Query 045186
Match_columns 411
No_of_seqs 511 out of 2605
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 18:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 193.9 15.6 218 2-236 81-313 (328)
2 4fcg_A Uncharacterized protein 99.9 2.3E-21 7.7E-26 187.9 17.5 180 1-186 103-295 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 5.3E-19 1.8E-23 170.0 14.7 215 2-229 50-275 (313)
4 1ogq_A PGIP-2, polygalacturona 99.8 9.4E-19 3.2E-23 168.2 12.4 179 1-185 75-261 (313)
5 2xwt_C Thyrotropin receptor; s 99.8 2E-18 6.9E-23 159.1 13.0 176 2-185 31-221 (239)
6 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.3E-23 163.1 13.1 170 2-178 32-211 (285)
7 4ezg_A Putative uncharacterize 99.8 5.3E-18 1.8E-22 151.8 13.7 147 2-158 44-192 (197)
8 1ozn_A Reticulon 4 receptor; N 99.8 9.6E-18 3.3E-22 158.5 15.8 165 5-179 14-188 (285)
9 2z66_A Variable lymphocyte rec 99.7 2.7E-18 9.2E-23 164.0 10.7 171 1-180 51-235 (306)
10 4eco_A Uncharacterized protein 99.7 3.3E-18 1.1E-22 180.1 11.1 175 1-183 205-417 (636)
11 1h6u_A Internalin H; cell adhe 99.7 2.1E-17 7.2E-22 158.5 15.6 169 2-185 41-211 (308)
12 3rgz_A Protein brassinosteroid 99.7 6.5E-18 2.2E-22 181.5 13.4 203 1-210 441-721 (768)
13 1h6u_A Internalin H; cell adhe 99.7 2.2E-17 7.5E-22 158.3 15.0 143 2-157 63-205 (308)
14 2o6q_A Variable lymphocyte rec 99.7 4.4E-17 1.5E-21 153.0 16.6 164 4-178 18-191 (270)
15 2z62_A TOLL-like receptor 4, v 99.7 1.8E-17 6E-22 156.0 13.8 176 2-186 28-217 (276)
16 4ecn_A Leucine-rich repeat pro 99.7 5.9E-18 2E-22 183.1 11.9 177 1-184 447-660 (876)
17 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 9E-22 156.5 14.9 163 2-178 46-210 (291)
18 3rgz_A Protein brassinosteroid 99.7 3E-17 1E-21 176.4 16.7 227 1-234 417-723 (768)
19 3rfs_A Internalin B, repeat mo 99.7 4.4E-17 1.5E-21 153.2 15.6 170 1-181 40-218 (272)
20 3rfs_A Internalin B, repeat mo 99.7 4.1E-17 1.4E-21 153.4 14.7 152 1-160 62-218 (272)
21 4eco_A Uncharacterized protein 99.7 1.4E-17 4.9E-22 175.2 12.7 162 15-186 196-394 (636)
22 1p9a_G Platelet glycoprotein I 99.7 5.5E-17 1.9E-21 154.3 15.5 173 1-185 9-188 (290)
23 2xwt_C Thyrotropin receptor; s 99.7 4.2E-17 1.4E-21 150.2 13.3 171 1-181 54-239 (239)
24 3zyj_A Leucine-rich repeat-con 99.7 6E-17 2E-21 162.8 15.3 175 1-185 87-271 (440)
25 3m19_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 148.9 15.4 168 3-179 15-190 (251)
26 4fmz_A Internalin; leucine ric 99.7 9.7E-17 3.3E-21 155.6 15.9 165 1-178 87-253 (347)
27 3zyi_A Leucine-rich repeat-con 99.7 9.2E-17 3.2E-21 162.0 16.2 176 1-185 98-282 (452)
28 2z66_A Variable lymphocyte rec 99.7 9.1E-18 3.1E-22 160.3 8.4 171 2-179 28-210 (306)
29 3vq2_A TLR4, TOLL-like recepto 99.7 1.4E-17 4.7E-22 173.7 10.2 179 1-186 349-538 (606)
30 1wwl_A Monocyte differentiatio 99.7 2.4E-17 8.2E-22 158.2 11.1 178 1-187 94-292 (312)
31 3m19_A Variable lymphocyte rec 99.7 8.1E-17 2.8E-21 149.6 13.7 151 2-159 35-191 (251)
32 1xku_A Decorin; proteoglycan, 99.7 2.4E-16 8.3E-21 152.0 17.5 145 3-158 53-203 (330)
33 2o6q_A Variable lymphocyte rec 99.7 1.2E-16 4.1E-21 150.0 14.7 169 2-179 37-216 (270)
34 2z62_A TOLL-like receptor 4, v 99.7 1E-16 3.5E-21 150.8 14.2 143 8-158 13-160 (276)
35 1wwl_A Monocyte differentiatio 99.7 6.9E-17 2.4E-21 155.0 12.7 178 4-186 65-270 (312)
36 3zyi_A Leucine-rich repeat-con 99.7 1.6E-16 5.4E-21 160.3 15.6 170 2-179 75-253 (452)
37 2id5_A Lingo-1, leucine rich r 99.7 1.5E-16 5.2E-21 161.2 15.4 150 2-158 32-187 (477)
38 2z80_A TOLL-like receptor 2, v 99.7 6E-17 2E-21 157.9 12.0 148 2-157 76-232 (353)
39 3zyj_A Leucine-rich repeat-con 99.7 3.1E-16 1.1E-20 157.5 17.5 168 2-179 64-242 (440)
40 3o6n_A APL1; leucine-rich repe 99.7 1.6E-16 5.5E-21 156.9 14.8 176 1-185 68-311 (390)
41 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.9E-21 151.4 13.7 168 2-179 31-206 (290)
42 2z80_A TOLL-like receptor 2, v 99.7 2.6E-17 9E-22 160.4 8.5 169 2-179 52-233 (353)
43 3o6n_A APL1; leucine-rich repe 99.7 5.3E-16 1.8E-20 153.2 17.0 167 1-178 44-215 (390)
44 2ft3_A Biglycan; proteoglycan, 99.7 3.9E-16 1.3E-20 150.8 15.3 166 3-178 34-203 (332)
45 3t6q_A CD180 antigen; protein- 99.7 2.7E-16 9.3E-21 163.9 15.2 172 2-179 33-213 (606)
46 4fmz_A Internalin; leucine ric 99.7 7.3E-16 2.5E-20 149.5 17.2 166 1-179 65-232 (347)
47 1xku_A Decorin; proteoglycan, 99.7 3.5E-16 1.2E-20 150.9 14.8 173 1-185 75-256 (330)
48 1m9s_A Internalin B; cell inva 99.7 1.4E-16 4.9E-21 166.3 12.8 165 1-179 42-208 (605)
49 2ast_B S-phase kinase-associat 99.7 4.2E-17 1.4E-21 157.4 8.0 174 2-179 70-258 (336)
50 2id5_A Lingo-1, leucine rich r 99.7 2.9E-16 1E-20 159.1 14.4 177 1-185 55-240 (477)
51 4glp_A Monocyte differentiatio 99.7 2.8E-16 9.5E-21 150.5 12.7 170 2-178 91-282 (310)
52 3oja_B Anopheles plasmodium-re 99.7 3.7E-16 1.3E-20 163.2 14.7 176 1-185 98-340 (597)
53 3v47_A TOLL-like receptor 5B a 99.7 3.1E-16 1.1E-20 157.6 13.6 151 2-158 30-191 (455)
54 3oja_B Anopheles plasmodium-re 99.7 4E-16 1.4E-20 162.9 14.7 177 1-185 74-317 (597)
55 4ecn_A Leucine-rich repeat pro 99.7 7.9E-17 2.7E-21 174.3 9.4 171 1-179 490-684 (876)
56 3t6q_A CD180 antigen; protein- 99.7 4.8E-16 1.7E-20 162.0 14.2 171 3-179 255-436 (606)
57 1xeu_A Internalin C; cellular 99.7 4.8E-16 1.6E-20 145.7 12.5 161 3-178 20-182 (263)
58 3v47_A TOLL-like receptor 5B a 99.7 8.5E-16 2.9E-20 154.4 14.7 107 73-186 275-388 (455)
59 3j0a_A TOLL-like receptor 5; m 99.7 2.2E-15 7.7E-20 163.4 18.9 152 2-158 24-185 (844)
60 1h6t_A Internalin B; cell adhe 99.7 9.2E-16 3.2E-20 145.8 14.0 145 1-158 67-211 (291)
61 3vq2_A TLR4, TOLL-like recepto 99.6 2E-16 6.9E-21 164.9 10.1 172 1-180 327-509 (606)
62 2v9t_B SLIT homolog 2 protein 99.6 1.1E-15 3.6E-20 139.4 13.1 145 5-158 14-163 (220)
63 4glp_A Monocyte differentiatio 99.6 3.2E-16 1.1E-20 150.1 10.1 169 1-178 116-304 (310)
64 1xeu_A Internalin C; cellular 99.6 1.6E-16 5.6E-21 148.9 7.8 144 1-158 40-183 (263)
65 2z7x_B TOLL-like receptor 1, v 99.6 2.3E-15 8E-20 154.0 17.1 168 3-179 303-479 (520)
66 2ast_B S-phase kinase-associat 99.6 2.8E-16 9.7E-21 151.5 9.2 173 1-178 92-282 (336)
67 2ft3_A Biglycan; proteoglycan, 99.6 3.7E-15 1.3E-19 143.9 17.0 164 2-178 54-227 (332)
68 3oja_A Leucine-rich immune mol 99.6 5.7E-16 1.9E-20 157.9 11.1 173 2-186 34-231 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-15 3.7E-20 146.9 12.3 172 2-185 34-230 (317)
70 3oja_A Leucine-rich immune mol 99.6 1E-15 3.6E-20 156.0 12.4 151 16-178 21-201 (487)
71 2v70_A SLIT-2, SLIT homolog 2 99.6 2E-15 6.8E-20 137.6 12.8 144 5-158 14-164 (220)
72 2o6s_A Variable lymphocyte rec 99.6 1.8E-15 6.2E-20 136.2 12.1 160 5-178 10-175 (208)
73 1o6v_A Internalin A; bacterial 99.6 5.9E-15 2E-19 149.3 17.1 170 1-185 176-347 (466)
74 2ell_A Acidic leucine-rich nuc 99.6 1.6E-15 5.5E-20 131.8 11.2 132 23-164 22-163 (168)
75 3bz5_A Internalin-J, INLJ; leu 99.6 3.8E-15 1.3E-19 150.6 15.3 97 2-107 42-138 (457)
76 3e6j_A Variable lymphocyte rec 99.6 4E-15 1.4E-19 136.3 13.7 145 5-158 22-170 (229)
77 2o6s_A Variable lymphocyte rec 99.6 6.3E-15 2.2E-19 132.6 14.6 149 3-165 29-183 (208)
78 2z81_A CD282 antigen, TOLL-lik 99.6 7E-16 2.4E-20 158.8 9.0 171 2-178 26-206 (549)
79 3g06_A SSPH2 (leucine-rich rep 99.6 9.7E-15 3.3E-19 152.8 17.4 91 3-107 62-152 (622)
80 2z63_A TOLL-like receptor 4, v 99.6 1.1E-15 3.9E-20 157.7 10.1 177 1-185 324-510 (570)
81 1o6v_A Internalin A; bacterial 99.6 1E-14 3.5E-19 147.5 16.9 167 1-181 198-366 (466)
82 3bz5_A Internalin-J, INLJ; leu 99.6 8.9E-15 3E-19 147.9 16.2 141 2-158 85-244 (457)
83 1m9s_A Internalin B; cell inva 99.6 6.3E-15 2.2E-19 153.8 15.3 146 1-159 64-209 (605)
84 1ziw_A TOLL-like receptor 3; i 99.6 5.6E-15 1.9E-19 156.1 14.8 150 2-158 25-182 (680)
85 4ezg_A Putative uncharacterize 99.6 6.1E-15 2.1E-19 131.8 12.9 130 1-132 65-195 (197)
86 2z81_A CD282 antigen, TOLL-lik 99.6 3.4E-15 1.2E-19 153.6 12.6 171 2-185 310-489 (549)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.9E-15 3E-19 151.4 15.0 128 22-157 350-483 (562)
88 2z63_A TOLL-like receptor 4, v 99.6 6.9E-15 2.4E-19 151.8 13.9 170 2-178 28-210 (570)
89 2z7x_B TOLL-like receptor 1, v 99.6 7.2E-15 2.5E-19 150.3 13.0 152 1-160 323-481 (520)
90 4ay9_X Follicle-stimulating ho 99.6 9.1E-15 3.1E-19 142.5 12.7 177 2-185 30-218 (350)
91 1ziw_A TOLL-like receptor 3; i 99.6 3.3E-14 1.1E-18 150.2 17.6 130 1-132 48-185 (680)
92 3g06_A SSPH2 (leucine-rich rep 99.6 2E-14 6.7E-19 150.5 15.6 195 1-229 80-291 (622)
93 3cvr_A Invasion plasmid antige 99.6 1.3E-14 4.6E-19 150.1 14.1 157 3-185 60-223 (571)
94 1jl5_A Outer protein YOPM; leu 99.6 1.5E-14 5E-19 146.2 14.1 157 3-179 112-268 (454)
95 3e6j_A Variable lymphocyte rec 99.6 1.6E-14 5.4E-19 132.4 12.9 129 2-132 40-173 (229)
96 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.9E-19 142.5 11.9 163 5-178 21-199 (361)
97 1dce_A Protein (RAB geranylger 99.6 6.7E-17 2.3E-21 167.7 -4.4 154 2-164 349-549 (567)
98 4g8a_A TOLL-like receptor 4; l 99.6 1.9E-14 6.4E-19 149.9 14.0 149 2-158 52-212 (635)
99 3o53_A Protein LRIM1, AGAP0063 99.5 1.2E-14 3.9E-19 139.7 10.4 166 1-180 79-249 (317)
100 1jl5_A Outer protein YOPM; leu 99.5 4.1E-14 1.4E-18 142.9 14.6 154 3-178 92-247 (454)
101 2ca6_A RAN GTPase-activating p 99.5 3.6E-15 1.2E-19 147.0 6.7 179 1-179 31-255 (386)
102 3j0a_A TOLL-like receptor 5; m 99.5 3.7E-14 1.3E-18 153.8 14.9 153 1-158 47-215 (844)
103 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.4E-19 122.9 9.1 125 24-156 16-149 (149)
104 2ell_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 123.0 11.7 129 2-132 24-161 (168)
105 2v9t_B SLIT homolog 2 protein 99.5 4E-14 1.4E-18 128.9 12.1 130 2-132 32-166 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.5 4.2E-14 1.4E-18 128.7 12.1 130 2-132 32-167 (220)
107 2ca6_A RAN GTPase-activating p 99.5 4.1E-15 1.4E-19 146.6 5.2 178 1-179 59-285 (386)
108 2xot_A Amphoterin-induced prot 99.5 5.2E-14 1.8E-18 137.7 12.7 149 2-158 39-200 (361)
109 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 3E-14 1E-18 147.4 11.4 151 1-160 352-510 (562)
110 2je0_A Acidic leucine-rich nuc 99.5 5E-14 1.7E-18 119.8 10.8 123 2-126 17-148 (149)
111 3cvr_A Invasion plasmid antige 99.5 9.2E-14 3.2E-18 143.8 11.2 152 2-180 80-242 (571)
112 4b8c_D Glucose-repressible alc 99.5 1.3E-14 4.3E-19 154.9 4.4 113 18-132 217-330 (727)
113 4b8c_D Glucose-repressible alc 99.5 3.5E-14 1.2E-18 151.5 7.7 169 3-178 174-369 (727)
114 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-13 6.5E-18 119.7 10.5 128 21-158 15-151 (176)
115 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-13 4.7E-18 120.6 9.3 128 1-132 18-154 (176)
116 1w8a_A SLIT protein; signaling 99.5 1.6E-13 5.3E-18 122.2 9.4 125 5-132 11-140 (192)
117 4ay9_X Follicle-stimulating ho 99.4 6.2E-13 2.1E-17 129.5 13.3 182 1-190 53-245 (350)
118 4g8a_A TOLL-like receptor 4; l 99.4 2.3E-13 7.8E-18 141.6 10.9 150 1-157 370-528 (635)
119 2wfh_A SLIT homolog 2 protein 99.4 4.3E-13 1.5E-17 119.5 10.7 98 6-107 14-113 (193)
120 3goz_A Leucine-rich repeat-con 99.4 1.1E-13 3.8E-18 135.3 5.7 175 2-178 22-235 (362)
121 1ds9_A Outer arm dynein; leuci 99.4 9.3E-15 3.2E-19 130.7 -3.3 125 4-132 25-154 (198)
122 1w8a_A SLIT protein; signaling 99.4 8.2E-13 2.8E-17 117.5 9.5 123 28-159 11-138 (192)
123 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.8E-17 135.9 11.8 119 26-154 442-567 (567)
124 2o6r_A Variable lymphocyte rec 99.4 1.9E-12 6.5E-17 113.3 11.6 124 5-132 10-138 (177)
125 3goz_A Leucine-rich repeat-con 99.4 2.3E-13 7.7E-18 133.1 4.7 174 3-179 52-264 (362)
126 1z7x_W Ribonuclease inhibitor; 99.3 5.1E-13 1.7E-17 134.2 6.1 170 2-179 199-409 (461)
127 2wfh_A SLIT homolog 2 protein 99.3 4.2E-12 1.4E-16 113.1 11.4 104 2-107 31-137 (193)
128 2o6r_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 109.5 11.3 124 27-160 9-137 (177)
129 1z7x_W Ribonuclease inhibitor; 99.3 8.8E-13 3E-17 132.5 6.0 175 1-179 169-381 (461)
130 1ds9_A Outer arm dynein; leuci 99.3 4E-14 1.4E-18 126.6 -6.4 130 27-164 25-157 (198)
131 3ogk_B Coronatine-insensitive 99.2 7E-12 2.4E-16 129.9 5.1 127 23-155 110-251 (592)
132 2r9u_A Variable lymphocyte rec 99.2 7.2E-11 2.5E-15 103.3 10.7 99 5-107 15-116 (174)
133 3g39_A Variable lymphocyte rec 99.2 6.6E-11 2.3E-15 103.0 10.3 100 4-107 11-113 (170)
134 2r9u_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 102.3 9.9 103 27-132 14-119 (174)
135 2p1m_B Transport inhibitor res 99.1 3.4E-11 1.2E-15 124.7 6.3 147 1-153 65-241 (594)
136 3g39_A Variable lymphocyte rec 99.1 1.8E-10 6.3E-15 100.2 9.6 104 26-132 10-116 (170)
137 3ogk_B Coronatine-insensitive 99.1 8E-11 2.7E-15 121.9 7.2 80 1-81 163-251 (592)
138 2p1m_B Transport inhibitor res 99.1 1.2E-11 4E-16 128.2 0.0 171 1-176 129-346 (594)
139 3un9_A NLR family member X1; l 99.1 3.2E-11 1.1E-15 118.5 2.5 156 2-158 72-250 (372)
140 2ifg_A High affinity nerve gro 99.0 6.9E-10 2.4E-14 107.3 10.0 100 6-107 12-114 (347)
141 3sb4_A Hypothetical leucine ri 99.0 5E-10 1.7E-14 107.7 9.0 58 1-60 48-135 (329)
142 2ifg_A High affinity nerve gro 98.9 1.9E-09 6.6E-14 104.2 8.4 102 29-132 12-117 (347)
143 2ra8_A Uncharacterized protein 98.8 5.6E-09 1.9E-13 102.0 8.1 56 46-104 169-227 (362)
144 3un9_A NLR family member X1; l 98.8 3.5E-09 1.2E-13 103.9 5.1 129 2-132 101-253 (372)
145 3sb4_A Hypothetical leucine ri 98.8 1.4E-08 4.9E-13 97.5 9.1 167 1-184 100-326 (329)
146 4fdw_A Leucine rich hypothetic 98.6 4.1E-07 1.4E-11 90.0 13.1 140 3-156 136-280 (401)
147 2ra8_A Uncharacterized protein 98.5 3.4E-07 1.2E-11 89.3 8.9 154 1-158 138-318 (362)
148 4fdw_A Leucine rich hypothetic 98.4 1.4E-06 4.9E-11 86.1 13.0 155 3-165 158-316 (401)
149 3e4g_A ATP synthase subunit S, 98.4 5.4E-07 1.8E-11 78.4 6.5 84 74-162 62-154 (176)
150 1io0_A Tropomodulin; LRR prote 98.3 6E-07 2E-11 78.9 6.5 83 21-103 32-128 (185)
151 1io0_A Tropomodulin; LRR prote 98.3 7.7E-07 2.6E-11 78.2 6.1 117 41-158 28-162 (185)
152 3e4g_A ATP synthase subunit S, 98.3 1.8E-06 6E-11 75.1 7.4 83 26-109 62-152 (176)
153 3rw6_A Nuclear RNA export fact 97.8 4.2E-05 1.5E-09 71.1 7.6 63 70-132 167-234 (267)
154 3rw6_A Nuclear RNA export fact 97.7 5.3E-05 1.8E-09 70.4 7.4 77 47-124 168-257 (267)
155 4fs7_A Uncharacterized protein 97.3 0.001 3.5E-08 65.0 10.0 55 1-58 161-217 (394)
156 4fs7_A Uncharacterized protein 97.1 0.0026 8.9E-08 62.1 11.0 60 19-82 156-217 (394)
157 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0029 9.8E-08 55.8 6.7 60 48-107 40-109 (197)
158 4h09_A Hypothetical leucine ri 96.7 0.0081 2.8E-07 58.0 10.7 78 70-154 237-317 (379)
159 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0031 1.1E-07 55.6 6.0 110 21-130 37-169 (197)
160 4gt6_A Cell surface protein; l 96.3 0.014 4.7E-07 56.9 9.5 105 44-158 260-368 (394)
161 4h09_A Hypothetical leucine ri 96.3 0.027 9.4E-07 54.2 11.4 125 20-156 212-342 (379)
162 4gt6_A Cell surface protein; l 96.1 0.014 4.6E-07 56.9 8.4 124 20-156 260-387 (394)
163 3rfe_A Platelet glycoprotein I 95.4 0.027 9.3E-07 45.9 6.3 52 53-107 12-66 (130)
164 3rfe_A Platelet glycoprotein I 94.7 0.039 1.3E-06 44.9 5.2 53 76-130 11-67 (130)
165 3ukw_C Bimax1 peptide; arm rep 72.9 1.1 3.9E-05 24.5 0.8 12 397-408 15-26 (28)
166 2lz0_A Uncharacterized protein 25.2 75 0.0026 23.8 4.0 46 11-58 5-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.2e-22 Score=193.95 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=173.9
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
+++++|+|++|.++.+|..++++++|++|+|++| .+..+|..+..+++|++|+|++| .+..+|..++++++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECC
Confidence 5789999999999999999999999999999996 45689998999999999999996 456899999999999999999
Q ss_pred CCCCC-ccChhhhc---------cCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCC
Q 045186 82 GTSIT-EVPSSIEL---------LHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLK 150 (411)
Q Consensus 82 ~~~i~-~lp~~i~~---------l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~ 150 (411)
+|.+. .+|..++. +++|+.|++++|.. ..+..++.+++|++|+|++|.+.+ +|..+..+++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~------l~~~l~~l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA------LGPAIHHLPKLE 232 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC------CCGGGGGCTTCC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc------CchhhccCCCCC
Confidence 97655 88887665 99999999999973 334558999999999999999999 998899999999
Q ss_pred EecccCcccccccCCC---CCCCceEEecCCCCCCcccC-CcCcchhhhcccCCCCCceEEEccCCCCCcccccCCCCce
Q 045186 151 ELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG-ALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSS 226 (411)
Q Consensus 151 ~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~-~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~~~s 226 (411)
.|+|++|...+.+|.. .++|+.|++++|..++.++. +.++ ..++.+.+..+. --..+|+||........
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l--~~L~~L~L~~n~-----~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL--TQLEKLDLRGCV-----NLSRLPSLIAQLPANCI 305 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC--TTCCEEECTTCT-----TCCCCCGGGGGSCTTCE
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC--CCCCEEeCCCCC-----chhhccHHHhhccCceE
Confidence 9999999988888864 37899999999988888874 1111 111111111111 12479999998877655
Q ss_pred EEEEcCCCCC
Q 045186 227 ITVTRPSYFY 236 (411)
Q Consensus 227 l~~~lp~~~~ 236 (411)
+ .+|.+..
