=40.1
Q ss_pred CcccccccccccccCCcceeeeCCCCch-hhHhhHHHHHhcCCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHI-FHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
+.+..|+||++...+. +.+.+||||. ||..|+..|......||+||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4456799999986554 1123499997 999999999988889999999875
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.41 E-value=2.6e-13 Score=74.26 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=44.1
Q ss_pred CCcccccccccccccCCcceeeeCCCC-chhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 37 SSSSSGCAICLETFADDETCRIFLVCN-HIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..+...|+||++.|.+| ++++|| |+|+..||..|+....+||+||.++.
T Consensus 19 ~p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CCTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred CcHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 34567899999999999 778999 99999999999988889999998875
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.40 E-value=4.2e-14 Score=81.98 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=42.1
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCC-CCccCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINL-TCPLCRNCI 88 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~-~CP~Cr~~i 88 (91)
...+...|+||++.+..+ +.++|||.||..||..|+.... .||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~p----v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP----FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc----EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 445678899999999988 5589999999999999997654 899999864
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=6.4e-14 Score=69.35 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=38.0
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
.+...|+||++.+..+ +.++|||.||..|+.. ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA---SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS---SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc---CCCCCCcCCcEee
Confidence 4456799999999987 5689999999999977 3568999998865
No 54
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-13 Score=70.07 Aligned_cols=49 Identities=24% Similarity=0.674 Sum_probs=40.6
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC--CCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN--LTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~--~~CP~Cr~~i~ 89 (91)
+...+|+||++.+..+... ..|+|.||..||.+|++.+ .+||+||..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3456799999999866432 4899999999999999876 78999998764
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.38 E-value=2.4e-13 Score=80.69 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=44.2
Q ss_pred cCCCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC-CCCccCCCCCC
Q 045184 34 TTTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCRNCIL 89 (91)
Q Consensus 34 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~-~~CP~Cr~~i~ 89 (91)
.....+...|+||++.+..+ +.++|||.||..|+..|+... ..||+||.++.
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred ccCCCCCCCCCCCChhhcCc----EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 44556778999999999888 558999999999999999764 48999998875
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=6.8e-14 Score=78.63 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=39.4
Q ss_pred cccccccccccccCCcceeeeC-CCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFL-VCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
+...|+||++.+..+ +.+ +|||.||..|+..|+. ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p----v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP----VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC----BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc----cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 456799999999888 556 9999999999999987 78999998764
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.35 E-value=4e-13 Score=88.45 Aligned_cols=45 Identities=33% Similarity=0.722 Sum_probs=40.1
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHh-cCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-INLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-~~~~CP~Cr~~i~ 89 (91)
..|+||++.+..+ +.+||||.||..|+..|+. ....||+||.++.
T Consensus 333 ~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 333 QLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 5799999998776 6689999999999999998 6789999999864
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.35 E-value=1.1e-13 Score=72.16 Aligned_cols=43 Identities=26% Similarity=0.683 Sum_probs=37.2
Q ss_pred cccccccccccccCCcceeeeCCCCch-hhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHI-FHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
++..|+||++.+.++ +++||||. ||..|+..| ..||+||.++.
T Consensus 23 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 346799999998776 66899999 999999988 78999999875
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.32 E-value=3.6e-12 Score=80.21 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=43.0
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-CCCCccCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-NLTCPLCRNCIL 89 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-~~~CP~Cr~~i~ 89 (91)
...+...|+||++.|..| ++++|||+||..||..|+.. ..+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 444677899999999999 77899999999999999976 445999999875
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.8e-12 Score=64.88 Aligned_cols=47 Identities=23% Similarity=0.672 Sum_probs=38.2
Q ss_pred CCCcccccccccccccCCcceeeeCCCCch-hhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHI-FHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
...+...|.||++..... +++||||. ||..|+.. ...||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW----VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC----EETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE----EEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999987766 77999998 99999984 4789999998753
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=67.91 Aligned_cols=43 Identities=26% Similarity=0.650 Sum_probs=36.0
Q ss_pred ccccccccccccCCcceeeeCCCCch-hhHhhHHHHHhcCCCCccCCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHI-FHLNCIDGWLEINLTCPLCRNCILD 90 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~C~~~w~~~~~~CP~Cr~~i~~ 90 (91)
+..|+||++.+..+ +++||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45699999998777 66899999 99999964 3789999988753
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.9e-12 Score=68.98 Aligned_cols=47 Identities=26% Similarity=0.478 Sum_probs=39.3
Q ss_pred CCcccccccccccccCCcceeeeCC-CCchhhHhhHHHHHhcC------CCCcc--CCCC
Q 045184 37 SSSSSGCAICLETFADDETCRIFLV-CNHIFHLNCIDGWLEIN------LTCPL--CRNC 87 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~C~~~w~~~~------~~CP~--Cr~~ 87 (91)
......|+||++.|.+| +.++ |||+|+..||..|+... .+||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34567899999999998 6675 99999999999999653 48999 8754
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.22 E-value=3.1e-11 Score=72.27 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC-CCCccCCCCCC
Q 045184 35 TTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN-LTCPLCRNCIL 89 (91)
Q Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~-~~CP~Cr~~i~ 89 (91)
....+...||||++.|..| ++++|||+|+..||..|+... .+||+|+.++.
T Consensus 101 ~~ip~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 101 REIPDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCcHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3445678899999999998 778999999999999999763 46999998764
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.17 E-value=2.9e-12 Score=67.49 Aligned_cols=42 Identities=26% Similarity=0.649 Sum_probs=35.4
Q ss_pred ccccccccccccCCcceeeeCCCCch-hhHhhHHHHHhcCCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHI-FHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
+..|+||++.+..+ +++||||. ||..|+..| ..||+||.++.
T Consensus 18 ~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 45799999987766 66899998 999999876 38999998764
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=3.5e-11 Score=65.07 Aligned_cols=49 Identities=31% Similarity=0.790 Sum_probs=38.4
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc--------CCCCcc--CCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI--------NLTCPL--CRNC 87 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~--------~~~CP~--Cr~~ 87 (91)
.+..+|+||++.+..+..+ .+.+|||.||..|+..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3467899999998776543 33589999999999999853 236999 9887
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.06 E-value=2.8e-11 Score=78.51 Aligned_cols=52 Identities=21% Similarity=0.510 Sum_probs=39.4
Q ss_pred CcccccccccccccCCccee----eeCCCCchhhHhhHHHHHhcC-----------CCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCR----IFLVCNHIFHLNCIDGWLEIN-----------LTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~----~~~~C~H~f~~~C~~~w~~~~-----------~~CP~Cr~~i~ 89 (91)
+...+|+||++.+.....+. ....|+|.||..|+..|+... .+||.||.+|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45678999999987733221 124799999999999999641 46999998764
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.05 E-value=1.8e-10 Score=57.63 Aligned_cols=48 Identities=29% Similarity=0.699 Sum_probs=36.4
Q ss_pred CcccccccccccccCCcceeeeCCCC--c---hhhHhhHHHHHhc--CCCCccCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCN--H---IFHLNCIDGWLEI--NLTCPLCRNCIL 89 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~--H---~f~~~C~~~w~~~--~~~CP~Cr~~i~ 89 (91)
++...|.||++....+ ..+||. + .||..|+.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~----l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE----RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC----CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc----eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3456799999974332 237865 4 8999999999964 678999998763
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.02 E-value=3.3e-11 Score=78.55 Aligned_cols=42 Identities=26% Similarity=0.800 Sum_probs=36.8
Q ss_pred ccccccccccccCCcceeeeCCCCch-hhHhhHHHHHhcCCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHI-FHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
+..|+||++.+..+ +.+||||. ||..|+..| ..||+||.++.
T Consensus 295 ~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCccCCcCCce----EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45799999998877 66899999 999999987 68999999875
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2e-10 Score=72.10 Aligned_cols=47 Identities=23% Similarity=0.579 Sum_probs=39.1
Q ss_pred cccccccccccccCCcceeee-CCCCchhhHhhHHHHHhcC--CCCcc--CCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIF-LVCNHIFHLNCIDGWLEIN--LTCPL--CRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~C~~~w~~~~--~~CP~--Cr~~i~ 89 (91)
....||||++.|..| +. ..|||+|+..||..|+... ..||+ |+..+.
T Consensus 180 ~el~CPIcl~~f~DP----Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAP----LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSE----EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCC----eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 346799999999998 54 5899999999999998753 46999 998653
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.88 E-value=5.3e-10 Score=56.03 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=40.2
Q ss_pred ccccccccccccCCcceeeeC-CCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFL-VCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...|+|+.+.+.+| +++ ++||+|.+.||..|+..+.+||+.+.++.
T Consensus 3 ~~~CpIs~~~m~dP----V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRP----VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSE----EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred eEEecCCCCCCCCC----EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 35799999999988 556 89999999999999988888999998774
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.67 E-value=9.4e-09 Score=55.69 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=35.0
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHh-cCCCCccCCCCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-INLTCPLCRNCIL 89 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-~~~~CP~Cr~~i~ 89 (91)
-|++|--++..-. .+.||.|+||.+|+..|.+ ..++||.|+.++.
T Consensus 3 fC~~C~~Pi~iyg---RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYG---RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEE---EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEe---eeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4777766665432 3479999999999999975 4788999998874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.21 E-value=6.9e-07 Score=55.61 Aligned_cols=47 Identities=23% Similarity=0.605 Sum_probs=37.9
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC--CCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN--LTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~--~~CP~Cr~~i~ 89 (91)
-..|.||.+....+.. ...|+|.||..|+..|++.. ..||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~---C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQS---CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEE---CSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcc---cCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 5579999999887632 24599999999999999764 48999988754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.91 E-value=0.00021 Score=38.22 Aligned_cols=45 Identities=27% Similarity=0.636 Sum_probs=35.7
Q ss_pred cccccccccccccCCcceeeeCCCC-chhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCN-HIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
....|-.|+-.... . ..|. |.+|..|+...+..+..||+|..+++
T Consensus 27 G~~nCKsCWf~~k~-----L-V~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENKG-----L-VECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCSS-----E-EECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccCC-----e-eeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 44669999876432 2 3466 99999999999999999999998876
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.66 E-value=0.0013 Score=35.35 Aligned_cols=34 Identities=18% Similarity=0.438 Sum_probs=24.6
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGW 74 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w 74 (91)
+..|+||.+.+..+.. ...+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av-~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAV-KTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCC-EEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCce-EECCcCChHHhHHHCHHH
Confidence 4679999976433211 123789999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.91 E-value=0.0085 Score=29.97 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcC----CCCccCCCC
Q 045184 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEIN----LTCPLCRNC 87 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~----~~CP~Cr~~ 87 (91)
...+..|.||.+. ..+...-.|...||..|+...+... -.||.|...
