Query 045186
Match_columns 411
No_of_seqs 511 out of 2605
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.8E-32 8.2E-37 303.6 29.6 325 2-355 657-1100(1153)
2 PLN00113 leucine-rich repeat r 99.7 1.5E-17 3.2E-22 184.7 13.6 174 2-180 140-320 (968)
3 PLN00113 leucine-rich repeat r 99.7 4.6E-17 1E-21 180.7 13.9 180 1-185 163-349 (968)
4 KOG0617 Ras suppressor protein 99.7 3.7E-19 7.9E-24 151.7 -5.5 167 1-179 32-201 (264)
5 PLN03210 Resistant to P. syrin 99.7 3.8E-16 8.2E-21 175.3 16.6 178 2-186 611-843 (1153)
6 KOG0444 Cytoskeletal regulator 99.6 2.4E-16 5.2E-21 157.1 -2.3 177 1-186 196-380 (1255)
7 KOG0617 Ras suppressor protein 99.5 9.8E-16 2.1E-20 130.9 -2.9 139 1-146 55-195 (264)
8 KOG0444 Cytoskeletal regulator 99.5 2E-15 4.3E-20 150.7 -1.8 156 1-164 221-379 (1255)
9 KOG4194 Membrane glycoprotein 99.4 4.8E-14 1E-18 140.1 1.3 171 4-178 247-426 (873)
10 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3.1E-17 138.9 8.3 119 2-132 199-318 (754)
11 KOG0472 Leucine-rich repeat pr 99.3 1.5E-14 3.2E-19 138.1 -6.1 147 3-157 115-285 (565)
12 KOG0472 Leucine-rich repeat pr 99.3 1.2E-14 2.5E-19 138.8 -8.4 179 3-185 92-291 (565)
13 PRK15387 E3 ubiquitin-protein 99.3 1.3E-11 2.7E-16 131.2 11.6 152 3-178 223-392 (788)
14 PRK15370 E3 ubiquitin-protein 99.3 9.5E-12 2.1E-16 132.6 9.8 155 3-178 179-335 (754)
15 PRK15387 E3 ubiquitin-protein 99.2 5.5E-11 1.2E-15 126.4 10.8 156 4-185 203-358 (788)
16 KOG0618 Serine/threonine phosp 99.2 2.1E-12 4.5E-17 134.6 -0.3 169 2-180 241-488 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.2 3.2E-11 6.9E-16 116.8 7.9 177 2-179 23-232 (319)
18 KOG4194 Membrane glycoprotein 99.2 1.1E-11 2.3E-16 123.6 4.6 147 4-158 80-232 (873)
19 KOG0618 Serine/threonine phosp 99.2 2E-12 4.4E-17 134.7 -0.9 111 45-161 379-490 (1081)
20 cd00116 LRR_RI Leucine-rich re 99.2 3.1E-11 6.7E-16 116.8 6.5 137 21-158 19-176 (319)
21 COG4886 Leucine-rich repeat (L 99.1 5.9E-11 1.3E-15 118.8 5.9 168 2-178 116-287 (394)
22 PF14580 LRR_9: Leucine-rich r 99.1 2.2E-10 4.7E-15 101.0 6.6 136 10-156 5-149 (175)
23 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.8E-15 101.6 5.5 120 3-126 20-148 (175)
24 KOG0532 Leucine-rich repeat (L 99.0 1.1E-11 2.4E-16 123.3 -3.0 145 4-158 100-245 (722)
25 COG4886 Leucine-rich repeat (L 99.0 8.7E-11 1.9E-15 117.6 2.7 153 3-164 141-294 (394)
26 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.3E-16 121.5 -3.7 161 6-177 79-243 (722)
27 KOG1259 Nischarin, modulator o 99.0 9.6E-11 2.1E-15 108.6 -0.1 125 4-132 286-413 (490)
28 KOG4237 Extracellular matrix p 98.9 8.3E-11 1.8E-15 112.6 -1.2 104 3-107 68-175 (498)
29 KOG4658 Apoptotic ATPase [Sign 98.9 8E-10 1.7E-14 119.8 4.9 105 2-107 545-653 (889)
30 PRK15386 type III secretion pr 98.9 5.3E-09 1.1E-13 103.0 8.9 60 24-89 51-111 (426)
31 KOG1259 Nischarin, modulator o 98.8 7.5E-10 1.6E-14 102.7 1.1 125 25-158 284-410 (490)
32 PLN03150 hypothetical protein; 98.8 8.5E-09 1.8E-13 109.0 8.5 106 26-131 419-528 (623)
33 KOG4658 Apoptotic ATPase [Sign 98.8 5.3E-09 1.2E-13 113.5 5.0 150 3-156 524-677 (889)
34 PLN03150 hypothetical protein; 98.7 3.2E-08 7E-13 104.7 9.5 86 75-165 420-508 (623)
35 KOG2120 SCF ubiquitin ligase, 98.7 6.8E-10 1.5E-14 102.9 -2.8 174 3-180 186-375 (419)
36 KOG4237 Extracellular matrix p 98.7 9E-10 1.9E-14 105.6 -2.7 171 1-178 90-332 (498)
37 KOG3207 Beta-tubulin folding c 98.7 3.4E-09 7.3E-14 102.9 0.5 149 2-158 121-282 (505)
38 KOG3207 Beta-tubulin folding c 98.5 2.1E-08 4.6E-13 97.4 0.9 159 1-164 145-317 (505)
39 PRK15386 type III secretion pr 98.5 3.3E-07 7.1E-12 90.5 8.7 151 2-178 52-210 (426)
40 KOG1909 Ran GTPase-activating 98.4 1.7E-07 3.8E-12 88.9 3.2 174 2-178 30-251 (382)
41 PF13855 LRR_8: Leucine rich r 98.4 3.4E-07 7.5E-12 66.2 3.8 58 2-60 1-60 (61)
42 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.4E-12 96.0 -0.1 125 4-132 74-200 (414)
43 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-07 2.4E-12 88.5 -1.6 148 2-158 210-374 (419)
44 KOG0531 Protein phosphatase 1, 98.2 2.3E-07 5E-12 93.6 -0.9 126 24-158 71-197 (414)
45 KOG1859 Leucine-rich repeat pr 98.1 9.6E-08 2.1E-12 98.0 -5.4 107 43-158 181-290 (1096)
46 KOG1859 Leucine-rich repeat pr 98.1 1.1E-07 2.4E-12 97.6 -5.8 125 4-132 166-293 (1096)
47 KOG1909 Ran GTPase-activating 98.1 3.1E-06 6.7E-11 80.5 4.2 87 71-158 155-252 (382)
48 PF13855 LRR_8: Leucine rich r 98.1 4E-06 8.6E-11 60.6 3.7 57 26-84 2-60 (61)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 53.9 3.6 40 2-42 1-40 (44)
50 KOG3665 ZYG-1-like serine/thre 97.9 6.1E-06 1.3E-10 87.8 2.2 81 48-129 147-231 (699)
51 PF12799 LRR_4: Leucine Rich r 97.8 2.8E-05 6.1E-10 52.2 4.0 38 50-88 2-39 (44)
52 KOG3665 ZYG-1-like serine/thre 97.8 1.8E-05 4E-10 84.2 4.1 148 2-156 122-284 (699)
53 COG5238 RNA1 Ran GTPase-activa 97.7 3.8E-05 8.3E-10 71.0 4.6 176 1-178 29-252 (388)
54 KOG4579 Leucine-rich repeat (L 97.6 6.8E-06 1.5E-10 68.5 -2.3 105 26-132 28-137 (177)
55 KOG4579 Leucine-rich repeat (L 97.5 1.6E-05 3.6E-10 66.2 -1.3 102 4-107 29-134 (177)
56 KOG2982 Uncharacterized conser 97.4 0.00012 2.5E-09 68.7 4.0 77 3-83 72-156 (418)
57 KOG1644 U2-associated snRNP A' 97.3 0.00026 5.7E-09 62.9 4.5 101 49-157 42-150 (233)
58 KOG2739 Leucine-rich acidic nu 97.2 0.00021 4.6E-09 65.8 2.2 80 72-157 64-153 (260)
59 KOG4341 F-box protein containi 97.1 2.2E-05 4.7E-10 76.5 -4.6 179 4-185 140-337 (483)
60 KOG4341 F-box protein containi 97.1 8.5E-05 1.8E-09 72.4 -1.5 177 2-181 190-414 (483)
61 KOG1644 U2-associated snRNP A' 97.0 0.001 2.2E-08 59.2 4.9 119 6-128 23-150 (233)
62 KOG1947 Leucine rich repeat pr 96.9 0.00022 4.7E-09 72.8 0.2 161 22-185 185-368 (482)
63 KOG1947 Leucine rich repeat pr 96.6 0.00067 1.5E-08 69.2 1.1 126 2-127 188-330 (482)
64 KOG2123 Uncharacterized conser 96.6 0.00015 3.3E-09 67.3 -3.4 96 25-124 19-123 (388)
65 KOG2982 Uncharacterized conser 96.4 0.00094 2E-08 62.8 0.2 84 47-131 69-159 (418)
66 KOG2739 Leucine-rich acidic nu 96.3 0.0029 6.3E-08 58.4 3.0 103 72-179 42-154 (260)
67 KOG2123 Uncharacterized conser 96.2 0.00078 1.7E-08 62.7 -1.5 77 75-158 21-99 (388)
68 PF00560 LRR_1: Leucine Rich R 95.9 0.0032 6.9E-08 35.4 0.7 21 3-23 1-21 (22)
69 COG5238 RNA1 Ran GTPase-activa 95.9 0.014 3.1E-07 54.4 5.3 155 2-158 58-253 (388)
70 PF00560 LRR_1: Leucine Rich R 94.8 0.014 3.1E-07 32.6 1.0 21 119-145 1-21 (22)
71 PF13306 LRR_5: Leucine rich r 94.7 0.11 2.4E-06 42.7 6.7 79 21-104 8-89 (129)
72 PF13306 LRR_5: Leucine rich r 94.4 0.14 3E-06 42.1 6.7 97 2-105 12-112 (129)
73 PF13504 LRR_7: Leucine rich r 93.8 0.037 8E-07 28.9 1.2 17 2-18 1-17 (17)
74 KOG3864 Uncharacterized conser 93.7 0.025 5.4E-07 50.6 0.7 81 73-158 101-187 (221)
75 PF13504 LRR_7: Leucine rich r 92.8 0.077 1.7E-06 27.7 1.5 16 74-89 2-17 (17)
76 KOG3864 Uncharacterized conser 90.7 0.085 1.8E-06 47.2 0.4 79 50-128 102-186 (221)
77 smart00369 LRR_TYP Leucine-ric 89.6 0.21 4.5E-06 28.9 1.3 20 1-20 1-20 (26)
78 smart00370 LRR Leucine-rich re 89.6 0.21 4.5E-06 28.9 1.3 20 1-20 1-20 (26)
79 smart00369 LRR_TYP Leucine-ric 89.4 0.34 7.4E-06 28.0 2.2 21 72-92 1-21 (26)
80 smart00370 LRR Leucine-rich re 89.4 0.34 7.4E-06 28.0 2.2 21 72-92 1-21 (26)
81 KOG4308 LRR-containing protein 88.3 0.013 2.9E-07 60.0 -7.4 156 4-160 89-275 (478)
82 KOG0473 Leucine-rich repeat pr 86.5 0.012 2.7E-07 53.6 -7.8 85 21-107 38-122 (326)
83 KOG0473 Leucine-rich repeat pr 80.4 0.091 2E-06 48.1 -4.9 84 47-159 40-123 (326)
84 KOG4308 LRR-containing protein 79.1 0.063 1.4E-06 55.1 -7.2 16 92-107 168-183 (478)
85 smart00367 LRR_CC Leucine-rich 72.3 3.7 8.1E-05 23.6 2.1 19 96-114 2-20 (26)
86 smart00364 LRR_BAC Leucine-ric 64.4 3.9 8.4E-05 23.9 1.0 15 118-132 2-16 (26)
87 smart00365 LRR_SD22 Leucine-ri 64.3 4.4 9.6E-05 23.7 1.3 17 1-17 1-17 (26)
88 PF13516 LRR_6: Leucine Rich r 62.9 3.8 8.2E-05 23.0 0.8 15 118-132 2-16 (24)
89 KOG3763 mRNA export factor TAP 56.7 5.6 0.00012 41.0 1.3 17 235-251 440-456 (585)
90 PF08557 Lipid_DES: Sphingolip 51.3 3.2 6.9E-05 26.8 -0.9 13 398-410 10-22 (39)
91 smart00368 LRR_RI Leucine rich 42.6 17 0.00036 21.4 1.4 15 118-132 2-16 (28)
92 KOG3763 mRNA export factor TAP 23.0 59 0.0013 33.9 2.3 61 72-132 217-284 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-32 Score=303.56 Aligned_cols=325 Identities=26% Similarity=0.325 Sum_probs=214.3
Q ss_pred CceeEEEEeCC-CCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccC---------
Q 045186 2 ECLRELLLDGT-DIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS--------- 71 (411)
Q Consensus 2 ~~L~~L~L~~~-~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~--------- 71 (411)
++|+.|+|++| .+..+|.+++++++|+.|++++|+.++.+|..+ ++++|+.|++++|+.++.+|....+
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 56777777775 455777777777777777777777777777655 6777777777777665555432110
Q ss_pred -----------------------------------------CCCCcEEEccCCC-CCccChhhhccCCCCEEecCCCCCC
Q 045186 72 -----------------------------------------MEDLLELYLDGTS-ITEVPSSIELLHGLELLNLNNCKNL 109 (411)
Q Consensus 72 -----------------------------------------l~~L~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~ 109 (411)
.++|+.|+|++|. +.++|.+++++++|+.|++++|..+
T Consensus 736 ~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 736 AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 1234455555543 3357777778888888888877532
Q ss_pred hh--HH--------------------HhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCCC
Q 045186 110 WT--TI--------------------IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQIP 167 (411)
Q Consensus 110 ~~--~~--------------------l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~ 167 (411)
.. .. ....++|+.|+|++|.++. +|.++..+++|+.|+|++|++++.+|...