T Consensus 306 l--~l~~~~~ 313 (328)
T 4fcg_A 306 I--LVPPHLQ 313 (328)
T ss_dssp E--ECCGGGS
T ss_pred E--eCCHHHH
Confidence 4 4455543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2.3e-21 Score=187.92 Aligned_cols=180 Identities=29% Similarity=0.457 Sum_probs=162.6
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccC---------
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS--------- 71 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~--------- 71 (411)
+++|++|+|++|.++.+|..++++++|++|+|++| .+..+|..+..+++|++|+|++|+.++.+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 46899999999999999999999999999999996 56699999999999999999999999999987764
Q ss_pred CCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCC
Q 045186 72 MEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLK 150 (411)
Q Consensus 72 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~ 150 (411)
+++|++|+|++|.++.+|..++.+++|+.|++++|.. ..+..++.+++|+.|+|++|++.+ .+|..+..+++|+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-----~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-----NYPPIFGGRAPLK 256 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-----BCCCCTTCCCCCC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-----hhHHHhcCCCCCC
Confidence 9999999999999999999999999999999999983 233458999999999999988776 4788899999999
Q ss_pred EecccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186 151 ELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 151 ~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~ 186 (411)
.|+|++|+.++.+|.. .++|+.|++++|..++.+|.
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 9999999999998863 37899999999999998874
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=5.3e-19 Score=169.98 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=165.2
Q ss_pred CceeEEEEeCCCCC---cccccccCCCCccEEEEec-CCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcE
Q 045186 2 ECLRELLLDGTDIK---ELPVSIELLSGLVQLSLKG-CKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLE 77 (411)
Q Consensus 2 ~~L~~L~L~~~~l~---~lp~si~~l~~L~~L~L~~-c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 77 (411)
.+++.|+|+++.+. .+|..++++++|++|+|++ |...+.+|..+.++++|++|+|++|...+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 47999999999998 5899999999999999995 5555688999999999999999997766689999999999999
Q ss_pred EEccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhHHHhhcc-ccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186 78 LYLDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTTIIYIMA-FARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153 (411)
Q Consensus 78 L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~-~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~ 153 (411)
|++++|.++ .+|..++.+++|+.|++++|.. ..+..+..++ +|+.|++++|.+.+ .+|..+..++ |+.|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-----~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-----KIPPTFANLN-LAFVD 203 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-----ECCGGGGGCC-CSEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-----cCChHHhCCc-ccEEE
Confidence 999999999 8999999999999999999984 4456688887 99999999999985 3788888887 99999
Q ss_pred ccCcccccccCCC---CCCCceEEecCCCCCCcccCCcCcchhhhcccCCCCCceEEEccCCCCCcccccCCCCceEEE
Q 045186 154 LEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNEGSSITV 229 (411)
Q Consensus 154 L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~~~sl~~ 229 (411)
+++|.....+|.. .++|+.|+++++.--..++.+..+ ..++.+.+..+.+. ..+|.||........+.+
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l--~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS--KNLNGLDLRNNRIY-----GTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCC--TTCCEEECCSSCCE-----ECCCGGGGGCTTCCEEEC
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCccccc--CCCCEEECcCCccc-----CcCChHHhcCcCCCEEEC
Confidence 9998755444432 367888888877433333322211 11122222222221 257888877665544433
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=9.4e-19 Score=168.25 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=152.5
Q ss_pred CCceeEEEEeC-CCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 1 MECLRELLLDG-TDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~-~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
+++|++|+|++ |.+. .+|..++++++|++|+|++|...+.+|..+..+++|++|+|++|...+.+|..++.+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 57899999996 8887 789899999999999999976555899999999999999999977666899999999999999
Q ss_pred EccCCCCC-ccChhhhccC-CCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecc
Q 045186 79 YLDGTSIT-EVPSSIELLH-GLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELEL 154 (411)
Q Consensus 79 ~L~~~~i~-~lp~~i~~l~-~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L 154 (411)
++++|.++ .+|..++.++ +|+.|++++|. +..+..+..++ |+.|++++|.+.+ .+|..+..+++|+.|++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-----DASVLFGSDKNTQKIHL 228 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-----CCGGGCCTTSCCSEEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-----cCCHHHhcCCCCCEEEC
Confidence 99999999 8999999998 99999999997 24455677777 9999999999986 26678899999999999
Q ss_pred cCcccccccCCC--CCCCceEEecCCCCCCccc
Q 045186 155 EDCKRLQSLPQI--PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 155 ~~c~~l~~lp~l--~~~L~~L~~~~c~~L~~l~ 185 (411)
++|.....+|.+ .++|++|+++++.--..++
T Consensus 229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp CSSEECCBGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred CCCceeeecCcccccCCCCEEECcCCcccCcCC
Confidence 998765555543 4789999998875433333
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=2e-18 Score=159.06 Aligned_cols=176 Identities=13% Similarity=0.137 Sum_probs=145.4
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L 78 (411)
++|++|+|++|.|+.+|. .++++++|++|+|++|..++.+|. .+..+++|++|++++|+.++.+| ..+.++++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999998876 689999999999999765877765 67889999999999977788777 467889999999
Q ss_pred EccCCCCCccChhhhccCCCC---EEecCCC-C--CChhHHHhhccccc-eeecCCCCccccccccccchhhhcCCCCCE
Q 045186 79 YLDGTSITEVPSSIELLHGLE---LLNLNNC-K--NLWTTIIYIMAFAR-SFQFDGKEFISCSFDVVFSVSISGLLNLKE 151 (411)
Q Consensus 79 ~L~~~~i~~lp~~i~~l~~L~---~L~L~~~-~--~~~~~~l~~l~~L~-~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~ 151 (411)
++++|.++.+|. ++.+++|+ .|++++| . ......+..+++|+ .|++++|.++. +|......++|+.
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~------i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS------VQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE------ECTTTTTTCEEEE
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc------cCHhhcCCCCCCE
Confidence 999999999997 88888888 9999999 4 22334588899999 99999999998 8876655589999
Q ss_pred ecccCcccccccCCC----C-CCCceEEecCCCCCCccc
Q 045186 152 LELEDCKRLQSLPQI----P-PNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 152 L~L~~c~~l~~lp~l----~-~~L~~L~~~~c~~L~~l~ 185 (411)
|++++|+.++.+|.- . ++|+.|+++++ .++.++
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~ 221 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALP 221 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCC
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCC
Confidence 999998777777642 2 57888888764 344544
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.1e-18 Score=163.07 Aligned_cols=170 Identities=22% Similarity=0.276 Sum_probs=142.4
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCccc-chhccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L 78 (411)
++|++|+|++|.|+.++. .++++++|++|+|++|. +..+ |..+..+++|++|++++|..++.+ |..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 579999999999998874 58999999999999964 5554 778899999999999998767776 6788999999999
Q ss_pred EccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecc
Q 045186 79 YLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELEL 154 (411)
Q Consensus 79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L 154 (411)
++++|.++.+ |..+..+++|+.|++++|. ......++.+++|+.|+|++|.++. +|. .+..+++|+.|++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------VPERAFRGLHSLDRLLL 184 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------cCHHHhcCccccCEEEC
Confidence 9999999966 5668899999999999997 3334458899999999999999998 875 4888999999999
Q ss_pred cCcccccccCCC---CCCCceEEecCC
Q 045186 155 EDCKRLQSLPQI---PPNLWLVRANGC 178 (411)
Q Consensus 155 ~~c~~l~~lp~l---~~~L~~L~~~~c 178 (411)
++|......|.. .++|+.|+++++
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccCHhHccCcccccEeeCCCC
Confidence 998644333432 268899999887
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.3e-18 Score=151.80 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=116.0
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++|++|++++|.|+.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|......|..++.+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 57888888888888888 5888888888888886 555554 57788888888888865545567778888888888888
Q ss_pred CCCCC-ccChhhhccCCCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 82 GTSIT-EVPSSIELLHGLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 82 ~~~i~-~lp~~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
+|.++ ..|..++.+++|+.|++++|. ......+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~------~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD------YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC------CT-TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC------hH-HhccCCCCCEEEeeCcc
Confidence 88888 467778888888888888886 3333457888888888888888887 77 67888888888888865
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=9.6e-18 Score=158.55 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=130.5
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT 83 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (411)
++++.+++.++.+|..+ .++|++|+|++| .+..+| ..+..+++|++|+|++|......|..++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56788888888888644 578999999985 455555 56888999999999996544444778888999999999999
Q ss_pred C-CCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCcc
Q 045186 84 S-ITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDCK 158 (411)
Q Consensus 84 ~-i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c~ 158 (411)
. ++.+ |..+..+++|+.|++++|. ...+..+..+++|++|++++|.+.. +|. .+..+++|+.|++++|.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA------LPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc------cCHhHhccCCCccEEECCCCc
Confidence 7 8876 6678889999999999987 3334558889999999999999988 774 47889999999999874
Q ss_pred cccccCC--C--CCCCceEEecCCC
Q 045186 159 RLQSLPQ--I--PPNLWLVRANGCS 179 (411)
Q Consensus 159 ~l~~lp~--l--~~~L~~L~~~~c~ 179 (411)
++.+|. + .++|+.|+++++.
T Consensus 165 -l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 165 -ISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSC
T ss_pred -ccccCHHHhcCccccCEEECCCCc
Confidence 566654 2 3688888888774
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=2.7e-18 Score=163.95 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=138.7
Q ss_pred CCceeEEEEeCCCCCcc---cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc--hhccCCCCC
Q 045186 1 MECLRELLLDGTDIKEL---PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP--QIVASMEDL 75 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l---p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp--~~l~~l~~L 75 (411)
+++|++|+|++|.++.+ +..+..+++|++|+|++| .+..+|..+..+++|++|++++| .+..++ ..+..+++|
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTC
T ss_pred cccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCC
Confidence 47899999999998855 566788999999999985 67788888889999999999995 455555 368889999
Q ss_pred cEEEccCCCCC-ccChhhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCC
Q 045186 76 LELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLK 150 (411)
Q Consensus 76 ~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~ 150 (411)
+.|++++|.+. ..|..+..+++|+.|++++|... .+..+..+++|+.|++++|.+.+ + |..+..+++|+
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~ 202 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQ 202 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCC
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC------cCHHHhcCCCCCC
Confidence 99999999998 45566888999999999998732 34558889999999999999988 6 56788899999
Q ss_pred EecccCcccccccCCC----CCCCceEEecCCCC
Q 045186 151 ELELEDCKRLQSLPQI----PPNLWLVRANGCSS 180 (411)
Q Consensus 151 ~L~L~~c~~l~~lp~l----~~~L~~L~~~~c~~ 180 (411)
.|++++|. ++.++.. .++|+.|+++++.-
T Consensus 203 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 203 VLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp EEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred EEECCCCc-cCccChhhccCcccCCEeECCCCCC
Confidence 99999876 4555432 26889999988743
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=3.3e-18 Score=180.06 Aligned_cols=175 Identities=13% Similarity=0.191 Sum_probs=154.8
Q ss_pred CCceeEEEEeCCCCCc------------------cccccc--CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCC
Q 045186 1 MECLRELLLDGTDIKE------------------LPVSIE--LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~------------------lp~si~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 60 (411)
|++|++|+|++|.++. +|..++ ++++|++|+|++|...+.+|..+.++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 5789999999999997 999999 99999999999998889999999999999999999987
Q ss_pred -CCc-ccchhccCC------CCCcEEEccCCCCCccCh--hhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCC
Q 045186 61 -KLK-KFPQIVASM------EDLLELYLDGTSITEVPS--SIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGK 128 (411)
Q Consensus 61 -~l~-~lp~~l~~l------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n 128 (411)
..+ .+|..++++ ++|++|++++|.++.+|. .++.+++|+.|++++|.. ..+ .++.+++|+.|++++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 444 699988876 999999999999999999 999999999999999983 233 6888999999999999
Q ss_pred CccccccccccchhhhcCCC-CCEecccCcccccccCCCC-----CCCceEEecCCCCCCc
Q 045186 129 EFISCSFDVVFSVSISGLLN-LKELELEDCKRLQSLPQIP-----PNLWLVRANGCSSLVT 183 (411)
Q Consensus 129 ~~~~~~~~~~lp~~l~~l~~-L~~L~L~~c~~l~~lp~l~-----~~L~~L~~~~c~~L~~ 183 (411)
.+.. +|..+..+++ |+.|++++|. ++.+|... ++|+.|+++++.--..
T Consensus 364 ~l~~------lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 364 QITE------IPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp EEEE------CCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred cccc------ccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCc
Confidence 9998 9999999999 9999999987 55777642 2688999988754433
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.1e-17 Score=158.47 Aligned_cols=169 Identities=22% Similarity=0.330 Sum_probs=142.6
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++|++|++++|.++.+| .+..+++|++|+|++| .+..++. +..+++|++|+|++|. +..++ .++.+++|+.|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence 57999999999999988 5899999999999996 6777777 8899999999999964 67776 58889999999999
Q ss_pred CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ 161 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~ 161 (411)
+|.++.++. +..+++|+.|++++|.......+..+++|+.|++++|.+.. ++. +..+++|+.|++++|. +.
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~-l~~l~~L~~L~l~~n~-l~ 186 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD------LTP-LANLSKLTTLKADDNK-IS 186 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC------CGG-GTTCTTCCEEECCSSC-CC
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC------Chh-hcCCCCCCEEECCCCc-cC
Confidence 999998875 89999999999999984433448899999999999999998 886 8899999999999975 55
Q ss_pred ccCCC--CCCCceEEecCCCCCCccc
Q 045186 162 SLPQI--PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 162 ~lp~l--~~~L~~L~~~~c~~L~~l~ 185 (411)
.++.+ .++|+.|++++|. +..++
T Consensus 187 ~~~~l~~l~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 187 DISPLASLPNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp CCGGGGGCTTCCEEECTTSC-CCBCG
T ss_pred cChhhcCCCCCCEEEccCCc-cCccc
Confidence 66543 3789999998874 34433
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.74 E-value=6.5e-18 Score=181.53 Aligned_cols=203 Identities=18% Similarity=0.153 Sum_probs=162.7
Q ss_pred CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
+++|++|+|++|.+. .+|..++.+++|++|+|++|...+.+|..+..+++|++|+|++|...+.+|..++.+++|+.|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 478999999999998 7888899999999999999877778999999999999999999887789999999999999999
Q ss_pred ccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhH--------------------------------------------
Q 045186 80 LDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTT-------------------------------------------- 112 (411)
Q Consensus 80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~-------------------------------------------- 112 (411)
|++|.++ .+|..++.+++|+.|++++|.. ..+.
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 9999998 8999999999999999998861 1111
Q ss_pred --------------------------HHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC
Q 045186 113 --------------------------IIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI 166 (411)
Q Consensus 113 --------------------------~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 166 (411)
.++.+++|+.|+|++|++++ .+|..++.+++|+.|+|++|...+.+|..
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-----YIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-----CCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-----cCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 13345789999999999986 48999999999999999999877788863
Q ss_pred ---CCCCceEEecCCCCCCcccC-CcCcchhhhcccCCCCCceEEEcc
Q 045186 167 ---PPNLWLVRANGCSSLVTLSG-ALNLRKSEYTAVSNPSHKLSIVVP 210 (411)
Q Consensus 167 ---~~~L~~L~~~~c~~L~~l~~-~~nl~~~~~~~~~~~~~~~~~~~p 210 (411)
.++|+.|+++++.--..+|. +.++ ..++.+....+.+...+|
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l--~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGC--CCCSEEECCSSEEEEECC
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECcCCcccccCC
Confidence 37889999988765445543 1111 112333444555554444
No 13
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.2e-17 Score=158.33 Aligned_cols=143 Identities=24% Similarity=0.370 Sum_probs=74.9
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++|++|+|++|.++.++. +..+++|++|+|++| .+..+| .+..+++|++|++++| .+..+|. ++.+++|+.|+++
T Consensus 63 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLD 137 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECC
Confidence 455555555555555554 555555555555553 244443 2555555555555553 2344443 4555555555555
Q ss_pred CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c 157 (411)
+|.++.++. ++.+++|+.|++++|.......+..+++|+.|++++|.+.. ++. +..+++|+.|++++|
T Consensus 138 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~------~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 138 LNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD------ISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC------CGG-GGGCTTCCEEECTTS
T ss_pred CCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc------Chh-hcCCCCCCEEEccCC
Confidence 555555543 55555555555555542222225555555555555555555 443 455555555555554
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=4.4e-17 Score=153.05 Aligned_cols=164 Identities=22% Similarity=0.317 Sum_probs=92.9
Q ss_pred eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEEcc
Q 045186 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELYLD 81 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~ 81 (411)
++.++++++.++.+|..+. ++|+.|+|++| .+..+|. .+..+++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 4556666666666665443 45666666664 3444432 4556666666666663 34444433 3556666666666
Q ss_pred CCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCc
Q 045186 82 GTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDC 157 (411)
Q Consensus 82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c 157 (411)
+|.++.+|.. +..+++|+.|++++|. ...+..+..+++|++|+|++|.+.. +|.. +..+++|+.|+|++|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS------LPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc------cCHhHccCCcccceeEecCC
Confidence 6666655543 4556666666666665 2223335666666666666666666 5533 456666666666665
Q ss_pred ccccccCC--C--CCCCceEEecCC
Q 045186 158 KRLQSLPQ--I--PPNLWLVRANGC 178 (411)
Q Consensus 158 ~~l~~lp~--l--~~~L~~L~~~~c 178 (411)
. ++.++. + .++|+.|+++++
T Consensus 168 ~-l~~~~~~~~~~l~~L~~L~L~~N 191 (270)
T 2o6q_A 168 Q-LKRVPEGAFDKLTELKTLKLDNN 191 (270)
T ss_dssp C-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred c-CcEeChhHhccCCCcCEEECCCC
Confidence 3 333432 1 145666666555
No 15
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.8e-17 Score=155.99 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=139.3
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
++|++|+|++|.++.++. .++++++|++|+|++| .+..++ ..+..+++|++|+|++|......|..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 369999999999998876 6899999999999996 555554 4688899999999999654444446788999999999
Q ss_pred ccCCCCCccCh-hhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCC----
Q 045186 80 LDGTSITEVPS-SIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLK---- 150 (411)
Q Consensus 80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~---- 150 (411)
+++|.++.++. .++.+++|+.|++++|... .+..+..+++|+.|++++|.+++ ++ ..+..+++|+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE------ECGGGGHHHHTCTTCCE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc------CCHHHhhhhhhccccce
Confidence 99999997766 6889999999999999833 35678999999999999999988 65 4566666666
Q ss_pred EecccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186 151 ELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 151 ~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~ 186 (411)
.|++++|. +..++.. ..+|+.|+++++. ++.++.
T Consensus 181 ~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~ 217 (276)
T 2z62_A 181 SLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPD 217 (276)
T ss_dssp EEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCT
T ss_pred eeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCH
Confidence 88888865 4555432 2478899998775 555553
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=5.9e-18 Score=183.08 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=153.5
Q ss_pred CCceeEEEEeCCCCCc------------------cccccc--CCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCC
Q 045186 1 MECLRELLLDGTDIKE------------------LPVSIE--LLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCS 60 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~------------------lp~si~--~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~ 60 (411)
|++|++|+|++|.|+. +|..++ ++++|++|+|++|...+.+|..+.++++|+.|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999998 999988 99999999999998899999999999999999999987
Q ss_pred CCc--ccchhccCCC-------CCcEEEccCCCCCccCh--hhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCC
Q 045186 61 KLK--KFPQIVASME-------DLLELYLDGTSITEVPS--SIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKE 129 (411)
Q Consensus 61 ~l~--~lp~~l~~l~-------~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~ 129 (411)
.+. .+|..++++. +|+.|+|++|.++.+|. .++++++|+.|+|++|....-..++.+++|+.|+|++|.
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCc
Confidence 344 6888776655 99999999999999999 999999999999999984322268899999999999999
Q ss_pred ccccccccccchhhhcCCC-CCEecccCcccccccCCCC-----CCCceEEecCCCCCCcc
Q 045186 130 FISCSFDVVFSVSISGLLN-LKELELEDCKRLQSLPQIP-----PNLWLVRANGCSSLVTL 184 (411)
Q Consensus 130 ~~~~~~~~~lp~~l~~l~~-L~~L~L~~c~~l~~lp~l~-----~~L~~L~~~~c~~L~~l 184 (411)
+.. +|..+..+++ |+.|+|++|. +..+|... ++|+.|++++|.--..+
T Consensus 607 l~~------lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 607 IEE------IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CSC------CCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred ccc------chHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 998 9999999999 9999999986 55777642 24889999887544333
No 17
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.6e-17 Score=156.54 Aligned_cols=163 Identities=22% Similarity=0.325 Sum_probs=137.8
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++|++|++++|.++.++. ++.+++|++|+|++| .+..++. +..+++|++|++++| .+..+|. ++.+++|+.|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECC
Confidence 578999999999998875 899999999999996 5677776 889999999999995 5666665 8899999999999
Q ss_pred CCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccccc
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQ 161 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~ 161 (411)
+|.++.++ .+..+++|+.|++++|.......+..+++|+.|++++|.+.+ ++. +..+++|+.|++++| .++
T Consensus 121 ~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~------~~~-l~~l~~L~~L~L~~N-~i~ 191 (291)
T 1h6t_A 121 HNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------IVP-LAGLTKLQNLYLSKN-HIS 191 (291)
T ss_dssp TSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC------CGG-GTTCTTCCEEECCSS-CCC
T ss_pred CCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc------chh-hcCCCccCEEECCCC-cCC
Confidence 99999874 688999999999999984444678999999999999999998 875 899999999999997 466
Q ss_pred ccCCCC--CCCceEEecCC
Q 045186 162 SLPQIP--PNLWLVRANGC 178 (411)
Q Consensus 162 ~lp~l~--~~L~~L~~~~c 178 (411)
.+|.+. ++|+.|+++++
T Consensus 192 ~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 192 DLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp BCGGGTTCTTCSEEEEEEE
T ss_pred CChhhccCCCCCEEECcCC
Confidence 665543 56777777654
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=3e-17 Score=176.39 Aligned_cols=227 Identities=18% Similarity=0.132 Sum_probs=177.2
Q ss_pred CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
+++|++|+|++|.++ .+|..++++++|+.|+|++|...+.+|..+..+++|++|++++|...+.+|..++++++|+.|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 478999999999998 7788899999999999999887778999999999999999999888889999999999999999
Q ss_pred ccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCcccc-----------------------
Q 045186 80 LDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISC----------------------- 133 (411)
Q Consensus 80 L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~----------------------- 133 (411)
|++|.++ .+|..++.+++|+.|++++|.. ..+..++.+++|+.|++++|.+.+.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 9999999 8999999999999999999983 4567799999999999999988741
Q ss_pred ------------------------------------------ccccccchhhhcCCCCCEecccCcccccccCCC---CC
Q 045186 134 ------------------------------------------SFDVVFSVSISGLLNLKELELEDCKRLQSLPQI---PP 168 (411)
Q Consensus 134 ------------------------------------------~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~ 168 (411)
...+.+|..+..+++|+.|+|++|...+.+|.- .+
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 000112333455688999999999877777753 37
Q ss_pred CCceEEecCCCCCCcccC-CcCcchhhhcccCCCCCceEEEccCCCCCcccccCCC-------CceEEEEcCCC
Q 045186 169 NLWLVRANGCSSLVTLSG-ALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNE-------GSSITVTRPSY 234 (411)
Q Consensus 169 ~L~~L~~~~c~~L~~l~~-~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~-------~~sl~~~lp~~ 234 (411)
.|+.|+++++.--..+|. +.++ ..++.+.+..+.+. +.||+.|..... .+.++..+|..