T Consensus 9 ~~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3345679999753 2343446788999999998766442 359999754
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=95.51 E-value=0.019 Score=42.12 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=43.9
Q ss_pred CCCCcccccccccccccCCcceeeeCCCC-chhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 35 TTSSSSSGCAICLETFADDETCRIFLVCN-HIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
....+...|||-.+.+.+| +.+|-| +.|-+..|..|+..+.+||+=|.++.
T Consensus 886 ~~iP~~F~cPIs~~lM~DP----VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDP----VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCcHHhCCcchhhHHhCC----eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 3445678899999999999 778987 58999999999998889999888764
No 77
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=94.96 E-value=0.021 Score=32.47 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=24.8
Q ss_pred CcccccccccccccC-CcceeeeCCCCchhhHhhHH
Q 045184 38 SSSSGCAICLETFAD-DETCRIFLVCNHIFHLNCID 72 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~C~~ 72 (91)
.+...|.+|..+|.- ...-.....|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 456789999999842 22223446799999988864
No 78
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=94.34 E-value=0.031 Score=27.80 Aligned_cols=36 Identities=28% Similarity=0.582 Sum_probs=25.8
Q ss_pred CCcccccccccccccCCcceeeeC-CCCchhhHhhHH
Q 045184 37 SSSSSGCAICLETFADDETCRIFL-VCNHIFHLNCID 72 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~C~~ 72 (91)
......|++|..++......+..- .|.-.||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 344567999999987766555556 788999999984
No 79
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=94.21 E-value=0.048 Score=31.67 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=24.4
Q ss_pred CcccccccccccccCCc-ceeeeCCCCchhhHhhH
Q 045184 38 SSSSGCAICLETFADDE-TCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~C~ 71 (91)
.++..|.+|..+|.--. .-.....|.|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 45788999999875322 11234679999999997
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=94.01 E-value=0.014 Score=28.61 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=31.5
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRNCILD 90 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~~i~~ 90 (91)
.++..|.+|.+. ..+...-.|...||..|+..-+.. .-.||.|......
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 445679999752 223233468889999999853322 2359999776543
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.60 E-value=0.041 Score=27.01 Aligned_cols=51 Identities=33% Similarity=0.570 Sum_probs=34.5
Q ss_pred CCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh-----cCCCCccCCCC
Q 045184 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-----INLTCPLCRNC 87 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-----~~~~CP~Cr~~ 87 (91)
..+...|++|...+......+..-.|..-||..|+.--.. ....||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3455679999998765544444457888999999863221 24569999643
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.37 E-value=0.019 Score=29.17 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCCCC
Q 045184 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRNCI 88 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~~i 88 (91)
..+...|.||..... +...+..-.|...||..|+..-... .-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 344566999987753 3334344578899999999754322 34599997544
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.06 E-value=0.055 Score=26.44 Aligned_cols=46 Identities=22% Similarity=0.633 Sum_probs=30.6
Q ss_pred CCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
...+..|.+|... ..+...-.|...||..|+..-+.. .-.||.|..
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3445679999863 233344578889999999864322 235999965
No 84
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=92.13 E-value=0.12 Score=27.14 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCcccccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 37 SSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
..+...|.+|...|..-..--....||.+||..|...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3445679999999875543334467999999988754
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=92.06 E-value=0.16 Score=23.90 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=29.0
Q ss_pred ccccccccccCCcceeeeC-CCCchhhHhhHHHH----HhcCCCCccCC
Q 045184 42 GCAICLETFADDETCRIFL-VCNHIFHLNCIDGW----LEINLTCPLCR 85 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~-~C~H~f~~~C~~~w----~~~~~~CP~Cr 85 (91)
.|.+|..++..+...+..- .|..-||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778888876555444445 58889999997521 12466788884
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.05 E-value=0.41 Score=25.26 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=34.6
Q ss_pred cccccccccccccCC---cceeeeCCCCchhhHhhHHHHHh-cCCCCccCCCCC
Q 045184 39 SSSGCAICLETFADD---ETCRIFLVCNHIFHLNCIDGWLE-INLTCPLCRNCI 88 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~f~~~C~~~w~~-~~~~CP~Cr~~i 88 (91)
....|.||-+.+... +..+..-.|+-..|..|..-=.+ .+..||.|+..+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 456899999987533 23333345777889999875443 477899998765
No 87
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.36 E-value=0.23 Score=26.00 Aligned_cols=34 Identities=21% Similarity=0.508 Sum_probs=22.1
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHH
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGW 74 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w 74 (91)
.+..|.||-.- ...... -..-|+.+||..|+.+.
T Consensus 14 ~D~~C~VC~~~-t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-ccccee-ccccccccccHhhcccc
Confidence 56779999643 222111 11347899999999986
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=91.34 E-value=0.12 Score=28.95 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=25.4
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
...|.+|...|..-..--....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3569999999875443334468999999999754
No 89
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=91.10 E-value=0.15 Score=26.27 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=25.3
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
...|.+|...|..-..--....||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4569999999875443334467999999999764
No 90
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.08 E-value=0.24 Score=25.29 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=30.9
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHH-----hcCCCCccCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWL-----EINLTCPLCRNC 87 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~-----~~~~~CP~Cr~~ 87 (91)
...| ||...+......+..-.|..-||..|+.--. .....||.|+..
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 3446 8988875444444445788899999985221 134579999764
No 91
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=90.94 E-value=0.17 Score=26.25 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=26.0
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
+...|.+|...|..-.+--....||.+||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 34579999999875443334467999999999754
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.88 E-value=0.021 Score=27.45 Aligned_cols=47 Identities=26% Similarity=0.704 Sum_probs=30.0
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
...++..|.+|... ..+...-.|...||..|+.+-+.. .-.||.|..
T Consensus 5 ~~~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34556679999874 233344578889999999753322 224777743
No 93
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=90.46 E-value=0.18 Score=25.37 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=24.5
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
..|.+|...|..-.+--....||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999875433334467999999999753
No 94
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=90.45 E-value=0.021 Score=31.87 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=28.4
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLC 84 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~C 84 (91)
...|..|...|..-.+--....||.+||..|..........|-.|
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 357999999987543333457899999999976544334445444
No 95
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.97 E-value=0.19 Score=26.00 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=24.8
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
...|.+|...|..-.+--....||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4569999999865433223467999999999653
No 96
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=89.95 E-value=0.17 Score=24.66 Aligned_cols=43 Identities=23% Similarity=0.495 Sum_probs=30.0
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLC 84 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~C 84 (91)
..|..|...+..... .....|++.||.+|=.-....-.+||.|
T Consensus 16 ~~C~~C~~~~~~~~~-y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHV-YVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEE-ECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCcc-EECCccCcCcccchhHHHHhhccCCcCC
Confidence 349999998854322 2346799999999965443445579987
No 97
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.90 E-value=1.2 Score=23.08 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=28.4
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI 77 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~ 77 (91)
.....|.+|.+.++....+.--..=.|.||..|-+..++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4456799999999876543221224599999999988754
No 98
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.83 E-value=0.073 Score=32.15 Aligned_cols=45 Identities=27% Similarity=0.576 Sum_probs=29.9
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRNC 87 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~~ 87 (91)
.+..|.+|... ..+...-.|...||..|+.+-+.. .-.||.|+..
T Consensus 6 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 44569999743 233344568899999999764432 2359999753
No 99
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=89.82 E-value=0.3 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=25.8
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGW 74 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w 74 (91)
...|.+|...|..-..--....||++||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45699999998754333344689999999997643
No 100
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.74 E-value=0.073 Score=31.51 Aligned_cols=45 Identities=27% Similarity=0.585 Sum_probs=29.8
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRNC 87 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~~ 87 (91)
++..|.+|... + .+...-.|...||..|+.+-+.. .-.||.|+..
T Consensus 3 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 34569999743 2 23344568889999998764432 2359999753
No 101
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.33 E-value=0.2 Score=27.19 Aligned_cols=47 Identities=23% Similarity=0.470 Sum_probs=32.1
Q ss_pred ccccccccccccCCcceeeeC-CCCchhhHhhHHHHH----h------cCCCCccCCC
Q 045184 40 SSGCAICLETFADDETCRIFL-VCNHIFHLNCIDGWL----E------INLTCPLCRN 86 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~C~~~w~----~------~~~~CP~Cr~ 86 (91)
...|++|..++......+..- .|...||..|+.--. . ....||.|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 456999999986655554444 688899999985211 0 2446999864
No 102
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.89 E-value=0.2 Score=23.30 Aligned_cols=44 Identities=30% Similarity=0.643 Sum_probs=28.0
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
.|.||...-. +..+...-.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4788876532 2233344678899999999753322 224998865
No 103
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.67 E-value=0.24 Score=29.53 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=34.6
Q ss_pred ccccccccccccCCcc---eeeeCCCCchhhHhhHHHH------Hh-----cCCCCccCCCCC
Q 045184 40 SSGCAICLETFADDET---CRIFLVCNHIFHLNCIDGW------LE-----INLTCPLCRNCI 88 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~---~~~~~~C~H~f~~~C~~~w------~~-----~~~~CP~Cr~~i 88 (91)
+..|+||...|..++. .+..-.|...||..|..-- +. ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3569999999987753 4444678899999998421 11 156899998653
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.49 E-value=1 Score=24.42 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=23.4
Q ss_pred cccccccccccc-----cCCcceeeeCCCCchhhHhhHH
Q 045184 39 SSSGCAICLETF-----ADDETCRIFLVCNHIFHLNCID 72 (91)
Q Consensus 39 ~~~~C~IC~~~~-----~~~~~~~~~~~C~H~f~~~C~~ 72 (91)
....|.+|...- ..++.+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 345699998753 1233444556799999999995
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.24 E-value=0.19 Score=26.50 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=31.1
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
...++..|.+|... + .+...-.|.-.||..|+.+=+.. .-.||.|..