T Consensus 816 ~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~------iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 816 ETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE------VPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc------ChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 11 10 0112456667777777777 99999999999999999999999988754
Q ss_pred ---CCCceEEecCCCCCCcccCCc-------------------------Ccc----hhhhcccCCCCCceEEEccCCCCC
Q 045186 168 ---PNLWLVRANGCSSLVTLSGAL-------------------------NLR----KSEYTAVSNPSHKLSIVVPGSEIP 215 (411)
Q Consensus 168 ---~~L~~L~~~~c~~L~~l~~~~-------------------------nl~----~~~~~~~~~~~~~~~~~~pg~~iP 215 (411)
++|+.+++.+|.+|+.++... |+. ...++ .......+.+||.++|
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~---~~~~~~~~~l~g~evp 966 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQ---QQSIFKQLILSGEEVP 966 (1153)
T ss_pred ccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhc---ccccceEEECCCccCc
Confidence 577888999999998765421 110 00000 0112235789999999
Q ss_pred cccccCCCCceEE-EEcCCCCCCCCceeeEEeEEEEecCCCCccccccccCceeeeEEEEeeCCCeeeeeeeeeecccCC
Q 045186 216 KWFMYQNEGSSIT-VTRPSYFYNMNKVVGYAICCVFHVPKHSIGIKIWRSYATYQLECSMDGSGTISYIDFREIFGHCGS 294 (411)
Q Consensus 216 ~Wf~~~~~~~sl~-~~lp~~~~~~~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~s 294 (411)
+||.|++.|++++ |.+|+.|. ...|.||++|+|+++.+.... ....++.+.|++.+..+..+. ....
T Consensus 967 ~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~~~----~~~~~~~~~c~~~~~~~~~~~-------~~~~ 1034 (1153)
T PLN03210 967 SYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDSESFFII----SVSFDIQVCCRFIDRLGNHFD-------SPYQ 1034 (1153)
T ss_pred hhccCCcccceeeeeccCCccc-CCCccceEEEEEEecCccccC----CCceeEEEEEEEECCCCCccc-------cCCC
Confidence 9999999999998 99999998 788999999999986653211 123456778888776544331 1234
Q ss_pred CeEEEEEEecccc-------c---cc--CCCCCcceEEEEEEeccccccccCCCCCcEEEEeeeEEEecCCcc
Q 045186 295 DHLWLLYLSRQRC-------Y---DT--NWHFESNHFRLSFIDFREKFGMAGSDPVLKVKRFSFHPVYMHEVE 355 (411)
Q Consensus 295 dhl~l~~~~~~~~-------~---~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Vk~cGv~liy~~~~~ 355 (411)
+|+|+.|.....+ . +. .....++|+++.|.+.. . ...++||+||||++|+.+..
T Consensus 1035 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~------~-~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1035 PHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTN------K-NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred ceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEec------C-CCCeEEEeeeEEEeccCCCc
Confidence 5555554442111 0 10 11234778888887651 1 12369999999999976644
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=1.5e-17 Score=184.66 Aligned_cols=174 Identities=22% Similarity=0.254 Sum_probs=126.6
Q ss_pred CceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 2 ECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 2 ~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
++|++|+|++|.+. .+|..++++++|++|+|++|...+.+|..+.++++|++|+|++|...+.+|..++++++|+.|+|
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 46666777766665 56667777888888888877666677777777888888888887766777777778888888888
Q ss_pred cCCCCC-ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186 81 DGTSIT-EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157 (411)
Q Consensus 81 ~~~~i~-~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c 157 (411)
++|.+. .+|..++++++|+.|++++|. +..+..++.+++|+.|++++|.+.+ .+|..+..+++|+.|++++|
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-----PIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec-----cCchhHhhccCcCEEECcCC
Confidence 888777 677778888888888888776 3445567777888888888877764 36777777788888888877
Q ss_pred ccccccCCC---CCCCceEEecCCCC
Q 045186 158 KRLQSLPQI---PPNLWLVRANGCSS 180 (411)
Q Consensus 158 ~~l~~lp~l---~~~L~~L~~~~c~~ 180 (411)
.....+|.. .++|+.|++.+|.-
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCcc
Confidence 655555542 25677777766543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.71 E-value=4.6e-17 Score=180.73 Aligned_cols=180 Identities=21% Similarity=0.224 Sum_probs=154.1
Q ss_pred CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
+++|++|+|++|.+. .+|.+++++++|++|+|++|...+.+|..+.++++|++|+|++|...+.+|..++++++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 478999999999987 7888899999999999999887778999999999999999999887788999999999999999
Q ss_pred ccCCCCC-ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186 80 LDGTSIT-EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED 156 (411)
Q Consensus 80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~ 156 (411)
+++|.+. .+|..++.+++|+.|++++|. ...+..+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-----EIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc-----CCChhHcCCCCCcEEECCC
Confidence 9999988 789999999999999999987 3455668889999999999998875 3778888999999999999
Q ss_pred cccccccCCC---CCCCceEEecCCCCCCccc
Q 045186 157 CKRLQSLPQI---PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 157 c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~ 185 (411)
|.....+|.. .++|+.|++.+|.-...++
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 8766666543 2678888888775443443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.7e-19 Score=151.70 Aligned_cols=167 Identities=24% Similarity=0.348 Sum_probs=148.0
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
|.+++.|.|+.|.++.+|+.|+.+.+|++|++.+ +.++++|.+++.+++|+.|+++- +.+..+|.++|.++.|+.|||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 4577889999999999999999999999999998 68999999999999999999987 788999999999999999999
Q ss_pred cCCCCC--ccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186 81 DGTSIT--EVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157 (411)
Q Consensus 81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c 157 (411)
.+|.+. .+|..+..++.|+-|.+++|. ...+..++.+++|+.|.+..|.+.+ +|..++.++.|+.|.+++|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~------lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS------LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh------CcHHHHHHHHHHHHhcccc
Confidence 999987 799999999999999999998 5566779999999999999999999 9999999999999999996
Q ss_pred ccccccCCCCCCCceEEecCCC
Q 045186 158 KRLQSLPQIPPNLWLVRANGCS 179 (411)
Q Consensus 158 ~~l~~lp~l~~~L~~L~~~~c~ 179 (411)
+ ++-+ |+.|-.|++-+-+
T Consensus 184 r-l~vl---ppel~~l~l~~~k 201 (264)
T KOG0617|consen 184 R-LTVL---PPELANLDLVGNK 201 (264)
T ss_pred e-eeec---ChhhhhhhhhhhH
Confidence 5 4444 4455555554443
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=3.8e-16 Score=175.32 Aligned_cols=178 Identities=29% Similarity=0.464 Sum_probs=130.6
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
.+|++|+|.++.+..+|..+..+++|+.|+|++|..++.+|. +..+++|++|+|++|..+..+|..++++++|+.|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 467777777777777777777888888888888777777775 7778888888888888888888888888888888888
Q ss_pred CC-CCCccChhhhccCCCCEEecCCCCCChh--H----------------------------------------------
Q 045186 82 GT-SITEVPSSIELLHGLELLNLNNCKNLWT--T---------------------------------------------- 112 (411)
Q Consensus 82 ~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~--~---------------------------------------------- 112 (411)
+| .++.+|..+ ++++|+.|++++|..+.. .
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence 76 566777665 677777777777752210 0
Q ss_pred ----HHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC--CCCCceEEecCCCCCCcccC
Q 045186 113 ----IIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI--PPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 113 ----~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c~~L~~l~~ 186 (411)
....+++|+.|+|++|.... .+|.+++++++|+.|+|++|+.++.+|.. +++|+.|++++|..|+.++.
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~-----~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLV-----ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred cchhhhhccccchheeCCCCCCcc-----ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence 00112356666666653222 37888888899999999999888888864 47888999999988887764
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=2.4e-16 Score=157.14 Aligned_cols=177 Identities=25% Similarity=0.342 Sum_probs=134.7
Q ss_pred CCceeEEEEeCCCC--CcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 1 MECLRELLLDGTDI--KELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l--~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
|+.|++|.+++++- ..+|.++..+.+|..+||+. +.+..+|..+.++.+|+.|+||+ +.++.+....+.+.+|++|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETL 273 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhh
Confidence 34566777777543 36788888888888888886 57888888888888999999988 5677777677777888888
Q ss_pred EccCCCCCccChhhhccCCCCEEecCCCC---CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186 79 YLDGTSITEVPSSIELLHGLELLNLNNCK---NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155 (411)
Q Consensus 79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~ 155 (411)
+|+.|.++.+|+.+.++++|+.|.+.+|+ ...++.|+.+..|+.+..++|.+.- +|.++..|.+|+.|.|+
T Consensus 274 NlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl------VPEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 274 NLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL------VPEGLCRCVKLQKLKLD 347 (1255)
T ss_pred ccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc------CchhhhhhHHHHHhccc
Confidence 88888888888888888888888888777 3345557888888888888888777 88888888888888887
Q ss_pred CcccccccCC---CCCCCceEEecCCCCCCcccC
Q 045186 156 DCKRLQSLPQ---IPPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 156 ~c~~l~~lp~---l~~~L~~L~~~~c~~L~~l~~ 186 (411)
+| .+..+|+ +.+.|+.|++...++|..=|.
T Consensus 348 ~N-rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 348 HN-RLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cc-ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 64 4555665 346777888887777765444
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=9.8e-16 Score=130.85 Aligned_cols=139 Identities=25% Similarity=0.330 Sum_probs=125.5
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCC-cccchhccCCCCCcEEE
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKL-KKFPQIVASMEDLLELY 79 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~ 79 (411)
+.+|+.|++.+|+|+++|.+++.+++|+.|++.- +.+..+|..++.++.|+.|||+.|+.- ..+|..+--|..|+.|+
T Consensus 55 l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred hhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 4689999999999999999999999999999997 578889999999999999999997643 47888888899999999
Q ss_pred ccCCCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcC
Q 045186 80 LDGTSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGL 146 (411)
Q Consensus 80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l 146 (411)
|+.|.++-+|..++++++|+.|.+.+|.-+ .+..++.++.|++|.+.||.++- +|..++++
T Consensus 134 l~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v------lppel~~l 195 (264)
T KOG0617|consen 134 LGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV------LPPELANL 195 (264)
T ss_pred hcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee------cChhhhhh
Confidence 999999999999999999999999999843 45569999999999999999999 99777654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.49 E-value=2e-15 Score=150.71 Aligned_cols=156 Identities=26% Similarity=0.389 Sum_probs=144.8
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
|.||+.++|+.|++..+|..+-++++|+.|+|++ +.++.+...++...+|++|++|. +.++.+|..+.+++.|+.|.+
T Consensus 221 l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred hhhhhhccccccCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHh
Confidence 4689999999999999999999999999999999 57888877777889999999999 679999999999999999999
Q ss_pred cCCCCC--ccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186 81 DGTSIT--EVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157 (411)
Q Consensus 81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c 157 (411)
.+|.++ .+|+.||++.+|+.+..++|. .+.+..++.+..|+.|.|+.|.+.+ +|..|.-|+.|+.||+..|
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT------LPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT------LPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee------chhhhhhcCCcceeeccCC
Confidence 999877 999999999999999999998 6778889999999999999999999 9999999999999999999
Q ss_pred ccccccC
Q 045186 158 KRLQSLP 164 (411)
Q Consensus 158 ~~l~~lp 164 (411)
+++.--|
T Consensus 373 pnLVMPP 379 (1255)
T KOG0444|consen 373 PNLVMPP 379 (1255)
T ss_pred cCccCCC
Confidence 9887544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.41 E-value=4.8e-14 Score=140.09 Aligned_cols=171 Identities=24% Similarity=0.255 Sum_probs=106.2
Q ss_pred eeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 4 LRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
|+.|.|..|.|..+.+. |-.|.++++|+|..| .+..+ ..++.+|++|+.|+||.|..-.--++...-.++|++|+|+
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 33344444444433322 445556666666653 33332 3445677777777777744333334555556778888888
Q ss_pred CCCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 82 GTSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
.|.|+.+++ ++..|..|+.|+|+.|. .+....+..+++|++|||+.|.+..|-.++..+ +..+++|+.|++.+|
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~--f~gl~~LrkL~l~gN- 402 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA--FNGLPSLRKLRLTGN- 402 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh--hccchhhhheeecCc-
Confidence 888887765 46667777788887776 333444778888888888888877743333332 556888888888875
Q ss_pred cccccCCC----CCCCceEEecCC
Q 045186 159 RLQSLPQI----PPNLWLVRANGC 178 (411)
Q Consensus 159 ~l~~lp~l----~~~L~~L~~~~c 178 (411)
++++||.- .++|++|++.+.
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred eeeecchhhhccCcccceecCCCC
Confidence 47777652 266777777654
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=1.4e-12 Score=138.86 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=84.1
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++|+.|+|++|.|+.+|..+. ++|+.|++++| .+..+|..+. .+|+.|+|++|. +..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECc
Confidence 468899999999999987654 58999999985 5778887553 478899998854 667887664 578888998
Q ss_pred CCCCCccChhhhccCCCCEEecCCCCCCh-hHHHhhccccceeecCCCCccc
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCKNLW-TTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+|.++.+|..+. ++|+.|++++|.-.. +..+ .++|+.|++++|.++.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc
Confidence 888888887654 578888888886211 1101 1245555555555554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.35 E-value=1.5e-14 Score=138.10 Aligned_cols=147 Identities=27% Similarity=0.338 Sum_probs=88.8
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
.|+.|+.+.|.++++|++++.+..|..|+..+ +.+.++|..+.++.+|..|++.+ ++++.+|+..-+|+.|++||...
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccch
Confidence 45667777777777777777777777777665 45666666666666666666666 34444544444455555555555
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCCh------------------------hHHHhhccccceeecCCCCccccccccc
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNLW------------------------TTIIYIMAFARSFQFDGKEFISCSFDVV 138 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~------------------------~~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 138 (411)
|-++.+|..++.+.+|..|++..|+... ......+++|..|||..|++..