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L--~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDL--RGLNILDLSSNKLD-----GRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGC--TTCCEEECCSSCCE-----ECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCCEEeCcCCccCCCCChHHhCC--CCCCEEECCCCccc-----CcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 889999998865555553 1122 11233333333333 367888776554 45666677753
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=4.4e-17 Score=153.24 Aligned_cols=170 Identities=22% Similarity=0.359 Sum_probs=139.8
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEE
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELY 79 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 79 (411)
+++|+.|+++++.++.++. ++.+++|++|+|++| .+..++ .+..+++|++|++++|. +..+| ..++.+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccc-cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEE
Confidence 3679999999999988775 899999999999996 466665 58899999999999975 55555 4578999999999
Q ss_pred ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEeccc
Q 045186 80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELE 155 (411)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~ 155 (411)
+++|.++.+|.. ++.+++|+.|++++|. ...+..++.+++|+.|++++|.+++ +|.. +..+++|+.|+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS------LPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc------cCHHHhcCCccCCEEECC
Confidence 999999977765 7899999999999997 3344457899999999999999998 7754 6889999999999
Q ss_pred CcccccccCC-C---CCCCceEEecCCCCC
Q 045186 156 DCKRLQSLPQ-I---PPNLWLVRANGCSSL 181 (411)
Q Consensus 156 ~c~~l~~lp~-l---~~~L~~L~~~~c~~L 181 (411)
+|. +..++. . .++|+.|++.+++-.
T Consensus 190 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 190 QNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCc-CCccCHHHHhCCcCCCEEEccCCCcc
Confidence 986 444443 2 368888988876543
No 20
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=4.1e-17 Score=153.44 Aligned_cols=152 Identities=20% Similarity=0.264 Sum_probs=128.4
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
+++|++|+|++|.++.++ .++++++|++|+|++| .+..+|. .+..+++|++|++++|......+..++.+++|+.|+
T Consensus 62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 578999999999999876 5999999999999997 4555554 468899999999999754443445578999999999
Q ss_pred ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEeccc
Q 045186 80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELE 155 (411)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~ 155 (411)
+++|.++.+|.. ++.+++|+.|++++|. ...+..++.+++|+.|++++|.+.+ +|. .+..+++|+.|+++
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS------VPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc------cCHHHHhCCcCCCEEEcc
Confidence 999999988765 6899999999999997 3344457899999999999999998 764 47899999999999
Q ss_pred Ccccc
Q 045186 156 DCKRL 160 (411)
Q Consensus 156 ~c~~l 160 (411)
+|+..
T Consensus 214 ~N~~~ 218 (272)
T 3rfs_A 214 DNPWD 218 (272)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 98744
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=1.4e-17 Score=175.22 Aligned_cols=162 Identities=11% Similarity=0.190 Sum_probs=140.1
Q ss_pred CcccccccCCCCccEEEEecCCCCcc------------------cccccC--CCCCccEEEeeCCCCCcccchhccCCCC
Q 045186 15 KELPVSIELLSGLVQLSLKGCKNLLS------------------LPIAIS--SLKCLRNLKLSGCSKLKKFPQIVASMED 74 (411)
Q Consensus 15 ~~lp~si~~l~~L~~L~L~~c~~l~~------------------lp~~i~--~l~~L~~L~Ls~c~~l~~lp~~l~~l~~ 74 (411)
+.+|.+++++++|++|+|++|. +.. +|..++ ++++|++|+|++|...+.+|..++++++
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 3588889999999999999976 555 999999 9999999999999989999999999999
Q ss_pred CcEEEccCCC-CC--ccChhhhcc------CCCCEEecCCCCC-ChhH--HHhhccccceeecCCCCcc-ccccccccch
Q 045186 75 LLELYLDGTS-IT--EVPSSIELL------HGLELLNLNNCKN-LWTT--IIYIMAFARSFQFDGKEFI-SCSFDVVFSV 141 (411)
Q Consensus 75 L~~L~L~~~~-i~--~lp~~i~~l------~~L~~L~L~~~~~-~~~~--~l~~l~~L~~L~Ls~n~~~-~~~~~~~lp~ 141 (411)
|++|++++|. ++ .+|..++.+ ++|+.|++++|.. ..+. .++.+++|+.|++++|.+. . +|
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~------ip- 347 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK------LP- 347 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE------CC-
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc------hh-
Confidence 9999999998 88 499999887 9999999999983 3334 6999999999999999999 6 89
Q ss_pred hhhcCCCCCEecccCcccccccCCCC---CC-CceEEecCCCCCCcccC
Q 045186 142 SISGLLNLKELELEDCKRLQSLPQIP---PN-LWLVRANGCSSLVTLSG 186 (411)
Q Consensus 142 ~l~~l~~L~~L~L~~c~~l~~lp~l~---~~-L~~L~~~~c~~L~~l~~ 186 (411)
.+..+++|+.|++++|. +..+|... ++ |+.|+++++. ++.+|.
T Consensus 348 ~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~ 394 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPN 394 (636)
T ss_dssp CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCS
T ss_pred hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccccch
Confidence 89999999999999986 45776532 45 9999998875 445554
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=5.5e-17 Score=154.32 Aligned_cols=173 Identities=18% Similarity=0.183 Sum_probs=129.4
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|+++++++++++.+|..+. ++|+.|+|++|......|..+..+++|++|+|++| .+..++.. +.+++|+.|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEEC
Confidence 4678888888888888887654 68888888886543334566788888888888884 46666654 67888888888
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDC 157 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c 157 (411)
++|.++.+|..+..+++|+.|++++|. ...+..+..+++|+.|+|++|.+.. +|.. +..+++|+.|+|++|
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT------LPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTS
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc------cChhhcccccCCCEEECCCC
Confidence 888888888888888888888888887 3333557888888888888888888 7644 567888888888886
Q ss_pred ccccccCCC----CCCCceEEecCCCCCCccc
Q 045186 158 KRLQSLPQI----PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 158 ~~l~~lp~l----~~~L~~L~~~~c~~L~~l~ 185 (411)
. ++.+|.- .++|+.|+++++. ++.++
T Consensus 159 ~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip 188 (290)
T 1p9a_G 159 N-LTELPAGLLNGLENLDTLLLQENS-LYTIP 188 (290)
T ss_dssp C-CSCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred c-CCccCHHHhcCcCCCCEEECCCCc-CCccC
Confidence 4 5666642 2678888887653 44554
No 23
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=4.2e-17 Score=150.23 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=140.0
Q ss_pred CCceeEEEEeCCC-CCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCc-
Q 045186 1 MECLRELLLDGTD-IKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLL- 76 (411)
Q Consensus 1 l~~L~~L~L~~~~-l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~- 76 (411)
+++|++|++++|. ++.++. .++++++|++|+|++|+.+..+| ..+..+++|++|++++| .+..+|. ++.+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDI 131 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-ccccccccc
Confidence 5789999999997 998876 68999999999999866788776 45778999999999996 4667887 88888888
Q ss_pred --EEEccCC-CCCccChh-hhccCCCC-EEecCCCCCC--hhHHHhhccccceeecCCCC-ccccccccccc-hhhhcC-
Q 045186 77 --ELYLDGT-SITEVPSS-IELLHGLE-LLNLNNCKNL--WTTIIYIMAFARSFQFDGKE-FISCSFDVVFS-VSISGL- 146 (411)
Q Consensus 77 --~L~L~~~-~i~~lp~~-i~~l~~L~-~L~L~~~~~~--~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~lp-~~l~~l- 146 (411)
.|++++| .++.+|.. +..+++|+ .|++++|... ....+.. ++|+.|++++|. ++. +| ..+..+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~------i~~~~~~~l~ 204 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTV------IDKDAFGGVY 204 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCE------ECTTTTTTCS
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCccc------CCHHHhhccc
Confidence 9999999 99988864 88999999 9999999732 2223444 899999999994 988 86 457888
Q ss_pred CCCCEecccCcccccccCCC-CCCCceEEecCCCCC
Q 045186 147 LNLKELELEDCKRLQSLPQI-PPNLWLVRANGCSSL 181 (411)
Q Consensus 147 ~~L~~L~L~~c~~l~~lp~l-~~~L~~L~~~~c~~L 181 (411)
++|+.|++++|+ ++.+|.. .++|+.|++.++..|
T Consensus 205 ~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 205 SGPSLLDVSQTS-VTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp BCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC---
T ss_pred cCCcEEECCCCc-cccCChhHhccCceeeccCccCC
Confidence 999999999964 6677654 578899998887543
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=162.78 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=128.2
Q ss_pred CCceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcE
Q 045186 1 MECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLE 77 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~ 77 (411)
+++|++|+|++|.|+.++ ..|.++++|++|+|++| .+..+|. .+..+++|++|+|++|. +..+|. .+.++++|+.
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRR 164 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCE
Confidence 468899999999888775 45888999999999985 5666654 57788889999998854 555553 6778888888
Q ss_pred EEccCC-CCCccCh-hhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecc
Q 045186 78 LYLDGT-SITEVPS-SIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELEL 154 (411)
Q Consensus 78 L~L~~~-~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L 154 (411)
|++++| .+..++. .+..+++|+.|++++|.......+..+++|+.|+|++|.++. + |..+..+++|+.|+|
T Consensus 165 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA------IRPGSFQGLMHLQKLWM 238 (440)
T ss_dssp EECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE------ECTTTTTTCTTCCEEEC
T ss_pred eCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc------cChhhhccCccCCEEEC
Confidence 888874 5556655 577888888888888874333347778888888888888877 5 567788888888888
Q ss_pred cCcccccccCC----CCCCCceEEecCCCCCCccc
Q 045186 155 EDCKRLQSLPQ----IPPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 155 ~~c~~l~~lp~----l~~~L~~L~~~~c~~L~~l~ 185 (411)
++|. ++.++. -.++|+.|+++++ .++.++
T Consensus 239 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 271 (440)
T 3zyj_A 239 IQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLP 271 (440)
T ss_dssp TTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCC
T ss_pred CCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccC
Confidence 8865 444432 1267788888776 344444
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1e-16 Score=148.89 Aligned_cols=168 Identities=18% Similarity=0.226 Sum_probs=135.5
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+.++++++++.++.+|..+. ++|+.|+|++|......|..+..+++|++|+|++|......|..+..+++|++|+|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46789999999999998765 6899999999754444455688999999999999655444455688999999999999
Q ss_pred CCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCcc
Q 045186 83 TSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDCK 158 (411)
Q Consensus 83 ~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c~ 158 (411)
|.++.+|. .+..+++|+.|+|++|. ......+..+++|+.|+|++|.+.. +|. .+..+++|+.|+|++|.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------IPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------cCHHHcCcCcCCCEEECCCCc
Confidence 99997775 46899999999999997 3344457889999999999999999 876 68899999999999975
Q ss_pred cccccCC--C--CCCCceEEecCCC
Q 045186 159 RLQSLPQ--I--PPNLWLVRANGCS 179 (411)
Q Consensus 159 ~l~~lp~--l--~~~L~~L~~~~c~ 179 (411)
++.+|. + .++|+.|++.+++
T Consensus 167 -l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 167 -LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred -CCccCHHHHhCCCCCCEEEeeCCc
Confidence 555543 1 2567777777654
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=9.7e-17 Score=155.64 Aligned_cols=165 Identities=17% Similarity=0.237 Sum_probs=113.3
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|++++|.++.++ .+.++++|++|++++| .+..+|. +..+++|++|++++|..+..++. ++.+++|+.|++
T Consensus 87 l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l 162 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTV 162 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEEC
T ss_pred CCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEe
Confidence 468899999999888876 4888899999999885 5666665 77888888888888776666554 777888888888
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL 160 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l 160 (411)
++|.+..++. +..+++|+.|++++|.......+..+++|+.|++++|.+.. ++. +..+++|+.|++++|. +
T Consensus 163 ~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~------~~~-~~~~~~L~~L~l~~n~-l 233 (347)
T 4fmz_A 163 TESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD------ITP-VANMTRLNSLKIGNNK-I 233 (347)
T ss_dssp CSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC------CGG-GGGCTTCCEEECCSSC-C
T ss_pred cCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC------Cch-hhcCCcCCEEEccCCc-c
Confidence 8888776665 77777888888877763332235566666666666666655 443 5556666666666653 3
Q ss_pred cccCCC--CCCCceEEecCC
Q 045186 161 QSLPQI--PPNLWLVRANGC 178 (411)
Q Consensus 161 ~~lp~l--~~~L~~L~~~~c 178 (411)
..++.+ .++|++|++++|
T Consensus 234 ~~~~~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 234 TDLSPLANLSQLTWLEIGTN 253 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSS
T ss_pred CCCcchhcCCCCCEEECCCC
Confidence 333322 245555555554
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=9.2e-17 Score=161.96 Aligned_cols=176 Identities=22% Similarity=0.244 Sum_probs=124.2
Q ss_pred CCceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcE
Q 045186 1 MECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLE 77 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~ 77 (411)
+++|++|+|++|.|+.++ ..+.++++|++|+|++| .+..+|. .+..+++|++|+|++|. +..+|. .+.++++|+.
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMR 175 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccE
Confidence 467888999888888765 55888888888888885 4556654 36778888888888854 555554 5777888888
Q ss_pred EEccC-CCCCccCh-hhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecc
Q 045186 78 LYLDG-TSITEVPS-SIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELEL 154 (411)
Q Consensus 78 L~L~~-~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L 154 (411)
|++++ +.+..++. .+..+++|+.|++++|.......+..+++|+.|+|++|.+.+ + |..+..+++|+.|+|
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE------IRPGSFHGLSSLKKLWV 249 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE------ECGGGGTTCTTCCEEEC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcc------cCcccccCccCCCEEEe
Confidence 88887 45556665 477788888888888874333346777788888888888777 5 566777888888888
Q ss_pred cCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186 155 EDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 155 ~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~ 185 (411)
++|......+.. .++|+.|+++++ .++.++
T Consensus 250 ~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 250 MNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence 876533222221 257777777766 444444
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=9.1e-18 Score=160.26 Aligned_cols=171 Identities=19% Similarity=0.271 Sum_probs=143.0
Q ss_pred CceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCccc---ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcE
Q 045186 2 ECLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSL---PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLE 77 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 77 (411)
++|++|+|++|.++.+|.. ++++++|++|+|++| .+..+ |..+..+++|++|+|++| .+..+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 4799999999999999876 789999999999996 45443 566778999999999995 57788888999999999
Q ss_pred EEccCCCCCccCh--hhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186 78 LYLDGTSITEVPS--SIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153 (411)
Q Consensus 78 L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~ 153 (411)
|++++|.++.++. .+..+++|+.|++++|.. ..+..+..+++|+.|++++|.+.+ ..+|..+..+++|+.|+
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLD 181 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEEE
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc----ccchhHHhhCcCCCEEE
Confidence 9999999997774 789999999999999983 344558889999999999998863 12678899999999999
Q ss_pred ccCccccccc-CCC---CCCCceEEecCCC
Q 045186 154 LEDCKRLQSL-PQI---PPNLWLVRANGCS 179 (411)
Q Consensus 154 L~~c~~l~~l-p~l---~~~L~~L~~~~c~ 179 (411)
+++|. ++.+ |.. .++|+.|+++++.
T Consensus 182 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 182 LSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp CTTSC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCCC-cCCcCHHHhcCCCCCCEEECCCCc
Confidence 99986 4444 432 2689999998874
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=1.4e-17 Score=173.75 Aligned_cols=179 Identities=15% Similarity=0.044 Sum_probs=144.3
Q ss_pred CCceeEEEEeCCCCCcc---cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCc
Q 045186 1 MECLRELLLDGTDIKEL---PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLL 76 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l---p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~ 76 (411)
+++|++|++++|.++.+ |..+..+++|++|+|++| .+..+|..+..+++|+.|++++|...+..| ..++.+++|+
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 47899999999988865 677899999999999986 477788888899999999999976555555 5788899999
Q ss_pred EEEccCCCCC-ccChhhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEe
Q 045186 77 ELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKEL 152 (411)
Q Consensus 77 ~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L 152 (411)
.|++++|.++ ..|..++.+++|+.|++++|... .+..++.+++|+.|+|++|.+++ ..|..+..+++|+.|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-----ISWGVFDTLHRLQLL 502 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-----ECTTTTTTCTTCCEE
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-----cChhhhcccccCCEE
Confidence 9999999998 56777899999999999998732 34558889999999999999888 235678899999999
Q ss_pred cccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186 153 ELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 153 ~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~ 186 (411)
+|++|+.....|.. .++|+.|++++|. ++.+|.
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEES
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCH
Confidence 99998654444542 2678999998885 666664
No 30
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=2.4e-17 Score=158.18 Aligned_cols=178 Identities=17% Similarity=0.166 Sum_probs=143.5
Q ss_pred CCceeEEEEeCCCCC-cccccc--cCCCCccEEEEecCCCCcccccccCCC-----CCccEEEeeCCCCCcccchhccCC
Q 045186 1 MECLRELLLDGTDIK-ELPVSI--ELLSGLVQLSLKGCKNLLSLPIAISSL-----KCLRNLKLSGCSKLKKFPQIVASM 72 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si--~~l~~L~~L~L~~c~~l~~lp~~i~~l-----~~L~~L~Ls~c~~l~~lp~~l~~l 72 (411)
+++|++|+|++|.++ .+|..+ +.+++|++|+|++| .+..+|..+..+ ++|++|+|++|...+..|..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 468999999999998 678876 89999999999996 556557767666 899999999976555555889999
Q ss_pred CCCcEEEccCCCCCc---cChhh--hccCCCCEEecCCCCCCh-h----HHHhhccccceeecCCCCccccccccccc--
Q 045186 73 EDLLELYLDGTSITE---VPSSI--ELLHGLELLNLNNCKNLW-T----TIIYIMAFARSFQFDGKEFISCSFDVVFS-- 140 (411)
Q Consensus 73 ~~L~~L~L~~~~i~~---lp~~i--~~l~~L~~L~L~~~~~~~-~----~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-- 140 (411)
++|++|++++|.+.. +|..+ +.+++|+.|++++|.... + ..+..+++|+.|+|++|.+.+ .+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~ 246 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD------AAGA 246 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS------SCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc------ccch
Confidence 999999999999763 45555 889999999999998432 1 235678999999999999988 54
Q ss_pred hhhhcCCCCCEecccCcccccccCC-CCCCCceEEecCCCCCCcccCC
Q 045186 141 VSISGLLNLKELELEDCKRLQSLPQ-IPPNLWLVRANGCSSLVTLSGA 187 (411)
Q Consensus 141 ~~l~~l~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~L~~l~~~ 187 (411)
..+..+++|+.|++++|. ++.+|. ++++|++|+++++ .++.+|.+
T Consensus 247 ~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N-~l~~~p~~ 292 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYN-RLDRNPSP 292 (312)
T ss_dssp SCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSS-CCCSCCCT
T ss_pred hhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCC-CCCCChhH
Confidence 355678999999999976 567775 4478999999886 45655543
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=8.1e-17 Score=149.57 Aligned_cols=151 Identities=20% Similarity=0.230 Sum_probs=128.5
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 79 (411)
++|++|+|++|.+..++. .++++++|++|+|++|......|..+..+++|++|+|++|. +..+| ..++.+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEE
Confidence 468999999999997765 59999999999999975444445567899999999999965 55555 5678999999999
Q ss_pred ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEeccc
Q 045186 80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELE 155 (411)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~ 155 (411)
|++|.++.+|.. +..+++|+.|+|++|. ...+..++.+++|+.|+|++|.+.+ +|. .+..+++|+.|+|+
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS------VPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc------cCHHHHhCCCCCCEEEee
Confidence 999999988876 5889999999999998 3344458899999999999999999 774 68899999999999
Q ss_pred Cccc
Q 045186 156 DCKR 159 (411)
Q Consensus 156 ~c~~ 159 (411)
+|+.
T Consensus 188 ~N~~ 191 (251)
T 3m19_A 188 GNQF 191 (251)
T ss_dssp SCCB
T ss_pred CCce
Confidence 9873
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.70 E-value=2.4e-16 Score=152.04 Aligned_cols=145 Identities=23% Similarity=0.207 Sum_probs=68.1
Q ss_pred ceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 3 CLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
+|++|+|++|.|+.++. .++++++|++|+|++|......|..+..+++|++|++++| .++.+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECC
Confidence 44555555555554443 3455555555555553222222444555555555555552 3444444332 445555555
Q ss_pred CCCCCccCh-hhhccCCCCEEecCCCCC----ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186 82 GTSITEVPS-SIELLHGLELLNLNNCKN----LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED 156 (411)
Q Consensus 82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~----~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~ 156 (411)
+|.++.++. .+..+++|+.|++++|.. .....+..+++|+.|++++|.+.. +|..+. ++|+.|++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLP--PSLTELHLDG 201 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS------CCSSCC--TTCSEEECTT
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc------CCcccc--ccCCEEECCC
Confidence 555554433 244555555555555542 122334455555555555555554 443332 4555555555
Q ss_pred cc
Q 045186 157 CK 158 (411)
Q Consensus 157 c~ 158 (411)
|.
T Consensus 202 n~ 203 (330)
T 1xku_A 202 NK 203 (330)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 33
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.2e-16 Score=150.02 Aligned_cols=169 Identities=21% Similarity=0.332 Sum_probs=140.3
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L 78 (411)
++|++|+|++|.|+.++. .++++++|++|+|++| .+..+|.. +..+++|++|+|++|. +..+| ..+..+++|+.|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 469999999999998875 6999999999999995 56677765 4789999999999964 55665 456889999999
Q ss_pred EccCCCCCccCh-hhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecc
Q 045186 79 YLDGTSITEVPS-SIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELEL 154 (411)
Q Consensus 79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L 154 (411)
++++|.++.+|. .++.+++|+.|++++|. ......+..+++|+.|+|++|.+.. +|. .+..+++|+.|+|
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR------VPEGAFDKLTELKTLKL 188 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEEC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE------eChhHhccCCCcCEEEC
Confidence 999999997765 47899999999999997 3334458899999999999999999 875 4788999999999
Q ss_pred cCcccccccCCC----CCCCceEEecCCC
Q 045186 155 EDCKRLQSLPQI----PPNLWLVRANGCS 179 (411)
Q Consensus 155 ~~c~~l~~lp~l----~~~L~~L~~~~c~ 179 (411)
++| .++.+|.- .++|+.|++.+++
T Consensus 189 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 189 DNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 997 46666542 2678888887754
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1e-16 Score=150.78 Aligned_cols=143 Identities=21% Similarity=0.192 Sum_probs=89.1
Q ss_pred EEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCC
Q 045186 8 LLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSI 85 (411)
Q Consensus 8 ~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i 85 (411)
+..+..+..+|..+. ++|++|+|++| .+..++. .+..+++|++|++++|. +..++ ..++.+++|++|++++|.+
T Consensus 13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 13 QCMELNFYKIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp ECTTSCCSSCCSSSC--TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EecCCCccccCCCCC--CCccEEECCCC-cccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCcc
Confidence 334445666666443 46777777764 4444443 56667777777777753 44443 3566677777777777777
Q ss_pred CccC-hhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 86 TEVP-SSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 86 ~~lp-~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
+.++ ..+..+++|+.|++++|.. .....++.+++|++|++++|.+.. ..+|..+..+++|+.|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS----FKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC----CCCCGGGGGCTTCCEEECCSSC
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce----ecCchhhccCCCCCEEECCCCC
Confidence 7554 4566777777777777662 222236667777777777777654 0135667777777777777764
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=6.9e-17 Score=154.99 Aligned_cols=178 Identities=15% Similarity=0.170 Sum_probs=137.8
Q ss_pred eeEEEEeCCCCC--ccccccc-------CCCCccEEEEecCCCCccccccc--CCCCCccEEEeeCCCCCcccchhccCC
Q 045186 4 LRELLLDGTDIK--ELPVSIE-------LLSGLVQLSLKGCKNLLSLPIAI--SSLKCLRNLKLSGCSKLKKFPQIVASM 72 (411)
Q Consensus 4 L~~L~L~~~~l~--~lp~si~-------~l~~L~~L~L~~c~~l~~lp~~i--~~l~~L~~L~Ls~c~~l~~lp~~l~~l 72 (411)
|++|+|++|.+. .+|..+. ++++|++|+|++|...+.+|..+ ..+++|++|+|++|. +..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 667888888875 4666555 79999999999986666788876 899999999999965 55558777766
Q ss_pred -----CCCcEEEccCCCCCccC-hhhhccCCCCEEecCCCCCChh----HH--HhhccccceeecCCCCccccccccccc
Q 045186 73 -----EDLLELYLDGTSITEVP-SSIELLHGLELLNLNNCKNLWT----TI--IYIMAFARSFQFDGKEFISCSFDVVFS 140 (411)
Q Consensus 73 -----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~----~~--l~~l~~L~~L~Ls~n~~~~~~~~~~lp 140 (411)
++|++|+|++|.++.++ ..++.+++|+.|++++|..... .. ++.+++|++|+|++|.+.. ...++
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~ 220 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET---PSGVC 220 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC---HHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc---hHHHH
Confidence 99999999999999776 7899999999999999984321 22 3889999999999999985 00033
Q ss_pred hh-hhcCCCCCEecccCcccccccC--CC--CCCCceEEecCCCCCCcccC
Q 045186 141 VS-ISGLLNLKELELEDCKRLQSLP--QI--PPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 141 ~~-l~~l~~L~~L~L~~c~~l~~lp--~l--~~~L~~L~~~~c~~L~~l~~ 186 (411)
.. +..+++|+.|++++|......| .. .++|+.|+++++. ++.+|.