T Consensus 21 ~d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 21 LDDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred cCCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 34455679999864 2 33344568889999999764432 225999964
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=88.14 E-value=0.27 Score=24.05 Aligned_cols=51 Identities=25% Similarity=0.502 Sum_probs=32.6
Q ss_pred CCcccccccccccccC-CcceeeeCCCCchhhHhhHHHHHh-------cCCCCccCCCC
Q 045184 37 SSSSSGCAICLETFAD-DETCRIFLVCNHIFHLNCIDGWLE-------INLTCPLCRNC 87 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~C~~~w~~-------~~~~CP~Cr~~ 87 (91)
..++..|.||...... ...+...-.|...||..|+..-+. ..-.||.|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3456779999986533 234434467888999999875221 22358888543
No 107
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=88.11 E-value=0.22 Score=30.28 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=25.6
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
+..|.+|...|..-.+--....||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4679999999875443334578999999999754
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.61 E-value=0.14 Score=28.01 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=28.4
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
.|.+|...-.....+...-.|...||..|+.+-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 477787643333344344568899999999754432 225888864
No 109
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.27 E-value=0.47 Score=29.06 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=25.8
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
+..|.+|...|..-.+--....||.+||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4579999999875443334578999999999764
No 110
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=86.62 E-value=0.33 Score=25.88 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=29.4
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc---CCCCccCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI---NLTCPLCRN 86 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~---~~~CP~Cr~ 86 (91)
+...| ||......+ .++..-.|...||..|+..-... ...||.|+.
T Consensus 27 d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34557 887765443 33344578899999998643221 346999974
No 111
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=85.25 E-value=1 Score=22.57 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCCcccccccccccc-cCCcceeeeCCCCchhhHhhHHHHHh--cCCCCccCC
Q 045184 36 TSSSSSGCAICLETF-ADDETCRIFLVCNHIFHLNCIDGWLE--INLTCPLCR 85 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~C~~~w~~--~~~~CP~Cr 85 (91)
...++..|.||...- .....+...-.|.-.||..|+..-.. ..-.||.|+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 344567799998764 23334444467888999999974221 122477774
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=85.08 E-value=0.29 Score=21.10 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=13.2
Q ss_pred CcccccccccccccCCcc
Q 045184 38 SSSSGCAICLETFADDET 55 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~ 55 (91)
.+...||+|+..+..+..
T Consensus 3 ~EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSADE 20 (34)
T ss_dssp SEEEECTTTCCEESSHHH
T ss_pred CcccCCcHHHHHcCCHHH
Confidence 345789999998876643
No 113
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.62 E-value=0.61 Score=23.40 Aligned_cols=39 Identities=15% Similarity=0.338 Sum_probs=25.0
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
.....|..|...+... .+..-+..||..|+ .|-.|+.+|
T Consensus 13 ~~~~~C~~C~~~I~~~----~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV----FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCCCSSSCCCCCSS----CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCCCccccCCCCccCc----EEEECcceeCcCcC--------eeCCCCCCC
Confidence 3446799999887653 22345678887775 466665543
No 114
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=83.83 E-value=1.2 Score=23.23 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=31.2
Q ss_pred CCccccccccccccc-CCcceeeeCCCCchhhHhhHHHHHh--cCCCCccCCC
Q 045184 37 SSSSSGCAICLETFA-DDETCRIFLVCNHIFHLNCIDGWLE--INLTCPLCRN 86 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~C~~~w~~--~~~~CP~Cr~ 86 (91)
..++..|.||...-. ....+...-.|.-.||..|+..-.. ..-.||.|..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 345677999987542 2334434457888999999974321 1224888754
No 115
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=83.73 E-value=0.21 Score=32.98 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-------CCCCccCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-------NLTCPLCRNCI 88 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-------~~~CP~Cr~~i 88 (91)
...|.+|...|..-.+--....||++||..|....... ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45699999988654332234679999999999765421 34577775443
No 116
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=83.43 E-value=0.17 Score=25.26 Aligned_cols=47 Identities=23% Similarity=0.520 Sum_probs=29.5
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh---cCCCCccCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE---INLTCPLCRN 86 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~---~~~~CP~Cr~ 86 (91)
.+...| ||..... +...+..-.|...||..|+.--.. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 344568 9987654 333334456888999999863221 2446888864
No 117
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=83.23 E-value=0.66 Score=30.56 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=29.8
Q ss_pred ccccccccccccCCcceeeeCCCCch--hhHhhHHHHHhc--CCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHI--FHLNCIDGWLEI--NLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~--f~~~C~~~w~~~--~~~CP~Cr~~i~ 89 (91)
...||+=...+..|.+ ...|.|. |-..-+-..... .-.||+|...+.
T Consensus 215 SL~CPlS~~ri~~P~R---g~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCR---AVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEE---ETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCc---CCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4569998888887743 2679997 433333333222 346999987653
No 118
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=82.73 E-value=0.49 Score=25.47 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=10.5
Q ss_pred hhhHhhHHHHHh
Q 045184 65 IFHLNCIDGWLE 76 (91)
Q Consensus 65 ~f~~~C~~~w~~ 76 (91)
.||+.|+..|..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 119
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=82.72 E-value=0.49 Score=25.43 Aligned_cols=12 Identities=42% Similarity=0.905 Sum_probs=10.6
Q ss_pred hhhHhhHHHHHh
Q 045184 65 IFHLNCIDGWLE 76 (91)
Q Consensus 65 ~f~~~C~~~w~~ 76 (91)
.||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 120
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.71 E-value=1.4 Score=22.09 Aligned_cols=38 Identities=16% Similarity=0.438 Sum_probs=23.6
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...|+.|...+... . +..-+..||..|+ .|..|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~-~---v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 2cor_A 15 KYICQKCHAIIDEQ-P---LIFKNDPYHPDHF--------NCANCGKELT 52 (79)
T ss_dssp CCBCTTTCCBCCSC-C---CCCSSSCCCTTTS--------BCSSSCCBCC
T ss_pred CCCCccCCCEecce-E---EEECcceeCCCCC--------EeCCCCCccC
Confidence 45688888877632 2 2345667777664 4777766654
No 121
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=82.36 E-value=0.54 Score=31.08 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=29.1
Q ss_pred ccccccccccccCCcceeeeCCCCchhhH--hhHHHHHhc--CCCCccCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHL--NCIDGWLEI--NLTCPLCRNCI 88 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~--~C~~~w~~~--~~~CP~Cr~~i 88 (91)
...||+=...+..|.+ -..|.|.-|. .-+...... .-.||+|...+
T Consensus 249 SL~CPlS~~ri~~PvR---g~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSK---SINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp ESBCTTTSSBCSSEEE---ETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred eecCCCccccccccCc---CCcCCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 3569998888887743 2679997433 323222222 34699998765
No 122
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=82.33 E-value=0.26 Score=20.32 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=7.4
Q ss_pred CCCccCCCCCCC
Q 045184 79 LTCPLCRNCILD 90 (91)
Q Consensus 79 ~~CP~Cr~~i~~ 90 (91)
..||+|+..+++
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 357777766553
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.48 E-value=0.43 Score=25.82 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=25.2
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHH
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWL 75 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~ 75 (91)
.++..|.||.+.-.. ..+..-..|...||..|+....
T Consensus 5 ~~~~~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCCCCC-cCCeECCCCCCCcChHHhCCcc
Confidence 356679999876322 2223346799999999998654
No 124
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=81.37 E-value=0.32 Score=28.99 Aligned_cols=44 Identities=25% Similarity=0.572 Sum_probs=27.9
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRNC 87 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~~ 87 (91)
+..|.+|.+. + .+.....|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3468999754 2 23233567789999999753322 2259999753
No 125
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.18 E-value=1.7 Score=21.96 Aligned_cols=40 Identities=30% Similarity=0.620 Sum_probs=25.4
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
.....|..|...+...+.+ ..-+..||..|+ .|-.|..+|
T Consensus 13 ~~~~~C~~C~~~I~~~e~v---~a~~~~wH~~CF--------~C~~C~~~L 52 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERL---CVNGHFFHRSCF--------RCHTCEATL 52 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBC---CBTTBCCBTTTC--------BCSSSCCBC
T ss_pred CCCCCCcccCCCcccceEE---EECCCeeCCCcC--------EEcCCCCCc
Confidence 3446799999987655443 234667887775 366665554
No 126
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=81.09 E-value=1.6 Score=22.36 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=26.1
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
....|..|...+... .+..-+..||..|+ .|-.|...|.
T Consensus 24 ~~~~C~~C~~~I~~~----~~~a~~~~~H~~CF--------~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA----VVKARDKYRHPECF--------VCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSC----CEESSSCEECTTTC--------CCSSSCCCTT
T ss_pred cCCCcccCCCEeccc----EEEECCceECccCC--------EecCCCCCCC
Confidence 345699999887752 22345678888775 4777776654
No 127
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.05 E-value=0.35 Score=24.22 Aligned_cols=44 Identities=32% Similarity=0.689 Sum_probs=26.1
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-----CCCCccCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-----NLTCPLCRN 86 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-----~~~CP~Cr~ 86 (91)
.|.||...- .+..+...-.|...||..|+.+=+.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 355666542 22333333568899999999843322 225888864
No 128
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=80.96 E-value=0.94 Score=26.33 Aligned_cols=48 Identities=19% Similarity=0.397 Sum_probs=31.6
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHH-----hcCCCCccCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWL-----EINLTCPLCRN 86 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~-----~~~~~CP~Cr~ 86 (91)
.+...| +|..........+..-.|...||..|+.--. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 445678 9988865444444446788999999985211 12456999964
No 129
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.50 E-value=0.72 Score=22.44 Aligned_cols=11 Identities=45% Similarity=0.797 Sum_probs=6.1
Q ss_pred ccccccccccc
Q 045184 41 SGCAICLETFA 51 (91)
Q Consensus 41 ~~C~IC~~~~~ 51 (91)
..|..|...+.