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke------ 266 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE------ 266 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc------
Confidence 5555555555555555555555444222 2224466666666776666666
Q ss_pred cchhhhcCCCCCEecccCc
Q 045186 139 FSVSISGLLNLKELELEDC 157 (411)
Q Consensus 139 lp~~l~~l~~L~~L~L~~c 157 (411)
+|..+..+.+|.+||+++|
T Consensus 267 ~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNN 285 (565)
T ss_pred CchHHHHhhhhhhhcccCC
Confidence 6666666666667776664
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=1.2e-14 Score=138.78 Aligned_cols=179 Identities=20% Similarity=0.292 Sum_probs=138.7
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+++.|+.+.|.+.++|..++.+.+|+.|+.+. +.+..+|+.++.+..|+.|+..+ +.+..+|+.++++.+|..|++.+
T Consensus 92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG 169 (565)
T ss_pred HHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc
Confidence 56778999999999999999999999999999 57888999999999999999988 67899999999999999999999
Q ss_pred CCCCccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccc------c----------ccccccchhhh-
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFIS------C----------SFDVVFSVSIS- 144 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~------~----------~~~~~lp~~l~- 144 (411)
|.++++|+..-+++.|++||...|. ...+..++.+.+|+-|+|..|.+.. | .....+|+.+.
T Consensus 170 n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~ 249 (565)
T KOG0472|consen 170 NKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLK 249 (565)
T ss_pred cchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhc
Confidence 9999999988889999999988876 4445556666666666666665443 1 01111554443
Q ss_pred cCCCCCEecccCcccccccCC---CCCCCceEEecCCCCCCccc
Q 045186 145 GLLNLKELELEDCKRLQSLPQ---IPPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 145 ~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~~~~c~~L~~l~ 185 (411)
++++|..||+.+| +++++|. +-.+|..|++++. .+..+|
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN-~is~Lp 291 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNN-DISSLP 291 (565)
T ss_pred ccccceeeecccc-ccccCchHHHHhhhhhhhcccCC-ccccCC
Confidence 6778888888875 4677765 2367788888764 234443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.30 E-value=1.3e-11 Score=131.21 Aligned_cols=152 Identities=22% Similarity=0.318 Sum_probs=83.6
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+|+.|++.+|+|+.+|.. +++|++|+|++| .++.+|.. .++|+.|+|++| .+..+|... .+|+.|++++
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCC-chhhhhhch---hhcCEEECcC
Confidence 577888888888877752 467888888874 66667642 346666666664 344454421 3344445555
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCCh-hH-------------HHh----hccccceeecCCCCccccccccccchhhh
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNLW-TT-------------IIY----IMAFARSFQFDGKEFISCSFDVVFSVSIS 144 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~~-------------~l~----~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~ 144 (411)
|.++.+|.. +++|+.|++++|.... +. .+. ...+|+.|+|++|+++. +|..
T Consensus 292 N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~------LP~l-- 360 (788)
T PRK15387 292 NQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS------LPTL-- 360 (788)
T ss_pred Ccccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCC------CCCC--
Confidence 544444431 2344444444443100 00 011 11367778888877777 6642
Q ss_pred cCCCCCEecccCcccccccCCCCCCCceEEecCC
Q 045186 145 GLLNLKELELEDCKRLQSLPQIPPNLWLVRANGC 178 (411)
Q Consensus 145 ~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c 178 (411)
..+|+.|++++| .+..+|.++.+|+.|+++++
T Consensus 361 -p~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N 392 (788)
T PRK15387 361 -PSELYKLWAYNN-RLTSLPALPSGLKELIVSGN 392 (788)
T ss_pred -Ccccceehhhcc-ccccCcccccccceEEecCC
Confidence 234555566553 34555555555666666554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=9.5e-12 Score=132.57 Aligned_cols=155 Identities=21% Similarity=0.316 Sum_probs=114.8
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+...|+++++.++.+|..+. ++|+.|+|++| .+..+|..+. .+|++|++++| .+..+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 56789999999998887664 57999999985 6778887654 58999999985 5778887653 4799999999
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ 161 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~ 161 (411)
|.+..+|..+. .+|+.|++++|... .+..+ .++|+.|+|++|+++. +|..+. ++|+.|++++|. +.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~------LP~~lp--~sL~~L~Ls~N~-Lt 317 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT------LPAHLP--SGITHLNVQSNS-LT 317 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc------Ccccch--hhHHHHHhcCCc-cc
Confidence 99999998764 58999999988622 12112 3589999999999988 775443 456777777653 44
Q ss_pred ccCC-CCCCCceEEecCC
Q 045186 162 SLPQ-IPPNLWLVRANGC 178 (411)
Q Consensus 162 ~lp~-l~~~L~~L~~~~c 178 (411)
.+|. ++++|+.|++.+|
T Consensus 318 ~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 318 ALPETLPPGLKTLEAGEN 335 (754)
T ss_pred cCCccccccceeccccCC
Confidence 5553 4566666666665
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.21 E-value=5.5e-11 Score=126.38 Aligned_cols=156 Identities=23% Similarity=0.274 Sum_probs=120.1
Q ss_pred eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT 83 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (411)
-..|+|++++|+.+|..+. ++|+.|++.+ +.++.+|. .+++|++|+|++| .++.+|.. .++|+.|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPD-NNLTSLPA---LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccC-CcCCCCCC---CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4579999999999998775 4899999998 57888886 3689999999995 77888864 468999999999
Q ss_pred CCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccccc
Q 045186 84 SITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSL 163 (411)
Q Consensus 84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~l 163 (411)
.++.+|.. +.+|+.|++++|....- -..+++|+.|+|++|++.. +|... .+|+.|++++| .++.+
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N~Lt~L--P~~p~~L~~LdLS~N~L~~------Lp~lp---~~L~~L~Ls~N-~L~~L 337 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGNQLTSL--PVLPPGLQELSVSDNQLAS------LPALP---SELCKLWAYNN-QLTSL 337 (788)
T ss_pred chhhhhhc---hhhcCEEECcCCccccc--cccccccceeECCCCcccc------CCCCc---ccccccccccC-ccccc
Confidence 99988863 36788999999973211 1235789999999999998 87532 35667777764 46677
Q ss_pred CCCCCCCceEEecCCCCCCccc
Q 045186 164 PQIPPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 164 p~l~~~L~~L~~~~c~~L~~l~ 185 (411)
|.+|.+|+.|+++++ .|+.+|
T Consensus 338 P~lp~~Lq~LdLS~N-~Ls~LP 358 (788)
T PRK15387 338 PTLPSGLQELSVSDN-QLASLP 358 (788)
T ss_pred cccccccceEecCCC-ccCCCC
Confidence 777777888887764 455554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.20 E-value=2.1e-12 Score=134.60 Aligned_cols=169 Identities=26% Similarity=0.392 Sum_probs=105.6
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcc-----------------------cccccCCCCCccEEEeeC
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLS-----------------------LPIAISSLKCLRNLKLSG 58 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~-----------------------lp~~i~~l~~L~~L~Ls~ 58 (411)
.+|++++++.+.++.+|.+++.+.+|+.|+..+| .+.. +|.....+++|++|+|..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 3688888888888888888888888888888874 3333 455555577788888776
Q ss_pred CCCCcccchh--------------------------------------------------ccCCCCCcEEEccCCCCCcc
Q 045186 59 CSKLKKFPQI--------------------------------------------------VASMEDLLELYLDGTSITEV 88 (411)
Q Consensus 59 c~~l~~lp~~--------------------------------------------------l~~l~~L~~L~L~~~~i~~l 88 (411)
| .+..+|+. +.++++|+.|+|++|.+..+
T Consensus 320 N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 320 N-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred c-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 3 34433321 12334555555555555555
Q ss_pred Chh-hhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc--cC
Q 045186 89 PSS-IELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS--LP 164 (411)
Q Consensus 89 p~~-i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~--lp 164 (411)
|++ +.+++.|+.|+|+||+ ...+..+..+..|++|...+|++.. +| .+.+++.|+.+||+.|. |+. +|
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~------fP-e~~~l~qL~~lDlS~N~-L~~~~l~ 470 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS------FP-ELAQLPQLKVLDLSCNN-LSEVTLP 470 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee------ch-hhhhcCcceEEecccch-hhhhhhh
Confidence 543 4455555555555555 2223445555555555555555555 66 56677778888887643 433 23
Q ss_pred C-CC-CCCceEEecCCCC
Q 045186 165 Q-IP-PNLWLVRANGCSS 180 (411)
Q Consensus 165 ~-l~-~~L~~L~~~~c~~ 180 (411)
. +| ++|++|+++|.+.
T Consensus 471 ~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhCCCcccceeeccCCcc
Confidence 2 46 7888888888764
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=3.2e-11 Score=116.75 Aligned_cols=177 Identities=18% Similarity=0.143 Sum_probs=105.6
Q ss_pred CceeEEEEeCCCCC-----cccccccCCCCccEEEEecCCCC------cccccccCCCCCccEEEeeCCCCCcccchhcc
Q 045186 2 ECLRELLLDGTDIK-----ELPVSIELLSGLVQLSLKGCKNL------LSLPIAISSLKCLRNLKLSGCSKLKKFPQIVA 70 (411)
Q Consensus 2 ~~L~~L~L~~~~l~-----~lp~si~~l~~L~~L~L~~c~~l------~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 70 (411)
++|++|+++++.++ .++..+...++|+.|+++++... ..++..+..+++|+.|++++|......+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 45778888887773 34555666777888887775332 12334455677888888887665544444444
Q ss_pred CCCC---CcEEEccCCCCCc-----cChhhhcc-CCCCEEecCCCCCCh------hHHHhhccccceeecCCCCcccccc
Q 045186 71 SMED---LLELYLDGTSITE-----VPSSIELL-HGLELLNLNNCKNLW------TTIIYIMAFARSFQFDGKEFISCSF 135 (411)
Q Consensus 71 ~l~~---L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~~~~------~~~l~~l~~L~~L~Ls~n~~~~~~~ 135 (411)
.+.. |+.|++++|.+.. +...+..+ ++|+.|++++|.... ...+..+++|++|++++|.+.. ..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD-AG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch-HH
Confidence 4443 7888888777662 23345555 777888888776331 1225556677788887777663 11
Q ss_pred ccccchhhhcCCCCCEecccCcccc----cccC---CCCCCCceEEecCCC
Q 045186 136 DVVFSVSISGLLNLKELELEDCKRL----QSLP---QIPPNLWLVRANGCS 179 (411)
Q Consensus 136 ~~~lp~~l~~l~~L~~L~L~~c~~l----~~lp---~l~~~L~~L~~~~c~ 179 (411)
...++..+..+++|+.|++++|..- ..++ .-.++|++|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 1123444555667777887776421 1111 112567777777663
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-11 Score=123.64 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=121.0
Q ss_pred eeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCccc-chhccCCCCCcEEEcc
Q 045186 4 LRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLELYLD 81 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~ 81 (411)
-+.|++++|.+..+.. .|.++++|+.++|.. +.++.+|.......+|+.|+|.+| .+.++ .+.+.-++.|+.|||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 4679999999997754 488999999999998 588999986666677999999995 45444 3567778899999999
Q ss_pred CCCCCccCh-hhhccCCCCEEecCCCCCC--hhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCc
Q 045186 82 GTSITEVPS-SIELLHGLELLNLNNCKNL--WTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDC 157 (411)
Q Consensus 82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c 157 (411)
.|.|+++|. ++.+-.+++.|+|++|... ....+..+.+|..|.|+.|.+++ +|. .+..|++|+.|+|..|
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt------Lp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT------LPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc------cCHHHhhhcchhhhhhcccc
Confidence 999998875 4666689999999999843 34458889999999999999999 984 5667999999999886
Q ss_pred c
Q 045186 158 K 158 (411)
Q Consensus 158 ~ 158 (411)
.
T Consensus 232 ~ 232 (873)
T KOG4194|consen 232 R 232 (873)
T ss_pred c
Confidence 4
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=2e-12 Score=134.68 Aligned_cols=111 Identities=24% Similarity=0.360 Sum_probs=93.5
Q ss_pred cCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhcccccee
Q 045186 45 ISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSF 123 (411)
Q Consensus 45 i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L 123 (411)
+.++++|+.|+|++ +.+..+|. .+.++..|++|+|+||.++.+|..+..+..|++|...+|.......+..++.|+.+
T Consensus 379 l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL 457 (1081)
T ss_pred hccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence 55679999999999 67899995 56789999999999999999999999999999999999986555579999999999
Q ss_pred ecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186 124 QFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ 161 (411)
Q Consensus 124 ~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~ 161 (411)
|++.|+++.-. +|.... -++|++||+++|..+.
T Consensus 458 DlS~N~L~~~~----l~~~~p-~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 458 DLSCNNLSEVT----LPEALP-SPNLKYLDLSGNTRLV 490 (1081)
T ss_pred ecccchhhhhh----hhhhCC-CcccceeeccCCcccc
Confidence 99999988721 332221 2899999999998643
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=3.1e-11 Score=116.84 Aligned_cols=137 Identities=20% Similarity=0.108 Sum_probs=60.3
Q ss_pred ccCCCCccEEEEecCCCC----cccccccCCCCCccEEEeeCCCCC------cccchhccCCCCCcEEEccCCCCC-ccC
Q 045186 21 IELLSGLVQLSLKGCKNL----LSLPIAISSLKCLRNLKLSGCSKL------KKFPQIVASMEDLLELYLDGTSIT-EVP 89 (411)
Q Consensus 21 i~~l~~L~~L~L~~c~~l----~~lp~~i~~l~~L~~L~Ls~c~~l------~~lp~~l~~l~~L~~L~L~~~~i~-~lp 89 (411)
+..+.+|+.|++++|... ..++..+...++|++|+++++... ..++..+..+++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344444555555554321 123333444455555555553322 122233444555555555555554 233
Q ss_pred hhhhccCC---CCEEecCCCCCCh------hHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 90 SSIELLHG---LELLNLNNCKNLW------TTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 90 ~~i~~l~~---L~~L~L~~~~~~~------~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
..+..+.. |+.|++++|.... ...+..+ ++|+.|++++|.++. .....++..+..+.+|+.|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-ASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-hHHHHHHHHHHhCCCcCEEECcCCC
Confidence 33333333 5555555554221 0113333 555555555555542 0011133334444555555555543
No 21
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=5.9e-11 Score=118.82 Aligned_cols=168 Identities=29% Similarity=0.457 Sum_probs=126.6
Q ss_pred CceeEEEEeCCCCCcccccccCCC-CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLS-GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
++++.|++.++.++++++....++ +|+.|++++ +.+..+|..+..+++|+.|++++ +.+..+|...+.+++|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheec
Confidence 357788888888888888777774 888888887 56777776678888888888888 467777776667788888888
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR 159 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~ 159 (411)
++|.+..+|..+..+..|+.|.+++|. ......+..+.++..|.+.+|.+.. ++..++.+++|+.|++++|.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------~~~~~~~l~~l~~L~~s~n~- 266 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------LPESIGNLSNLETLDLSNNQ- 266 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------ccchhccccccceecccccc-
Confidence 888888888877777778888888884 4445557778888888888888777 77778888888888888754
Q ss_pred ccccCCCC--CCCceEEecCC
Q 045186 160 LQSLPQIP--PNLWLVRANGC 178 (411)
Q Consensus 160 l~~lp~l~--~~L~~L~~~~c 178 (411)
+..++.+. .+++.|++.+.