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~ 270 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK 270 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhh
Confidence 22 3578999999999986444332 22 3789999998874 555553
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.6e-16 Score=160.25 Aligned_cols=170 Identities=20% Similarity=0.171 Sum_probs=140.1
Q ss_pred CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~ 79 (411)
++|++|+|++|.|+.+ |..|+++++|++|+|++|......|..+.++++|++|+|++|. +..+|. .++.+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEE
Confidence 4799999999999977 5569999999999999974443445778899999999999964 666664 588899999999
Q ss_pred ccCCCCCccCh-hhhccCCCCEEecCCCCCCh---hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186 80 LDGTSITEVPS-SIELLHGLELLNLNNCKNLW---TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155 (411)
Q Consensus 80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~---~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~ 155 (411)
|++|.++.+|. .+..+++|+.|++++|..+. ...+..+++|+.|+|++|++.. +| .+..+++|+.|+|+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~-~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD------MP-NLTPLVGLEELEMS 226 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS------CC-CCTTCTTCCEEECT
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc------cc-cccccccccEEECc
Confidence 99999998876 68899999999999976332 3458899999999999999999 87 58899999999999
Q ss_pred CcccccccCCC---CCCCceEEecCCC
Q 045186 156 DCKRLQSLPQI---PPNLWLVRANGCS 179 (411)
Q Consensus 156 ~c~~l~~lp~l---~~~L~~L~~~~c~ 179 (411)
+|......|.. .++|+.|++.++.
T Consensus 227 ~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp TSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred CCcCcccCcccccCccCCCEEEeCCCc
Confidence 98643333321 3688999998764
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=161.19 Aligned_cols=150 Identities=21% Similarity=0.192 Sum_probs=98.8
Q ss_pred CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~ 79 (411)
++|++|+|++|.|+.++ ..|.++++|++|+|++|......|..+.++++|++|+|++| .+..+|. .++++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 36777888888877664 45777888888888775433333666777778888888774 4555554 456777777777
Q ss_pred ccCCCCCcc-ChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEeccc
Q 045186 80 LDGTSITEV-PSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELE 155 (411)
Q Consensus 80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~ 155 (411)
|++|.++.+ |..+..+++|+.|++++|.. ..+..+..+++|+.|+|++|.+.. +|. .+..+++|+.|+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS------IPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS------CCHHHHTTCTTCCEEEEE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc------cChhHhcccCCCcEEeCC
Confidence 777777744 45567777777777777652 223346666677777777766666 542 35556666666666
Q ss_pred Ccc
Q 045186 156 DCK 158 (411)
Q Consensus 156 ~c~ 158 (411)
+|.
T Consensus 185 ~n~ 187 (477)
T 2id5_A 185 HLN 187 (477)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=157.90 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=73.6
Q ss_pred CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccch--hccCCCCCcE
Q 045186 2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQ--IVASMEDLLE 77 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~ 77 (411)
++|++|+|++|.++.++ ..++++++|++|+|++| .+..+|.. +..+++|++|++++| .+..+|. .++.+++|++
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcE
Confidence 45666666666665543 33556666666666653 34444433 455555555555553 3444443 4455555555
Q ss_pred EEccCC-CCCcc-ChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhh-hcCCCCCEe
Q 045186 78 LYLDGT-SITEV-PSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI-SGLLNLKEL 152 (411)
Q Consensus 78 L~L~~~-~i~~l-p~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l-~~l~~L~~L 152 (411)
|++++| .++.+ |..++.+++|+.|++++|.. ..+..+..+++|++|++++|.+.. +|..+ ..+++|+.|
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL------LLEIFVDVTSSVECL 227 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT------HHHHHHHHTTTEEEE
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc------chhhhhhhcccccEE
Confidence 555555 34433 23455555555555555541 112334445555555555555444 44322 234445555
Q ss_pred cccCc
Q 045186 153 ELEDC 157 (411)
Q Consensus 153 ~L~~c 157 (411)
++++|
T Consensus 228 ~L~~n 232 (353)
T 2z80_A 228 ELRDT 232 (353)
T ss_dssp EEESC
T ss_pred ECCCC
Confidence 55444
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=3.1e-16 Score=157.54 Aligned_cols=168 Identities=22% Similarity=0.265 Sum_probs=138.3
Q ss_pred CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L 78 (411)
++++.|+|++|.|+.++ ..|.++++|++|+|++|. +..+ +..+.++++|++|+|++| .+..+|. .+..+++|+.|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 46899999999999775 569999999999999964 5554 467889999999999995 5666765 68899999999
Q ss_pred EccCCCCCccCh-hhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecc
Q 045186 79 YLDGTSITEVPS-SIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELEL 154 (411)
Q Consensus 79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L 154 (411)
+|++|.++.+|. .+..+++|+.|++++|... ....+..+++|+.|+|++|+++. +| .+..+++|+.|+|
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~------~~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE------IP-NLTPLIKLDELDL 214 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS------CC-CCTTCSSCCEEEC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc------cc-ccCCCcccCEEEC
Confidence 999999997776 6889999999999997633 23458889999999999999998 88 5889999999999
Q ss_pred cCccccccc-CCC---CCCCceEEecCCC
Q 045186 155 EDCKRLQSL-PQI---PPNLWLVRANGCS 179 (411)
Q Consensus 155 ~~c~~l~~l-p~l---~~~L~~L~~~~c~ 179 (411)
++|. +..+ |.. .++|+.|++.++.
T Consensus 215 s~N~-l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 215 SGNH-LSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCc-cCccChhhhccCccCCEEECCCCc
Confidence 9985 5544 322 2678888887763
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=1.6e-16 Score=156.89 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=117.5
Q ss_pred CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEE
Q 045186 1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L 78 (411)
+++|++|+|++|.++.++. .++.+++|++|+|++|......|..+..+++|++|+|++| .+..+|.. ++++++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEE
Confidence 3567777777777766654 5667777777777765433233444566677777777764 44555544 3566666666
Q ss_pred EccCCCCCccC-hhhhccCCCCEEecCCCCC-------------------------------------------------
Q 045186 79 YLDGTSITEVP-SSIELLHGLELLNLNNCKN------------------------------------------------- 108 (411)
Q Consensus 79 ~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~------------------------------------------------- 108 (411)
++++|.++.++ ..++.+++|+.|++++|..
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence 66666666443 3355666666666665541
Q ss_pred ------------ChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecccCcccccccCCC---CCCCce
Q 045186 109 ------------LWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELELEDCKRLQSLPQI---PPNLWL 172 (411)
Q Consensus 109 ------------~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~ 172 (411)
.....+..+++|+.|++++|.+.+ + |..+..+++|+.|++++|. ++.+|.. .++|+.
T Consensus 227 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK------IMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKV 299 (390)
T ss_dssp SCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE------EESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCE
T ss_pred cccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC------cChhHccccccCCEEECCCCc-CcccCcccCCCCCCCE
Confidence 111336678899999999999988 5 6788999999999999975 5666543 378999
Q ss_pred EEecCCCCCCccc
Q 045186 173 VRANGCSSLVTLS 185 (411)
Q Consensus 173 L~~~~c~~L~~l~ 185 (411)
|++++| .++.++
T Consensus 300 L~L~~n-~l~~~~ 311 (390)
T 3o6n_A 300 LDLSHN-HLLHVE 311 (390)
T ss_dssp EECCSS-CCCCCG
T ss_pred EECCCC-cceecC
Confidence 999988 455554
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=1.4e-16 Score=151.38 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=142.9
Q ss_pred CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
++|++|+|++|.|+.++ ..+.++++|++|+|++| .+..+|.. ..+++|++|+|++| .+..+|..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 57899999999999774 56999999999999995 67777764 78999999999994 67899998999999999999
Q ss_pred cCCCCCccC-hhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccC
Q 045186 81 DGTSITEVP-SSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELED 156 (411)
Q Consensus 81 ~~~~i~~lp-~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~ 156 (411)
++|.++.+| ..+..+++|+.|++++|. ......+..+++|+.|+|++|+++. +|.. +..+++|+.|+|++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE------LPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC------CCTTTTTTCTTCCEEECCS
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc------cCHHHhcCcCCCCEEECCC
Confidence 999999887 468999999999999998 3444558899999999999999999 8865 57899999999999
Q ss_pred cccccccCCCC---CCCceEEecCCC
Q 045186 157 CKRLQSLPQIP---PNLWLVRANGCS 179 (411)
Q Consensus 157 c~~l~~lp~l~---~~L~~L~~~~c~ 179 (411)
|. ++.+|... .+|+.|++.+++
T Consensus 182 N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 182 NS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred Cc-CCccChhhcccccCCeEEeCCCC
Confidence 75 66776532 467778777654
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=160.43 Aligned_cols=169 Identities=18% Similarity=0.224 Sum_probs=137.8
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L 78 (411)
++|++|+|++|.|+.+|. .++++++|++|+|++| .+..+ |..+..+++|++|++++| .+..+|.. ++++++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEE
Confidence 478999999999998876 6899999999999986 45554 566888999999999995 56667655 7889999999
Q ss_pred EccCCCCCccCh--hhhccCCCCEEecCCCC---CChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEe
Q 045186 79 YLDGTSITEVPS--SIELLHGLELLNLNNCK---NLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKEL 152 (411)
Q Consensus 79 ~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~---~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L 152 (411)
++++|.++.+|. .+..+++|+.|++++|. ...+..+..+++|+.|++++|.+.+ + |..+..+++|+.|
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS------YEPKSLKSIQNVSHL 203 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE------ECTTTTTTCSEEEEE
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc------cCHHHHhccccCCee
Confidence 999999998887 68889999999999984 2223458889999999999999888 5 6788899999999
Q ss_pred cccCcccccccCC----CCCCCceEEecCCC
Q 045186 153 ELEDCKRLQSLPQ----IPPNLWLVRANGCS 179 (411)
Q Consensus 153 ~L~~c~~l~~lp~----l~~~L~~L~~~~c~ 179 (411)
++++|. ++.+|. ..++|+.|+++++.
T Consensus 204 ~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 204 ILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred cCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 999876 455554 24788999998863
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.68 E-value=5.3e-16 Score=153.17 Aligned_cols=167 Identities=13% Similarity=0.189 Sum_probs=137.3
Q ss_pred CCceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 1 MECLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
+++|+.|+++++.++.+|.. +..+++|++|+|++|. +..++ ..+..+++|++|+|++|......|..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 36899999999999999876 6889999999999964 55554 478899999999999976544445678999999999
Q ss_pred EccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186 79 YLDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155 (411)
Q Consensus 79 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~ 155 (411)
++++|.++.+|.. ++.+++|+.|++++|. ...+..+..+++|+.|++++|.++. ++ +..+++|+.|+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~--~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------VD--LSLIPSLFHANVS 194 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB------CC--GGGCTTCSEEECC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc------cc--cccccccceeecc
Confidence 9999999999987 4899999999999997 3334558899999999999999988 65 5678888888888
Q ss_pred CcccccccCCCCCCCceEEecCC
Q 045186 156 DCKRLQSLPQIPPNLWLVRANGC 178 (411)
Q Consensus 156 ~c~~l~~lp~l~~~L~~L~~~~c 178 (411)
+|. +..++ .+++|+.|++.++
T Consensus 195 ~n~-l~~~~-~~~~L~~L~l~~n 215 (390)
T 3o6n_A 195 YNL-LSTLA-IPIAVEELDASHN 215 (390)
T ss_dssp SSC-CSEEE-CCSSCSEEECCSS
T ss_pred ccc-ccccC-CCCcceEEECCCC
Confidence 864 44443 3456777777665
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=3.9e-16 Score=150.83 Aligned_cols=166 Identities=18% Similarity=0.286 Sum_probs=89.1
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
+|+.++++++.++.+|..+. ++|++|+|++|. +..+ |..+.++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 35566666666666665442 466666666643 3333 3355666666666666644333335556666666666666
Q ss_pred CCCCCccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR 159 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~ 159 (411)
+|.++.+|..+. ++|+.|++++|. ......+..+++|+.|++++|.+.. .+..|..+..+ +|+.|++++|.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l-~L~~L~l~~n~- 183 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---SGFEPGAFDGL-KLNYLRISEAK- 183 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---GGSCTTSSCSC-CCSCCBCCSSB-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---CCCCcccccCC-ccCEEECcCCC-
Confidence 666666665544 566666666665 2222335566666666666665542 00123344444 56666666543
Q ss_pred ccccCC-CCCCCceEEecCC
Q 045186 160 LQSLPQ-IPPNLWLVRANGC 178 (411)
Q Consensus 160 l~~lp~-l~~~L~~L~~~~c 178 (411)
++.+|. ++++|++|+++++
T Consensus 184 l~~l~~~~~~~L~~L~l~~n 203 (332)
T 2ft3_A 184 LTGIPKDLPETLNELHLDHN 203 (332)
T ss_dssp CSSCCSSSCSSCSCCBCCSS
T ss_pred CCccCccccCCCCEEECCCC
Confidence 333432 2345555555443
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=2.7e-16 Score=163.88 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=135.3
Q ss_pred CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++++|+|++|.|+.+ |..|+++++|++|+|++|......|..+.++++|++|+|++|......|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4689999999999977 557999999999999997555555788999999999999997666666788999999999999
Q ss_pred cCCCCCcc-ChhhhccCCCCEEecCCCCCCh--hHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCC--Eecc
Q 045186 81 DGTSITEV-PSSIELLHGLELLNLNNCKNLW--TTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLK--ELEL 154 (411)
Q Consensus 81 ~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~--~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~--~L~L 154 (411)
++|.++.+ |..++.+++|++|++++|.... ...+..+++|+.|++++|.+.. + |..++.+++|+ .|++
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY------LSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE------ECHHHHHTTTTCCSEEEEC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc------cChhhhhhhcccceeEEec
Confidence 99999976 5678999999999999998332 2334448999999999999888 6 56788889998 8888
Q ss_pred cCcccccccCCCC--CCCceEEecCCC
Q 045186 155 EDCKRLQSLPQIP--PNLWLVRANGCS 179 (411)
Q Consensus 155 ~~c~~l~~lp~l~--~~L~~L~~~~c~ 179 (411)
++|......|... ..|+.|++.+|.
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred CCCccCccChhHhhhccccccccCCch
Confidence 8876444333322 345566655553
No 46
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=7.3e-16 Score=149.46 Aligned_cols=166 Identities=17% Similarity=0.220 Sum_probs=141.4
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|++++|.++.++. +..+++|++|++++| .+..+| .+..+++|++|++++| .+..+|. +..+++|+.|++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEEC
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeEEEC
Confidence 5789999999999999988 999999999999996 677776 4889999999999995 4666766 889999999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL 160 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l 160 (411)
++|.....+..+..+++|+.|++++|.......+..+++|+.|++++|.+.. ++. +..+++|+.|++++|. +
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~-~~~l~~L~~L~l~~n~-l 211 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED------ISP-LASLTSLHYFTAYVNQ-I 211 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC------CGG-GGGCTTCCEEECCSSC-C
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc------ccc-ccCCCccceeecccCC-C
Confidence 9996665555699999999999999985544448999999999999999998 875 8899999999999975 4
Q ss_pred cccCCC--CCCCceEEecCCC
Q 045186 161 QSLPQI--PPNLWLVRANGCS 179 (411)
Q Consensus 161 ~~lp~l--~~~L~~L~~~~c~ 179 (411)
..++.+ .++|+.|++++|.
T Consensus 212 ~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 212 TDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCCGGGGGCTTCCEEECCSSC
T ss_pred CCCchhhcCCcCCEEEccCCc
Confidence 444433 3789999998874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=3.5e-16 Score=150.92 Aligned_cols=173 Identities=18% Similarity=0.276 Sum_probs=125.6
Q ss_pred CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
+++|++|+|++|.++.+ |..++++++|++|+|++| .++.+|..+. ++|++|++++|......+..++++++|+.|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 57899999999999977 777999999999999995 5778887654 7899999998654444445678888899999
Q ss_pred ccCCCCC---ccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEeccc
Q 045186 80 LDGTSIT---EVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELELE 155 (411)
Q Consensus 80 L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L~ 155 (411)
+++|.++ ..+..+..+++|+.|++++|...... ....++|+.|++++|.+.. + |..+..+++|+.|+++
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-QGLPPSLTELHLDGNKITK------VDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-SSCCTTCSEEECTTSCCCE------ECTGGGTTCTTCCEEECC
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCccccCC-ccccccCCEEECCCCcCCc------cCHHHhcCCCCCCEEECC
Confidence 9888886 44567788888888888888622110 1112678888888887777 5 4567777888888887
Q ss_pred CcccccccCC--C--CCCCceEEecCCCCCCccc
Q 045186 156 DCKRLQSLPQ--I--PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 156 ~c~~l~~lp~--l--~~~L~~L~~~~c~~L~~l~ 185 (411)
+|. ++.++. + .++|+.|++++| .+..++
T Consensus 225 ~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp 256 (330)
T 1xku_A 225 FNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVP 256 (330)
T ss_dssp SSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred CCc-CceeChhhccCCCCCCEEECCCC-cCccCC
Confidence 765 333332 1 256777777776 344444
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.4e-16 Score=166.27 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=139.4
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
|++|+.|++++|.|..+|. ++.+++|+.|+|++| .+..+|. +..+++|+.|+|++| .+..+| .++.+++|+.|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 4678999999999998874 899999999999996 5666766 889999999999996 566666 6888999999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL 160 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l 160 (411)
++|.+..++ .+..+++|+.|+|++|.......+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|. +
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~------~~~-l~~l~~L~~L~Ls~N~-i 187 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD------IVP-LAGLTKLQNLYLSKNH-I 187 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC------CGG-GTTCTTCCEEECCSSC-C
T ss_pred cCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC------chh-hccCCCCCEEECcCCC-C
Confidence 999999875 588999999999999985444668899999999999999998 765 8999999999999974 5
Q ss_pred cccCCCC--CCCceEEecCCC
Q 045186 161 QSLPQIP--PNLWLVRANGCS 179 (411)
Q Consensus 161 ~~lp~l~--~~L~~L~~~~c~ 179 (411)
..+|.+. ++|+.|++.+|.
T Consensus 188 ~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 188 SDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CBCGGGTTCTTCSEEECCSEE
T ss_pred CCChHHccCCCCCEEEccCCc
Confidence 6666543 678888888763
No 49
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=4.2e-17 Score=157.40 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=108.3
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
++++.|++++|.+...+..+..+++|++|+|++|..... +|..+..+++|++|+|++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456777777776665555566677777777777643222 5666667777777777776544456666667777777777
Q ss_pred cCC-CCC--ccChhhhccCCCCEEecCCCCCCh----hHHHhhcc-ccceeecCCCC--ccccccccccchhhhcCCCCC
Q 045186 81 DGT-SIT--EVPSSIELLHGLELLNLNNCKNLW----TTIIYIMA-FARSFQFDGKE--FISCSFDVVFSVSISGLLNLK 150 (411)
Q Consensus 81 ~~~-~i~--~lp~~i~~l~~L~~L~L~~~~~~~----~~~l~~l~-~L~~L~Ls~n~--~~~~~~~~~lp~~l~~l~~L~ 150 (411)
++| .++ .++..+..+++|+.|++++|..+. ...+..++ +|++|++++|. ++. ..+|..+..+++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~----~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK----SDLSTLVRRCPNLV 225 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH----HHHHHHHHHCTTCS
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH----HHHHHHHhhCCCCC
Confidence 777 566 356666677777777777773222 23366667 77777777773 321 12566666677777
Q ss_pred EecccCcccccc--cCCC--CCCCceEEecCCC
Q 045186 151 ELELEDCKRLQS--LPQI--PPNLWLVRANGCS 179 (411)
Q Consensus 151 ~L~L~~c~~l~~--lp~l--~~~L~~L~~~~c~ 179 (411)
.|++++|..++. ++.+ .++|+.|++++|.
T Consensus 226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 777777664332 1111 1567777777665
No 50
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=159.06 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=147.6
Q ss_pred CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
+++|++|+|++|.|+.+ |..|+++++|++|+|++| .+..+|. .+.++++|++|+|++|......|..+..+++|+.|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 57899999999999977 667999999999999995 5677765 46789999999999976666667788999999999
Q ss_pred EccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecc
Q 045186 79 YLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELEL 154 (411)
Q Consensus 79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L 154 (411)
++++|.++.+ |..+..+++|+.|++++|. ......+..+++|+.|+|++|.+.. ++ ..+..+++|+.|++
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~------~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA------IRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE------ECTTCSCSCTTCCEEEE
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE------eChhhcccCcccceeeC
Confidence 9999999955 5578899999999999997 3445568999999999999999988 65 46888999999999
Q ss_pred cCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186 155 EDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 155 ~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~ 185 (411)
++|..+..+|.. ..+|+.|++++|. ++.++
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 240 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVP 240 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCC
T ss_pred CCCccccccCcccccCccccEEECcCCc-ccccC
Confidence 999988888753 2589999998763 44443
No 51
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=150.54 Aligned_cols=170 Identities=16% Similarity=0.123 Sum_probs=115.9
Q ss_pred CceeEEEEeCCCCC-cccccc--cCCCCccEEEEecCCCCcccc----cccCCCCCccEEEeeCCCCCcccchhccCCCC
Q 045186 2 ECLRELLLDGTDIK-ELPVSI--ELLSGLVQLSLKGCKNLLSLP----IAISSLKCLRNLKLSGCSKLKKFPQIVASMED 74 (411)
Q Consensus 2 ~~L~~L~L~~~~l~-~lp~si--~~l~~L~~L~L~~c~~l~~lp----~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~ 74 (411)
++|++|+|++|.+. ..|..+ +.+++|++|+|++|......| ..+..+++|++|+|++|......|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 45788888888877 445555 778888888888865443322 23446778888888886654445567777888
Q ss_pred CcEEEccCCCCCc---cCh--hhhccCCCCEEecCCCCCCh-hH----HHhhccccceeecCCCCcccccccccc-chhh
Q 045186 75 LLELYLDGTSITE---VPS--SIELLHGLELLNLNNCKNLW-TT----IIYIMAFARSFQFDGKEFISCSFDVVF-SVSI 143 (411)
Q Consensus 75 L~~L~L~~~~i~~---lp~--~i~~l~~L~~L~L~~~~~~~-~~----~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l 143 (411)
|++|+|++|.+.. ++. .++.+++|+.|++++|.... +. .++.+++|++|+|++|.+.+ + |..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~------~~p~~~ 244 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA------TVNPSA 244 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC------CCCSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc------cchhhH
Confidence 8888888887653 322 23677888888888887432 22 25677888888888888877 5 6666
Q ss_pred hcC---CCCCEecccCcccccccCC-CCCCCceEEecCC
Q 045186 144 SGL---LNLKELELEDCKRLQSLPQ-IPPNLWLVRANGC 178 (411)
Q Consensus 144 ~~l---~~L~~L~L~~c~~l~~lp~-l~~~L~~L~~~~c 178 (411)
..+ ++|+.|+|++|. ++.+|. ++++|+.|+++++
T Consensus 245 ~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N 282 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN 282 (310)
T ss_dssp SSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC
T ss_pred HhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC
Confidence 555 588888888765 446654 4567777777765
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=3.7e-16 Score=163.18 Aligned_cols=176 Identities=19% Similarity=0.175 Sum_probs=135.7
Q ss_pred CCceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 1 MECLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
+++|++|+|++|.|+.+|+. ++++++|++|+|++| .+..+|.. +..+++|++|+|++|...+..|..++.+++|+.|
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 46788888888888877654 688888888888885 56666665 4778888888888865545455567778888888
Q ss_pred EccCCCCCccC------------------------------------------------------------hhhhccCCC
Q 045186 79 YLDGTSITEVP------------------------------------------------------------SSIELLHGL 98 (411)
Q Consensus 79 ~L~~~~i~~lp------------------------------------------------------------~~i~~l~~L 98 (411)
+|++|.++.++ ..++.+++|
T Consensus 177 ~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L 256 (597)
T 3oja_B 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGL 256 (597)
T ss_dssp ECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTC
T ss_pred ECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCC
Confidence 88877766432 236677889
Q ss_pred CEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC---CCCCceE
Q 045186 99 ELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI---PPNLWLV 173 (411)
Q Consensus 99 ~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L 173 (411)
+.|+|++|.. ..+..++.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|. +..+|.. .++|+.|
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA------LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENL 329 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE------EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEE
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC------CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEE
Confidence 9999999873 345668999999999999999999 99888889999999999985 5566642 2789999
Q ss_pred EecCCCCCCccc
Q 045186 174 RANGCSSLVTLS 185 (411)
Q Consensus 174 ~~~~c~~L~~l~ 185 (411)
++++|. +..++
T Consensus 330 ~L~~N~-l~~~~ 340 (597)
T 3oja_B 330 YLDHNS-IVTLK 340 (597)
T ss_dssp ECCSSC-CCCCC
T ss_pred ECCCCC-CCCcC
Confidence 999875 44444
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=3.1e-16 Score=157.61 Aligned_cols=151 Identities=19% Similarity=0.143 Sum_probs=115.6
Q ss_pred CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
++|++|+|++|.|+.+ |..++++++|++|+|++|.....+ |..+..+++|++|+|++|...+..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5789999999999876 667899999999999997665555 45688899999999999765555678888999999999
Q ss_pred ccCCCCCc-cChh--hhccCCCCEEecCCCCC--Chh-HHHhhccccceeecCCCCcccccccccc-chhhhcC--CCCC
Q 045186 80 LDGTSITE-VPSS--IELLHGLELLNLNNCKN--LWT-TIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGL--LNLK 150 (411)
Q Consensus 80 L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~--~~~-~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l--~~L~ 150 (411)
+++|.++. +|.. ++.+++|+.|++++|.. ..+ ..+..+++|++|++++|.+.+ + |..+..+ .+|+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS------ICEEDLLNFQGKHFT 183 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC------CCTTTSGGGTTCEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc------cChhhhhcccccccc
Confidence 99999884 4544 88899999999999873 223 337889999999999998877 4 3444443 4555
Q ss_pred EecccCcc
Q 045186 151 ELELEDCK 158 (411)
Q Consensus 151 ~L~L~~c~ 158 (411)
.|++++|.
