BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045186
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Query: 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK 63
L+ +D + ELP + + +GL L+L L +LP +I+SL LR L + C +L
Sbjct: 106 LQHXTIDAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 64 KFPQIVASME---------DLLELYLDGTSITEVPSSIXXXXXXXXXX-XXXXXXXWTTI 113
+ P+ +AS + +L L L+ T I +P+SI
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 114 IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164
I+ + G C+ + G LK L L+DC L +LP
Sbjct: 225 IHHLPKLEELDLRG-----CTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 4 LRELLLDG-TDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL 62
L EL L G T ++ P + L +L LK C NLL+LP+ I L L L L GC L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 63 KKFPQIVASM 72
+ P ++A +
Sbjct: 291 SRLPSLIAQL 300
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60
++ L+ L + + + L +I L L +L L+GC L + P L+ L L CS
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Query: 61 KLKKFPQIVASMEDLLELYLDG-TSITEVPSSI 92
L P + + L +L L G +++ +PS I
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
++A RS QFD +EF+ F V+FS+ + L N + +E
Sbjct: 245 LVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVE 282
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
++A RS QFD +EF+ F V+FS+ + L N + +E
Sbjct: 149 LVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVE 186
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
++A RS QFD +EF+ F V+FS+ + L N + +E
Sbjct: 138 LVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVE 175
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
++A RS QFD +EF+ F V+FS+ + L N + +E
Sbjct: 150 LVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVE 187
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
++A RS QFD +EF+ F V+FS+ + L N + +E
Sbjct: 138 LVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVE 175
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 116 IMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
++A RS QFD +EF+ F V+FS+ + L N + +E
Sbjct: 148 LVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVE 185
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
RS QFD +EF+ F V+FS + L NL+ +E
Sbjct: 146 RSLQFDQREFVCLKFLVLFSSDVKNLENLQLVE 178
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153
RS QFD +EF+ F V+FS + L NL+ +E
Sbjct: 141 RSLQFDQREFVCLKFLVLFSSDVKNLENLQLVE 173
>pdb|3UA0|A Chain A, N-Terminal Domain Of Bombyx Mori Fibroin Mediates The
Assembly Of Silk In Response To Ph Decrease
pdb|3UA0|B Chain B, N-Terminal Domain Of Bombyx Mori Fibroin Mediates The
Assembly Of Silk In Response To Ph Decrease
Length = 134
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 363 QWTCFTSYNLNEFHHDFVGSDMAVAEA 389
Q+ +T+ N+N+F D+ GSD+ V +
Sbjct: 22 QYVAYTNANINDFDEDYFGSDVTVQSS 48
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 125 FDGKEFISCSF-------DVVFS-VSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRAN 176
F G CSF D FS +S SGL ++ D S P +W + +
Sbjct: 21 FAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPS----PGQIWFQKLS 76
Query: 177 GCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVP 210
S + +GA L+ +Y S H L +++P
Sbjct: 77 ATGSTIN-TGADGLQTLDYVVQSAEQHNLKLIIP 109
>pdb|3KOM|A Chain A, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
pdb|3KOM|B Chain B, Crystal Structure Of Apo Transketolase From Francisella
Tularensis
Length = 663
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 172 LVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNE 223
L R N + T N+ + Y NP KL+IV GSE+ NE
Sbjct: 519 LTRQNLXPVVQTQHQVANIARGGYLVKDNPDAKLTIVATGSEVELAVKVANE 570
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,201,851
Number of Sequences: 62578
Number of extensions: 485384
Number of successful extensions: 976
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 23
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)