T Consensus 267 i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 267 ISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccccCccCEEeccCc
Confidence 55555433 45666666554
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=2.2e-10 Score=100.99 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=44.5
Q ss_pred eCCCCCcccccccCCCCccEEEEecCCCCcccccccC-CCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCcc
Q 045186 10 DGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAIS-SLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEV 88 (411)
Q Consensus 10 ~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l 88 (411)
..+.|.++|. +.+..++++|+|++| .+..+. .++ .+.+|+.|+|++ +.++.++ .+..++.|++|++++|.|+.+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccc-ccccccccccccccc-cccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCCCCCCcc
Confidence 3344555555 566667888888884 555553 354 477888888888 4566664 466788888888888888887
Q ss_pred Chhh-hccCCCCEEecCCCCCCh---hHHHhhccccceeecCCCCccccccccccc----hhhhcCCCCCEecccC
Q 045186 89 PSSI-ELLHGLELLNLNNCKNLW---TTIIYIMAFARSFQFDGKEFISCSFDVVFS----VSISGLLNLKELELED 156 (411)
Q Consensus 89 p~~i-~~l~~L~~L~L~~~~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp----~~l~~l~~L~~L~L~~ 156 (411)
...+ ..+++|+.|++++|.... -..+..+++|+.|+|.+|.+.. -+ ..+..+++|+.||-..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~------~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE------KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG------STTHHHHHHHH-TT-SEETTEE
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc------hhhHHHHHHHHcChhheeCCEE
Confidence 6655 357888888888776211 1236667777777777777665 33 2345666677666543
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.7e-10 Score=101.58 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=52.1
Q ss_pred ceeEEEEeCCCCCccccccc-CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhc-cCCCCCcEEEc
Q 045186 3 CLRELLLDGTDIKELPVSIE-LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIV-ASMEDLLELYL 80 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L~L 80 (411)
++++|+|++|.|+.+.. ++ .+.+|+.|+|++| .+..++ .+..++.|++|++++ +.++.+++.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEEC
Confidence 57899999999998754 65 5899999999994 788886 477899999999999 5677786655 46899999999
Q ss_pred cCCCCCccC--hhhhccCCCCEEecCCCCCC-----hhHHHhhccccceeecC
Q 045186 81 DGTSITEVP--SSIELLHGLELLNLNNCKNL-----WTTIIYIMAFARSFQFD 126 (411)
Q Consensus 81 ~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~-----~~~~l~~l~~L~~L~Ls 126 (411)
++|.|.++- ..+..+++|+.|++.+|.-. ....+..+|+|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999998543 45778999999999999822 22348999999999743
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=1.1e-11 Score=123.28 Aligned_cols=145 Identities=24% Similarity=0.324 Sum_probs=94.0
Q ss_pred eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT 83 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (411)
|+.|.|..|.|..+|..+.++..|++|||+. +.+..+|..++.|+ |+.|.+++ ++++.+|+.++.+..|..|+.+.|
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhh
Confidence 3444555566666666666777777777766 45666666665443 66666666 566777777766666777777777
Q ss_pred CCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 84 SITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 84 ~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
.+..+|+.++.+.+|+.|++..|... .+..+. .-.|..||++.|++.. ||.++.+++.|++|-|.+|+
T Consensus 177 ei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~------iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY------LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee------cchhhhhhhhheeeeeccCC
Confidence 77777777777777777776666521 222233 3346677777777777 77777777777777777665
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=8.7e-11 Score=117.60 Aligned_cols=153 Identities=33% Similarity=0.411 Sum_probs=136.1
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+|+.|++++|.+..+|..++++++|+.|++++ +.+..+|...+.+++|+.|++++ +.+..+|..++.+..|++|.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcC
Confidence 89999999999999987799999999999999 57888988777899999999999 67899998877778899999999
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCCh-hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNLW-TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ 161 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~ 161 (411)
|.+...+..+.++.++..|.+.+|.... ...++.+++|+.|++++|.++. ++. ++.+.+|+.|+++++....
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~------i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS------ISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred CcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc------ccc-ccccCccCEEeccCccccc
Confidence 9888888899999999999988887554 5779999999999999999999 886 8999999999999977554
Q ss_pred ccC
Q 045186 162 SLP 164 (411)
Q Consensus 162 ~lp 164 (411)
.+|
T Consensus 292 ~~~ 294 (394)
T COG4886 292 ALP 294 (394)
T ss_pred cch
Confidence 443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=2e-11 Score=121.50 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=135.9
Q ss_pred EEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCC
Q 045186 6 ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSI 85 (411)
Q Consensus 6 ~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i 85 (411)
..+|+.|.+.++|..+..+..|+.|.|.. +.+..+|..++++..|.+|+|+. +.+..+|..+..++ |+.|.+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecCcc
Confidence 46788888899998888888999999988 57888999999999999999999 67889999888876 89999999999
Q ss_pred CccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccC
Q 045186 86 TEVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLP 164 (411)
Q Consensus 86 ~~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp 164 (411)
+.+|..|+.+..|..|+.+.|. ...+..++.+.+|+.|.+..|++.. +|..+..| .|..||+++ +++..||
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~------lp~El~~L-pLi~lDfSc-Nkis~iP 227 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED------LPEELCSL-PLIRLDFSC-NKISYLP 227 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh------CCHHHhCC-ceeeeeccc-Cceeecc
Confidence 9999999999999999999998 3445569999999999999999999 99988855 599999986 5577777
Q ss_pred CCC---CCCceEEecC
Q 045186 165 QIP---PNLWLVRANG 177 (411)
Q Consensus 165 ~l~---~~L~~L~~~~ 177 (411)
--. ..|++|-+.+
T Consensus 228 v~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLEN 243 (722)
T ss_pred hhhhhhhhheeeeecc
Confidence 533 4455555543
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=9.6e-11 Score=108.57 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=61.9
Q ss_pred eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT 83 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (411)
|+.|+|++|.|+.+..++.-+++++.|+++.| .+..+.. +..|.+|..||||+ +.+.++-..-..+-++++|.|++|
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehhhh
Confidence 45555666655555555555555666666553 3333322 44555555555555 334444333334445555555555
Q ss_pred CCCccChhhhccCCCCEEecCCCCCChh---HHHhhccccceeecCCCCccc
Q 045186 84 SITEVPSSIELLHGLELLNLNNCKNLWT---TIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~---~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
.|..+ +.++++-+|..||+++|+.... ..+++++.|+.|.|.+|.+..
T Consensus 363 ~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 363 KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 55544 2344555555555555542211 114455555555555554444
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.95 E-value=8.3e-11 Score=112.55 Aligned_cols=104 Identities=28% Similarity=0.386 Sum_probs=77.9
Q ss_pred ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186 3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY 79 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~ 79 (411)
.-..|.|..|+|+.||+. |+.+++|+.|||++| .++. -|..+..+.+|..|-+.++++++.+|. .++++..|+.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 456789999999999865 999999999999995 5554 488899999999999999899999985 456676777776
Q ss_pred ccCCCCCccC-hhhhccCCCCEEecCCCC
Q 045186 80 LDGTSITEVP-SSIELLHGLELLNLNNCK 107 (411)
Q Consensus 80 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~ 107 (411)
+.-|++..++ ..+..+++|..|.+.+|.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchh
Confidence 6666666333 235555555555555443
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=8e-10 Score=119.79 Aligned_cols=105 Identities=30% Similarity=0.400 Sum_probs=79.1
Q ss_pred CceeEEEEeCCC--CCccccc-ccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 2 ECLRELLLDGTD--IKELPVS-IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~--l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
++|+.|-+.+|. +..++.. |..++.|++|||++|..+..+|+.|+.|-+|++|++++ +.+..+|..+++++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhhee
Confidence 457777777775 5566554 66788888888888888888888888888888888888 5677888888888888888
Q ss_pred EccCCCCC-ccChhhhccCCCCEEecCCCC
Q 045186 79 YLDGTSIT-EVPSSIELLHGLELLNLNNCK 107 (411)
Q Consensus 79 ~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~ 107 (411)
++..+... .+|..+..+.+|++|.+..-.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 88887655 334444458888888776543
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.89 E-value=5.3e-09 Score=103.03 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=28.6
Q ss_pred CCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC-CCCccC
Q 045186 24 LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT-SITEVP 89 (411)
Q Consensus 24 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~-~i~~lp 89 (411)
+.+++.|++++| .++.+|. -..+|+.|.+++|..+..+|..+ ..+|+.|++++| .+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 445555555554 4444441 11245555555555555555433 234555555554 444444
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=7.5e-10 Score=102.74 Aligned_cols=125 Identities=19% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecC
Q 045186 25 SGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLN 104 (411)
Q Consensus 25 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 104 (411)
+.|+.|||++ +.+..+..++.-++.++.|++|.| .+..+.. +..+.+|+.|||++|.++++-.+-.++-+++.|.|+
T Consensus 284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccc-cchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3455555555 344444444444555555555553 2322222 444555555555555555444444445555555555
Q ss_pred CCCCChhHHHhhccccceeecCCCCccccccccccc--hhhhcCCCCCEecccCcc
Q 045186 105 NCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS--VSISGLLNLKELELEDCK 158 (411)
Q Consensus 105 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--~~l~~l~~L~~L~L~~c~ 158 (411)
+|....-+.++.+-+|..||+++|++.. +. ..|++++.|+.|.|.+|+
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~------ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEE------LDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhh------HHHhcccccccHHHHHhhcCCC
Confidence 5554444445555566666666665555 33 245555666666555554
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=8.5e-09 Score=109.03 Aligned_cols=106 Identities=26% Similarity=0.280 Sum_probs=75.1
Q ss_pred CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCC-ccChhhhccCCCCEEecC
Q 045186 26 GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSIT-EVPSSIELLHGLELLNLN 104 (411)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~ 104 (411)
.++.|+|++|...+.+|..+..+++|+.|+|++|...+.+|..++.+++|+.|+|++|.++ .+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777776665677777777788888888876666677777777888888888888777 677777788888888887
Q ss_pred CCC--CChhHHHhh-ccccceeecCCCCcc
Q 045186 105 NCK--NLWTTIIYI-MAFARSFQFDGKEFI 131 (411)
Q Consensus 105 ~~~--~~~~~~l~~-l~~L~~L~Ls~n~~~ 131 (411)
+|. +..+..++. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 776 233333433 345667777777543
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=5.3e-09 Score=113.45 Aligned_cols=150 Identities=27% Similarity=0.323 Sum_probs=115.1
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCC-Ccccccc-cCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKN-LLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~-l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
..+.+.+-++.+..++.+.. .++|+.|-+..+.. +..++.. +..++.|+.|||++|..+..+|..++++-+|+.|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 35677788888877776544 34899999998653 5666554 667999999999999999999999999999999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED 156 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~ 156 (411)
++|.|+.+|.++++++.|.+|++..+.. ..+..+..+++|++|.+....... ....-..+.++.+|+.|....
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc---chhhHHhhhcccchhhheeec
Confidence 9999999999999999999999998873 234557779999999987764222 111223445566666655544
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.73 E-value=3.2e-08 Score=104.67 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=47.0
Q ss_pred CcEEEccCCCCC-ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCE
Q 045186 75 LLELYLDGTSIT-EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKE 151 (411)
Q Consensus 75 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~ 151 (411)
++.|+|++|.+. .+|..++.+++|+.|+|++|. +..+..++.+++|+.|+|++|++.+ .+|..++.+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-----~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-----SIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-----CCchHHhcCCCCCE
Confidence 445555555555 555555555555555555554 2333445555555666666555553 25555556666666
Q ss_pred ecccCcccccccCC
Q 045186 152 LELEDCKRLQSLPQ 165 (411)
Q Consensus 152 L~L~~c~~l~~lp~ 165 (411)
|+|++|.....+|.