T Consensus 184 ~L~l~~n~ 191 (455)
T 3v47_A 184 LLRLSSIT 191 (455)
T ss_dssp EEECTTCB
T ss_pred ccccccCc
Confidence 55555543
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=4e-16 Score=162.89 Aligned_cols=177 Identities=14% Similarity=0.162 Sum_probs=143.2
Q ss_pred CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEE
Q 045186 1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L 78 (411)
+++|++|+|++|.|+.+++ .|+++++|++|+|++|......|..++.+++|++|+|++| .+..+|.. ++++++|++|
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEE
Confidence 5789999999999998765 7999999999999997544444455789999999999996 56677765 5899999999
Q ss_pred EccCCCCCccCh-hhhccCCCCEEecCCCCCCh-----------------------------------------------
Q 045186 79 YLDGTSITEVPS-SIELLHGLELLNLNNCKNLW----------------------------------------------- 110 (411)
Q Consensus 79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~----------------------------------------------- 110 (411)
+|++|.++.++. .++.+++|+.|++++|....
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 999999996654 68999999999999886211
Q ss_pred --------------hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCCC---CCCCceE
Q 045186 111 --------------TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQI---PPNLWLV 173 (411)
Q Consensus 111 --------------~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L 173 (411)
...++.+++|+.|+|++|.+.+ ..|..+..+++|+.|+|++|. +..+|.. .++|+.|
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-----IMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVL 306 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-----EESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEE
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC-----CCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEE
Confidence 1236678899999999999988 236789999999999999975 5666653 3789999
Q ss_pred EecCCCCCCccc
Q 045186 174 RANGCSSLVTLS 185 (411)
Q Consensus 174 ~~~~c~~L~~l~ 185 (411)
++++|. +..++
T Consensus 307 ~Ls~N~-l~~i~ 317 (597)
T 3oja_B 307 DLSHNH-LLHVE 317 (597)
T ss_dssp ECCSSC-CCCCG
T ss_pred ECCCCC-CCccC
Confidence 999874 44454
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=7.9e-17 Score=174.31 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=144.3
Q ss_pred CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCc--ccccccCCCC-------CccEEEeeCCCCCcccch--h
Q 045186 1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLL--SLPIAISSLK-------CLRNLKLSGCSKLKKFPQ--I 68 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~--~lp~~i~~l~-------~L~~L~Ls~c~~l~~lp~--~ 68 (411)
|++|++|+|++|.+. .+|..++++++|+.|+|++|..+. .+|..++.++ +|+.|+|++|. +..+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh
Confidence 578999999999866 889999999999999999986354 5887666555 99999999965 559998 8
Q ss_pred ccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccc-cceeecCCCCccccccccccchhhhcC
Q 045186 69 VASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAF-ARSFQFDGKEFISCSFDVVFSVSISGL 146 (411)
Q Consensus 69 l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~-L~~L~Ls~n~~~~~~~~~~lp~~l~~l 146 (411)
++++++|+.|+|++|.++.+| .++.+++|+.|+|++|... .+..+..+++ |+.|+|++|.+.. +|..+..+
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~------lp~~~~~~ 641 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY------IPNIFNAK 641 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS------CCSCCCTT
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc------Cchhhhcc
Confidence 999999999999999999999 8999999999999999833 3344888888 9999999999998 99877766
Q ss_pred CC--CCEecccCcccccccCCCC--------CCCceEEecCCC
Q 045186 147 LN--LKELELEDCKRLQSLPQIP--------PNLWLVRANGCS 179 (411)
Q Consensus 147 ~~--L~~L~L~~c~~l~~lp~l~--------~~L~~L~~~~c~ 179 (411)
+. |+.|+|++|.....+|.++ ++|+.|++++|.
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 54 9999999988766666554 378888887763
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=4.8e-16 Score=162.01 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=122.2
Q ss_pred ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
+|++|++++|.+..++.. ++++++|++|++++| .+..+|..+..+++|++|++++|......|..++.+++|+.|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 577888888888877654 778888888888885 566788778888888888888865444446677778888888888
Q ss_pred CCCCC-ccChh-hhccCCCCEEecCCCCCCh----hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186 82 GTSIT-EVPSS-IELLHGLELLNLNNCKNLW----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155 (411)
Q Consensus 82 ~~~i~-~lp~~-i~~l~~L~~L~L~~~~~~~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~ 155 (411)
+|.+. .+|.. ++.+++|+.|++++|.... +..+..+++|+.|++++|.+.+ ..|..+..+++|+.|+++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-----LKTEAFKECPQLELLDLA 408 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-----ECTTTTTTCTTCSEEECT
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-----CCHHHhcCCccCCeEECC
Confidence 88776 56554 7778888888888877332 3347777888888888887776 124567777888888888
Q ss_pred CcccccccCC----CCCCCceEEecCCC
Q 045186 156 DCKRLQSLPQ----IPPNLWLVRANGCS 179 (411)
Q Consensus 156 ~c~~l~~lp~----l~~~L~~L~~~~c~ 179 (411)
+|......|. -.++|+.|++++|.
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCc
Confidence 7764433332 12567777777764
No 57
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4.8e-16 Score=145.67 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=110.1
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
++..++++++.++.++ .+..+++|+.|++++| .+..+| .+..+++|++|+|++| .+..+|. ++.+++|+.|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 3445566677777766 4677777888888775 566666 4667777888888774 4566665 77777888888888
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS 162 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ 162 (411)
|.++.+|.... ++|+.|++++|.......+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|. +..
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~------~~-~l~~l~~L~~L~L~~N~-i~~ 164 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS------IV-MLGFLSKLEVLDLHGNE-ITN 164 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB------CG-GGGGCTTCCEEECTTSC-CCB
T ss_pred CccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC------Ch-HHccCCCCCEEECCCCc-Ccc
Confidence 87777765333 7788888887774433457777788888888887777 66 57777788888887764 444
Q ss_pred cCCCC--CCCceEEecCC
Q 045186 163 LPQIP--PNLWLVRANGC 178 (411)
Q Consensus 163 lp~l~--~~L~~L~~~~c 178 (411)
++.+. ++|+.|+++++
T Consensus 165 ~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 165 TGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CTTSTTCCCCCEEEEEEE
T ss_pred hHHhccCCCCCEEeCCCC
Confidence 43322 45666666554
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=8.5e-16 Score=154.42 Aligned_cols=107 Identities=17% Similarity=0.086 Sum_probs=79.6
Q ss_pred CCCcEEEccCCCCC-ccChhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCC
Q 045186 73 EDLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLN 148 (411)
Q Consensus 73 ~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~ 148 (411)
++|+.|++++|.++ ..|..++.+++|+.|++++|.. ..+..+..+++|+.|+|++|.+.+ + |..+..+++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~ 348 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS------IDSRMFENLDK 348 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE------ECGGGGTTCTT
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC------cChhHhcCccc
Confidence 46777777777777 4566788899999999999873 234458888999999999998887 6 567788999
Q ss_pred CCEecccCcccccccCCC---CCCCceEEecCCCCCCcccC
Q 045186 149 LKELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 149 L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~~ 186 (411)
|+.|+|++|......|.. .++|++|+++++ .++.++.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH
Confidence 999999988643333432 278888998876 3555543
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=2.2e-15 Score=163.41 Aligned_cols=152 Identities=21% Similarity=0.218 Sum_probs=122.0
Q ss_pred CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
++|++|+|++|.|+.+ |.+++++++|++|+|++|..+..+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 6799999999999976 567999999999999998777777 67789999999999999766566688899999999999
Q ss_pred ccCCCCCc-cChh--hhccCCCCEEecCCCCCC--h-hHHHhhccccceeecCCCCccccccccccchhhhcC--CCCCE
Q 045186 80 LDGTSITE-VPSS--IELLHGLELLNLNNCKNL--W-TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGL--LNLKE 151 (411)
Q Consensus 80 L~~~~i~~-lp~~--i~~l~~L~~L~L~~~~~~--~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l--~~L~~ 151 (411)
|++|.++. +|.. ++.+++|+.|++++|... . ...++.+++|++|+|++|.+.. ..|..+..+ ++|+.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-----~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-----VCEHELEPLQGKTLSF 178 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC-----CCSGGGHHHHHCSSCC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe-----eCHHHcccccCCccce
Confidence 99999984 6655 889999999999999732 2 2458899999999999998876 123444444 55555
Q ss_pred ecccCcc
Q 045186 152 LELEDCK 158 (411)
Q Consensus 152 L~L~~c~ 158 (411)
|++++|.
T Consensus 179 L~L~~n~ 185 (844)
T 3j0a_A 179 FSLAANS 185 (844)
T ss_dssp CEECCSB
T ss_pred EECCCCc
Confidence 5555554
No 60
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=9.2e-16 Score=145.84 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=128.1
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|+|++|.++.++. +.++++|++|+|++| .+..+|. +..+++|++|++++| .+..++ .++.+++|+.|++
T Consensus 67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l 141 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYL 141 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEEC
T ss_pred CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEc
Confidence 5789999999999999888 999999999999996 5777765 889999999999996 566664 5788999999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
++|.++.+ ..++.+++|+.|++++|.......+..+++|+.|++++|.++. +|. +..+++|+.|++++|+
T Consensus 142 ~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~------l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD------LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB------CGG-GTTCTTCSEEEEEEEE
T ss_pred cCCcCCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC------Chh-hccCCCCCEEECcCCc
Confidence 99999988 5789999999999999984333338999999999999999999 874 8999999999999976
No 61
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=2e-16 Score=164.88 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=138.7
Q ss_pred CCceeEEEEeCCCCC-cccccccCCCCccEEEEecCCCCccc---ccccCCCCCccEEEeeCCCCCcccchhccCCCCCc
Q 045186 1 MECLRELLLDGTDIK-ELPVSIELLSGLVQLSLKGCKNLLSL---PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLL 76 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~ 76 (411)
+++|++|++++|... .+ .++.+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|..++.+++|+
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~ 402 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQ 402 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCC
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCC
Confidence 578999999999544 33 47889999999999964 4443 6778899999999999964 777888899999999
Q ss_pred EEEccCCCCCccC--hhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEe
Q 045186 77 ELYLDGTSITEVP--SSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKEL 152 (411)
Q Consensus 77 ~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L 152 (411)
.|++++|.+..++ ..+..+++|+.|++++|.. ..+..++.+++|+.|++++|.+.+ ..+|..+..+++|+.|
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD----NTLSNVFANTTNLTFL 478 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEE
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC----cchHHhhccCCCCCEE
Confidence 9999999998654 4788999999999999983 344568899999999999998875 1157788999999999
Q ss_pred cccCcccccccCCC---CCCCceEEecCCCC
Q 045186 153 ELEDCKRLQSLPQI---PPNLWLVRANGCSS 180 (411)
Q Consensus 153 ~L~~c~~l~~lp~l---~~~L~~L~~~~c~~ 180 (411)
++++|......|.. .++|+.|++++|.-
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 99998654444432 37889999988843
No 62
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=1.1e-15 Score=139.43 Aligned_cols=145 Identities=23% Similarity=0.311 Sum_probs=121.9
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCC
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGT 83 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~ 83 (411)
+.+++++++++.+|..+. ++|+.|+|++| .+..+|. .+..+++|+.|+|++|......|..+.++++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 467888899999998664 78999999995 5666654 6888999999999996554445788999999999999999
Q ss_pred CCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hhhcCCCCCEecccCcc
Q 045186 84 SITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SISGLLNLKELELEDCK 158 (411)
Q Consensus 84 ~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l~~l~~L~~L~L~~c~ 158 (411)
.|+.+|.. +..+++|+.|+|++|. ...+..+..+++|+.|+|++|.+++ ++. .+..+++|+.|+|++|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT------IAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE------ECHHHHhCCCCCCEEEeCCCC
Confidence 99988876 5789999999999998 3445568899999999999999998 774 57888999999999876
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=150.10 Aligned_cols=169 Identities=16% Similarity=0.088 Sum_probs=131.3
Q ss_pred CCceeEEEEeCCCCCcc-c----ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcc--cc--hhccC
Q 045186 1 MECLRELLLDGTDIKEL-P----VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKK--FP--QIVAS 71 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p----~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~--lp--~~l~~ 71 (411)
+++|++|+|++|.+... + ..+..+++|++|+|++|......|..+..+++|++|+|++|...+. ++ ..++.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 46899999999999842 2 2356799999999999765455557788999999999999765542 33 23468
Q ss_pred CCCCcEEEccCCCCCccChh----hhccCCCCEEecCCCCCCh--hHHHhhc---cccceeecCCCCccccccccccchh
Q 045186 72 MEDLLELYLDGTSITEVPSS----IELLHGLELLNLNNCKNLW--TTIIYIM---AFARSFQFDGKEFISCSFDVVFSVS 142 (411)
Q Consensus 72 l~~L~~L~L~~~~i~~lp~~----i~~l~~L~~L~L~~~~~~~--~~~l~~l---~~L~~L~Ls~n~~~~~~~~~~lp~~ 142 (411)
+++|++|+|++|.++.++.. ++.+++|+.|+|++|.... +..+..+ ++|++|+|++|.++. +|..
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~------lp~~ 269 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ------VPKG 269 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS------CCSC
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc------hhhh
Confidence 99999999999999877653 5788999999999998322 3334444 799999999999999 9987
Q ss_pred hhcCCCCCEecccCcccccccCC--CCCCCceEEecCC
Q 045186 143 ISGLLNLKELELEDCKRLQSLPQ--IPPNLWLVRANGC 178 (411)
Q Consensus 143 l~~l~~L~~L~L~~c~~l~~lp~--l~~~L~~L~~~~c 178 (411)
+. ++|+.|+|++|+ ++.+|. ..++|+.|+++++
T Consensus 270 ~~--~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 270 LP--AKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CC--SCCSCEECCSCC-CCSCCCTTSCCCCSCEECSST
T ss_pred hc--CCCCEEECCCCc-CCCCchhhhCCCccEEECcCC
Confidence 74 899999999975 555543 2366777777664
No 64
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=1.6e-16 Score=148.85 Aligned_cols=144 Identities=20% Similarity=0.326 Sum_probs=126.5
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|++++|.|+.+| .++.+++|+.|+|++| .+..+|. +..+++|++|+|++| .++.+|.... ++|+.|++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence 468999999999999998 5999999999999995 6777877 889999999999995 5777776444 89999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
++|.++.++ .+..+++|+.|++++|.......+..+++|+.|++++|.+.. + ..+..+++|+.|++++|+
T Consensus 114 ~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~------~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 DNNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN------T-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB------C-TTSTTCCCCCEEEEEEEE
T ss_pred cCCccCCCh-hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc------h-HHhccCCCCCEEeCCCCc
Confidence 999999886 589999999999999984444568899999999999999998 7 578899999999999976
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=153.98 Aligned_cols=168 Identities=16% Similarity=0.162 Sum_probs=117.0
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCc--ccchhccCCCCCcEEEc
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK--KFPQIVASMEDLLELYL 80 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L 80 (411)
+|+.|++++|.+..++. ...+++|++|++++|.....+|..+..+++|++|++++|...+ .+|..++.+++|+.|++
T Consensus 303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 35556666655544331 2577888888888876555577778888888888888865443 55667788888888888
Q ss_pred cCCCCCc-cChh-hhccCCCCEEecCCCCCChhHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186 81 DGTSITE-VPSS-IELLHGLELLNLNNCKNLWTTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157 (411)
Q Consensus 81 ~~~~i~~-lp~~-i~~l~~L~~L~L~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c 157 (411)
++|.++. +|.. +..+++|+.|++++|.... .....+ ++|+.|++++|.++. +|..+..+++|+.|++++|
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~L~~L~Ls~N~l~~------ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD-TIFRCLPPRIKVLDLHSNKIKS------IPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG-GGGGSCCTTCCEEECCSSCCCC------CCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCc-chhhhhcccCCEEECCCCcccc------cchhhhcCCCCCEEECCCC
Confidence 8888885 7765 6677888888888886322 112222 688888888888887 8887778888888888886
Q ss_pred ccccccCCC----CCCCceEEecCCC
Q 045186 158 KRLQSLPQI----PPNLWLVRANGCS 179 (411)
Q Consensus 158 ~~l~~lp~l----~~~L~~L~~~~c~ 179 (411)
+ ++.+|.. .++|+.|++++++
T Consensus 455 ~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 455 Q-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred c-CCccCHHHhccCCcccEEECcCCC
Confidence 4 5566652 2456666666553
No 66
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.8e-16 Score=151.55 Aligned_cols=173 Identities=22% Similarity=0.235 Sum_probs=134.5
Q ss_pred CCceeEEEEeCCCCCc--ccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCc--ccchhccCCCCCc
Q 045186 1 MECLRELLLDGTDIKE--LPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK--KFPQIVASMEDLL 76 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~--lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~ 76 (411)
+++|++|+|++|.+.. +|..+..+++|++|+|++|......|..+..+++|++|+|++|..++ .++..++.+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4688999999988873 77778889999999999876544677778889999999999986666 4777788889999
Q ss_pred EEEccCC-CCCc--cChhhhccC-CCCEEecCCCC-CCh----hHHHhhccccceeecCCCC-ccccccccccchhhhcC
Q 045186 77 ELYLDGT-SITE--VPSSIELLH-GLELLNLNNCK-NLW----TTIIYIMAFARSFQFDGKE-FISCSFDVVFSVSISGL 146 (411)
Q Consensus 77 ~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~~~~-~~~----~~~l~~l~~L~~L~Ls~n~-~~~~~~~~~lp~~l~~l 146 (411)
+|++++| .++. ++..+..++ +|+.|++++|. ... +..+..+++|+.|++++|. ++. ..+..+..+
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~l~~l 246 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-----DCFQEFFQL 246 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-----GGGGGGGGC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-----HHHHHHhCC
Confidence 9999999 8883 677788888 99999999985 222 3347788999999999998 443 256678888
Q ss_pred CCCCEecccCccccccc--CCC--CCCCceEEecCC
Q 045186 147 LNLKELELEDCKRLQSL--PQI--PPNLWLVRANGC 178 (411)
Q Consensus 147 ~~L~~L~L~~c~~l~~l--p~l--~~~L~~L~~~~c 178 (411)
++|+.|++++|..+... ..+ .++|+.|++.+|
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99999999998644321 111 367888888888
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.64 E-value=3.7e-15 Score=143.93 Aligned_cols=164 Identities=20% Similarity=0.214 Sum_probs=132.9
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
++|++|+|++|.|+.+++ .++++++|++|+|++|......|..+..+++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 579999999999998854 6999999999999997544444788999999999999995 5778887765 89999999
Q ss_pred cCCCCCccChh-hhccCCCCEEecCCCCCC----hhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186 81 DGTSITEVPSS-IELLHGLELLNLNNCKNL----WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155 (411)
Q Consensus 81 ~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~----~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~ 155 (411)
++|.++.+|.. +..+++|+.|++++|... .+..+..+ +|+.|++++|.+.. +|..+. ++|+.|+++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~------l~~~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG------IPKDLP--ETLNELHLD 201 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS------CCSSSC--SSCSCCBCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc------cCcccc--CCCCEEECC
Confidence 99999988764 889999999999999842 33446666 99999999999999 987654 799999999
Q ss_pred CcccccccC-C-C--CCCCceEEecCC
Q 045186 156 DCKRLQSLP-Q-I--PPNLWLVRANGC 178 (411)
Q Consensus 156 ~c~~l~~lp-~-l--~~~L~~L~~~~c 178 (411)
+|. +..++ . + .++|+.|+++++
T Consensus 202 ~n~-i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 202 HNK-IQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp SSC-CCCCCTTSSTTCTTCSCCBCCSS
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCC
Confidence 975 44443 2 1 256777777765
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=5.7e-16 Score=157.92 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=131.2
Q ss_pred CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh------------
Q 045186 2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI------------ 68 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~------------ 68 (411)
++|++|+|++|.|..++ ..++.+++|++|+|++|. +..+++ +..+++|++|+|++|. +..+|..