T Consensus 6 ~~C~~C~~~I~ 16 (70)
T 2d8x_A 6 SGCHQCGEFII 16 (70)
T ss_dssp SBCSSSCCBCC
T ss_pred CcCccCCCEec
Confidence 34666665554
No 130
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=80.03 E-value=4.2 Score=23.22 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=30.6
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHh-----------cCCCCccCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-----------INLTCPLCRNC 87 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-----------~~~~CP~Cr~~ 87 (91)
..+..|.+|.+- ..+...-.|-..||..|+.+-+. ..=.||+|+..
T Consensus 61 g~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345669888753 23334457888999999996552 12359999743
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=79.85 E-value=1.2 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=21.9
Q ss_pred cccccccccc------CCcceeeeCCCCchhhHhhHHH
Q 045184 42 GCAICLETFA------DDETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 42 ~C~IC~~~~~------~~~~~~~~~~C~H~f~~~C~~~ 73 (91)
.|.+|...-. .+..++....|+..||..|+..
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 5888987542 1234444467999999999864
No 132
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.71 E-value=0.33 Score=24.80 Aligned_cols=44 Identities=23% Similarity=0.619 Sum_probs=27.4
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-----CCCCccCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-----NLTCPLCRN 86 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-----~~~CP~Cr~ 86 (91)
.|.||...- .+..+...-.|...||..|+.+-+.. .=.||.|..
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 577887642 23333344578899999999853322 225888854
No 133
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.73 E-value=1.6 Score=21.10 Aligned_cols=10 Identities=30% Similarity=0.953 Sum_probs=5.2
Q ss_pred cccccccccc
Q 045184 42 GCAICLETFA 51 (91)
Q Consensus 42 ~C~IC~~~~~ 51 (91)
.|..|...+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8z_A 7 GCVQCKKPIT 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred CCcccCCeec
Confidence 3555555544
No 134
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=78.52 E-value=1.1 Score=21.44 Aligned_cols=37 Identities=16% Similarity=0.480 Sum_probs=21.2
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|+.|...+. +. .+..-+..||..|+ .|..|+.+|.
T Consensus 6 ~~C~~C~~~I~-~~---~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIE-GR---VVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECC-SC---EECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCcccCCEec-ce---EEEECccccccCcC--------EECCCCCCCC
Confidence 45777777766 22 22345566776664 4666655543
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.29 E-value=2.1 Score=20.73 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=13.5
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhH
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~ 71 (91)
.|..|...+...+. ++..-+..||..|+
T Consensus 7 ~C~~C~~~I~~~~~--~~~a~~~~~H~~CF 34 (72)
T 1wyh_A 7 GCSACGETVMPGSR--KLEYGGQTWHEHCF 34 (72)
T ss_dssp BCSSSCCBCCSSSC--EECSTTCCEETTTC
T ss_pred CCccCCCccccCcc--EEEECccccCcccC
Confidence 46666666554322 11234455565553
No 136
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=78.05 E-value=1.2 Score=21.83 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=29.1
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
.++..|.||.+. ..+...-.|...||..|+.+-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456679999863 233344568889999999753322 224888854
No 137
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.81 E-value=2.1 Score=21.08 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=23.4
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...|+.|...+...+.+. .-+..||..|+ .|..|+.+|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCCC--------CCCCCCCccC
Confidence 346888888776554332 34567776664 4666665553
No 138
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=77.69 E-value=0.76 Score=22.78 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=24.0
Q ss_pred cccccccccccCCcceeeeCCCCchhhH-hhHHHHHhcCCCCccCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHL-NCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~-~C~~~w~~~~~~CP~Cr~~i 88 (91)
..|..|...+....-. ..=+..||. .|.... ....|..|...+
T Consensus 28 F~C~~C~~~L~~~~~~---~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHA---EHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTTEE---EETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCccccCccCCCCceE---CcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 4677887777654211 123456776 476543 344577665443
No 139
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.57 E-value=1.2 Score=21.98 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=4.2
Q ss_pred ccccccccc
Q 045184 43 CAICLETFA 51 (91)
Q Consensus 43 C~IC~~~~~ 51 (91)
|+-|...+.
T Consensus 8 C~~C~~~I~ 16 (73)
T 1wig_A 8 CDSCEKYIT 16 (73)
T ss_dssp CSSSCCCCS
T ss_pred cccCCCEec
Confidence 444544443
No 140
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.46 E-value=1.5 Score=21.75 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=30.5
Q ss_pred CcccccccccccccCCcceeeeCCCCchhhHhhHHHHH----hcCCCCccCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWL----EINLTCPLCRN 86 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~----~~~~~CP~Cr~ 86 (91)
.....| ||......+...+..-.|..-||..|+.--. .....||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 344568 7988765444444445788899999986321 12456988864
No 141
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=76.40 E-value=2.1 Score=21.33 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=27.5
Q ss_pred CcccccccccccccCCcceeeeCC--CC-chhhHhhHHHHHh--cCCCCccCCCCC
Q 045184 38 SSSSGCAICLETFADDETCRIFLV--CN-HIFHLNCIDGWLE--INLTCPLCRNCI 88 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~C~~~w~~--~~~~CP~Cr~~i 88 (91)
.+...| ||..... + .++..-. |. ..||..|+.--.. ..-.||.|+...
T Consensus 14 ~~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCccc
Confidence 344557 8987643 3 2222234 55 5899999972111 134699997643
No 142
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.35 E-value=1.7 Score=21.12 Aligned_cols=38 Identities=24% Similarity=0.602 Sum_probs=19.8
Q ss_pred cccccccccccC--CcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 41 SGCAICLETFAD--DETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 41 ~~C~IC~~~~~~--~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
..|..|...+.. ...+ +..-+..||..|+ .|..|..+|
T Consensus 6 ~~C~~C~~~I~~~~~~~~--~~a~~~~wH~~CF--------~C~~C~~~L 45 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY--ISFEERQWHNDCF--------NCKKCSLSL 45 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC--EECSSCEECTTTC--------BCSSSCCBC
T ss_pred CCCcCCCccccCCCCcce--EEECCcccCcccC--------EeccCCCcC
Confidence 457777776654 2221 1234566666664 355555544
No 143
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.88 E-value=1.4 Score=22.63 Aligned_cols=39 Identities=18% Similarity=0.470 Sum_probs=24.5
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
....|+.|...+.. +. +..-+..||..|+ .|..|+.+|.
T Consensus 24 ~~~~C~~C~~~I~~-~~---v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-PF---LVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCCBBSSSCCBCCS-CE---EEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCccCCCEecc-eE---EEECCccccccCC--------ccCCCCCCCC
Confidence 34569999888742 22 2335677887775 4767766554
No 144
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.56 E-value=5.5 Score=22.36 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=29.0
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHH------h-----cCCCCccCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWL------E-----INLTCPLCRNC 87 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~------~-----~~~~CP~Cr~~ 87 (91)
.+..|.+|.+- ..+...-.|-..||..|+.+-+ . ..=.|++|+..
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34559999753 2332335688999999999752 1 12369999643
No 145
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.34 E-value=2 Score=20.83 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=5.2
Q ss_pred chhhHhhHHHHH
Q 045184 64 HIFHLNCIDGWL 75 (91)
Q Consensus 64 H~f~~~C~~~w~ 75 (91)
..||..|....+
T Consensus 54 ~~yC~~cy~~~~ 65 (72)
T 1x61_A 54 RAYCEGCYVATL 65 (72)
T ss_dssp CEEEHHHHHHHH
T ss_pred eEECHHHHHHHH
Confidence 344444444433
No 146
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.23 E-value=1.5 Score=20.97 Aligned_cols=44 Identities=25% Similarity=0.721 Sum_probs=28.3
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
++..|.+|... ..+...-.|...||..|+.+-+.. .-.||.|..
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 45679999863 233344578889999999753322 224887754
No 147
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.19 E-value=1.2 Score=21.61 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=13.8
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhH
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~ 71 (91)
.|+.|...+...+.+. ..-+..||..|+
T Consensus 7 ~C~~C~~~I~~~~~~~--~a~~~~~H~~CF 34 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKM--EYKGSSWHETCF 34 (72)
T ss_dssp CBSSSCCCCCSSSCEE--EETTEEEETTTT
T ss_pred CCccCCCcccCCceEE--EECcCeecccCC
Confidence 4666666665433221 123455665554
No 148
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.05 E-value=1.3 Score=21.88 Aligned_cols=40 Identities=25% Similarity=0.551 Sum_probs=23.4
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
....|+.|...+...+.+. ..-+..||..|+ .|-.|..+|
T Consensus 10 ~~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L 49 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIV--NSNGELYHEQCF--------VCAQCFQQF 49 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCE--EETTEEECTTTC--------CCTTTCCCC
T ss_pred CCCCchhcCCccCCCceEE--EeCccEeccccC--------eECCCCCCC
Confidence 3456888888876444322 224566776664 366665554
No 149
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.93 E-value=0.46 Score=23.05 Aligned_cols=38 Identities=24% Similarity=0.570 Sum_probs=26.7
Q ss_pred ccccccccccccCCcceeee--CC--CCchhhHhhHHHHHhc
Q 045184 40 SSGCAICLETFADDETCRIF--LV--CNHIFHLNCIDGWLEI 77 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~--~~--C~H~f~~~C~~~w~~~ 77 (91)
...||-|...++..+....+ .. |++.||..|...|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 34689898888766543322 23 8899999999888643
No 150
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.67 E-value=2.6 Score=21.16 Aligned_cols=39 Identities=23% Similarity=0.596 Sum_probs=25.3
Q ss_pred cccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
....|+.|...+...+.+. .-+..||..|+ .|..|+.+|
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~wH~~CF--------~C~~C~~~L 52 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL---ALDKQWHVSCF--------KCQTCSVIL 52 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE---ETTEEECTTTC--------BCSSSCCBC
T ss_pred CCCCCcCcCCeeCCCeEEE---ECCcccccccC--------CcCcCCCCc
Confidence 3456999998876554432 24567777775 477776655
No 151
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.62 E-value=1.6 Score=21.85 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=12.4
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhH
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~ 71 (91)
.|+.|...+... .+..-+..||..|+
T Consensus 17 ~C~~C~~~I~~~----~~~a~~~~~H~~CF 42 (81)
T 1x6a_A 17 FCHGCSLLMTGP----FMVAGEFKYHPECF 42 (81)
T ss_dssp BCTTTCCBCCSC----CBCCTTCCBCTTSC
T ss_pred cCccCCCCcCce----EEEECCceeccccC
Confidence 466666655521 11233455555553
No 152
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=74.40 E-value=0.62 Score=28.74 Aligned_cols=44 Identities=32% Similarity=0.689 Sum_probs=24.5
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHhc-----CCCCccCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI-----NLTCPLCRN 86 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~-----~~~CP~Cr~ 86 (91)
.|.+|...- .+..+...-.|...||..|+.+=+.. .=.||.|..