T Consensus 495 L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 495 LNLNGNSLSGRVPA 508 (623)
T ss_pred EECcCCcccccCCh
Confidence 66665554444443
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.8e-10 Score=102.89 Aligned_cols=174 Identities=23% Similarity=0.242 Sum_probs=128.9
Q ss_pred ceeEEEEeCCCCC--cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc--hhccCCCCCcEE
Q 045186 3 CLRELLLDGTDIK--ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP--QIVASMEDLLEL 78 (411)
Q Consensus 3 ~L~~L~L~~~~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~~L 78 (411)
.|++|+|+...|+ .+..-+..+.+|+.|.|.+...-..+-..|.+-.+|+.|+|++|+.+++.. -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4788999998887 566668889999999999865444555667788899999999999887654 356789999999
Q ss_pred EccCCCCC--ccChhhhcc-CCCCEEecCCCCC-Ch----hHHHhhccccceeecCCCCccccccccccchhhhcCCCCC
Q 045186 79 YLDGTSIT--EVPSSIELL-HGLELLNLNNCKN-LW----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLK 150 (411)
Q Consensus 79 ~L~~~~i~--~lp~~i~~l-~~L~~L~L~~~~~-~~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~ 150 (411)
+|+.|.+. .+...+.+. ++|+.|+|+|+.. +. ......+++|..|||++|..... ..-..+.+++.|+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----hHHHHHHhcchhe
Confidence 99999765 333334443 6899999999972 22 22367889999999999865440 1334577899999
Q ss_pred EecccCcccccc--cCC--CCCCCceEEecCCCC
Q 045186 151 ELELEDCKRLQS--LPQ--IPPNLWLVRANGCSS 180 (411)
Q Consensus 151 ~L~L~~c~~l~~--lp~--l~~~L~~L~~~~c~~ 180 (411)
+|.++.|-.+.. +-+ -.|+|.+|++.+|-+
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 999999975421 001 137788899888854
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.72 E-value=9e-10 Score=105.58 Aligned_cols=171 Identities=19% Similarity=0.214 Sum_probs=119.0
Q ss_pred CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
+++|++|+|+.|+|+.| |.+|..+++|..|-+.+++.++.+|+. +.+|.+|+.|.+.-|..--...+.+..|++|..|
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 46899999999999977 677999999999999998899999864 5678888888777743333333556677777777
Q ss_pred EccCCCCCccCh-hhhccCCCCEEecCCCCCChh----------------------------------------------
Q 045186 79 YLDGTSITEVPS-SIELLHGLELLNLNNCKNLWT---------------------------------------------- 111 (411)
Q Consensus 79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~---------------------------------------------- 111 (411)
.+..|.+..++. ++..+.+++.+.+..|...-.
T Consensus 170 slyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e 249 (498)
T KOG4237|consen 170 SLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE 249 (498)
T ss_pred cccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence 777777776665 566666666666554441110
Q ss_pred ------------------HHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCcccccccCCC----CC
Q 045186 112 ------------------TIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCKRLQSLPQI----PP 168 (411)
Q Consensus 112 ------------------~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l----~~ 168 (411)
..|+.+++|++|+|++|.++. |- .++..+..++.|.|..|+ +..+..- -.
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~------i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR------IEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLS 322 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch------hhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccc
Confidence 227788888888888888877 64 567777788888887754 3333221 14
Q ss_pred CCceEEecCC
Q 045186 169 NLWLVRANGC 178 (411)
Q Consensus 169 ~L~~L~~~~c 178 (411)
.|+.|++++.
T Consensus 323 ~L~tL~L~~N 332 (498)
T KOG4237|consen 323 GLKTLSLYDN 332 (498)
T ss_pred cceeeeecCC
Confidence 4555666553
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.4e-09 Score=102.87 Aligned_cols=149 Identities=21% Similarity=0.316 Sum_probs=104.5
Q ss_pred CceeEEEEeCCCCCcccc--cccCCCCccEEEEecCCCCcc---cccccCCCCCccEEEeeCCCCCcccch--hccCCCC
Q 045186 2 ECLRELLLDGTDIKELPV--SIELLSGLVQLSLKGCKNLLS---LPIAISSLKCLRNLKLSGCSKLKKFPQ--IVASMED 74 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~--si~~l~~L~~L~L~~c~~l~~---lp~~i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~ 74 (411)
++|+++.|.++.+...+. -...|++++.|||+.| .+.. +-..+..|++|+.|+|+.| .+..+-+ .-..+.+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence 567888888887765552 4677889999999884 3332 2233457889999999884 3332221 1224678
Q ss_pred CcEEEccCCCCC--ccChhhhccCCCCEEecCCCCCCh--hHHHhhccccceeecCCCCccccccccccc--hhhhcCCC
Q 045186 75 LLELYLDGTSIT--EVPSSIELLHGLELLNLNNCKNLW--TTIIYIMAFARSFQFDGKEFISCSFDVVFS--VSISGLLN 148 (411)
Q Consensus 75 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~--~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--~~l~~l~~ 148 (411)
|+.|.|++|+++ ++-.....+++|+.|+|..|.... ......+..|+.|+|++|++.. .+ .-++.++.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~------~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID------FDQGYKVGTLPG 272 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc------cccccccccccc
Confidence 888999999888 454455667889999998885222 2225667788899999998887 66 45678888
Q ss_pred CCEecccCcc
Q 045186 149 LKELELEDCK 158 (411)
Q Consensus 149 L~~L~L~~c~ 158 (411)
|..|+++.|.
T Consensus 273 L~~Lnls~tg 282 (505)
T KOG3207|consen 273 LNQLNLSSTG 282 (505)
T ss_pred hhhhhccccC
Confidence 8888888754
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.1e-08 Score=97.44 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=108.4
Q ss_pred CCceeEEEEeCCCCCc---ccccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCC-cccchhccCCCCC
Q 045186 1 MECLRELLLDGTDIKE---LPVSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKL-KKFPQIVASMEDL 75 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~---lp~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L 75 (411)
+++++.|+|++|-+.. +-.-...|++|+.|+|+.|....-..+. -..+++|+.|.|++|... ..+...+..+++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 5789999999986653 3344678999999999996533222111 125778999999998754 2333445567889
Q ss_pred cEEEccCCC-CCccChhhhccCCCCEEecCCCCCChhH---HHhhccccceeecCCCCccccccccccchh-----hhcC
Q 045186 76 LELYLDGTS-ITEVPSSIELLHGLELLNLNNCKNLWTT---IIYIMAFARSFQFDGKEFISCSFDVVFSVS-----ISGL 146 (411)
Q Consensus 76 ~~L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~---~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-----l~~l 146 (411)
+.|+|.+|. +..--.+..-+..|+.|+|++|...... ..+.++.|+.|+++.+.+.+. .+|+. ...+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si----~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI----AEPDVESLDKTHTF 300 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh----cCCCccchhhhccc
Confidence 999999883 3322223445678899999998855443 378888999999988887761 12332 3567
Q ss_pred CCCCEecccCcccccccC
Q 045186 147 LNLKELELEDCKRLQSLP 164 (411)
Q Consensus 147 ~~L~~L~L~~c~~l~~lp 164 (411)
++|+.|++..|+ +.+++
T Consensus 301 ~kL~~L~i~~N~-I~~w~ 317 (505)
T KOG3207|consen 301 PKLEYLNISENN-IRDWR 317 (505)
T ss_pred ccceeeecccCc-ccccc
Confidence 899999998865 43333
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=3.3e-07 Score=90.53 Aligned_cols=151 Identities=24% Similarity=0.420 Sum_probs=96.6
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++++.|++++|.|+.+|. -..+|+.|.+++|..+..+|..+ ..+|+.|++++|..+..+|.. |+.|++.
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEeC
Confidence 578999999999999883 23479999999999999998755 368999999999888888854 6777777
Q ss_pred CCC---CCccChhhhccCCCCEEecCCCCCChhHHH--hhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186 82 GTS---ITEVPSSIELLHGLELLNLNNCKNLWTTII--YIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED 156 (411)
Q Consensus 82 ~~~---i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l--~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~ 156 (411)
++. +..+|. +|+.|.+.++.......+ .-.++|++|++++|.... +|..+. .+|+.|.++.
T Consensus 121 ~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~------LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 121 GSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII------LPEKLP--ESLQSITLHI 186 (426)
T ss_pred CCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCccc------Cccccc--ccCcEEEecc
Confidence 665 345664 455666654331111111 112567777777666554 443332 4666666655
Q ss_pred cc--ccc-ccCCCCCCCceEEecCC
Q 045186 157 CK--RLQ-SLPQIPPNLWLVRANGC 178 (411)
Q Consensus 157 c~--~l~-~lp~l~~~L~~L~~~~c 178 (411)
+. .+. ..+.+|+++ .|++.+|
T Consensus 187 n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 187 EQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cccccccCccccccccc-Eechhhh
Confidence 32 111 122345555 6666665
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1.7e-07 Score=88.87 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=124.6
Q ss_pred CceeEEEEeCCCCC-----cccccccCCCCccEEEEecCCCCc----cccc-------ccCCCCCccEEEeeCCCCCccc
Q 045186 2 ECLRELLLDGTDIK-----ELPVSIELLSGLVQLSLKGCKNLL----SLPI-------AISSLKCLRNLKLSGCSKLKKF 65 (411)
Q Consensus 2 ~~L~~L~L~~~~l~-----~lp~si~~l~~L~~L~L~~c~~l~----~lp~-------~i~~l~~L~~L~Ls~c~~l~~l 65 (411)
..+++|+|+||.+- .+-..+.+.++|+.-++++ -..+ .+|. .+...++|++|+||+|-.-...
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 46889999999875 3445577888999999886 2222 2333 3446779999999997544444
Q ss_pred c----hhccCCCCCcEEEccCCCCCccC--------------hhhhccCCCCEEecCCCCCCh------hHHHhhccccc
Q 045186 66 P----QIVASMEDLLELYLDGTSITEVP--------------SSIELLHGLELLNLNNCKNLW------TTIIYIMAFAR 121 (411)
Q Consensus 66 p----~~l~~l~~L~~L~L~~~~i~~lp--------------~~i~~l~~L~~L~L~~~~~~~------~~~l~~l~~L~ 121 (411)
+ +-+.++..|++|+|.+|++...- .-++.-+.|+++....|.-.. ...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 3 34567899999999999886322 123455789999998887221 23378889999
Q ss_pred eeecCCCCccccccccccchhhhcCCCCCEecccCccccc--------ccCCCCCCCceEEecCC
Q 045186 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ--------SLPQIPPNLWLVRANGC 178 (411)
Q Consensus 122 ~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~--------~lp~l~~~L~~L~~~~c 178 (411)
.+.+..|.+..- .+..+-..+.++++|+.|||.+|..-. .+|.+| .|++|++.+|
T Consensus 189 evr~~qN~I~~e-G~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~dc 251 (382)
T KOG1909|consen 189 EVRLSQNGIRPE-GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLGDC 251 (382)
T ss_pred eEEEecccccCc-hhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeeccccc
Confidence 999999987652 223455678899999999999987432 234444 7899999888
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3.4e-07 Score=66.19 Aligned_cols=58 Identities=38% Similarity=0.453 Sum_probs=42.2
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCC
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCS 60 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~ 60 (411)
|+|++|++++|.|+.+|. .|.++++|++|+|++| .+..+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 577888888888887774 4777888888888864 455554 456777888888887753
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=1.1e-07 Score=95.98 Aligned_cols=125 Identities=25% Similarity=0.298 Sum_probs=59.1
Q ss_pred eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT 83 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (411)
++.+++..+.|..+-..+..+++|+.|++.+ +.+..+...+..+++|++|+|++ +.++.+. .+..+..|+.|++.+|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheeccC
Confidence 3344444444444222244455555555555 34444433344455555555555 3344442 2334444555555555
Q ss_pred CCCccChhhhccCCCCEEecCCCCCChhHH--HhhccccceeecCCCCccc
Q 045186 84 SITEVPSSIELLHGLELLNLNNCKNLWTTI--IYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 84 ~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~--l~~l~~L~~L~Ls~n~~~~ 132 (411)
.|+.+. .+..+++|+.+++++|....-.. +..+.+|+.+.+.+|.+..
T Consensus 151 ~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 151 LISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 555443 23335555555555555333222 3555555555555554443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.1e-07 Score=88.49 Aligned_cols=148 Identities=21% Similarity=0.275 Sum_probs=112.2
Q ss_pred CceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCccc--ccccCCCCCccEEEeeCCCCCcccc----hhccCCCC
Q 045186 2 ECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSKLKKFP----QIVASMED 74 (411)
Q Consensus 2 ~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~Ls~c~~l~~lp----~~l~~l~~ 74 (411)
.+|+.|.|.|+.+. .+-..|+.-.+|+.|||+.|+.+++. .--+.+++.|..|+|++|-..+..- ..+ -++
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~ 287 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI--SET 287 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh--chh
Confidence 57889999999887 55566888899999999999988753 2235688999999999996554322 122 257
Q ss_pred CcEEEccCCCC----CccChhhhccCCCCEEecCCCCCChhHH---HhhccccceeecCCCCccccccccccchh---hh
Q 045186 75 LLELYLDGTSI----TEVPSSIELLHGLELLNLNNCKNLWTTI---IYIMAFARSFQFDGKEFISCSFDVVFSVS---IS 144 (411)
Q Consensus 75 L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L~~~~~~~~~~---l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~---l~ 144 (411)
|+.|+|+|+.- ..+..-..++++|..|||++|..+.++. +..++.|++|.++.|... +|.. +.
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-------~p~~~~~l~ 360 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-------IPETLLELN 360 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-------ChHHeeeec
Confidence 88999999832 2444445688999999999999766644 778999999999998542 3432 46
Q ss_pred cCCCCCEecccCcc
Q 045186 145 GLLNLKELELEDCK 158 (411)
Q Consensus 145 ~l~~L~~L~L~~c~ 158 (411)
..+.|.+|++-+|-
T Consensus 361 s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCV 374 (419)
T ss_pred cCcceEEEEecccc
Confidence 67899999999885
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=2.3e-07 Score=93.64 Aligned_cols=126 Identities=23% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEec
Q 045186 24 LSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNL 103 (411)
Q Consensus 24 l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 103 (411)
+..++.++++.+ .+..+-..+..+++|+.|++.+ +.+..+...+..+++|+.|++++|.|+.+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchh-hhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 444555555552 3333223345566666666666 345555444555666666666666666554 3455555666666
Q ss_pred CCCCCChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCcc
Q 045186 104 NNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCK 158 (411)
Q Consensus 104 ~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c~ 158 (411)
.+|.......+..+++|+.+++++|.+.. +... +..+.+|+.+.+.+|.