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCc
Confidence 48999999999999775 579999999999999964 554444 8888888888888853 3333311
Q ss_pred -----ccCCCCCcEEEccCCCCCcc-ChhhhccCCCCEEecCCCCCC--hhHHH-hhccccceeecCCCCcccccccccc
Q 045186 69 -----VASMEDLLELYLDGTSITEV-PSSIELLHGLELLNLNNCKNL--WTTII-YIMAFARSFQFDGKEFISCSFDVVF 139 (411)
Q Consensus 69 -----l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~--~~~~l-~~l~~L~~L~Ls~n~~~~~~~~~~l 139 (411)
...+++|+.|+|++|.++.+ |..++.+++|+.|+|++|... .+..+ ..+++|+.|+|++|.+++ +
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~------~ 184 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD------V 184 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE------E
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc------c
Confidence 12467899999999999965 557889999999999999832 33344 478999999999999998 7
Q ss_pred chhhhcCCCCCEecccCcccccccCC-C--CCCCceEEecCCCCCCcccC
Q 045186 140 SVSISGLLNLKELELEDCKRLQSLPQ-I--PPNLWLVRANGCSSLVTLSG 186 (411)
Q Consensus 140 p~~l~~l~~L~~L~L~~c~~l~~lp~-l--~~~L~~L~~~~c~~L~~l~~ 186 (411)
|. ...+++|+.|+|++|. +..+|. + .++|+.|+++++. +..+|.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~ 231 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEK 231 (487)
T ss_dssp EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECT
T ss_pred cc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccch
Confidence 64 4468999999999975 555543 2 2678999998863 455543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=1.1e-15 Score=146.92 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=126.7
Q ss_pred CceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-------------
Q 045186 2 ECLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ------------- 67 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~------------- 67 (411)
++|++|+|++|.|+.++ ..++++++|++|+|++| .+..++. +..+++|++|++++|. +..+|.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN 110 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCc-cccccCCCCcCEEECCCCc
Confidence 57899999999988775 46888999999999986 4554544 7788888888888753 332221
Q ss_pred ----hccCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCCCCCh--hHH-HhhccccceeecCCCCcccccccccc
Q 045186 68 ----IVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCKNLW--TTI-IYIMAFARSFQFDGKEFISCSFDVVF 139 (411)
Q Consensus 68 ----~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~-l~~l~~L~~L~Ls~n~~~~~~~~~~l 139 (411)
....+++|+.|++++|.++.++. .++.+++|+.|++++|.... ... ...+++|++|+|++|.++. +
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~------~ 184 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD------V 184 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE------E
T ss_pred cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc------c
Confidence 01246789999999999997654 68889999999999987332 233 4578999999999999888 7
Q ss_pred chhhhcCCCCCEecccCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186 140 SVSISGLLNLKELELEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 140 p~~l~~l~~L~~L~L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~ 185 (411)
|. ...+++|+.|+|++|. ++.+|.. .++|+.|+++++ .++.++
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~ 230 (317)
T 3o53_A 185 KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIE 230 (317)
T ss_dssp EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEEC
T ss_pred cc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchh
Confidence 64 3458899999999875 5555432 367888888887 455555
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1e-15 Score=155.97 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=91.5
Q ss_pred cccccccCCC----CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh
Q 045186 16 ELPVSIELLS----GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS 91 (411)
Q Consensus 16 ~lp~si~~l~----~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~ 91 (411)
.+|..+..+. +|+.|+|++|......|..+..+++|++|+|++|. +...++ ++.+++|+.|+|++|.++.+|..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCcCCCCCCC
Confidence 5666655554 89999999975444446789999999999999965 444444 88899999999999988766532
Q ss_pred hhccCCCCEEecCCCCC-----------------------ChhHHHhhccccceeecCCCCccccccccccchhhh-cCC
Q 045186 92 IELLHGLELLNLNNCKN-----------------------LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSIS-GLL 147 (411)
Q Consensus 92 i~~l~~L~~L~L~~~~~-----------------------~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~-~l~ 147 (411)
++|+.|++++|.. ..+..++.+++|+.|+|++|.+++ ..|..+. .++
T Consensus 99 ----~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~~l~ 169 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSD 169 (487)
T ss_dssp ----TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-----EEGGGGGGGTT
T ss_pred ----CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-----cChHHHhhhCC
Confidence 4555555555541 112234445555555555555544 1223332 455
Q ss_pred CCCEecccCcccccccCCC--CCCCceEEecCC
Q 045186 148 NLKELELEDCKRLQSLPQI--PPNLWLVRANGC 178 (411)
Q Consensus 148 ~L~~L~L~~c~~l~~lp~l--~~~L~~L~~~~c 178 (411)
+|+.|+|++|. ++.+|.. .++|+.|+++++
T Consensus 170 ~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 170 TLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN 201 (487)
T ss_dssp TCCEEECTTSC-CCEEECCCCCTTCCEEECCSS
T ss_pred cccEEecCCCc-cccccccccCCCCCEEECCCC
Confidence 55555555543 3333322 244555555444
No 71
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=137.57 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=118.0
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-c-cccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEcc
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-P-IAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLD 81 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~ 81 (411)
+.++++++.++.+|..+. ..+++|+|++| .+..+ | ..+..+++|++|+|++|. +..++ ..++.+++|++|+|+
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECC
Confidence 478899999999998664 45789999995 56665 3 336789999999999954 55555 478899999999999
Q ss_pred CCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCEecccCc
Q 045186 82 GTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKELELEDC 157 (411)
Q Consensus 82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~L~L~~c 157 (411)
+|.++.++.. +..+++|+.|+|++|. ...+..+..+++|+.|+|++|.+++ + |..+..+++|+.|+|++|
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT------VAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC------BCTTTTTTCTTCCEEECCSC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE------ECHHHhcCCCCCCEEEecCc
Confidence 9999977764 8889999999999998 3345568889999999999999988 6 677888999999999987
Q ss_pred c
Q 045186 158 K 158 (411)
Q Consensus 158 ~ 158 (411)
+
T Consensus 164 ~ 164 (220)
T 2v70_A 164 P 164 (220)
T ss_dssp C
T ss_pred C
Confidence 6
No 72
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.8e-15 Score=136.18 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=120.8
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccC
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDG 82 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~ 82 (411)
+.++.+++.++.+|..+ .++|++|+|++| .+..+|. .+..+++|++|++++| .++.+|. .+..+++|++|+|++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 45677788888888654 468999999986 4555554 4678899999999985 4556654 467889999999999
Q ss_pred CCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCcc
Q 045186 83 TSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCK 158 (411)
Q Consensus 83 ~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c~ 158 (411)
|.++.+|.. +..+++|+.|++++|. ......+..+++|+.|+|++|.+++ +|.. +..+++|+.|++++|+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS------VPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce------eCHHHhccCCCccEEEecCCC
Confidence 999877765 6788999999999887 3334447888999999999999888 7754 6888999999999986
Q ss_pred cccccCCCCCCCceEEecCC
Q 045186 159 RLQSLPQIPPNLWLVRANGC 178 (411)
Q Consensus 159 ~l~~lp~l~~~L~~L~~~~c 178 (411)
..... +.|++|++..+
T Consensus 160 ~~~~~----~~l~~L~~~~n 175 (208)
T 2o6s_A 160 WDCTC----PGIRYLSEWIN 175 (208)
T ss_dssp BCCCT----TTTHHHHHHHH
T ss_pred eecCC----CCHHHHHHHHH
Confidence 54433 34555554443
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=5.9e-15 Score=149.30 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=131.4
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus 176 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l 250 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDL 250 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEEC
T ss_pred CCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCc-cccccc-ccccCCCCEEECCCCC-cccch-hhhcCCCCCEEEC
Confidence 4689999999999888765 8889999999999864 454544 6778899999999864 55554 4677889999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL 160 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l 160 (411)
++|.++.++. +..+++|+.|++++|.......+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|. +
T Consensus 251 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~------~~~-~~~l~~L~~L~L~~n~-l 321 (466)
T 1o6v_A 251 ANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED------ISP-ISNLKNLTYLTLYFNN-I 321 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC------CGG-GGGCTTCSEEECCSSC-C
T ss_pred CCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccC------chh-hcCCCCCCEEECcCCc-C
Confidence 9999887765 88889999999998874333337888899999999998888 764 7888999999999875 4
Q ss_pred cccCCC--CCCCceEEecCCCCCCccc
Q 045186 161 QSLPQI--PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 161 ~~lp~l--~~~L~~L~~~~c~~L~~l~ 185 (411)
..++.+ .++|+.|++.+| .+..++
T Consensus 322 ~~~~~~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 322 SDISPVSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp SCCGGGGGCTTCCEEECCSS-CCCCCG
T ss_pred CCchhhccCccCCEeECCCC-ccCCch
Confidence 443332 377888888877 344443
No 74
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.6e-15 Score=131.79 Aligned_cols=132 Identities=20% Similarity=0.144 Sum_probs=89.9
Q ss_pred CCCCccEEEEecCCCCc--ccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCc-cChhhhccCCCC
Q 045186 23 LLSGLVQLSLKGCKNLL--SLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITE-VPSSIELLHGLE 99 (411)
Q Consensus 23 ~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~ 99 (411)
..++|+.|+|++|. +. .+|..+..+++|++|++++|. +..+ ..++.+++|+.|++++|.++. +|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 34667777777754 43 666666667777777777754 4444 556667777777777777775 666666677777
Q ss_pred EEecCCCCCCh-h--HHHhhccccceeecCCCCccccccccccch----hhhcCCCCCEecccCcccccccC
Q 045186 100 LLNLNNCKNLW-T--TIIYIMAFARSFQFDGKEFISCSFDVVFSV----SISGLLNLKELELEDCKRLQSLP 164 (411)
Q Consensus 100 ~L~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~----~l~~l~~L~~L~L~~c~~l~~lp 164 (411)
.|++++|.... + ..+..+++|+.|++++|.++. +|. .+..+++|+.|++++|. +..+|
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~------~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN------LNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT------STTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc------hHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 77777776222 1 446777788888888888887 775 67888888888888875 34443
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=3.8e-15 Score=150.60 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=61.1
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++|++|++++|.++.+| .++.+++|++|+|++| .+..+| ++.+++|++|++++|. +..+| ++++++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECC
Confidence 56777777777777665 4777777777777774 455554 5666667777776643 44443 5566666666666
Q ss_pred CCCCCccChhhhccCCCCEEecCCCC
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCK 107 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~ 107 (411)
+|.++.+| ++.+++|+.|++++|.
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNT 138 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSC
T ss_pred CCcCCeec--CCCCCcCCEEECCCCc
Confidence 66666554 5555566666655554
No 76
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=4e-15 Score=136.34 Aligned_cols=145 Identities=20% Similarity=0.160 Sum_probs=102.7
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCC
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGT 83 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~ 83 (411)
+.++.+++.+..+|..+. ++|++|+|++|......|..+..+++|++|+|++|. ++.+|. .++.+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC
Confidence 456777777888877553 778888888864444446667778888888888854 566664 4577888888888888
Q ss_pred CCCccChh-hhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCcc
Q 045186 84 SITEVPSS-IELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCK 158 (411)
Q Consensus 84 ~i~~lp~~-i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~ 158 (411)
.|+.+|.. +..+++|+.|+|++|.. ..+..+..+++|+.|+|++|.+.. +| ..+..+++|+.|+|++|+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS------IPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc------cCHHHHhCCCCCCEEEeeCCC
Confidence 88877654 56778888888887762 223446777777777777777777 66 346677777777777765
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=6.3e-15 Score=132.60 Aligned_cols=149 Identities=22% Similarity=0.268 Sum_probs=83.0
Q ss_pred ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186 3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY 79 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~ 79 (411)
+|++|+|++|.++.++.. ++.+++|++|+|++| .+..+|.. +..+++|++|+|++|. +..+|. .++.+++|+.|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence 466666666666655543 456666666666664 34444432 3556666666666643 334433 345666666666
Q ss_pred ccCCCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186 80 LDGTSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED 156 (411)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~ 156 (411)
+++|.++.+|.. +..+++|+.|++++|. ......+..+++|+.|++++|.+.. .+++|+.|+++.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------------~~~~l~~L~~~~ 174 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------------TCPGIRYLSEWI 174 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------------CTTTTHHHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------------CCCCHHHHHHHH
Confidence 666666655543 4556666666666665 2222335556666666666665443 234555666666
Q ss_pred cccccccCC
Q 045186 157 CKRLQSLPQ 165 (411)
Q Consensus 157 c~~l~~lp~ 165 (411)
|...+.+|.
T Consensus 175 n~~~g~ip~ 183 (208)
T 2o6s_A 175 NKHSGVVRN 183 (208)
T ss_dssp HHCTTTBBC
T ss_pred HhCCceeec
Confidence 555555554
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=7e-16 Score=158.79 Aligned_cols=171 Identities=18% Similarity=0.127 Sum_probs=131.8
Q ss_pred CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
++|++|+|++|.++.+ |..++++++|++|+|++|......|..+..+++|++|+|++|...+..|..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4799999999999977 456999999999999997544444577899999999999997544444455899999999999
Q ss_pred cCCCCC--ccChhhhccCCCCEEecCCCCC---ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186 81 DGTSIT--EVPSSIELLHGLELLNLNNCKN---LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155 (411)
Q Consensus 81 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~~---~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~ 155 (411)
++|.++ .+|..++.+++|+.|++++|.. .....+..+++|++|++++|.+.+ .+|..+..+++|+.|+++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-----YQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----ECTTTTTTCSEEEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-----cChhhhhccccCceEecc
Confidence 999998 4567899999999999999862 222458889999999999998877 356677777777777777
Q ss_pred CcccccccCC----CCCCCceEEecCC
Q 045186 156 DCKRLQSLPQ----IPPNLWLVRANGC 178 (411)
Q Consensus 156 ~c~~l~~lp~----l~~~L~~L~~~~c 178 (411)
+|. +..+|. ..++|++|+++++
T Consensus 181 ~n~-~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 181 LSE-SAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp CSB-STTHHHHHHHSTTTBSEEEEESC
T ss_pred cCc-ccccchhhHhhcccccEEEccCC
Confidence 654 233332 1356666666654
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=9.7e-15 Score=152.78 Aligned_cols=91 Identities=25% Similarity=0.418 Sum_probs=41.2
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+|++|+|++|.|+.+|. .+++|++|+|++| .++.+|. .+++|++|+|++| .+..+|. .+++|+.|++++
T Consensus 62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred CCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 34444444444444443 3344555555443 2344443 3444445555442 2333433 234444444444
Q ss_pred CCCCccChhhhccCCCCEEecCCCC
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCK 107 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~ 107 (411)
|.++.+|.. +++|+.|++++|.
T Consensus 131 N~l~~lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 131 NQLTSLPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSC
T ss_pred CCCCcCCCC---CCCCCEEECcCCc
Confidence 444444432 2455555555554
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=157.68 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=126.6
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc---ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcE
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL---PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLE 77 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l---p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~ 77 (411)
+++|++|++++|.+..... ...+++|++|++++|. +..+ |..+..+++|++|++++|. +..+|..++.+++|+.
T Consensus 324 l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH 400 (570)
T ss_dssp CSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred ccccCEEeCcCCccccccc-cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCE
Confidence 4678888888887764433 2778888888888864 4433 5667788888888888854 5556656788888888
Q ss_pred EEccCCCCCccC--hhhhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186 78 LYLDGTSITEVP--SSIELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153 (411)
Q Consensus 78 L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~ 153 (411)
|++++|.+...+ ..+..+++|+.|++++|.. ..+..+..+++|+.|++++|.+.. +.+|..+..+++|+.|+
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLD 476 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----GEECSCCTTCTTCCEEE
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc----ccchhhhhcccCCCEEE
Confidence 888888887553 3577888888888888872 234457788888888888888761 12777788888888888
Q ss_pred ccCcccccccCCC---CCCCceEEecCCCCCCccc
Q 045186 154 LEDCKRLQSLPQI---PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 154 L~~c~~l~~lp~l---~~~L~~L~~~~c~~L~~l~ 185 (411)
+++|......|.. .++|+.|++++| .++.++
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCC-cCCCCC
Confidence 8887644333432 267888888876 344443
No 81
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.61 E-value=1e-14 Score=147.52 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=140.5
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|++++|.+..+++ ++.+++|+.|++++| .+..++ .+..+++|+.|++++|. +..++. ++.+++|+.|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEEC
T ss_pred CCCCCEEEecCCccccccc-ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEEC
Confidence 5789999999999998776 888999999999996 566665 47789999999999965 555554 888999999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL 160 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l 160 (411)
++|.++.++. +..+++|+.|++++|.......+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|+ +
T Consensus 273 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~------~~~-~~~l~~L~~L~l~~n~-l 343 (466)
T 1o6v_A 273 GANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD------ISP-VSSLTKLQRLFFYNNK-V 343 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC------CGG-GGGCTTCCEEECCSSC-C
T ss_pred CCCccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCC------chh-hccCccCCEeECCCCc-c
Confidence 9999998876 88999999999999984443448899999999999999998 764 7899999999999984 5
Q ss_pred cccCCCC--CCCceEEecCCCCC
Q 045186 161 QSLPQIP--PNLWLVRANGCSSL 181 (411)
Q Consensus 161 ~~lp~l~--~~L~~L~~~~c~~L 181 (411)
..++.+. ++|+.|++++|.--
T Consensus 344 ~~~~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 344 SDVSSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCC
T ss_pred CCchhhccCCCCCEEeCCCCccC
Confidence 6665543 78999999888543
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=8.9e-15 Score=147.88 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=82.0
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-------------------ccCCCCCccEEEeeCCCCC
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-------------------AISSLKCLRNLKLSGCSKL 62 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-------------------~i~~l~~L~~L~Ls~c~~l 62 (411)
++|++|++++|.|+.+| ++++++|++|++++| .+..+|- .+..+++|++|++++|..+
T Consensus 85 ~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp TTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC
T ss_pred CCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc
Confidence 45555666555555543 555555555555553 3333330 1334444444444444444
Q ss_pred cccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchh
Q 045186 63 KKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS 142 (411)
Q Consensus 63 ~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~ 142 (411)
+.+ .++.+++|+.|++++|.++.+| ++.+++|+.|++++|..... .++.+++|+.|++++|.+++ +|
T Consensus 162 ~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~------ip-- 228 (457)
T 3bz5_A 162 TKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE------ID-- 228 (457)
T ss_dssp CCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC------CC--
T ss_pred ccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc------cC--
Confidence 444 2455666677777777776665 66667777777776662221 25666777777777777777 66
Q ss_pred hhcCCCCCEecccCcc
Q 045186 143 ISGLLNLKELELEDCK 158 (411)
Q Consensus 143 l~~l~~L~~L~L~~c~ 158 (411)
+..+++|+.|++++|.
T Consensus 229 ~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CTTCTTCSEEECCSSC
T ss_pred ccccCCCCEEEeeCCc
Confidence 6667777777777654
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=6.3e-15 Score=153.85 Aligned_cols=146 Identities=21% Similarity=0.302 Sum_probs=128.6
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
|++|+.|+|++|.|..+++ +..+++|+.|+|++| .+..+| .+..+++|+.|+|++|. +..++ .+..+++|+.|+|
T Consensus 64 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEEC
T ss_pred CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCCCccCEEEC
Confidence 5799999999999999887 999999999999996 667776 58899999999999964 56665 5888999999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR 159 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~ 159 (411)
++|.++.+ ..+..+++|+.|+|++|.......+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|+.
T Consensus 139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~------l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD------LR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB------CG-GGTTCTTCSEEECCSEEE
T ss_pred CCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC------Ch-HHccCCCCCEEEccCCcC
Confidence 99999988 6799999999999999984333338999999999999999999 86 689999999999999864
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.60 E-value=5.6e-15 Score=156.14 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=109.9
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~ 79 (411)
++|++|+|++|.++.+|. .++++++|++|+|++|......|..+.++++|++|+|++| .+..+|. .++++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 468888888888887765 4888888888888886544444666777888888888885 4566665 577888888888
Q ss_pred ccCCCCCccC-hhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccch-hh--hcCCCCCEec
Q 045186 80 LDGTSITEVP-SSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV-SI--SGLLNLKELE 153 (411)
Q Consensus 80 L~~~~i~~lp-~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~-~l--~~l~~L~~L~ 153 (411)
+++|.++.+| ..++.+++|++|++++|. ...+..++.+++|++|++++|.+++ ++. .+ ..+++|+.|+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA------LKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC------BCHHHHGGGTTCEESEEE
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc------cCHHHhhccccccccEEE
Confidence 8888888666 467888888888888886 2333446777888888888887777 543 23 2457788888
Q ss_pred ccCcc
Q 045186 154 LEDCK 158 (411)
Q Consensus 154 L~~c~ 158 (411)
+++|.
T Consensus 178 L~~n~ 182 (680)
T 1ziw_A 178 LSSNQ 182 (680)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87764
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=6.1e-15 Score=131.78 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=111.1
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|++++|.++.++ .+..+++|++|++++|......|..+..+++|++|++++|......|..++.+++|+.|++
T Consensus 65 l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 143 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143 (197)
T ss_dssp CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence 578999999999888776 5999999999999997554457788999999999999998766678888999999999999
Q ss_pred cCCC-CCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccc
Q 045186 81 DGTS-ITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 81 ~~~~-i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
++|. ++.+| .+..+++|+.|++++|.......+..+++|+.|++++|++..
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 9998 88887 799999999999999984443478899999999999998764
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=3.4e-15 Score=153.62 Aligned_cols=171 Identities=20% Similarity=0.270 Sum_probs=135.4
Q ss_pred CceeEEEEeCCCCCcccccc-cCCCCccEEEEecCCCCccccc---ccCCCCCccEEEeeCCCCCcccc---hhccCCCC
Q 045186 2 ECLRELLLDGTDIKELPVSI-ELLSGLVQLSLKGCKNLLSLPI---AISSLKCLRNLKLSGCSKLKKFP---QIVASMED 74 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si-~~l~~L~~L~L~~c~~l~~lp~---~i~~l~~L~~L~Ls~c~~l~~lp---~~l~~l~~ 74 (411)
++|++|++++|.+..+|..+ +++++|++|+|++|...+.+|. .+..+++|++|++++| .+..+| ..++.+++
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCC
Confidence 46899999999999999876 5799999999999866555543 3678999999999996 566555 45888999
Q ss_pred CcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecc
Q 045186 75 LLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELEL 154 (411)
Q Consensus 75 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L 154 (411)
|++|++++|.++.+|..++.+++|+.|++++|...... -...++|+.|+|++|++++ ++ ..+++|+.|+|
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~Ls~N~l~~------~~---~~l~~L~~L~L 458 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK-TCIPQTLEVLDVSNNNLDS------FS---LFLPRLQELYI 458 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCC-TTSCTTCSEEECCSSCCSC------CC---CCCTTCCEEEC
T ss_pred CCEEECCCCCCccCChhhcccccccEEECCCCCccccc-chhcCCceEEECCCCChhh------hc---ccCChhcEEEC
Confidence 99999999999999999999999999999999832100 1113689999999998888 65 46788999999
Q ss_pred cCcccccccCCC--CCCCceEEecCCCCCCccc
Q 045186 155 EDCKRLQSLPQI--PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 155 ~~c~~l~~lp~l--~~~L~~L~~~~c~~L~~l~ 185 (411)
++| .++.+|.. .++|+.|+++++ .++.++
T Consensus 459 s~N-~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~ 489 (549)
T 2z81_A 459 SRN-KLKTLPDASLFPVLLVMKISRN-QLKSVP 489 (549)
T ss_dssp CSS-CCSSCCCGGGCTTCCEEECCSS-CCCCCC
T ss_pred CCC-ccCcCCCcccCccCCEEecCCC-ccCCcC
Confidence 987 46677764 478889998886 444444
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=8.9e-15 Score=151.40 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=60.3
Q ss_pred cCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCc---ccchhccCCCCCcEEEccCCCCCc-cChh-hhccC
Q 045186 22 ELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLK---KFPQIVASMEDLLELYLDGTSITE-VPSS-IELLH 96 (411)
Q Consensus 22 ~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~---~lp~~l~~l~~L~~L~L~~~~i~~-lp~~-i~~l~ 96 (411)
+.+++|++|++++|.....+|..+..+++|++|++++|. +. .+|..++++++|+.|++++|.++. +|.. +..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 344455555555543333344445555555555555532 22 222334455555555555555553 4432 44445
Q ss_pred CCCEEecCCCCCChhHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186 97 GLELLNLNNCKNLWTTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157 (411)
Q Consensus 97 ~L~~L~L~~~~~~~~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c 157 (411)
+|+.|++++|... ......+ ++|+.|+|++|.++. +|..+..+++|+.|+|++|
T Consensus 429 ~L~~L~l~~n~l~-~~~~~~l~~~L~~L~L~~N~l~~------ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 429 SILVLNLSSNMLT-GSVFRCLPPKVKVLDLHNNRIMS------IPKDVTHLQALQELNVASN 483 (562)
T ss_dssp TCCEEECCSSCCC-GGGGSSCCTTCSEEECCSSCCCC------CCTTTTSSCCCSEEECCSS
T ss_pred cCCEEECCCCCCC-cchhhhhcCcCCEEECCCCcCcc------cChhhcCCCCCCEEECCCC
Confidence 5555555555421 1112222 355555555555555 5555555555555555554
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=6.9e-15 Score=151.81 Aligned_cols=170 Identities=17% Similarity=0.125 Sum_probs=136.7
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
+++++|+|++|.++.++. +|+++++|++|+|++|. +..+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 468999999999997754 69999999999999974 5555 45688999999999999654344447889999999999
Q ss_pred ccCCCCCccCh-hhhccCCCCEEecCCCCCC---hhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCC----C
Q 045186 80 LDGTSITEVPS-SIELLHGLELLNLNNCKNL---WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNL----K 150 (411)
Q Consensus 80 L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~---~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L----~ 150 (411)
+++|.++.+|. .++.+++|++|++++|... .+..++.+++|+.|++++|.+.. ++ ..++.+++| +
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE------ECGGGGHHHHTCTTCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce------ecHHHccchhccchhhh
Confidence 99999998876 6899999999999999733 35679999999999999999988 64 567888888 8
Q ss_pred EecccCcccccccCCCC--CCCceEEecCC
Q 045186 151 ELELEDCKRLQSLPQIP--PNLWLVRANGC 178 (411)
Q Consensus 151 ~L~L~~c~~l~~lp~l~--~~L~~L~~~~c 178 (411)
.|++++|..-...|... .+|+.|++.++
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred hcccCCCCceecCHHHhccCcceeEecccc
Confidence 89999876433333322 35788887765
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=7.2e-15 Score=150.35 Aligned_cols=152 Identities=14% Similarity=0.112 Sum_probs=128.6
Q ss_pred CCceeEEEEeCCCCCc-ccccccCCCCccEEEEecCCCCc--ccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCc
Q 045186 1 MECLRELLLDGTDIKE-LPVSIELLSGLVQLSLKGCKNLL--SLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLL 76 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~si~~l~~L~~L~L~~c~~l~--~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~ 76 (411)
+++|++|++++|.++. +|..++++++|++|+|++|.... .+|..+..+++|++|++++|.....+|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 4789999999999995 78889999999999999975443 56677899999999999997655548865 78899999
Q ss_pred EEEccCCCCC-ccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEec
Q 045186 77 ELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELE 153 (411)
Q Consensus 77 ~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~ 153 (411)
.|++++|.++ .+|..+. ++|+.|++++|.. ..+..+..+++|+.|+|++|.++. +|.. +..+++|+.|+
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS------VPDGIFDRLTSLQKIW 474 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEE
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc------cCHHHhccCCcccEEE
Confidence 9999999997 5665543 7999999999983 334446699999999999999999 9976 88999999999
Q ss_pred ccCcccc
Q 045186 154 LEDCKRL 160 (411)
Q Consensus 154 L~~c~~l 160 (411)
+++|+..