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477776542 22333344578899999999853322 225999964
No 153
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.13 E-value=1.4 Score=21.32 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=4.9
Q ss_pred cccccccccc
Q 045184 42 GCAICLETFA 51 (91)
Q Consensus 42 ~C~IC~~~~~ 51 (91)
.|+.|...+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 3555555443
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.82 E-value=1.9 Score=21.50 Aligned_cols=39 Identities=21% Similarity=0.561 Sum_probs=23.8
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|+.|...+...+.+. ..-+..||..|+ .|-.|+.+|.
T Consensus 16 ~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV--EYKGTVWHKDCF--------TCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEE--ECSSCEEETTTC--------CCSSSCCCCT
T ss_pred CcCccCCcccccCceEE--EECccccccccC--------chhhCCCccC
Confidence 46888888776544322 234667777665 4666666554
No 155
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=73.69 E-value=0.52 Score=24.08 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=25.9
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----C-CCCccCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----N-LTCPLCRN 86 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~-~~CP~Cr~ 86 (91)
.|.+|...- .+..+...-.|...||..|+.+-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 355665542 22333333568889999999854432 1 35888864
No 156
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.17 E-value=5.2 Score=19.91 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=29.1
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHH---------HhcCCCCccCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGW---------LEINLTCPLCRN 86 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w---------~~~~~~CP~Cr~ 86 (91)
...| ||...... ...+..-.|...||..|+.-- ......||.|+.
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 3457 89887653 233333568899999998421 124667999964
No 157
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.09 E-value=1.7 Score=22.86 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCcccccccccccccCCcceeeeCCCCchhhHhhHHHHHhc----CCCCccCCC
Q 045184 36 TSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
...++..|.||...-. ...+...-.|...||..|+.+=+.. .-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3344567999987643 2333344578889999999743322 224888853
No 158
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.14 E-value=3.7 Score=21.60 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=26.4
Q ss_pred cccccccccccccCCcceeeeCC--CC-chhhHhhHHHHH--hcCCCCccCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLV--CN-HIFHLNCIDGWL--EINLTCPLCRNC 87 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~C~~~w~--~~~~~CP~Cr~~ 87 (91)
+...| ||..... + .++..-. |. ..||..|+.--. ...-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 34457 9988653 3 2222234 54 579999996211 113469999764
No 159
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.49 E-value=1.3 Score=22.14 Aligned_cols=35 Identities=23% Similarity=0.602 Sum_probs=21.0
Q ss_pred ccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
.|+.|...+.. ..+ ..-+..||..|+ .|-.|..+|
T Consensus 17 ~C~~C~~~I~~-~~v---~a~~~~wH~~CF--------~C~~C~~~L 51 (81)
T 1v6g_A 17 RCFSCDQFIEG-EVV---SALGKTYHPDCF--------VCAVCRLPF 51 (81)
T ss_dssp BCTTTCCBCCS-CCE---EETTEEECTTTS--------SCSSSCCCC
T ss_pred cCccccCEecc-ceE---EECCceeCccCC--------ccccCCCCC
Confidence 58888887763 221 234667777765 366665554
No 160
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=70.44 E-value=0.24 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=16.1
Q ss_pred CCCchhhHhhHHHHHhcCCCCc
Q 045184 61 VCNHIFHLNCIDGWLEINLTCP 82 (91)
Q Consensus 61 ~C~H~f~~~C~~~w~~~~~~CP 82 (91)
.|++.||..|...|.. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 6999999999998854 5563
No 161
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=70.23 E-value=0.82 Score=24.84 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=16.1
Q ss_pred CCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 60 LVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 60 ~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..||+.|. .-+.....||.|++.-+
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 56999981 11123567999987644
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.46 E-value=1.8 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.576 Sum_probs=15.2
Q ss_pred cccccccccccC--CcceeeeCCCCchhhHhhH
Q 045184 41 SGCAICLETFAD--DETCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 41 ~~C~IC~~~~~~--~~~~~~~~~C~H~f~~~C~ 71 (91)
..|+.|...+.. .... +..-+..||..|+
T Consensus 6 ~~C~~C~~~I~~~g~~~~--~~a~~~~wH~~CF 36 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF--ICFQDSQWHSECF 36 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE--EEETTEEEEGGGC
T ss_pred CCCccCCCcccCCCCcee--EEECCcccCcccC
Confidence 347777776654 2222 1234556666664
No 163
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=67.73 E-value=2 Score=17.69 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=18.8
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhH
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~ 71 (91)
..|+.|....-..+.+ ..-|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~---~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKV---NCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCC---CSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeE---EECCeEecccCC
Confidence 3588998877655443 345678888773
No 164
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.99 E-value=1.7 Score=21.78 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=13.3
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhH
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~ 71 (91)
..|+.|...+... . +..-+..||..|+
T Consensus 16 ~~C~~C~~~I~~~-~---~~a~~~~~H~~CF 42 (81)
T 2dlo_A 16 EKCATCSQPILDR-I---LRAMGKAYHPGCF 42 (81)
T ss_dssp CBCTTTCCBCCSC-C---EEETTEEECTTTC
T ss_pred CccccCCCeecce-e---EEECCccccHHhc
Confidence 3466666665522 1 1223455665553
No 165
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.73 E-value=2.6 Score=20.88 Aligned_cols=36 Identities=22% Similarity=0.610 Sum_probs=18.5
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
..|+.|...+... . +..-+..||..|+ .|-.|..+|
T Consensus 16 ~~C~~C~~~I~~~-~---v~a~~~~~H~~CF--------~C~~C~~~L 51 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G---VTYRDQPWHRECL--------VCTGCQTPL 51 (80)
T ss_dssp CCCTTTCCCCCSC-C---EESSSSEECTTTC--------BCSSSCCBC
T ss_pred CcCCCCCCEecCc-E---EEECCchhhhhhC--------CcccCCCcC
Confidence 3466666665432 1 1234556666554 355555544
No 166
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.36 E-value=1.7 Score=21.56 Aligned_cols=37 Identities=16% Similarity=0.476 Sum_probs=19.0
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|+.|...+... .+ ..-+..||..|+ .|..|+.+|.
T Consensus 16 ~~C~~C~~~I~~~-~v---~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLEN-YL---SAMDTVWHPECF--------VCGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCSS-CE---EETTEEECTTTC--------BCSSSCCBSC
T ss_pred CccccCCCeecce-eE---EECCCeEecCcC--------ChhhCCCCCC
Confidence 3577776666542 11 223455665554 3555555543
No 167
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=64.75 E-value=6.4 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=13.9
Q ss_pred CCCchhhHhhHHHHHh
Q 045184 61 VCNHIFHLNCIDGWLE 76 (91)
Q Consensus 61 ~C~H~f~~~C~~~w~~ 76 (91)
.|...||..||..++.
T Consensus 98 ~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 98 NCCRCFCVECVDLLVG 113 (159)
T ss_dssp TTCCEEEHHHHHHHTC
T ss_pred CCCCchhHHHHHHhcC
Confidence 5889999999998874
No 168
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.59 E-value=4 Score=20.31 Aligned_cols=39 Identities=23% Similarity=0.597 Sum_probs=22.3
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|..|...+..... ++..=+..||..|+ .|..|..+|.
T Consensus 16 ~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 16 NTCAECQQLIGHDSR--ELFYEDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CBCTTTCCBCCSSCC--BCCCSSCCCBTTTS--------BCTTTCCBCS
T ss_pred CcCccCCCccccCcE--EEEeCCccccccCC--------eecCCCCccC
Confidence 358888887763222 21234567777665 3666655543
No 169
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=64.18 E-value=2.2 Score=20.54 Aligned_cols=40 Identities=25% Similarity=0.522 Sum_probs=24.9
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
...|..|...+...+.+. ..-+..||..|+ .|-.|..+|.
T Consensus 11 ~~~C~~C~~~i~~~e~~~--~~~~~~~H~~CF--------~C~~C~~~L~ 50 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIV--NSNGELYHEQCF--------VCAQCFQQFP 50 (72)
T ss_dssp TCBCTTTCCBCCTTCEEE--EETTEEEETTTS--------SCTTTCCCCG
T ss_pred CccchhcCccccCCceEE--EeCcCeeCcCCC--------cccCCCCCCC
Confidence 446888988877655432 234566777775 4666666553
No 170
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.31 E-value=2.7 Score=21.80 Aligned_cols=47 Identities=15% Similarity=0.477 Sum_probs=30.2
Q ss_pred ccccccccccccCC-cceeeeCCCCchhhHhhHHHHHh--------cCCCCccCCC
Q 045184 40 SSGCAICLETFADD-ETCRIFLVCNHIFHLNCIDGWLE--------INLTCPLCRN 86 (91)
Q Consensus 40 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~C~~~w~~--------~~~~CP~Cr~ 86 (91)
+..|.||...-..+ ..+...-.|...||..|+.+-+. ..-.|+.|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 45699998764332 34444457889999999975432 1235887753
No 171
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.89 E-value=5.6 Score=20.27 Aligned_cols=29 Identities=28% Similarity=0.621 Sum_probs=15.9
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~ 71 (91)
...|..|...+...+.+ ..-+..||..|+
T Consensus 15 ~~~C~~C~~~I~~~~~v---~a~~~~~H~~CF 43 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL---LANQQVFHISCF 43 (91)
T ss_dssp SCBCTTTCCBCCTTSEE---ECSSSEEETTTC
T ss_pred CCcCccCCCccCCceeE---EECCCEECCCCC
Confidence 34577777776544332 234556666554
No 172
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=62.89 E-value=1.1 Score=17.95 Aligned_cols=9 Identities=33% Similarity=1.338 Sum_probs=4.9
Q ss_pred CCccCCCCC
Q 045184 80 TCPLCRNCI 88 (91)
Q Consensus 80 ~CP~Cr~~i 88 (91)
.||+|...+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 466665444
No 173
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=61.80 E-value=0.9 Score=21.14 Aligned_cols=41 Identities=24% Similarity=0.526 Sum_probs=24.4
Q ss_pred cccccccCCcceeeeCCCCchhhHhhHHHHH---hcCCCCccCCC
Q 045184 45 ICLETFADDETCRIFLVCNHIFHLNCIDGWL---EINLTCPLCRN 86 (91)
Q Consensus 45 IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~---~~~~~CP~Cr~ 86 (91)
||..+.. +...+..-.|..-||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5666543 32333335688899999985322 12456888864
No 174
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=61.17 E-value=2 Score=21.44 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=5.5
Q ss_pred ccccccccccC
Q 045184 42 GCAICLETFAD 52 (91)
Q Consensus 42 ~C~IC~~~~~~ 52 (91)
.|..|...+..