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~i~~------ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNRIVD------IENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcchhhh------hhhhhhhhccchHHHhccCCc
Confidence 66654444445556666666666666655 4432 3555666666665543
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=9.6e-08 Score=98.04 Aligned_cols=107 Identities=23% Similarity=0.167 Sum_probs=69.4
Q ss_pred cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecCCCCCChhHHHhhccccc
Q 045186 43 IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLNNCKNLWTTIIYIMAFAR 121 (411)
Q Consensus 43 ~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~ 121 (411)
.++.-++.|+.|||++ +++.+.. .+..++.|++|||+.|.++.+|.. ...+. |+.|.+++|.-..-..+.++.+|+
T Consensus 181 ~SLqll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccch-hhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhh
Confidence 3344456777777777 3455443 566777778888888777766642 22333 777777777655555577777888
Q ss_pred eeecCCCCccccccccccc--hhhhcCCCCCEecccCcc
Q 045186 122 SFQFDGKEFISCSFDVVFS--VSISGLLNLKELELEDCK 158 (411)
Q Consensus 122 ~L~Ls~n~~~~~~~~~~lp--~~l~~l~~L~~L~L~~c~ 158 (411)
.||+++|-+.+ .. ..+..|..|+.|.|.+|+
T Consensus 258 ~LDlsyNll~~------hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 258 GLDLSYNLLSE------HSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ccchhHhhhhc------chhhhHHHHHHHHHHHhhcCCc
Confidence 88888775554 22 134556677777777765
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.08 E-value=1.1e-07 Score=97.63 Aligned_cols=125 Identities=21% Similarity=0.209 Sum_probs=100.9
Q ss_pred eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT 83 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (411)
|...+.+.|.++.+..++.-++.|+.|||+.| .+.... .+..|+.|++|||+. +.+..+|..-..--.|+.|.+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeeccc
Confidence 55667788888888889999999999999995 455554 678899999999999 678888753222234999999999
Q ss_pred CCCccChhhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccc
Q 045186 84 SITEVPSSIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 84 ~i~~lp~~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
.++.+- .|.+|++|+.||++.|-.. .-..++.+..|+.|.|.||.+-.
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999775 7899999999999998622 23448889999999999998754
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=3.1e-06 Score=80.52 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=41.0
Q ss_pred CCCCCcEEEccCCCCCccCh-----hhhccCCCCEEecCCCCCChh------HHHhhccccceeecCCCCcccccccccc
Q 045186 71 SMEDLLELYLDGTSITEVPS-----SIELLHGLELLNLNNCKNLWT------TIIYIMAFARSFQFDGKEFISCSFDVVF 139 (411)
Q Consensus 71 ~l~~L~~L~L~~~~i~~lp~-----~i~~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~L~Ls~n~~~~~~~~~~l 139 (411)
+-+.|+++....|.+..-+. .+...+.|+.+.+..|..... ..+..+++|+.|||..|-|+. .....+
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-EGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-HHHHHH
Confidence 34455555555555543322 234445555555555542221 125555566666666655543 111112
Q ss_pred chhhhcCCCCCEecccCcc
Q 045186 140 SVSISGLLNLKELELEDCK 158 (411)
Q Consensus 140 p~~l~~l~~L~~L~L~~c~ 158 (411)
...+..+++|+.|++++|.
T Consensus 234 akaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHhcccchheeecccccc
Confidence 2334445555666665554
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=4e-06 Score=60.56 Aligned_cols=57 Identities=28% Similarity=0.406 Sum_probs=26.4
Q ss_pred CccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCC
Q 045186 26 GLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTS 84 (411)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~ 84 (411)
+|++|++++| .+..+|. .+..+++|++|++++| .+..+| ..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555553 4444442 3444555555555542 233333 234445555555555443
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.2e-05 Score=53.91 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=30.0
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP 42 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp 42 (411)
++|++|++++|+|+++|+.+++|++|+.|++++| .+.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 5788888888888888877888888888888885 566554
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6.1e-06 Score=87.77 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=37.9
Q ss_pred CCCccEEEeeCCCCC-cccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCCh---hHHHhhcccccee
Q 045186 48 LKCLRNLKLSGCSKL-KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLW---TTIIYIMAFARSF 123 (411)
Q Consensus 48 l~~L~~L~Ls~c~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~---~~~l~~l~~L~~L 123 (411)
||+|+.|.++|-... ..+-....++++|..||+++|+|+.+ .+|++|++|+.|.+.+-.-.. -..+-.|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 455555555552111 12222334455555555555555555 455555555555554433111 1124455555555
Q ss_pred ecCCCC
Q 045186 124 QFDGKE 129 (411)
Q Consensus 124 ~Ls~n~ 129 (411)
|+|...
T Consensus 226 DIS~~~ 231 (699)
T KOG3665|consen 226 DISRDK 231 (699)
T ss_pred eccccc
Confidence 555543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=2.8e-05 Score=52.15 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=19.0
Q ss_pred CccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCcc
Q 045186 50 CLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEV 88 (411)
Q Consensus 50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~l 88 (411)
+|++|++++| .++.+|..+++|++|+.|++++|.|+++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4555555552 3445555455555555555555555544
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.8e-05 Score=84.19 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=91.0
Q ss_pred CceeEEEEeCCCC-C-cccccccC-CCCccEEEEecCCCCc--ccccccCCCCCccEEEeeCCCCCcccchhccCCCCCc
Q 045186 2 ECLRELLLDGTDI-K-ELPVSIEL-LSGLVQLSLKGCKNLL--SLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLL 76 (411)
Q Consensus 2 ~~L~~L~L~~~~l-~-~lp~si~~-l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 76 (411)
.+|++|+++|... . .-|..++. ||+|+.|.+++ ..+. ++-.-..++++|..||+|+ ..+..+ .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHH
Confidence 3678888887532 2 23333443 68888888877 2221 2223345778888888888 456666 6788888888
Q ss_pred EEEccCCCCCccC--hhhhccCCCCEEecCCCCCChhH-H-------HhhccccceeecCCCCccccccccccchhhhcC
Q 045186 77 ELYLDGTSITEVP--SSIELLHGLELLNLNNCKNLWTT-I-------IYIMAFARSFQFDGKEFISCSFDVVFSVSISGL 146 (411)
Q Consensus 77 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~~-~-------l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l 146 (411)
.|.+.+=.+..-. ..+.+|++|+.||+|.-...... . -..+|.|+.||.|++.+... .+...+..-
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~----~le~ll~sH 274 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE----ILEELLNSH 274 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH----HHHHHHHhC
Confidence 8888776666322 35677888888888876632221 1 33478888888888766550 112223344
Q ss_pred CCCCEecccC
Q 045186 147 LNLKELELED 156 (411)
Q Consensus 147 ~~L~~L~L~~ 156 (411)
++|+.+.+-+
T Consensus 275 ~~L~~i~~~~ 284 (699)
T KOG3665|consen 275 PNLQQIAALD 284 (699)
T ss_pred ccHhhhhhhh
Confidence 5555555443
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.71 E-value=3.8e-05 Score=70.99 Aligned_cols=176 Identities=19% Similarity=0.176 Sum_probs=116.8
Q ss_pred CCceeEEEEeCCCCC-----cccccccCCCCccEEEEecCCCCc----ccc-------cccCCCCCccEEEeeCCCCCcc
Q 045186 1 MECLRELLLDGTDIK-----ELPVSIELLSGLVQLSLKGCKNLL----SLP-------IAISSLKCLRNLKLSGCSKLKK 64 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-----~lp~si~~l~~L~~L~L~~c~~l~----~lp-------~~i~~l~~L~~L~Ls~c~~l~~ 64 (411)
|..+..++|+||.|. .+...|.+-.+|++.+++. -..+ .+| ..+-+++.|+..+||+|..-..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 346788999999875 2444577788899888886 3332 122 2355789999999999776666
Q ss_pred cch----hccCCCCCcEEEccCCCCCccCh-----h---------hhccCCCCEEecCCCCCC------hhHHHhhcccc
Q 045186 65 FPQ----IVASMEDLLELYLDGTSITEVPS-----S---------IELLHGLELLNLNNCKNL------WTTIIYIMAFA 120 (411)
Q Consensus 65 lp~----~l~~l~~L~~L~L~~~~i~~lp~-----~---------i~~l~~L~~L~L~~~~~~------~~~~l~~l~~L 120 (411)
+|+ .+..-+.|++|.|.+|++..+.- . +..-+.|++.....|.-. ....+..-..|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 665 45567889999999998763321 1 223467888888877621 11225556789
Q ss_pred ceeecCCCCccccccccccchhhhcCCCCCEecccCccccc--------ccCCCCCCCceEEecCC
Q 045186 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ--------SLPQIPPNLWLVRANGC 178 (411)
Q Consensus 121 ~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~--------~lp~l~~~L~~L~~~~c 178 (411)
+.+.+..|.+..-.....+-..+..+.+|+.|||++|.... .+|.++ .|++|.+.+|
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDC 252 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDC 252 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccch
Confidence 99999999775410001112345678999999999986432 134443 3788888777
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=6.8e-06 Score=68.49 Aligned_cols=105 Identities=23% Similarity=0.277 Sum_probs=60.0
Q ss_pred CccEEEEecCCCCccccc---ccCCCCCccEEEeeCCCCCcccchhcc-CCCCCcEEEccCCCCCccChhhhccCCCCEE
Q 045186 26 GLVQLSLKGCKNLLSLPI---AISSLKCLRNLKLSGCSKLKKFPQIVA-SMEDLLELYLDGTSITEVPSSIELLHGLELL 101 (411)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~---~i~~l~~L~~L~Ls~c~~l~~lp~~l~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 101 (411)
.+..++|+.|. +..+++ .+.....|+..+|++ +.++++|+.+. ..+.++.|+|.+|.|.++|..+..++.|+.|
T Consensus 28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccch-hhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 34455666652 222222 233344555556666 45566665543 2335666666666666666666666677777
Q ss_pred ecCCCC-CChhHHHhhccccceeecCCCCccc
Q 045186 102 NLNNCK-NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 102 ~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+++.|. +..+..+-.+.+|-.|+..+|....
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 776666 3333344446677777777776666
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.46 E-value=1.6e-05 Score=66.24 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=84.3
Q ss_pred eeEEEEeCCCCCccccc---ccCCCCccEEEEecCCCCcccccccCC-CCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 4 LRELLLDGTDIKELPVS---IELLSGLVQLSLKGCKNLLSLPIAISS-LKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~s---i~~l~~L~~L~L~~c~~l~~lp~~i~~-l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
+..++|+.|.|-.+++. +.....|+..+|++ +.+.++|..+.. .+.++.|+|++ +.+..+|+.+..|+.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 45678888887766655 44556677779998 578888877654 45899999998 67899999999999999999
Q ss_pred ccCCCCCccChhhhccCCCCEEecCCCC
Q 045186 80 LDGTSITEVPSSIELLHGLELLNLNNCK 107 (411)
Q Consensus 80 L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 107 (411)
++.|.+...|.-|..|.+|..|+..+|.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCc
Confidence 9999999999988889999999988887
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.00012 Score=68.69 Aligned_cols=77 Identities=31% Similarity=0.370 Sum_probs=37.3
Q ss_pred ceeEEEEeCCCCC---cccccccCCCCccEEEEecCCCC---cccccccCCCCCccEEEeeCCCCC--cccchhccCCCC
Q 045186 3 CLRELLLDGTDIK---ELPVSIELLSGLVQLSLKGCKNL---LSLPIAISSLKCLRNLKLSGCSKL--KKFPQIVASMED 74 (411)
Q Consensus 3 ~L~~L~L~~~~l~---~lp~si~~l~~L~~L~L~~c~~l---~~lp~~i~~l~~L~~L~Ls~c~~l--~~lp~~l~~l~~ 74 (411)
.++.|+|.+|.|+ ++-.-+.+++.|++|||+.|..- .++| ..+.+|++|.|.| +.+ +.....+..++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhhhcchh
Confidence 3455666666555 23333556666666666653221 1222 1344666666655 222 122233444555
Q ss_pred CcEEEccCC
Q 045186 75 LLELYLDGT 83 (411)
Q Consensus 75 L~~L~L~~~ 83 (411)
++.|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555554
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00026 Score=62.87 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhc-cCCCCEEecCCCCCChh---HHHhhccccceee
Q 045186 49 KCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIEL-LHGLELLNLNNCKNLWT---TIIYIMAFARSFQ 124 (411)
Q Consensus 49 ~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~~~~~~~---~~l~~l~~L~~L~ 124 (411)
.+...+||++| .+..++ .+..++.|.+|.|..|.|+.+-..+.. +++|..|.+.+|....- ..+..++.|++|.
T Consensus 42 d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45667777774 344433 244567777777777777766665554 36677777777763222 1256677888888
Q ss_pred cCCCCccccccccccch----hhhcCCCCCEecccCc
Q 045186 125 FDGKEFISCSFDVVFSV----SISGLLNLKELELEDC 157 (411)
Q Consensus 125 Ls~n~~~~~~~~~~lp~----~l~~l~~L~~L~L~~c 157 (411)
+-+|.++. -.. -+..+++|+.||.++-
T Consensus 120 ll~Npv~~------k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEH------KKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhc------ccCceeEEEEecCcceEeehhhh
Confidence 88887766 331 3566788888888753
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.00021 Score=65.80 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=34.3
Q ss_pred CCCCcEEEccCC--CCC-ccChhhhccCCCCEEecCCCCCChhHH---HhhccccceeecCCCCccccccccccc----h
Q 045186 72 MEDLLELYLDGT--SIT-EVPSSIELLHGLELLNLNNCKNLWTTI---IYIMAFARSFQFDGKEFISCSFDVVFS----V 141 (411)
Q Consensus 72 l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~---l~~l~~L~~L~Ls~n~~~~~~~~~~lp----~ 141 (411)
|++|+.|.++.| ++. .++.....+++|++|++++|+...... +..+.+|..|++.+|..+. +- .
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~------l~dyre~ 137 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN------LDDYREK 137 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc------cccHHHH
Confidence 344444444444 333 333333334444444444444221111 3344445555555554433 21 1
Q ss_pred hhhcCCCCCEecccCc
Q 045186 142 SISGLLNLKELELEDC 157 (411)
Q Consensus 142 ~l~~l~~L~~L~L~~c 157 (411)
.+.-+++|+.|+-...