T Consensus 475 l~~N~~~ 481 (520)
T 2z7x_B 475 LHTNPWD 481 (520)
T ss_dssp CCSSCBC
T ss_pred CcCCCCc
Confidence 9998743
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=9.1e-15 Score=142.50 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=122.4
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L 78 (411)
+++++|+|++|.|+.+|. +|+++++|++|+|++|..++.+|. .+.++++|+.+.+.+++.+..+| ..++.+++|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 478999999999999986 489999999999999876777765 46788888876666667777774 567899999999
Q ss_pred EccCCCCCccChh-hhccCCCCEEecCCCCCCh---hHHHhhc-cccceeecCCCCccccccccccchhhhcCCCCCEec
Q 045186 79 YLDGTSITEVPSS-IELLHGLELLNLNNCKNLW---TTIIYIM-AFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELE 153 (411)
Q Consensus 79 ~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~---~~~l~~l-~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~ 153 (411)
++++|.++.+|.. +....++..|++.++..+. ...+..+ ..|+.|+|++|.++. +|..+....+|+.|+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~------i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE------IHNSAFNGTQLDELN 183 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE------ECTTSSTTEEEEEEE
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC------CChhhccccchhHHh
Confidence 9999999877653 3455566777776554221 1223333 356677777777766 665555555666666
Q ss_pred ccCcccccccCCC----CCCCceEEecCCCCCCccc
Q 045186 154 LEDCKRLQSLPQI----PPNLWLVRANGCSSLVTLS 185 (411)
Q Consensus 154 L~~c~~l~~lp~l----~~~L~~L~~~~c~~L~~l~ 185 (411)
+.+++.++.+|.- .++|+.|+++++ .|+.+|
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence 6666666666541 145566666554 345444
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=3.3e-14 Score=150.20 Aligned_cols=130 Identities=20% Similarity=0.188 Sum_probs=91.7
Q ss_pred CCceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcE
Q 045186 1 MECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLE 77 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~ 77 (411)
+++|++|+|++|.++.+ |..++++++|++|+|++| .+..+|. .+.++++|++|++++|. +..+| ..++++++|++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCE
Confidence 35788888888888765 455788888888888875 5566665 47788888888888864 44444 56778888888
Q ss_pred EEccCCCCCc-cChhhhccCCCCEEecCCCC--CChhHHHh--hccccceeecCCCCccc
Q 045186 78 LYLDGTSITE-VPSSIELLHGLELLNLNNCK--NLWTTIIY--IMAFARSFQFDGKEFIS 132 (411)
Q Consensus 78 L~L~~~~i~~-lp~~i~~l~~L~~L~L~~~~--~~~~~~l~--~l~~L~~L~Ls~n~~~~ 132 (411)
|++++|.++. .|..++++++|+.|++++|. ...+..+. .+++|+.|++++|.+.+
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 8888888774 34557778888888888776 23333332 44677777777776655
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=2e-14 Score=150.47 Aligned_cols=195 Identities=24% Similarity=0.307 Sum_probs=120.2
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|+.|++++| .+..+|.. +++|++|+|
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~L 148 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSV 148 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEEC
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEEC
Confidence 4689999999999998887 6788999999885 5677776 5677888888774 46666654 367777777
Q ss_pred cCCCCCccChhhh-----------------ccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhh
Q 045186 81 DGTSITEVPSSIE-----------------LLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI 143 (411)
Q Consensus 81 ~~~~i~~lp~~i~-----------------~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l 143 (411)
++|.++.+|..+. .+++|+.|++++|.... .-..+++|+.|++++|.++. +|..
T Consensus 149 s~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~------l~~~- 219 (622)
T 3g06_A 149 SDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTS------LPAL- 219 (622)
T ss_dssp CSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSS------CCCC-
T ss_pred cCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC--CCCccchhhEEECcCCcccc------cCCC-
Confidence 7777776654321 12555555555554111 00123455556666665555 5532
Q ss_pred hcCCCCCEecccCcccccccCCCCCCCceEEecCCCCCCcccCCcCcchhhhcccCCCCCceEEEccCCCCCcccccCCC
Q 045186 144 SGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSSLVTLSGALNLRKSEYTAVSNPSHKLSIVVPGSEIPKWFMYQNE 223 (411)
Q Consensus 144 ~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~L~~l~~~~nl~~~~~~~~~~~~~~~~~~~pg~~iP~Wf~~~~~ 223 (411)
+++|+.|++++| .++.+|..+++|+.|+++++ .++.++. .+ ..+..+.+..+.+ ..||.+|.....
T Consensus 220 --~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~--~~--~~L~~L~Ls~N~L------~~lp~~l~~l~~ 285 (622)
T 3g06_A 220 --PSGLKELIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPM--LP--SGLLSLSVYRNQL------TRLPESLIHLSS 285 (622)
T ss_dssp --CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCC------CSCCGGGGGSCT
T ss_pred --CCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCc--cc--ccCcEEeCCCCCC------CcCCHHHhhccc
Confidence 366777777775 46667766677788887776 4555554 11 1112222222211 267888877666
Q ss_pred CceEEE
Q 045186 224 GSSITV 229 (411)
Q Consensus 224 ~~sl~~ 229 (411)
...+.+
T Consensus 286 L~~L~L 291 (622)
T 3g06_A 286 ETTVNL 291 (622)
T ss_dssp TCEEEC
T ss_pred cCEEEe
Confidence 655544
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=1.3e-14 Score=150.14 Aligned_cols=157 Identities=20% Similarity=0.315 Sum_probs=127.4
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+|+.|+|++|.|+.+|..+ +++|++|+|++| .++.+| ..+++|++|+|++| .+..+|. +.+ +|+.|+|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 7899999999999999866 388999999995 677888 46789999999996 5666888 655 899999999
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS 162 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ 162 (411)
|.++.+|. .+++|+.|++++|...... ..+++|+.|+|++|.+++ +|. +. ++|+.|+|++| .++.
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp--~~l~~L~~L~Ls~N~L~~------lp~-l~--~~L~~L~Ls~N-~L~~ 194 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLP--ELPTSLEVLSVRNNQLTF------LPE-LP--ESLEALDVSTN-LLES 194 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC------CCC-CC--TTCCEEECCSS-CCSS
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCC--CcCCCcCEEECCCCCCCC------cch-hh--CCCCEEECcCC-CCCc
Confidence 99999987 6899999999999832111 157899999999999999 987 65 89999999997 5778
Q ss_pred cCCCCCCC-------ceEEecCCCCCCccc
Q 045186 163 LPQIPPNL-------WLVRANGCSSLVTLS 185 (411)
Q Consensus 163 lp~l~~~L-------~~L~~~~c~~L~~l~ 185 (411)
+|.++.+| +.|+++++ .++.+|
T Consensus 195 lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp 223 (571)
T 3cvr_A 195 LPAVPVRNHHSEETEIFFRCREN-RITHIP 223 (571)
T ss_dssp CCCCC--------CCEEEECCSS-CCCCCC
T ss_pred hhhHHHhhhcccccceEEecCCC-cceecC
Confidence 88876778 88888876 455554
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=1.5e-14 Score=146.17 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=108.3
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+|++|++++|.++.+|.. .++|++|++++| .+..+| .+..+++|++|++++| .+..+|..+ .+|++|++++
T Consensus 112 ~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~~ 182 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAGN 182 (454)
T ss_dssp TCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECCS
T ss_pred CCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCCc---ccccEEECcC
Confidence 455555555555544431 157888888885 455677 4788888888888885 455676543 5788888888
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS 162 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ 162 (411)
|.++.+| .++.+++|+.|++++|..... -...++|+.|++++|.+.. +| .+..+++|+.|++++|. ++.
T Consensus 183 n~l~~l~-~~~~l~~L~~L~l~~N~l~~l--~~~~~~L~~L~l~~n~l~~------lp-~~~~l~~L~~L~l~~N~-l~~ 251 (454)
T 1jl5_A 183 NQLEELP-ELQNLPFLTAIYADNNSLKKL--PDLPLSLESIVAGNNILEE------LP-ELQNLPFLTTIYADNNL-LKT 251 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSCCSSC--CCCCTTCCEEECCSSCCSS------CC-CCTTCTTCCEEECCSSC-CSS
T ss_pred CcCCcCc-cccCCCCCCEEECCCCcCCcC--CCCcCcccEEECcCCcCCc------cc-ccCCCCCCCEEECCCCc-CCc
Confidence 8888877 578888888888888762210 0123577888888887777 77 37777888888887754 556
Q ss_pred cCCCCCCCceEEecCCC
Q 045186 163 LPQIPPNLWLVRANGCS 179 (411)
Q Consensus 163 lp~l~~~L~~L~~~~c~ 179 (411)
+|..+++|+.|++++|.
T Consensus 252 l~~~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 252 LPDLPPSLEALNVRDNY 268 (454)
T ss_dssp CCSCCTTCCEEECCSSC
T ss_pred ccccccccCEEECCCCc
Confidence 77777777777777663
No 95
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=1.6e-14 Score=132.39 Aligned_cols=129 Identities=25% Similarity=0.313 Sum_probs=112.2
Q ss_pred CceeEEEEeCCCCCcc-cccccCCCCccEEEEecCCCCcccccc-cCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKEL-PVSIELLSGLVQLSLKGCKNLLSLPIA-ISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~-i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L 78 (411)
++|++|+|++|.|+.+ |..+.++++|++|+|++| .+..+|.. +..+++|++|+|++| .+..+|. .++.+++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 5799999999999977 566999999999999996 56777654 578999999999996 5666664 46889999999
Q ss_pred EccCCCCCccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186 79 YLDGTSITEVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+|++|.++.+|..+..+++|+.|+|++|. ......+..+++|+.|+|++|.+..
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999999999999999999999999998 3344558899999999999999875
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=142.46 Aligned_cols=163 Identities=23% Similarity=0.218 Sum_probs=122.5
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccc-cC-CCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEcc
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIA-IS-SLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLD 81 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~-i~-~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~ 81 (411)
+.++++++.++.+|..+. ..++.|+|++| .+..++.. +. .+++|++|+|++| .+..++ ..+.++++|+.|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 468888888998887654 46889999985 56666544 44 7899999999985 455555 568889999999999
Q ss_pred CCCCCccCh-hhhccCCCCEEecCCCCCC--hhHHHhhccccceeecCCCCccccccccccchhh----hcCCCCCEecc
Q 045186 82 GTSITEVPS-SIELLHGLELLNLNNCKNL--WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI----SGLLNLKELEL 154 (411)
Q Consensus 82 ~~~i~~lp~-~i~~l~~L~~L~L~~~~~~--~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l----~~l~~L~~L~L 154 (411)
+|.++.++. .+..+++|+.|+|++|... .+..+..+++|+.|+|++|.++. +|..+ ..+++|+.|+|
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR------FPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS------CCGGGTC----CTTCCEEEC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe------eCHHHhcCcccCCcCCEEEC
Confidence 999997765 4788999999999998833 34558889999999999999998 88665 56899999999
Q ss_pred cCcccccccCC-----CCC-CCceEEecCC
Q 045186 155 EDCKRLQSLPQ-----IPP-NLWLVRANGC 178 (411)
Q Consensus 155 ~~c~~l~~lp~-----l~~-~L~~L~~~~c 178 (411)
++|. ++.+|. ++. .++.|++.++
T Consensus 171 ~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 171 SSNK-LKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSC-CCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCC-CCccCHHHhhhccHhhcceEEecCC
Confidence 9864 555552 221 1356676654
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=6.7e-17 Score=167.65 Aligned_cols=154 Identities=16% Similarity=0.079 Sum_probs=114.8
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCC-------------CCcccccccCCC--------------------
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCK-------------NLLSLPIAISSL-------------------- 48 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~-------------~l~~lp~~i~~l-------------------- 48 (411)
++|+.|+|++|.|+.+|.+++++++|+.|++++|. ..+.+|..++.+
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 57888999999999999999999999999986542 222233222222
Q ss_pred ------------CCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCCCCCChhHHHhh
Q 045186 49 ------------KCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNNCKNLWTTIIYI 116 (411)
Q Consensus 49 ------------~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~ 116 (411)
..|+.|+|++| .++.+|. ++.+++|+.|+|++|.|+.+|..++.+++|+.|+|++|.......++.
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~ 506 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 506 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred hhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCC
Confidence 24677888884 5666776 778888888888888888888888888888888888887322226778
Q ss_pred ccccceeecCCCCcccccccccc--chhhhcCCCCCEecccCcccccccC
Q 045186 117 MAFARSFQFDGKEFISCSFDVVF--SVSISGLLNLKELELEDCKRLQSLP 164 (411)
Q Consensus 117 l~~L~~L~Ls~n~~~~~~~~~~l--p~~l~~l~~L~~L~L~~c~~l~~lp 164 (411)
+++|+.|+|++|.+++ + |..++.+++|+.|+|++|+ ++.+|
T Consensus 507 l~~L~~L~Ls~N~l~~------~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQ------SAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CSSCCEEECCSSCCCS------SSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred CCCCcEEECCCCCCCC------CCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 8888888888888887 6 7788888888888888865 44443
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.56 E-value=1.9e-14 Score=149.87 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=115.7
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L 78 (411)
+++++|+|++|.|+.+|+ +|.++++|++|+|++| .+..+|. .+.++++|++|+|++| .++.+|. .++++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEE
Confidence 368899999999998875 5889999999999986 5666654 5788999999999995 5677764 57889999999
Q ss_pred EccCCCCCccCh-hhhccCCCCEEecCCCCC---ChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCC---
Q 045186 79 YLDGTSITEVPS-SIELLHGLELLNLNNCKN---LWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLK--- 150 (411)
Q Consensus 79 ~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~---~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~--- 150 (411)
+|++|.++.+|. .++++++|+.|++++|.. ..+..++.+++|++|++++|.+++ ++ ..+..+.+++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLHQMPLLN 203 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE------ECGGGGHHHHTCTTCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc------cccccccchhhhhhhh
Confidence 999999998876 488899999999998873 234568889999999999998887 53 4555554443
Q ss_pred -EecccCcc
Q 045186 151 -ELELEDCK 158 (411)
Q Consensus 151 -~L~L~~c~ 158 (411)
.++++.+.
T Consensus 204 ~~~~ls~n~ 212 (635)
T 4g8a_A 204 LSLDLSLNP 212 (635)
T ss_dssp CEEECTTCC
T ss_pred hhhhcccCc
Confidence 45565543
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=1.2e-14 Score=139.73 Aligned_cols=166 Identities=17% Similarity=0.099 Sum_probs=133.1
Q ss_pred CCceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 1 MECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+++|++|+|++|.|+.++. .++|++|++++| .+..++. ..+++|++|++++|......|..++.+++|+.|++
T Consensus 79 l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp CTTCCEEECCSSEEEEEEE----CTTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred cCCCCEEECcCCccccccC----CCCcCEEECCCC-ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 5789999999999987764 489999999996 5666654 34789999999996544444557888999999999
Q ss_pred cCCCCCccC-hhh-hccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 81 DGTSITEVP-SSI-ELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 81 ~~~~i~~lp-~~i-~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
++|.++.++ ..+ ..+++|+.|++++|..........+++|+.|+|++|.++. +|..+..+++|+.|++++|.
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~------l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSC
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc------chhhhcccCcccEEECcCCc
Confidence 999999654 444 4789999999999984433334468999999999999999 98889999999999999974
Q ss_pred cccccCCC---CCCCceEEecCCCC
Q 045186 159 RLQSLPQI---PPNLWLVRANGCSS 180 (411)
Q Consensus 159 ~l~~lp~l---~~~L~~L~~~~c~~ 180 (411)
++.+|.. .++|+.|++++++-
T Consensus 226 -l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 226 -LVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -CCEECTTCCCCTTCCEEECTTCCC
T ss_pred -ccchhhHhhcCCCCCEEEccCCCc
Confidence 6677753 26788888877653
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=4.1e-14 Score=142.88 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=68.0
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
+|++|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++| .+..+| .++++++|++|++++
T Consensus 92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp TCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC
Confidence 344444444444444432 244555555443 33333321 134555555553 233344 245555555555555
Q ss_pred CCCCccChhhhccCCCCEEecCCCCCChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS 162 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~ 162 (411)
|.++.+|..+ .+|+.|++++|.......++.+++|+.|++++|.+.+ +|... ++|+.|++++|. ++.
T Consensus 163 N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~------l~~~~---~~L~~L~l~~n~-l~~ 229 (454)
T 1jl5_A 163 NSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK------LPDLP---LSLESIVAGNNI-LEE 229 (454)
T ss_dssp SCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS------CCCCC---TTCCEEECCSSC-CSS
T ss_pred CcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc------CCCCc---CcccEEECcCCc-CCc
Confidence 5555444322 3455555555542111124445555555555555544 44321 345555555542 334
Q ss_pred cCCCC--CCCceEEecCC
Q 045186 163 LPQIP--PNLWLVRANGC 178 (411)
Q Consensus 163 lp~l~--~~L~~L~~~~c 178 (411)
+|.+. ++|+.|+++++
T Consensus 230 lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 230 LPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CCCCTTCTTCCEEECCSS
T ss_pred ccccCCCCCCCEEECCCC
Confidence 44322 34455554443
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=3.6e-15 Score=147.03 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=133.0
Q ss_pred CCceeEEEEeCCCCCc-----ccccccCCCCccEEEEecCC--CCc-cccccc-------CCCCCccEEEeeCCCCCc--
Q 045186 1 MECLRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCK--NLL-SLPIAI-------SSLKCLRNLKLSGCSKLK-- 63 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~--~l~-~lp~~i-------~~l~~L~~L~Ls~c~~l~-- 63 (411)
+++|++|+|++|.|.. ++..+..+++|++|+|++|. .+. .+|..+ ..+++|++|+|++|....
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4689999999998874 34457789999999999962 222 345444 688999999999976544
Q ss_pred --ccchhccCCCCCcEEEccCCCCCc-----cChhhhcc---------CCCCEEecCCCCCC---hh---HHHhhccccc
Q 045186 64 --KFPQIVASMEDLLELYLDGTSITE-----VPSSIELL---------HGLELLNLNNCKNL---WT---TIIYIMAFAR 121 (411)
Q Consensus 64 --~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l---------~~L~~L~L~~~~~~---~~---~~l~~l~~L~ 121 (411)
.+|..+..+++|++|+|++|.++. ++..+..+ ++|+.|++++|... .+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 478888899999999999999872 33344455 89999999999843 22 2477889999
Q ss_pred eeecCCCCccccccccccchhhhcCCCCCEecccCcccc----cccCC---CCCCCceEEecCCC
Q 045186 122 SFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRL----QSLPQ---IPPNLWLVRANGCS 179 (411)
Q Consensus 122 ~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l----~~lp~---l~~~L~~L~~~~c~ 179 (411)
.|+|++|.+........+|..+..+++|+.|+|++|..- ..+|. -.++|+.|++++|.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 999999988731001114447889999999999998742 34442 23679999998875
No 102
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.54 E-value=3.7e-14 Score=153.83 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=125.3
Q ss_pred CCceeEEEEeCCC-CCcc-cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh--ccCCCCCc
Q 045186 1 MECLRELLLDGTD-IKEL-PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI--VASMEDLL 76 (411)
Q Consensus 1 l~~L~~L~L~~~~-l~~l-p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~--l~~l~~L~ 76 (411)
+++|++|+|++|. +..+ |.+|+++++|++|+|++|......|..+.++++|++|+|++|...+.+|.. ++++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 5789999999984 4477 667999999999999997655556889999999999999998766666665 88999999
Q ss_pred EEEccCCCCCcc--ChhhhccCCCCEEecCCCC--CChhHHHhhc--cccceeecCCCCccccccccccchhhhcCCC--
Q 045186 77 ELYLDGTSITEV--PSSIELLHGLELLNLNNCK--NLWTTIIYIM--AFARSFQFDGKEFISCSFDVVFSVSISGLLN-- 148 (411)
Q Consensus 77 ~L~L~~~~i~~l--p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l--~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~-- 148 (411)
+|+|++|.++.+ +..++++++|+.|++++|. ...+..+..+ ++|+.|++++|.+.. ..|..+..+.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~-----~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS-----RVSVDWGKCMNPF 201 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC-----CCCCCCCSSSCTT
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc-----ccccchhhcCCcc
Confidence 999999999855 3579999999999999997 3334456665 899999999998876 34555555554
Q ss_pred ----CCEecccCcc
Q 045186 149 ----LKELELEDCK 158 (411)
Q Consensus 149 ----L~~L~L~~c~ 158 (411)
|+.|++++|.
T Consensus 202 ~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 202 RNMVLEILDVSGNG 215 (844)
T ss_dssp TTCCBSEEBCSSCC
T ss_pred ccCceeEEecCCCc
Confidence 9999999884
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.6e-14 Score=122.91 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=97.1
Q ss_pred CCCccEEEEecCCCC-cccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCc-cChhhhccCCCCEE
Q 045186 24 LSGLVQLSLKGCKNL-LSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITE-VPSSIELLHGLELL 101 (411)
Q Consensus 24 l~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~i~~l~~L~~L 101 (411)
.++|+.|++++|... +.+|..+..+++|++|++++| .+..+ ..++.+++|+.|++++|.++. +|..++.+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888886433 377777778888888888885 45555 667788888888888888886 77777778888888
Q ss_pred ecCCCCCCh-h--HHHhhccccceeecCCCCccccccccccch----hhhcCCCCCEecccC
Q 045186 102 NLNNCKNLW-T--TIIYIMAFARSFQFDGKEFISCSFDVVFSV----SISGLLNLKELELED 156 (411)
Q Consensus 102 ~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~----~l~~l~~L~~L~L~~ 156 (411)
++++|.... + ..++.+++|+.|++++|.+++ +|. .+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~------~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN------LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG------STTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc------hHHHHHHHHHHCCCcccccCCC
Confidence 888887333 2 458888999999999999988 775 688899999999864
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.53 E-value=3.9e-14 Score=122.96 Aligned_cols=129 Identities=22% Similarity=0.318 Sum_probs=112.3
Q ss_pred CceeEEEEeCCCCC--cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIK--ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
++|++|+|++|.++ .+|..+..+++|++|+|++|. +..+ ..+..+++|++|++++|.....+|..++.+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 57999999999998 899888999999999999975 6666 6688999999999999765555888888899999999
Q ss_pred ccCCCCCccC--hhhhccCCCCEEecCCCC--CChh---HHHhhccccceeecCCCCccc
Q 045186 80 LDGTSITEVP--SSIELLHGLELLNLNNCK--NLWT---TIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 80 L~~~~i~~lp--~~i~~l~~L~~L~L~~~~--~~~~---~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+++|.++.+| ..+..+++|+.|++++|. .... ..+..+++|+.|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999877 688999999999999997 2222 368899999999999999888
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=4e-14 Score=128.93 Aligned_cols=130 Identities=23% Similarity=0.333 Sum_probs=111.7
Q ss_pred CceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~ 79 (411)
++|+.|+|++|.|+.++. .+..+++|++|+|++|......|..+..+++|++|+|++| .+..+|.. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 479999999999998876 6899999999999997544444788999999999999995 56777764 68899999999
Q ss_pred ccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186 80 LDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 80 L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
|++|.|+.+ |..+..+++|+.|+|++|. ......+..+++|+.|+|++|.+..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999976 5678999999999999998 3444558899999999999998865
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=4.2e-14 Score=128.74 Aligned_cols=130 Identities=16% Similarity=0.185 Sum_probs=110.3
Q ss_pred CceeEEEEeCCCCCcccc--cccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 2 ECLRELLLDGTDIKELPV--SIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~--si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
+.+++|+|++|.|+.+++ .+..+++|++|+|++| .+..++. .+..+++|++|+|++|......|..++.+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 367899999999998843 3899999999999996 4666654 78999999999999965544445568999999999
Q ss_pred EccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186 79 YLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 79 ~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+|++|.|+.+ |..+..+++|+.|+|++|. ...+..+..+++|+.|+|++|.+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9999999976 6779999999999999998 3445668999999999999999875
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=4.1e-15 Score=146.65 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=134.6
Q ss_pred CCceeEEEEeCCCCC----cccccc-------cCCCCccEEEEecCCCCc----ccccccCCCCCccEEEeeCCCCCc--
Q 045186 1 MECLRELLLDGTDIK----ELPVSI-------ELLSGLVQLSLKGCKNLL----SLPIAISSLKCLRNLKLSGCSKLK-- 63 (411)
Q Consensus 1 l~~L~~L~L~~~~l~----~lp~si-------~~l~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~Ls~c~~l~-- 63 (411)
+++|++|+|++|.+. .+|..+ .++++|++|+|++|.... .+|..+..+++|++|+|++|....