T Consensus 9 ~C~~C~~~I~~ 19 (81)
T 1a7i_A 9 KCGACGRTVYH 19 (81)
T ss_dssp BCSSSCCBCSS
T ss_pred cCcCcCccccC
Confidence 35555555443
No 175
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=60.32 E-value=3 Score=22.33 Aligned_cols=39 Identities=21% Similarity=0.529 Sum_probs=21.2
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
..||+|...+...........|.-.| .....||-|..+|
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f---------~~~a~CPdC~q~L 71 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPL 71 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBC
T ss_pred ccCccCCCcceecCCEEECccccchh---------hccccCcchhhHH
Confidence 67999988875432222223333222 2344588887665
No 176
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.05 E-value=0.69 Score=29.78 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=29.9
Q ss_pred CcccccccccccccCCcceee-eCCCC--chhhHhhHHHHHhcCCCCccCCC
Q 045184 38 SSSSGCAICLETFADDETCRI-FLVCN--HIFHLNCIDGWLEINLTCPLCRN 86 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~-~~~C~--H~f~~~C~~~w~~~~~~CP~Cr~ 86 (91)
+....||+|-....... +.. -..=| +.+|.-|-..|......||.|..
T Consensus 180 ~~~~~CPvCGs~P~~s~-l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGM-IRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEEE-EEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCceeE-EeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 56678999988653320 000 00122 45666777888777888999965
No 177
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=60.02 E-value=3.9 Score=22.25 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=14.6
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHH
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWL 75 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~ 75 (91)
..|..|...+..+.... ..=+..||..|....+
T Consensus 37 F~C~~C~~~L~~g~~f~--~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYL--LINSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEE--ECSSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEE--eeCCEEEcHHHhHHHh
Confidence 34555555553332221 1234455555555443
No 178
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=59.93 E-value=7.2 Score=21.31 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=25.5
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|+.|...+.....+ ..-+..||..|+ .|-.|+.+|.
T Consensus 62 ~~C~~C~~~I~~~~~v---~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLL---YAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEE---EETTEEEETTTS--------BCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEE---EeCCcEEccccc--------CcCcCCCccc
Confidence 4699999887754322 235677888775 4777776663
No 179
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.61 E-value=5.8 Score=20.19 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCcccccccccccccCCc-ceeeeCCCCchhhHhhH
Q 045184 37 SSSSSGCAICLETFADDE-TCRIFLVCNHIFHLNCI 71 (91)
Q Consensus 37 ~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~C~ 71 (91)
......|..|.+.|.--. .-.....|.|..|.+|-
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhccccc
Confidence 455678999999986421 11234678898888874
No 180
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=59.48 E-value=2.7 Score=20.63 Aligned_cols=39 Identities=18% Similarity=0.419 Sum_probs=24.2
Q ss_pred cccccccccccC---CcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFAD---DETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|+.|...+.. ..... ..=+..||..|+ .|..|..+|.
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV--AYEGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE--EETTEEEETTTC--------BCSSSCCBCT
T ss_pred ccCcccCCcccCCCCCceeE--EECcceeCcccC--------EehhcCCCCC
Confidence 458888888774 22221 234667887775 4777766654
No 181
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=57.45 E-value=10 Score=18.82 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=28.2
Q ss_pred cccccccccCCcceeeeCCCCchhhHhhHHHHHh-----cCCCCccCCC
Q 045184 43 CAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-----INLTCPLCRN 86 (91)
Q Consensus 43 C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-----~~~~CP~Cr~ 86 (91)
--||...+......+..-.|.--||..|+.--.. ....||.|+.
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3488877654444444456888999999953221 2456998864
No 182
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=55.48 E-value=6.6 Score=20.25 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=24.1
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|..|...+....-. ..=+..||..|... .....|..|..+|.
T Consensus 34 F~C~~C~~~L~~~~~~---~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFV---AKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCE---EETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeE---CcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 3466776666432111 12345666666532 23456888887775
No 183
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=54.64 E-value=10 Score=25.24 Aligned_cols=15 Identities=20% Similarity=0.802 Sum_probs=13.7
Q ss_pred CCCchhhHhhHHHHH
Q 045184 61 VCNHIFHLNCIDGWL 75 (91)
Q Consensus 61 ~C~H~f~~~C~~~w~ 75 (91)
.|...||..||...+
T Consensus 112 ~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 112 DCTRCYCFECVDSLV 126 (386)
T ss_dssp TCCCEECHHHHHHHT
T ss_pred CCCcchHHHHHHHhc
Confidence 788999999999887
No 184
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.14 E-value=17 Score=18.15 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=29.0
Q ss_pred cccccccccccccCCcceeeeC--CCCchhhHhhHHHHHh---------cCCCCccCCCC
Q 045184 39 SSSGCAICLETFADDETCRIFL--VCNHIFHLNCIDGWLE---------INLTCPLCRNC 87 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~C~~~w~~---------~~~~CP~Cr~~ 87 (91)
....| ||......+ ..+..- .|...||..|+.--.. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34557 788874333 222334 6888999999853211 24569999654
No 185
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=53.11 E-value=12 Score=20.24 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=29.1
Q ss_pred cccccccccccC-CcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFAD-DETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|..|...+.. +... ...=+..||..|....+.....|..|..+|.
T Consensus 33 F~C~~C~~~L~~~~~~~--~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS--YTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECC--EEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeE--EEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 357777777752 1111 1234567788888776655457888887775
No 186
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=51.80 E-value=4.2 Score=19.34 Aligned_cols=37 Identities=22% Similarity=0.596 Sum_probs=20.3
Q ss_pred ccccccccccCCcceeeeCCCCchhh--HhhHHHHHhcCCCCccCCCCC
Q 045184 42 GCAICLETFADDETCRIFLVCNHIFH--LNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 42 ~C~IC~~~~~~~~~~~~~~~C~H~f~--~~C~~~w~~~~~~CP~Cr~~i 88 (91)
.|+.|...+...+... ..-+..|| ..|+ .|-.|+.+|
T Consensus 4 ~C~~C~~~I~~~~~~v--~a~~~~wH~~~~CF--------~C~~C~~~L 42 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRV--TYNNFSWHASTECF--------LCSCCSKCL 42 (65)
T ss_dssp ECTTTSSEECTTSCEE--EETTEEEETTTTTS--------BCTTTCCBC
T ss_pred CCcCCCCeeccCceEE--EECCCccCCCCCCE--------ECCCCCCcC
Confidence 4777777766432221 22466677 6664 455665554
No 187
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.23 E-value=6.2 Score=20.33 Aligned_cols=12 Identities=17% Similarity=0.675 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 045184 41 SGCAICLETFAD 52 (91)
Q Consensus 41 ~~C~IC~~~~~~ 52 (91)
..||.|...+..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 346666655543
No 188
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=49.81 E-value=6.5 Score=18.64 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=14.7
Q ss_pred ccccccccccccCCcceeeeC--CCCchh
Q 045184 40 SSGCAICLETFADDETCRIFL--VCNHIF 66 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~--~C~H~f 66 (91)
-..||+|...+.-.....+.. .|++.|
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 346888888765433222323 466554
No 189
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=49.60 E-value=11 Score=18.64 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=22.7
Q ss_pred cccccccccccccCCcceeeeCCC-CchhhHhhHHHHH
Q 045184 39 SSSGCAICLETFADDETCRIFLVC-NHIFHLNCIDGWL 75 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C-~H~f~~~C~~~w~ 75 (91)
+..-|.||.++-. ...+.| +-.||..|+....
T Consensus 7 e~pWC~ICneDAt-----lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT-----LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC-----EEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe-----EEecCCCCceehHHHHHHHc
Confidence 3445999988722 244788 6799999988764
No 190
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=49.29 E-value=10 Score=20.17 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=16.5
Q ss_pred cccccccccccC-CcceeeeCCCCchhhHhhHHHHHh
Q 045184 41 SGCAICLETFAD-DETCRIFLVCNHIFHLNCIDGWLE 76 (91)
Q Consensus 41 ~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~C~~~w~~ 76 (91)
..|..|...+.. +... ...=+..||..|....+.
T Consensus 31 F~C~~C~~~L~~~g~~~--~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRL--YYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCCSSSCSCCCCSSSCC--CCBTTBCCCHHHHHHHHT
T ss_pred CcccccCCchhcCCCee--EEECCeeechHHHHHHhC
Confidence 456666666643 1111 122345666666655443
No 191
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=47.07 E-value=14 Score=19.02 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=21.6
Q ss_pred CcccccccccccccCCcceee-eCCCCchhhHhhHHHH
Q 045184 38 SSSSGCAICLETFADDETCRI-FLVCNHIFHLNCIDGW 74 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~C~~~w 74 (91)
.....|.||...- .+.-+.- ...|.-.||..|...-
T Consensus 15 R~~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 15 RWKLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred HhcCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 3457799996531 1211100 1358889999998764
No 192
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=47.04 E-value=1.1 Score=23.12 Aligned_cols=32 Identities=28% Similarity=0.648 Sum_probs=20.0
Q ss_pred cccccccccCC-cce-eeeCCCCchhhHhhHHHH
Q 045184 43 CAICLETFADD-ETC-RIFLVCNHIFHLNCIDGW 74 (91)
Q Consensus 43 C~IC~~~~~~~-~~~-~~~~~C~H~f~~~C~~~w 74 (91)
||-|-..+... ... +....|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 77665544321 111 233459999999999888
No 193
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=47.01 E-value=1.1 Score=17.45 Aligned_cols=11 Identities=36% Similarity=0.945 Sum_probs=7.7
Q ss_pred hhhHhhHHHHH
Q 045184 65 IFHLNCIDGWL 75 (91)
Q Consensus 65 ~f~~~C~~~w~ 75 (91)
-||..|..+|+
T Consensus 6 ffcetcskpwl 16 (26)
T 1loi_A 6 FFCETCSKPWL 16 (26)
T ss_dssp HHHHTSSCTTG
T ss_pred HHHHhcCCchh
Confidence 46777777775
No 194
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=45.53 E-value=14 Score=19.97 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=20.9
Q ss_pred CCCcccccccccccccCCcceeeeC--CCCchhhHhhHH
Q 045184 36 TSSSSSGCAICLETFADDETCRIFL--VCNHIFHLNCID 72 (91)
Q Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~C~~ 72 (91)
....+..|.+|.+ .+ .+...- .|-..||..|+.