T Consensus 138 vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHhhhhcccccccc
Confidence 2334566666655543
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.14 E-value=2.2e-05 Score=76.48 Aligned_cols=179 Identities=21% Similarity=0.241 Sum_probs=105.6
Q ss_pred eeEEEEeCCCC---CcccccccCCCCccEEEEecCCCCccc--ccccCCCCCccEEEeeCCCCCcccc--hhccCCCCCc
Q 045186 4 LRELLLDGTDI---KELPVSIELLSGLVQLSLKGCKNLLSL--PIAISSLKCLRNLKLSGCSKLKKFP--QIVASMEDLL 76 (411)
Q Consensus 4 L~~L~L~~~~l---~~lp~si~~l~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L~ 76 (411)
|+.|.+.|+.= ..+-....+++++++|++.+|..+++- -..-..+++|++|+|..|..++... .....+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 67777777632 233333567788888888888776642 1112356788888888887776432 2234577888
Q ss_pred EEEccCCC-CC--ccChhhhccCCCCEEecCCCCCChhHHHhh----ccccceeecCCCCccccccccccchhhhcCCCC
Q 045186 77 ELYLDGTS-IT--EVPSSIELLHGLELLNLNNCKNLWTTIIYI----MAFARSFQFDGKEFISCSFDVVFSVSISGLLNL 149 (411)
Q Consensus 77 ~L~L~~~~-i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~----l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L 149 (411)
+|+++.+. |+ .+..-...+++|+.+.+.||.......+.. ..-+..+++..|+..++ ..+-..-..+..|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD---~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD---EDLWLIACGCHAL 296 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---hHHHHHhhhhhHh
Confidence 88888773 33 333344556667777777887665554332 33455555555543331 0011112446778
Q ss_pred CEecccCcccccccC-----CCCCCCceEEecCCCCCCccc
Q 045186 150 KELELEDCKRLQSLP-----QIPPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 150 ~~L~L~~c~~l~~lp-----~l~~~L~~L~~~~c~~L~~l~ 185 (411)
+.|+.++|..+.+.+ .-.++|+.|.+.+|+.+....
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 888888887765432 223677777777777644443
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.05 E-value=8.5e-05 Score=72.45 Aligned_cols=177 Identities=20% Similarity=0.251 Sum_probs=98.2
Q ss_pred CceeEEEEeCC-CCCcc--cccccCCCCccEEEEecCCCCcc--cccccCCCCCccEEEeeCCCCC--------------
Q 045186 2 ECLRELLLDGT-DIKEL--PVSIELLSGLVQLSLKGCKNLLS--LPIAISSLKCLRNLKLSGCSKL-------------- 62 (411)
Q Consensus 2 ~~L~~L~L~~~-~l~~l--p~si~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c~~l-------------- 62 (411)
++|+.|+|..| .|+.. -.-...+++|++|+++.|..+.. +-.-..+++.|+.+.+.||..+
T Consensus 190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~ 269 (483)
T KOG4341|consen 190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLE 269 (483)
T ss_pred chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChH
Confidence 56777888774 45422 22245678888888888876653 1112234445555555555433
Q ss_pred ------------cccc--hhccCCCCCcEEEccCCC-CCc--cChhhhccCCCCEEecCCCCCChhHH----Hhhccccc
Q 045186 63 ------------KKFP--QIVASMEDLLELYLDGTS-ITE--VPSSIELLHGLELLNLNNCKNLWTTI----IYIMAFAR 121 (411)
Q Consensus 63 ------------~~lp--~~l~~l~~L~~L~L~~~~-i~~--lp~~i~~l~~L~~L~L~~~~~~~~~~----l~~l~~L~ 121 (411)
+... ..-..+..|+.|+.+++. ++. +.+-..+..+|+.|-+++|+...... -.+.+.|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 2111 111224556666666543 221 12223456778888888887544433 23456788
Q ss_pred eeecCCCCccccccccccchhhhcCCCCCEecccCccccccc-----CC---CCCCCceEEecCCCCC
Q 045186 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSL-----PQ---IPPNLWLVRANGCSSL 181 (411)
Q Consensus 122 ~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~l-----p~---l~~~L~~L~~~~c~~L 181 (411)
.+++.++.... ++.+-.--.+++.|+.|.|++|..+++. .. -...+..+.+++|+.+
T Consensus 350 ~l~~e~~~~~~---d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 350 RLDLEECGLIT---DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhcccccceeh---hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 88777765443 1112222356788888888888776654 11 1245666777777544
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.001 Score=59.23 Aligned_cols=119 Identities=22% Similarity=0.298 Sum_probs=80.8
Q ss_pred EEEEeCCCCCccccccc-CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccC-CCCCcEEEccCC
Q 045186 6 ELLLDGTDIKELPVSIE-LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS-MEDLLELYLDGT 83 (411)
Q Consensus 6 ~L~L~~~~l~~lp~si~-~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~-l~~L~~L~L~~~ 83 (411)
.++|.+..+..+-. ++ -+.+...+||++| .+..++. +..++.|.+|.|++ +.+..+-+.++. +++|+.|.|.+|
T Consensus 23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccchhh-ccccccccceeccccc-chhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCc
Confidence 45555554432222 12 2356778889884 5565543 66788999999988 556666655554 567999999999
Q ss_pred CCCccCh--hhhccCCCCEEecCCCCCChhH-----HHhhccccceeecCCC
Q 045186 84 SITEVPS--SIELLHGLELLNLNNCKNLWTT-----IIYIMAFARSFQFDGK 128 (411)
Q Consensus 84 ~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~-----~l~~l~~L~~L~Ls~n 128 (411)
+|.++-. .+..++.|+.|.+-+|...... .+..+++|+.||..+-
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8885532 4667889999998888733222 2788899999998764
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.93 E-value=0.00022 Score=72.76 Aligned_cols=161 Identities=26% Similarity=0.338 Sum_probs=93.0
Q ss_pred cCCCCccEEEEecCCCCcc--cccccCCCCCccEEEeeCC-CCCcccc----hhccCCCCCcEEEccCCC-CCcc-Chhh
Q 045186 22 ELLSGLVQLSLKGCKNLLS--LPIAISSLKCLRNLKLSGC-SKLKKFP----QIVASMEDLLELYLDGTS-ITEV-PSSI 92 (411)
Q Consensus 22 ~~l~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~Ls~c-~~l~~lp----~~l~~l~~L~~L~L~~~~-i~~l-p~~i 92 (411)
..++.|+.|.+.+|..+.. +-.....++.|+.|++++| ......+ .....+.+|+.|+++++. +++. -..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3467788888888777765 3344557788888888873 3332222 223345778888888876 5522 1222
Q ss_pred -hccCCCCEEecCCCCCChhHH----HhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc---ccccccC
Q 045186 93 -ELLHGLELLNLNNCKNLWTTI----IYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC---KRLQSLP 164 (411)
Q Consensus 93 -~~l~~L~~L~L~~~~~~~~~~----l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c---~~l~~lp 164 (411)
..+++|+.|.+.+|..+.+.. ...+++|++|+|+++...++ ..+.....++++|+.|.+..+ ..++.+.
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~ 341 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---SGLEALLKNCPNLRELKLLSLNGCPSLTDLS 341 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---HHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence 237788888877777544332 55677788888887755431 113333444666555554433 3333321
Q ss_pred -----CCC-CCCceEEecCCCCCCccc
Q 045186 165 -----QIP-PNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 165 -----~l~-~~L~~L~~~~c~~L~~l~ 185 (411)
... ..+..+.+.+|+.++.+.
T Consensus 342 l~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 342 LSGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred HHHhhccCchhHhHHHHhcCCCcchhh
Confidence 122 255666666666666554
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.64 E-value=0.00067 Score=69.16 Aligned_cols=126 Identities=25% Similarity=0.342 Sum_probs=84.8
Q ss_pred CceeEEEEeCC-CCCc--ccccccCCCCccEEEEecC-CCCcccc----cccCCCCCccEEEeeCCCCCcccc-hhc-cC
Q 045186 2 ECLRELLLDGT-DIKE--LPVSIELLSGLVQLSLKGC-KNLLSLP----IAISSLKCLRNLKLSGCSKLKKFP-QIV-AS 71 (411)
Q Consensus 2 ~~L~~L~L~~~-~l~~--lp~si~~l~~L~~L~L~~c-~~l~~lp----~~i~~l~~L~~L~Ls~c~~l~~lp-~~l-~~ 71 (411)
++|+.|.+.++ .+.. +-.....++.|+.|++++| ......+ .....+.+|+.|++++|..+...- ..+ ..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 56777888776 4544 4455778899999999983 3333222 223456899999999987554321 222 23
Q ss_pred CCCCcEEEccCCC-CC--ccChhhhccCCCCEEecCCCCCChhHH----HhhccccceeecCC
Q 045186 72 MEDLLELYLDGTS-IT--EVPSSIELLHGLELLNLNNCKNLWTTI----IYIMAFARSFQFDG 127 (411)
Q Consensus 72 l~~L~~L~L~~~~-i~--~lp~~i~~l~~L~~L~L~~~~~~~~~~----l~~l~~L~~L~Ls~ 127 (411)
+++|+.|.+.++. ++ .+-.....+++|+.|++++|....... ..++++|+.|.+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 7899999988876 66 454556678999999999998764432 45577777765444
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00015 Score=67.33 Aligned_cols=96 Identities=21% Similarity=0.322 Sum_probs=51.9
Q ss_pred CCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccCh--hhhccCCCCEEe
Q 045186 25 SGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPS--SIELLHGLELLN 102 (411)
Q Consensus 25 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~ 102 (411)
.+.+.||+.+| .+..+. .+.+|+.|+.|.||- +++..+.. +..+++|++|+|..|.|..+-. -+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCC-CccHHH-HHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34445555554 333332 233556666666665 34444422 4455666666666666654432 355666777777
Q ss_pred cCCCC-------CChhHHHhhccccceee
Q 045186 103 LNNCK-------NLWTTIIYIMAFARSFQ 124 (411)
Q Consensus 103 L~~~~-------~~~~~~l~~l~~L~~L~ 124 (411)
|..|. +.....+..|++|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 76665 11123377778888776
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.00094 Score=62.77 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCCccEEEeeCCCCCc---ccchhccCCCCCcEEEccCCCCCccChhh-hccCCCCEEecCCCCCC---hhHHHhhccc
Q 045186 47 SLKCLRNLKLSGCSKLK---KFPQIVASMEDLLELYLDGTSITEVPSSI-ELLHGLELLNLNNCKNL---WTTIIYIMAF 119 (411)
Q Consensus 47 ~l~~L~~L~Ls~c~~l~---~lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~---~~~~l~~l~~ 119 (411)
..+.++.|||.+| .+. .+..++.+|+.|++|+|+.|.+...-.+. .-+.+|++|-|.|..-. ..+.+..++.
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3566788888884 333 44455677888888888888765222222 24467777777766522 2344677778
Q ss_pred cceeecCCCCcc
Q 045186 120 ARSFQFDGKEFI 131 (411)
Q Consensus 120 L~~L~Ls~n~~~ 131 (411)
++.|.++.|++.
T Consensus 148 vtelHmS~N~~r 159 (418)
T KOG2982|consen 148 VTELHMSDNSLR 159 (418)
T ss_pred hhhhhhccchhh
Confidence 888888877443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0029 Score=58.41 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=62.1
Q ss_pred CCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCCh----hHHHhhccccceeecCCCCccccccccccchhhhcCC
Q 045186 72 MEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLW----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLL 147 (411)
Q Consensus 72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~ 147 (411)
...|+.|.+.+..++.+. .+-.|++|+.|.++.|.... ......+++|++|++++|.+.. ...++ .+..+.
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~-pl~~l~ 116 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLR-PLKELE 116 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccc-hhhhhc
Confidence 445555555555444221 23367889999999884211 1225556999999999998764 11122 467788
Q ss_pred CCCEecccCcccccc------cCCCCCCCceEEecCCC
Q 045186 148 NLKELELEDCKRLQS------LPQIPPNLWLVRANGCS 179 (411)
Q Consensus 148 ~L~~L~L~~c~~l~~------lp~l~~~L~~L~~~~c~ 179 (411)
+|..|++.+|.-.+- +-.+.++|++|+-..+.
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 888999988874441 11234566666655443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.00078 Score=62.74 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=38.3
Q ss_pred CcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccc--hhhhcCCCCCEe
Q 045186 75 LLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS--VSISGLLNLKEL 152 (411)
Q Consensus 75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp--~~l~~l~~L~~L 152 (411)
.+.|+..||++.++. .+.+++.|+.|.|+-|+...-..+..++.|++|+|..|.|.+ +. ..+.++++|+.|
T Consensus 21 vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s------ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES------LDELEYLKNLPSLRTL 93 (388)
T ss_pred hhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc------HHHHHHHhcCchhhhH
Confidence 344444444444331 233444455555554444434445555566666666665555 43 234555666666
Q ss_pred cccCcc
Q 045186 153 ELEDCK 158 (411)
Q Consensus 153 ~L~~c~ 158 (411)
-|..|+
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 665554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0032 Score=35.39 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=13.2
Q ss_pred ceeEEEEeCCCCCcccccccC
Q 045186 3 CLRELLLDGTDIKELPVSIEL 23 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~ 23 (411)
+|++|+|++|.|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466666666666666665544
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.87 E-value=0.014 Score=54.38 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=102.7
Q ss_pred CceeEEEEeCC--C-CC-ccc-------ccccCCCCccEEEEecCCCCccccc----ccCCCCCccEEEeeCCCCCcccc
Q 045186 2 ECLRELLLDGT--D-IK-ELP-------VSIELLSGLVQLSLKGCKNLLSLPI----AISSLKCLRNLKLSGCSKLKKFP 66 (411)
Q Consensus 2 ~~L~~L~L~~~--~-l~-~lp-------~si~~l~~L~~L~L~~c~~l~~lp~----~i~~l~~L~~L~Ls~c~~l~~lp 66 (411)
++|+..+++.- + .+ +++ +.+..|++|+..+|+.|..-...|. -|..-+.|++|.+++| .++.+.