T Consensus 11 ~~~~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 11 KQMHEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CCSSCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT
T ss_pred cCCCCCCCCcCCC---CC-cEeEECCCCCCcccccccCc
Confidence 3345566999983 22 222223 477899999987
No 195
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=45.48 E-value=18 Score=17.48 Aligned_cols=38 Identities=24% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCCcccccccccc-cccCCcceeeeCCCCchhhHhhHHHH
Q 045184 36 TSSSSSGCAICLE-TFADDETCRIFLVCNHIFHLNCIDGW 74 (91)
Q Consensus 36 ~~~~~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~C~~~w 74 (91)
...+...|.||.. .|.++-.- ...-|.-.||..|-..|
T Consensus 5 ~~~d~~~C~iC~KTKFADG~Gh-~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 5 QKGDAPTCGICHKTKFADGCGH-NCSYCQTKFCARCGGRV 43 (62)
T ss_dssp CSSCCCCCSSSSCSCCCSSCCE-EBTTTCCEECTTSEEEE
T ss_pred ccCCcchhhhhccceeccCCCc-cccccCCeeecccCCEe
Confidence 3455678999987 44444222 11235556666665443
No 196
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=45.13 E-value=3.6 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=8.5
Q ss_pred HhcCCCCccCCCCC
Q 045184 75 LEINLTCPLCRNCI 88 (91)
Q Consensus 75 ~~~~~~CP~Cr~~i 88 (91)
+..-..||+|+.++
T Consensus 7 LLeiL~CP~ck~~L 20 (67)
T 2jny_A 7 LLEVLACPKDKGPL 20 (67)
T ss_dssp GTCCCBCTTTCCBC
T ss_pred HHHHhCCCCCCCcC
Confidence 33345688887765
No 197
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.28 E-value=5.5 Score=21.25 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=5.6
Q ss_pred ccccccccc
Q 045184 40 SSGCAICLE 48 (91)
Q Consensus 40 ~~~C~IC~~ 48 (91)
...||+|..
T Consensus 47 g~~CPvCgs 55 (112)
T 1l8d_A 47 KGKCPVCGR 55 (112)
T ss_dssp SEECTTTCC
T ss_pred CCCCCCCCC
Confidence 445777754
No 198
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=42.32 E-value=19 Score=24.67 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=29.2
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHh-----cCCCCccCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLE-----INLTCPLCRN 86 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~-----~~~~CP~Cr~ 86 (91)
..| +|...+......+..-.|.--||..|+.--.. ....||.|+.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 346 89887654444444567889999999853221 1356998863
No 199
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=41.75 E-value=20 Score=20.68 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=9.0
Q ss_pred ccccccccccccCC
Q 045184 40 SSGCAICLETFADD 53 (91)
Q Consensus 40 ~~~C~IC~~~~~~~ 53 (91)
...|..|...+...
T Consensus 60 ~~~C~~C~~~I~~~ 73 (182)
T 2jtn_A 60 IPMCAGCDQHILDR 73 (182)
T ss_dssp CCBCBTSSSBCCCS
T ss_pred CCcCccCCCCccCc
Confidence 35677777776543
No 200
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.45 E-value=9.4 Score=22.59 Aligned_cols=8 Identities=38% Similarity=1.065 Sum_probs=5.0
Q ss_pred CCccCCCC
Q 045184 80 TCPLCRNC 87 (91)
Q Consensus 80 ~CP~Cr~~ 87 (91)
.||+|..+
T Consensus 173 ~CP~C~~~ 180 (191)
T 1lko_A 173 LCPACAHP 180 (191)
T ss_dssp BCTTTCCB
T ss_pred CCCCCcCC
Confidence 57777553
No 201
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=41.13 E-value=9.7 Score=22.22 Aligned_cols=8 Identities=38% Similarity=1.335 Sum_probs=3.7
Q ss_pred CchhhHhh
Q 045184 63 NHIFHLNC 70 (91)
Q Consensus 63 ~H~f~~~C 70 (91)
++.||..|
T Consensus 90 ~~~~H~~C 97 (188)
T 1rut_X 90 GNVYHLKC 97 (188)
T ss_dssp TEEECGGG
T ss_pred CCEEeCCC
Confidence 34444444
No 202
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=40.32 E-value=18 Score=21.05 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=6.8
Q ss_pred cccccccccccCC
Q 045184 41 SGCAICLETFADD 53 (91)
Q Consensus 41 ~~C~IC~~~~~~~ 53 (91)
..|..|...+...
T Consensus 8 ~~C~~C~~~I~~~ 20 (192)
T 1b8t_A 8 KKCGVCQKAVYFA 20 (192)
T ss_dssp EECTTTCCEECSS
T ss_pred CcCccCCCeecce
Confidence 3466665555433
No 203
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=40.22 E-value=17 Score=20.74 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=27.4
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|..|...+.... . ..=|..||..|....+ ...|..|..+|.
T Consensus 34 F~C~~C~~~L~~~~-f---~~~g~~yC~~~y~~~f--~~~C~~C~~~I~ 76 (169)
T 2rgt_A 34 LKCSDCHVPLAERC-F---SRGESVYCKDDFFKRF--GTKCAACQLGIP 76 (169)
T ss_dssp SBCTTTCCBCCSCC-E---ESSSCEECHHHHHHHH--SCBCTTTCCBCC
T ss_pred CccCCCCCcCCCCC-c---ccCCeeeecccccccc--cccccccccccC
Confidence 45777877776542 1 2245677777776543 457888887765
No 204
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=38.19 E-value=19 Score=19.38 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=11.7
Q ss_pred CchhhHhhHHHHHhcCCCCccCCCCC
Q 045184 63 NHIFHLNCIDGWLEINLTCPLCRNCI 88 (91)
Q Consensus 63 ~H~f~~~C~~~w~~~~~~CP~Cr~~i 88 (91)
+..||..|....+.....|..|..+|
T Consensus 51 g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 51 GRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp TEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred CEEeecCchhhhCCCccChhhcCCcc
Confidence 34455555544332222455555444
No 205
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=36.52 E-value=36 Score=18.28 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=17.7
Q ss_pred ccccccccccccCCcceeeeCCCCchhhH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHL 68 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 68 (91)
...|..|... ....+.+.|||++|.
T Consensus 24 ~~~C~~C~~~----~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTI----QENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCC----SSEEEETTTCCEEEC
T ss_pred CCcCccccCC----CCeeeeeecCccccC
Confidence 4569999765 234567899999873
No 206
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=35.44 E-value=20 Score=17.73 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=5.7
Q ss_pred cccccccccc
Q 045184 42 GCAICLETFA 51 (91)
Q Consensus 42 ~C~IC~~~~~ 51 (91)
.||+|...+.
T Consensus 10 ~CP~ck~~L~ 19 (69)
T 2pk7_A 10 ACPICKGPLK 19 (69)
T ss_dssp CCTTTCCCCE
T ss_pred eCCCCCCcCe
Confidence 4666666554
No 207
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=35.44 E-value=31 Score=22.44 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=25.1
Q ss_pred CcccccccccccccC-CcceeeeCCCCchhhHhhHHH
Q 045184 38 SSSSGCAICLETFAD-DETCRIFLVCNHIFHLNCIDG 73 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~C~~~ 73 (91)
.....|..|...+.. ...-.....||.++|..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 345679999998852 222223467999999999864
No 208
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=33.65 E-value=38 Score=16.38 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=26.7
Q ss_pred cccccccccccccCCcceeeeCCCCchhhH-hhHHHHH
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHL-NCIDGWL 75 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~-~C~~~w~ 75 (91)
-...|.-|...+..++.....--..|.||. .||..+.
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 356799999999988765444456688875 7887653
No 209
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=32.85 E-value=19 Score=19.47 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=15.5
Q ss_pred eCCCCchhhHhhHHHHHhcCC-CCccCCCCC
Q 045184 59 FLVCNHIFHLNCIDGWLEINL-TCPLCRNCI 88 (91)
Q Consensus 59 ~~~C~H~f~~~C~~~w~~~~~-~CP~Cr~~i 88 (91)
...|||.|-.. .... .||.|.++.
T Consensus 76 C~~CG~~~e~~------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 76 CKDCSHVFKPN------ALDYGVCEKCHSKN 100 (119)
T ss_dssp CSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred cCCCCCEEeCC------CCCCCcCccccCCC
Confidence 35788877541 2345 799997763
No 210
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=32.12 E-value=15 Score=19.13 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=24.8
Q ss_pred CcccccccccccccCCcceeeeCCCC---chhhHhhHHHHH--hcCCCCcc-CC
Q 045184 38 SSSSGCAICLETFADDETCRIFLVCN---HIFHLNCIDGWL--EINLTCPL-CR 85 (91)
Q Consensus 38 ~~~~~C~IC~~~~~~~~~~~~~~~C~---H~f~~~C~~~w~--~~~~~CP~-Cr 85 (91)
.+...| ||..... +. ++..-.|. ..||..|+.--. ...-.||. |+
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCCCCcCCCCCccCChhhc
Confidence 334557 8987533 32 32334444 579999985211 11345888 75
No 211
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=31.85 E-value=21 Score=16.87 Aligned_cols=43 Identities=23% Similarity=0.577 Sum_probs=25.0
Q ss_pred cccccccccccccCCcceeeeCC--CC-chhhHhhHHHHHhc----CCCCccCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLV--CN-HIFHLNCIDGWLEI----NLTCPLCRN 86 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~C~~~w~~~----~~~CP~Cr~ 86 (91)
+...| ||..... + ..+..-. |. ..||..|+. +.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 8987642 3 2222234 55 579999997 222 335888854
No 212
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=31.70 E-value=84 Score=18.69 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=5.9
Q ss_pred CCCccCCCC
Q 045184 79 LTCPLCRNC 87 (91)
Q Consensus 79 ~~CP~Cr~~ 87 (91)
..||+|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 368888653
No 213
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=31.18 E-value=22 Score=16.78 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=25.9
Q ss_pred cccccccccccccCCcceeeeCC--CC-chhhHhhHHHHHh--cCCCCccCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLV--CN-HIFHLNCIDGWLE--INLTCPLCRN 86 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~C~~~w~~--~~~~CP~Cr~ 86 (91)
+..-| ||..... + ..+..-. |. ..||..|+.--.. ..-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccC
Confidence 34557 8987642 3 2323345 66 5899999972111 1335888854
No 214
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.99 E-value=84 Score=18.16 Aligned_cols=7 Identities=43% Similarity=1.388 Sum_probs=4.7
Q ss_pred CCccCCC
Q 045184 80 TCPLCRN 86 (91)
Q Consensus 80 ~CP~Cr~ 86 (91)
.||+|..
T Consensus 155 ~CP~Cg~ 161 (170)
T 3pwf_A 155 YCPVCGA 161 (170)
T ss_dssp BCTTTCC
T ss_pred CCCCCCC
Confidence 5777754
No 215
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.95 E-value=62 Score=16.73 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=17.4
Q ss_pred cccccccccccccCCcceeeeCCCCchhhH
Q 045184 39 SSSGCAICLETFADDETCRIFLVCNHIFHL 68 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 68 (91)
....|..|...+.--.. ..-.|+..||.
T Consensus 24 ~~~rC~~C~kkvgl~~~--f~CrCg~~FC~ 51 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATS--FECRCGNNFCA 51 (85)
T ss_dssp CCCBCSSSCCBCSSSSC--EECTTCCEECT
T ss_pred cCccchhhCCeecccCC--eEcCCCCEecc
Confidence 34679999887554111 22349998874
No 216
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=27.93 E-value=25 Score=16.96 Aligned_cols=46 Identities=30% Similarity=0.483 Sum_probs=25.9
Q ss_pred cccccccccccccCCcceeeeC--CCCchhhHhhHHHHHh--------cCCCCccCCC
Q 045184 39 SSSGCAICLETFADDETCRIFL--VCNHIFHLNCIDGWLE--------INLTCPLCRN 86 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~C~~~w~~--------~~~~CP~Cr~ 86 (91)
....| ||......+.. +..- .|...||..|+.--.. ....||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~m-I~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSM-IQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCE-EECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCE-EEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34457 78665444422 2222 3778999999732110 1356999864
No 217
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=27.59 E-value=43 Score=15.92 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=22.9
Q ss_pred ccccccccccccCCcceeeeCCCCchhhHhhHH
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFHLNCID 72 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~ 72 (91)
...|.+|...+.-+........|+-..|.+|.+
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 467999977775443334457888888888854
No 218
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.75 E-value=78 Score=16.73 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=17.9
Q ss_pred CCCCchhhHhhHH------HHHhc-----CCCCccCCCC
Q 045184 60 LVCNHIFHLNCID------GWLEI-----NLTCPLCRNC 87 (91)
Q Consensus 60 ~~C~H~f~~~C~~------~w~~~-----~~~CP~Cr~~ 87 (91)
-.|+..||..|.. ..+.. ...||.|...
T Consensus 6 ~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 6 GKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp SCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred ccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 3588999999952 11222 3679998643
No 219
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.69 E-value=19 Score=19.32 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=22.9
Q ss_pred cccccccccccCCcceeeeCCCCchhhHhhHHHHHhcCCCCccCCCCCC
Q 045184 41 SGCAICLETFADDETCRIFLVCNHIFHLNCIDGWLEINLTCPLCRNCIL 89 (91)
Q Consensus 41 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w~~~~~~CP~Cr~~i~ 89 (91)
..|..|...+... .. ...=+..||..|.... ....|+.|..+|.
T Consensus 31 F~C~~C~~~L~~~-~f--~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 31 FCCFDCDSILAGE-IY--VMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp SBCTTTCCBCTTS-EE--EEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCcCCCCCCCCcC-EE--EeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 4566666666532 11 1123455666665442 3455777766654
No 220
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=25.28 E-value=70 Score=23.47 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=32.4
Q ss_pred cCCCCcccccccccccccCCcceeeeCCCCchhhHhhHHHH
Q 045184 34 TTTSSSSSGCAICLETFADDETCRIFLVCNHIFHLNCIDGW 74 (91)
Q Consensus 34 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C~~~w 74 (91)
........+|..|++....+.++.+.|.|-..||...+..-
T Consensus 40 ~~~~v~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~~~~~~~ 80 (854)
T 3ihp_A 40 AGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERH 80 (854)
T ss_dssp TTCCCCCSSCSSSSCCTTSTTCEEEETTTCCEECTTTHHHH
T ss_pred CCCcEecccCceecCCCCCCCCeEEcccccccccHHHHHHH
Confidence 33445567899999999888888888999999998776644
No 221
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=25.07 E-value=26 Score=17.21 Aligned_cols=11 Identities=9% Similarity=0.241 Sum_probs=6.6
Q ss_pred ccccccccccc
Q 045184 41 SGCAICLETFA 51 (91)
Q Consensus 41 ~~C~IC~~~~~ 51 (91)
..||+|...+.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2jr6_A 9 LVCPVTKGRLE 19 (68)
T ss_dssp CBCSSSCCBCE
T ss_pred eECCCCCCcCe
Confidence 35777766554
No 222
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.61 E-value=27 Score=17.17 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=6.2
Q ss_pred ccccccccccc
Q 045184 41 SGCAICLETFA 51 (91)
Q Consensus 41 ~~C~IC~~~~~ 51 (91)
..||+|...+.
T Consensus 9 L~CP~ck~~L~ 19 (68)
T 2hf1_A 9 LVCPLCKGPLV 19 (68)
T ss_dssp CBCTTTCCBCE
T ss_pred eECCCCCCcCe
Confidence 34666666553
No 223
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=24.44 E-value=35 Score=16.27 Aligned_cols=45 Identities=22% Similarity=0.472 Sum_probs=26.0
Q ss_pred cccccccccccccCCcceeeeCC--CC-chhhHhhHHHHH--hcCCCCccCCC
Q 045184 39 SSSGCAICLETFADDETCRIFLV--CN-HIFHLNCIDGWL--EINLTCPLCRN 86 (91)
Q Consensus 39 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~C~~~w~--~~~~~CP~Cr~ 86 (91)
+...| +|..... + ..+..-. |. ..||..|+.--. ...-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34557 8988632 3 2323344 55 789999996211 11345888864
No 224
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=24.12 E-value=62 Score=17.95 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=17.1
Q ss_pred ccccccccccccCCcceeeeCCCCchhh
Q 045184 40 SSGCAICLETFADDETCRIFLVCNHIFH 67 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~ 67 (91)
...|..|... ..+.+.|.|||+.|
T Consensus 34 ~~~C~~C~~~----~~LwlCL~CG~vgC 57 (129)
T 2g45_A 34 GWKCSKCDMR----ENLWLNLTDGSILC 57 (129)
T ss_dssp BCCCSSSSCC----SSEEEETTTCCEEE
T ss_pred CCcCccccCc----CceEEeccCCcccc
Confidence 4469998765 34567789999755
No 225
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.17 E-value=6.8 Score=18.04 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=7.2
Q ss_pred CCCccCCCCCC
Q 045184 79 LTCPLCRNCIL 89 (91)
Q Consensus 79 ~~CP~Cr~~i~ 89 (91)
..||.|...++
T Consensus 24 IrCpyCGyrii 34 (48)
T 4ayb_P 24 VRCPYCGYKII 34 (48)
T ss_dssp SCCTTTCCSCE
T ss_pred cccCccCcEEE
Confidence 35888876553
No 226
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.59 E-value=29 Score=15.71 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.0
Q ss_pred CCccCCCC
Q 045184 80 TCPLCRNC 87 (91)
Q Consensus 80 ~CP~Cr~~ 87 (91)
.||+|...
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 79999653
No 227
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=21.66 E-value=51 Score=17.19 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=17.6
Q ss_pred ccccccccccccCCcceeeeCC--CCchhhHh
Q 045184 40 SSGCAICLETFADDETCRIFLV--CNHIFHLN 69 (91)
Q Consensus 40 ~~~C~IC~~~~~~~~~~~~~~~--C~H~f~~~ 69 (91)
...|..|... ...+.+.|. |||++|.+
T Consensus 25 ~~~C~~C~~~---~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 25 LGTCQDCKVQ---GPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTCCSSSCCC---CSSCEEECCTTCCCEECCT
T ss_pred CCcCcCcCCC---CCCceeeecccCCCcccCC
Confidence 3468888743 233456688 99998743
No 228
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.63 E-value=36 Score=17.57 Aligned_cols=9 Identities=44% Similarity=1.453 Sum_probs=4.8
Q ss_pred CCCCccCCC
Q 045184 78 NLTCPLCRN 86 (91)
Q Consensus 78 ~~~CP~Cr~ 86 (91)
.++||.|..
T Consensus 23 ~F~CPfCnh 31 (85)
T 1wii_A 23 QFTCPFCNH 31 (85)
T ss_dssp CCCCTTTCC
T ss_pred eEcCCCCCC
Confidence 345666654
No 229
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=20.38 E-value=36 Score=18.77 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=18.7
Q ss_pred ccccccccccc----------CCcceeeeCCCCchhhHh
Q 045184 41 SGCAICLETFA----------DDETCRIFLVCNHIFHLN 69 (91)
Q Consensus 41 ~~C~IC~~~~~----------~~~~~~~~~~C~H~f~~~ 69 (91)
..|..|...-. ....+.+.|.|||+.|.+
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr 67 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGR 67 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECT
T ss_pred CcCccccccccccccccccccccccceeeeeCCccccCC
Confidence 45888875311 134566778999988743
Done!