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~a 136 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIA 136 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccc
Confidence 35666666652 2 12 333 3467889999999999765444443 3556788999999985 444332
Q ss_pred h--------------hccCCCCCcEEEccCCCCCccChh-----hhccCCCCEEecCCCCCChhH-------HHhhcccc
Q 045186 67 Q--------------IVASMEDLLELYLDGTSITEVPSS-----IELLHGLELLNLNNCKNLWTT-------IIYIMAFA 120 (411)
Q Consensus 67 ~--------------~l~~l~~L~~L~L~~~~i~~lp~~-----i~~l~~L~~L~L~~~~~~~~~-------~l~~l~~L 120 (411)
. ...+-+.|+..+...|.+...|.. +..=.+|+.+.+..|...... .+..+.+|
T Consensus 137 G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~L 216 (388)
T COG5238 137 GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSL 216 (388)
T ss_pred hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcc
Confidence 1 123457899999999988866643 222368999999888743331 15678999
Q ss_pred ceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 121 ~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
+.|+|..|-|+. .....+...+...+.|+.|.+.+|-
T Consensus 217 evLDlqDNtft~-~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 217 EVLDLQDNTFTL-EGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eeeeccccchhh-hhHHHHHHHhcccchhhhccccchh
Confidence 999999998876 1111122334556778999999985
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.77 E-value=0.014 Score=32.65 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=15.7
Q ss_pred ccceeecCCCCccccccccccchhhhc
Q 045186 119 FARSFQFDGKEFISCSFDVVFSVSISG 145 (411)
Q Consensus 119 ~L~~L~Ls~n~~~~~~~~~~lp~~l~~ 145 (411)
+|++|+|++|+++. +|.++++
T Consensus 1 ~L~~Ldls~n~l~~------ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS------IPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESE------EGTTTTT
T ss_pred CccEEECCCCcCEe------CChhhcC
Confidence 47788888888887 8876544
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.68 E-value=0.11 Score=42.71 Aligned_cols=79 Identities=10% Similarity=0.205 Sum_probs=31.3
Q ss_pred ccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccChh-hhccCC
Q 045186 21 IELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPSS-IELLHG 97 (411)
Q Consensus 21 i~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 97 (411)
|.++++|+.+.+.. .+..++. .+..+.+|+.+.+.+ + +..++. .+.++++|+.+.+.. .+..++.. +..+++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 55556666666653 3444433 244455666666655 2 444443 334444566666643 33333322 333455
Q ss_pred CCEEecC
Q 045186 98 LELLNLN 104 (411)
Q Consensus 98 L~~L~L~ 104 (411)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 5555543
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.40 E-value=0.14 Score=42.06 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=55.7
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L 78 (411)
++|+.+.+.. .++.++. +|.++++|+.+.+.+ .+..++. .+..+++|+.+.+.+ .+..++. .+..+++|+.+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEE
T ss_pred CCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccccccccc
Confidence 4788888875 5777754 488888999999987 3666654 355677899999965 4555554 45668999999
Q ss_pred EccCCCCCccChh-hhccCCCCEEecCC
Q 045186 79 YLDGTSITEVPSS-IELLHGLELLNLNN 105 (411)
Q Consensus 79 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 105 (411)
.+..+ +..++.. +.++ +|+.+.+.+
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 99765 6655543 4444 777776654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.78 E-value=0.037 Score=28.93 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=7.6
Q ss_pred CceeEEEEeCCCCCccc
Q 045186 2 ECLRELLLDGTDIKELP 18 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp 18 (411)
++|+.|+|++|.|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666666666665554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=0.025 Score=50.55 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCcEEEccCCCCC-ccChhhhccCCCCEEecCCCCCChhHHHh----hccccceeecCCCC-ccccccccccchhhhcC
Q 045186 73 EDLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNLWTTIIY----IMAFARSFQFDGKE-FISCSFDVVFSVSISGL 146 (411)
Q Consensus 73 ~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~l~----~l~~L~~L~Ls~n~-~~~~~~~~~lp~~l~~l 146 (411)
..++.++.+++.|. +--..+..+++++.|.+.+|+...+..+. ..++|+.|+|++|. |++ . =-.++..+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~----~-GL~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD----G-GLACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech----h-HHHHHHHh
Confidence 34677888888776 44456777788888888888866654433 34678888888774 333 1 12356777
Q ss_pred CCCCEecccCcc
Q 045186 147 LNLKELELEDCK 158 (411)
Q Consensus 147 ~~L~~L~L~~c~ 158 (411)
++|+.|.|.+-+
T Consensus 176 knLr~L~l~~l~ 187 (221)
T KOG3864|consen 176 KNLRRLHLYDLP 187 (221)
T ss_pred hhhHHHHhcCch
Confidence 788887777643
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.76 E-value=0.077 Score=27.69 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=5.9
Q ss_pred CCcEEEccCCCCCccC
Q 045186 74 DLLELYLDGTSITEVP 89 (411)
Q Consensus 74 ~L~~L~L~~~~i~~lp 89 (411)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555544443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.085 Score=47.20 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=45.2
Q ss_pred CccEEEeeCCCCCcccchhccCCCCCcEEEccCCCC-C-ccChhhh-ccCCCCEEecCCCCCChhHH---Hhhcccccee
Q 045186 50 CLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSI-T-EVPSSIE-LLHGLELLNLNNCKNLWTTI---IYIMAFARSF 123 (411)
Q Consensus 50 ~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i-~-~lp~~i~-~l~~L~~L~L~~~~~~~~~~---l~~l~~L~~L 123 (411)
.++.++-+++.....--+.+.+++.|+.|.+.+|.- . .--..++ -.++|+.|+|++|..+++.. +..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666443333334455566666666665532 1 1111122 23678888888888776654 6677777777
Q ss_pred ecCCC
Q 045186 124 QFDGK 128 (411)
Q Consensus 124 ~Ls~n 128 (411)
.|.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 76653
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.57 E-value=0.21 Score=28.94 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=14.8
Q ss_pred CCceeEEEEeCCCCCccccc
Q 045186 1 MECLRELLLDGTDIKELPVS 20 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s 20 (411)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46777888888877777764
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.57 E-value=0.21 Score=28.94 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=14.8
Q ss_pred CCceeEEEEeCCCCCccccc
Q 045186 1 MECLRELLLDGTDIKELPVS 20 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s 20 (411)
|++|++|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46777888888877777764
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.43 E-value=0.34 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=16.2
Q ss_pred CCCCcEEEccCCCCCccChhh
Q 045186 72 MEDLLELYLDGTSITEVPSSI 92 (411)
Q Consensus 72 l~~L~~L~L~~~~i~~lp~~i 92 (411)
+++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.43 E-value=0.34 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=16.2
Q ss_pred CCCCcEEEccCCCCCccChhh
Q 045186 72 MEDLLELYLDGTSITEVPSSI 92 (411)
Q Consensus 72 l~~L~~L~L~~~~i~~lp~~i 92 (411)
+++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.34 E-value=0.013 Score=59.98 Aligned_cols=156 Identities=22% Similarity=0.219 Sum_probs=92.5
Q ss_pred eeEEEEeCCCCCc-----ccccccCCCCccEEEEecCCCCcc----cccccCCC-CCccEEEeeCCCCCc----ccchhc
Q 045186 4 LRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCKNLLS----LPIAISSL-KCLRNLKLSGCSKLK----KFPQIV 69 (411)
Q Consensus 4 L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~~l~~----lp~~i~~l-~~L~~L~Ls~c~~l~----~lp~~l 69 (411)
+..|.|.+|.+.. +-..+.....|..|++++|+.... +-..+... ..|++|.+..|.... .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5566777776652 334466778888888888643311 11112222 467777777765432 344566
Q ss_pred cCCCCCcEEEccCCCCC-----ccChhhh----ccCCCCEEecCCCCCChhH------HHhhccc-cceeecCCCCcccc
Q 045186 70 ASMEDLLELYLDGTSIT-----EVPSSIE----LLHGLELLNLNNCKNLWTT------IIYIMAF-ARSFQFDGKEFISC 133 (411)
Q Consensus 70 ~~l~~L~~L~L~~~~i~-----~lp~~i~----~l~~L~~L~L~~~~~~~~~------~l~~l~~-L~~L~Ls~n~~~~~ 133 (411)
.....|+.++++.|.+. .++..+. ...++++|+++.|...... .+...++ +..|++..|.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d- 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD- 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch-
Confidence 66777888888888663 2233333 3667888888888744332 2555555 6668888876654
Q ss_pred ccccccchhhhcC-CCCCEecccCcccc
Q 045186 134 SFDVVFSVSISGL-LNLKELELEDCKRL 160 (411)
Q Consensus 134 ~~~~~lp~~l~~l-~~L~~L~L~~c~~l 160 (411)
.....+...+..+ ..++.++++.|...
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 1122233445555 66778888877643
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.48 E-value=0.012 Score=53.62 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=50.1
Q ss_pred ccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCE
Q 045186 21 IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLEL 100 (411)
Q Consensus 21 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 100 (411)
+......+.||++.+ .+..+-..+..++.|..|+++. +.+..+|+..+.+..+..+++..|..+..|.+.+.++.++.
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 455556666666663 4444444455556666666665 44556666666666666666666666666666666666665
Q ss_pred EecCCCC
Q 045186 101 LNLNNCK 107 (411)
Q Consensus 101 L~L~~~~ 107 (411)
+++.++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 5555544
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.42 E-value=0.091 Score=48.12 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=44.8
Q ss_pred CCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecC
Q 045186 47 SLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFD 126 (411)
Q Consensus 47 ~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls 126 (411)
.....+.||++. +.+..+-..+.-++.|..|+++.|.|..+|..++. +..+..+++.
T Consensus 40 ~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q----------------------~~e~~~~~~~ 96 (326)
T KOG0473|consen 40 SFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQ----------------------QRETVNAASH 96 (326)
T ss_pred ccceeeeehhhh-hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHH----------------------HHHHHHHHhh
Confidence 344455555555 22333333333344445555555555555544444 4444555555
Q ss_pred CCCccccccccccchhhhcCCCCCEecccCccc
Q 045186 127 GKEFISCSFDVVFSVSISGLLNLKELELEDCKR 159 (411)
Q Consensus 127 ~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~ 159 (411)
.|+.+. .|.+.+.+++++.+++.++..
T Consensus 97 ~n~~~~------~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 97 KNNHSQ------QPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred ccchhh------CCccccccCCcchhhhccCcc
Confidence 566666 777777777777777766553
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=79.05 E-value=0.063 Score=55.11 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=8.0
Q ss_pred hhccCCCCEEecCCCC
Q 045186 92 IELLHGLELLNLNNCK 107 (411)
Q Consensus 92 i~~l~~L~~L~L~~~~ 107 (411)
+.....|+.++++.|.
T Consensus 168 L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNG 183 (478)
T ss_pred HhcccchhHHHHHhcc
Confidence 3344455555555554
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.29 E-value=3.7 Score=23.63 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=12.1
Q ss_pred CCCCEEecCCCCCChhHHH
Q 045186 96 HGLELLNLNNCKNLWTTII 114 (411)
Q Consensus 96 ~~L~~L~L~~~~~~~~~~l 114 (411)
++|+.|+|++|..+.+..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl 20 (26)
T smart00367 2 PNLRELDLSGCTNITDEGL 20 (26)
T ss_pred CCCCEeCCCCCCCcCHHHH
Confidence 5677777777766555443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.43 E-value=3.9 Score=23.91 Aligned_cols=15 Identities=7% Similarity=0.202 Sum_probs=10.6
Q ss_pred cccceeecCCCCccc
Q 045186 118 AFARSFQFDGKEFIS 132 (411)
Q Consensus 118 ~~L~~L~Ls~n~~~~ 132 (411)
++|+.|++++|++++
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 456777777777777
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.28 E-value=4.4 Score=23.66 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=10.4
Q ss_pred CCceeEEEEeCCCCCcc
Q 045186 1 MECLRELLLDGTDIKEL 17 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l 17 (411)
+++|+.|+|+.|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35666677766666543
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.93 E-value=3.8 Score=22.99 Aligned_cols=15 Identities=0% Similarity=0.160 Sum_probs=8.2
Q ss_pred cccceeecCCCCccc
Q 045186 118 AFARSFQFDGKEFIS 132 (411)
Q Consensus 118 ~~L~~L~Ls~n~~~~ 132 (411)
++|++|+|++|.+..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 466667777766554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.70 E-value=5.6 Score=41.03 Aligned_cols=17 Identities=24% Similarity=0.808 Sum_probs=13.4
Q ss_pred CCCCCceeeEEeEEEEe
Q 045186 235 FYNMNKVVGYAICCVFH 251 (411)
Q Consensus 235 ~~~~~~~~g~~~c~v~~ 251 (411)
|+...+.+||++--|+.
T Consensus 440 ~~~~~~~l~ftv~G~f~ 456 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFR 456 (585)
T ss_pred eecccceEEEEEEEEee
Confidence 66577788888888876
No 90
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=51.32 E-value=3.2 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCC
Q 045186 398 YDEKPQPKRFRPL 410 (411)
Q Consensus 398 ~~~~~~~k~~~~~ 410 (411)
+.+|||..|.|+|
T Consensus 10 ~~~ePH~~RRk~I 22 (39)
T PF08557_consen 10 YTDEPHASRRKEI 22 (39)
T ss_pred CCCCccHHHHHHH
Confidence 5599999999986
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.58 E-value=17 Score=21.36 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=10.4
Q ss_pred cccceeecCCCCccc
Q 045186 118 AFARSFQFDGKEFIS 132 (411)
Q Consensus 118 ~~L~~L~Ls~n~~~~ 132 (411)
++|++|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777888777643
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.04 E-value=59 Score=33.86 Aligned_cols=61 Identities=13% Similarity=0.219 Sum_probs=26.6
Q ss_pred CCCCcEEEccCCCCCcc---ChhhhccCCCCEEecCCCCCC--hhHHHhhc--cccceeecCCCCccc
Q 045186 72 MEDLLELYLDGTSITEV---PSSIELLHGLELLNLNNCKNL--WTTIIYIM--AFARSFQFDGKEFIS 132 (411)
Q Consensus 72 l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~~--~~~~l~~l--~~L~~L~Ls~n~~~~ 132 (411)
.+.+..+.|++|.+..+ .+--...++|..|+|++|... ....+.++ .-|++|-+.||.+.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34455555555544422 112223355666666665211 11112222 235555555555433
Done!