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 478999999997655 345444 789999999999975444 377788899999999999976432
Q ss_pred --ccchhccCC---------CCCcEEEccCCCCC--ccC---hhhhccCCCCEEecCCCCCChh------H-HHhhcccc
Q 045186 64 --KFPQIVASM---------EDLLELYLDGTSIT--EVP---SSIELLHGLELLNLNNCKNLWT------T-IIYIMAFA 120 (411)
Q Consensus 64 --~lp~~l~~l---------~~L~~L~L~~~~i~--~lp---~~i~~l~~L~~L~L~~~~~~~~------~-~l~~l~~L 120 (411)
.++..+..+ ++|++|++++|.++ .+| ..+..+++|+.|++++|..... . .+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 233344444 89999999999997 555 4677899999999999985422 2 57789999
Q ss_pred ceeecCCCCccccccccccchhhhcCCCCCEecccCcccccc----cCC-C----CCCCceEEecCCC
Q 045186 121 RSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQS----LPQ-I----PPNLWLVRANGCS 179 (411)
Q Consensus 121 ~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~----lp~-l----~~~L~~L~~~~c~ 179 (411)
+.|+|++|.++. .....+|..+..+++|+.|+|++|..-.. ++. + .++|+.|++++|.
T Consensus 219 ~~L~Ls~n~l~~-~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 219 KVLDLQDNTFTH-LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp CEEECCSSCCHH-HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cEEECcCCCCCc-HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 999999999841 11113888899999999999999873222 232 1 5789999998874
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=5.2e-14 Score=137.75 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=112.3
Q ss_pred CceeEEEEeCCCCCccccc-cc-CCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccch-hccCCCCCcE
Q 045186 2 ECLRELLLDGTDIKELPVS-IE-LLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLE 77 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~s-i~-~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~ 77 (411)
++++.|+|++|.|+.++.. +. ++++|+.|+|++| .+..++ ..+..+++|++|+|++|. +..+|. .+..+++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCE
Confidence 3578889999888877655 54 7888999999885 555554 457888899999998854 555554 5778888999
Q ss_pred EEccCCCCCcc-ChhhhccCCCCEEecCCCC--CChhHHH---hhccccceeecCCCCccccccccccc-hhhhcCCC--
Q 045186 78 LYLDGTSITEV-PSSIELLHGLELLNLNNCK--NLWTTII---YIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLN-- 148 (411)
Q Consensus 78 L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~--~~~~~~l---~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~-- 148 (411)
|+|++|.|+.+ |..+..+++|+.|+|++|. .+....+ ..+++|+.|+|++|.+.. +| ..+..++.
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~~~ 190 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK------LPLTDLQKLPAWV 190 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC------CCHHHHHHSCHHH
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc------cCHHHhhhccHhh
Confidence 99999988865 5678888899999998887 2223333 668889999999998888 77 45667766
Q ss_pred CCEecccCcc
Q 045186 149 LKELELEDCK 158 (411)
Q Consensus 149 L~~L~L~~c~ 158 (411)
|+.|+|++|+
T Consensus 191 l~~l~l~~N~ 200 (361)
T 2xot_A 191 KNGLYLHNNP 200 (361)
T ss_dssp HTTEECCSSC
T ss_pred cceEEecCCC
Confidence 4778888876
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.52 E-value=3e-14 Score=147.40 Aligned_cols=151 Identities=17% Similarity=0.123 Sum_probs=125.6
Q ss_pred CCceeEEEEeCCCCCc-ccccccCCCCccEEEEecCCCCcc---cccccCCCCCccEEEeeCCCCCcccchh-ccCCCCC
Q 045186 1 MECLRELLLDGTDIKE-LPVSIELLSGLVQLSLKGCKNLLS---LPIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDL 75 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~-lp~si~~l~~L~~L~L~~c~~l~~---lp~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L 75 (411)
+++|++|++++|.++. +|..++++++|++|+|++| .+.. +|..+..+++|++|++++|.....+|.. +..+++|
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 4689999999999985 6788999999999999996 4554 4567889999999999997655547764 7789999
Q ss_pred cEEEccCCCCC-ccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEe
Q 045186 76 LELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKEL 152 (411)
Q Consensus 76 ~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L 152 (411)
+.|++++|.++ .+|..+. ++|+.|++++|.. ..+..+..+++|+.|+|++|.+++ +|.. +..+++|+.|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~------l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS------VPDGVFDRLTSLQYI 502 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC------CCTTSTTTCTTCCCE
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC------CCHHHHhcCCCCCEE
Confidence 99999999997 5554443 7999999999973 233345599999999999999999 9977 8899999999
Q ss_pred cccCcccc
Q 045186 153 ELEDCKRL 160 (411)
Q Consensus 153 ~L~~c~~l 160 (411)
++++|+..
T Consensus 503 ~l~~N~~~ 510 (562)
T 3a79_B 503 WLHDNPWD 510 (562)
T ss_dssp ECCSCCBC
T ss_pred EecCCCcC
Confidence 99998743
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=5e-14 Score=119.79 Aligned_cols=123 Identities=22% Similarity=0.289 Sum_probs=83.5
Q ss_pred CceeEEEEeCCCCC--cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIK--ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~--~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~ 79 (411)
++|+.|++++|.++ .+|..++.+++|++|++++| .+..+ ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45777777777776 67766677777777777775 45555 4566777777777777554444666666677777777
Q ss_pred ccCCCCCccC--hhhhccCCCCEEecCCCCC--Chh---HHHhhccccceeecC
Q 045186 80 LDGTSITEVP--SSIELLHGLELLNLNNCKN--LWT---TIIYIMAFARSFQFD 126 (411)
Q Consensus 80 L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~--~~~---~~l~~l~~L~~L~Ls 126 (411)
+++|.++.+| ..++.+++|+.|++++|.. ... ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777654 5677777777777777762 222 346777777777765
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=9.2e-14 Score=143.84 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=122.6
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
++|++|+|++|.|+.+| ..+++|++|+|++| .+..+|. +.. +|++|+|++| .++.+|. .+++|+.|+|+
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCC
Confidence 57999999999999999 56899999999996 6677888 655 9999999995 5666887 68999999999
Q ss_pred CCCCCccChhhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccchhhhcCCCC-------CEec
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNL-------KELE 153 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L-------~~L~ 153 (411)
+|.|+.+|. .+++|+.|+|++|... .+. +. ++|+.|+|++|.++. +|. +.. +| +.|+
T Consensus 149 ~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~------lp~-~~~--~L~~~~~~L~~L~ 213 (571)
T 3cvr_A 149 NNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES------LPA-VPV--RNHHSEETEIFFR 213 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS------CCC-CC----------CCEEEE
T ss_pred CCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc------hhh-HHH--hhhcccccceEEe
Confidence 999999987 6789999999999822 222 43 899999999999998 887 544 77 9999
Q ss_pred ccCcccccccCCC---CCCCceEEecCCCC
Q 045186 154 LEDCKRLQSLPQI---PPNLWLVRANGCSS 180 (411)
Q Consensus 154 L~~c~~l~~lp~l---~~~L~~L~~~~c~~ 180 (411)
|++|. ++.+|.. .++|+.|++++++-
T Consensus 214 Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 214 CRENR-ITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCSSC-CCCCCGGGGGSCTTEEEECCSSSC
T ss_pred cCCCc-ceecCHHHhcCCCCCEEEeeCCcC
Confidence 99974 6677652 26788888887753
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.3e-14 Score=154.91 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=64.6
Q ss_pred cccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCC
Q 045186 18 PVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHG 97 (411)
Q Consensus 18 p~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 97 (411)
|..+..+++|+.|+|++| .+..+|..+..+++|++|+|++| .+..+|..++++++|+.|+|++|.|+.+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 344556666666666664 34456655556666666666663 3446666666666666666666666666666666666
Q ss_pred CCEEecCCCC-CChhHHHhhccccceeecCCCCccc
Q 045186 98 LELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 98 L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
|+.|+|++|. ...+..++.+++|+.|+|++|.+++
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 6666666665 1222235666666666666666654
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=3.5e-14 Score=151.46 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=102.0
Q ss_pred ceeEEEEeCCCCCcccccccCCCCccEEEEec----CCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEE
Q 045186 3 CLRELLLDGTDIKELPVSIELLSGLVQLSLKG----CKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLEL 78 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~----c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L 78 (411)
.++.|.|.++.+..++..+.....|..+.+.. ++.+...|..+..+++|+.|+|++| .+..+|..+.++++|+.|
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEE
Confidence 46788888888887776655555555555443 2344456777889999999999995 467899888899999999
Q ss_pred EccCCCCCccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCc
Q 045186 79 YLDGTSITEVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDC 157 (411)
Q Consensus 79 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c 157 (411)
+|++|.|+.+|..++.+++|+.|+|++|.. ..+..++.+++|++|+|++|.+.. +|..++.+++|+.|+|++|
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT------LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC------CCSSTTSCTTCCCEECTTS
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc------cChhhhcCCCccEEeCCCC
Confidence 999999999999999999999999999983 334558999999999999999999 9999999999999999998
Q ss_pred ccccccC----------------------CCCCCCceEEecCC
Q 045186 158 KRLQSLP----------------------QIPPNLWLVRANGC 178 (411)
Q Consensus 158 ~~l~~lp----------------------~l~~~L~~L~~~~c 178 (411)
+....+| .+|..|..|++..+
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence 7543332 34567777777654
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.9e-13 Score=119.72 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=96.5
Q ss_pred ccCCCCccEEEEecCCCCcccccccCCCC-CccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhh-hccCCC
Q 045186 21 IELLSGLVQLSLKGCKNLLSLPIAISSLK-CLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSI-ELLHGL 98 (411)
Q Consensus 21 i~~l~~L~~L~L~~c~~l~~lp~~i~~l~-~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L 98 (411)
+.++.+|+.|++++| .+..+|. +..+. +|++|++++| .+..+ ..++.+++|+.|++++|.++.+|..+ +.+++|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 667778888888885 5566654 44444 8888888885 45555 56777888888888888888777654 788888
Q ss_pred CEEecCCCCCC-hhH--HHhhccccceeecCCCCccccccccccchh----hhcCCCCCEecccCcc
Q 045186 99 ELLNLNNCKNL-WTT--IIYIMAFARSFQFDGKEFISCSFDVVFSVS----ISGLLNLKELELEDCK 158 (411)
Q Consensus 99 ~~L~L~~~~~~-~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~----l~~l~~L~~L~L~~c~ 158 (411)
+.|++++|... .+. .+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~------~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN------KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG------STTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC------cHhHHHHHHHHCCccceeCCCcCC
Confidence 88888888732 232 47788888888888888888 8864 7888899999988875
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.4e-13 Score=120.64 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=108.6
Q ss_pred CCceeEEEEeCCCCCcccccccCCC-CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhc-cCCCCCcEE
Q 045186 1 MECLRELLLDGTDIKELPVSIELLS-GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIV-ASMEDLLEL 78 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~si~~l~-~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l-~~l~~L~~L 78 (411)
+++|++|++++|.++.+|. +..+. +|++|+|++| .+..+ ..+..+++|++|++++| .+..+|..+ +.+++|+.|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEE
Confidence 3689999999999998876 55555 9999999996 56677 56889999999999995 567777554 889999999
Q ss_pred EccCCCCCccCh--hhhccCCCCEEecCCCCCC-hhH----HHhhccccceeecCCCCccc
Q 045186 79 YLDGTSITEVPS--SIELLHGLELLNLNNCKNL-WTT----IIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 79 ~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~-~~~----~l~~l~~L~~L~Ls~n~~~~ 132 (411)
++++|.|+.+|. .+..+++|+.|++++|... .+. .+..+++|+.|++++|....
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999999997 8999999999999999832 222 48999999999999998766
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=1.6e-13 Score=122.23 Aligned_cols=125 Identities=22% Similarity=0.235 Sum_probs=89.0
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccc--cCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccC
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIA--ISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDG 82 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~--i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~ 82 (411)
++|++++++++.+|..+.. +|++|+|++| .+..++.. +..+++|++|+|++|...+..|..++.+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5678888888888876543 7888888885 56666543 67888888888888654444467788888888888888
Q ss_pred CCCCccChh-hhccCCCCEEecCCCCC--ChhHHHhhccccceeecCCCCccc
Q 045186 83 TSITEVPSS-IELLHGLELLNLNNCKN--LWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 83 ~~i~~lp~~-i~~l~~L~~L~L~~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
|.|+.++.. +..+++|+.|+|++|.. ..+..+..+++|+.|+|++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 888866543 67777777777777762 223446666677777777766654
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=6.2e-13 Score=129.46 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=138.6
Q ss_pred CCceeEEEEeCCCCC-cccc-cccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccch-hccCCCCCc
Q 045186 1 MECLRELLLDGTDIK-ELPV-SIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLL 76 (411)
Q Consensus 1 l~~L~~L~L~~~~l~-~lp~-si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~ 76 (411)
|++|++|+|++|.+. .+|. +|.++++|..+.+.+++.+..+ |..+..+++|++|++++| .+..+|. .+....++.
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKV 131 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhh
Confidence 578999999999985 4664 4889999887666655778877 456789999999999995 4565654 344566788
Q ss_pred EEEccC-CCCCccChh-hhcc-CCCCEEecCCCCCC-hhHHHhhccccceeecCC-CCccccccccccch-hhhcCCCCC
Q 045186 77 ELYLDG-TSITEVPSS-IELL-HGLELLNLNNCKNL-WTTIIYIMAFARSFQFDG-KEFISCSFDVVFSV-SISGLLNLK 150 (411)
Q Consensus 77 ~L~L~~-~~i~~lp~~-i~~l-~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~lp~-~l~~l~~L~ 150 (411)
.|++.+ +.+..+|.. +..+ ..|+.|++++|... .+.......+|+.|++++ |.+.. +|. .+..+++|+
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~------i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE------LPNDVFHGASGPV 205 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC------CCTTTTTTEECCS
T ss_pred hhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccC------CCHHHhccCcccc
Confidence 888865 578877754 4444 46899999998732 223344567899999975 67777 885 468899999
Q ss_pred EecccCcccccccCC-CCCCCceEEecCCCCCCcccCCcCc
Q 045186 151 ELELEDCKRLQSLPQ-IPPNLWLVRANGCSSLVTLSGALNL 190 (411)
Q Consensus 151 ~L~L~~c~~l~~lp~-l~~~L~~L~~~~c~~L~~l~~~~nl 190 (411)
.|+|++| .++.+|. ...+|+.|.+.++..|+.+|.+.++
T Consensus 206 ~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l 245 (350)
T 4ay9_X 206 ILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKLPTLEKL 245 (350)
T ss_dssp EEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred hhhcCCC-CcCccChhhhccchHhhhccCCCcCcCCCchhC
Confidence 9999997 5888875 4588999999999999999875544
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.44 E-value=2.3e-13 Score=141.64 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=71.1
Q ss_pred CCceeEEEEeCCCCCc---ccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCc
Q 045186 1 MECLRELLLDGTDIKE---LPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLL 76 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~---lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~ 76 (411)
+++|+.|++++|.+.. .+..+..+.+|++|++..+ ....++..+..+++|+.+++++++.....+ ..+..+.+++
T Consensus 370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred ccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccccchhhhhccccccccccccccccccc
Confidence 4577888888877652 3444556666777766654 233334444455555555555543332222 2233444444
Q ss_pred EEEccCCCCC-ccChhhhccCCCCEEecCCCCC---ChhHHHhhccccceeecCCCCcccccccccc-chhhhcCCCCCE
Q 045186 77 ELYLDGTSIT-EVPSSIELLHGLELLNLNNCKN---LWTTIIYIMAFARSFQFDGKEFISCSFDVVF-SVSISGLLNLKE 151 (411)
Q Consensus 77 ~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~---~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~l-p~~l~~l~~L~~ 151 (411)
.++++.|.+. ..|..+..+++|+.|++++|.. ..+..+..+++|+.|+|++|++++ + |..+..+++|+.
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~------l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ------LSPTAFNSLSSLQV 522 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC------cChHHHcCCCCCCE
Confidence 4444444444 2222334444444444444431 112224444444444444444444 3 233444444444
Q ss_pred ecccCc
Q 045186 152 LELEDC 157 (411)
Q Consensus 152 L~L~~c 157 (411)
|+|++|
T Consensus 523 L~Ls~N 528 (635)
T 4g8a_A 523 LNMSHN 528 (635)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 444443
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=119.54 Aligned_cols=98 Identities=26% Similarity=0.385 Sum_probs=52.9
Q ss_pred EEEEeCCCCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCC
Q 045186 6 ELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTS 84 (411)
Q Consensus 6 ~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~ 84 (411)
+++++++.++.+|..+. ++|++|+|++| .+..+|..+..+++|+.|+|++|. +..++ ..+.++++|++|+|++|.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc
Confidence 45556666666665432 45666666653 445555555566666666666643 33333 345556666666666666
Q ss_pred CCccCh-hhhccCCCCEEecCCCC
Q 045186 85 ITEVPS-SIELLHGLELLNLNNCK 107 (411)
Q Consensus 85 i~~lp~-~i~~l~~L~~L~L~~~~ 107 (411)
|+.++. .+..+++|+.|+|++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC
Confidence 664443 34444445544444443
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=1.1e-13 Score=135.34 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=111.5
Q ss_pred CceeEEEEeCCCCCccc-----ccccCCC-CccEEEEecCCCCcccccccCCC-----CCccEEEeeCCCCCcccchh--
Q 045186 2 ECLRELLLDGTDIKELP-----VSIELLS-GLVQLSLKGCKNLLSLPIAISSL-----KCLRNLKLSGCSKLKKFPQI-- 68 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-----~si~~l~-~L~~L~L~~c~~l~~lp~~i~~l-----~~L~~L~Ls~c~~l~~lp~~-- 68 (411)
++|++|+|++|.|..++ ..+.+++ +|++|+|++|......+..+..+ ++|++|+|++|......+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 35888888888888665 4577777 88888888864333334444443 78888888886533333332
Q ss_pred --ccCC-CCCcEEEccCCCCCccCh-hh----hc-cCCCCEEecCCCCCCh------hHHHhhcc-ccceeecCCCCccc
Q 045186 69 --VASM-EDLLELYLDGTSITEVPS-SI----EL-LHGLELLNLNNCKNLW------TTIIYIMA-FARSFQFDGKEFIS 132 (411)
Q Consensus 69 --l~~l-~~L~~L~L~~~~i~~lp~-~i----~~-l~~L~~L~L~~~~~~~------~~~l~~l~-~L~~L~Ls~n~~~~ 132 (411)
+..+ ++|+.|+|++|.++..+. .+ .. .++|+.|++++|.... ...+..++ +|++|+|++|.+..
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3444 788888888888885553 22 23 3588888888887221 12244554 88888888888876
Q ss_pred cccccccchhhhcC-CCCCEecccCcccccc-----cCC----CCCCCceEEecCC
Q 045186 133 CSFDVVFSVSISGL-LNLKELELEDCKRLQS-----LPQ----IPPNLWLVRANGC 178 (411)
Q Consensus 133 ~~~~~~lp~~l~~l-~~L~~L~L~~c~~l~~-----lp~----l~~~L~~L~~~~c 178 (411)
. ....+...+..+ ++|+.|+|++|. ++. ++. .+++|++|++++|
T Consensus 182 ~-~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 182 K-NCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp S-CHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred h-hHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 0 000011234445 588888888875 433 332 3467888888776
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=9.3e-15 Score=130.69 Aligned_cols=125 Identities=22% Similarity=0.305 Sum_probs=78.1
Q ss_pred eeEEEEeCC--CCCcccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEcc
Q 045186 4 LRELLLDGT--DIKELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLD 81 (411)
Q Consensus 4 L~~L~L~~~--~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~ 81 (411)
|+.+.+.++ .++.+|..++.+++|++|+|++| .+..+| .+..+++|++|++++| .+..+|..++.+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 444455443 45555556777777777777764 455566 5666677777777774 345666666566677777777
Q ss_pred CCCCCccChhhhccCCCCEEecCCCCCCh-h--HHHhhccccceeecCCCCccc
Q 045186 82 GTSITEVPSSIELLHGLELLNLNNCKNLW-T--TIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 82 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~--~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+|.++.+| .++.+++|+.|++++|.... + ..+..+++|+.|++++|.+..
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 77777665 46666777777777665322 1 236666677777777766655
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=8.2e-13 Score=117.51 Aligned_cols=123 Identities=18% Similarity=0.264 Sum_probs=101.3
Q ss_pred cEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch--hccCCCCCcEEEccCCCCCcc-ChhhhccCCCCEEecC
Q 045186 28 VQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ--IVASMEDLLELYLDGTSITEV-PSSIELLHGLELLNLN 104 (411)
Q Consensus 28 ~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~--~l~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 104 (411)
+.+++++ +.++.+|..+.. +|++|++++| .++.++. .++.+++|++|+|++|.|+.+ |..+..+++|+.|+|+
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 6889888 577889886643 8999999995 5666665 388999999999999999966 6789999999999999
Q ss_pred CCCC--ChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccCccc
Q 045186 105 NCKN--LWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKR 159 (411)
Q Consensus 105 ~~~~--~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~ 159 (411)
+|.. ..+..+..+++|+.|+|++|.+++ ..|..+..+++|+.|+|++|+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISC-----VMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCE-----ECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCe-----eCHHHhhcCCCCCEEEeCCCCc
Confidence 9983 333447889999999999999988 2367788899999999998864
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=1.1e-12 Score=135.91 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=94.2
Q ss_pred CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCC
Q 045186 26 GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105 (411)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 105 (411)
.|+.|+|++| .+..+|. +..+++|+.|+|++| .+..+|..++.+++|+.|+|++|.|+.+| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 4788888885 6667876 888888888888885 56688888888888888888888888887 788888888888888
Q ss_pred CC--CCh-hHHHhhccccceeecCCCCccccccccccchhh----hcCCCCCEecc
Q 045186 106 CK--NLW-TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSI----SGLLNLKELEL 154 (411)
Q Consensus 106 ~~--~~~-~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l----~~l~~L~~L~L 154 (411)
|. ... +..++.+++|+.|+|++|.+++ +|..+ ..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~------~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ------EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGG------SSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCC------CccHHHHHHHHCcccCccCC
Confidence 87 232 5668888899999999999888 66433 44788988864
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=1.9e-12 Score=113.26 Aligned_cols=124 Identities=22% Similarity=0.350 Sum_probs=83.1
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccccc-ccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccC
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLPI-AISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDG 82 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~ 82 (411)
+.+++++++++.+|..+ .++|+.|+|++|. +..+|. .+..+++|++|++++| .+..+|. .++.+++|+.|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 56777888888887644 3678888888854 555554 3567888888888885 4555554 457788888888888
Q ss_pred CCCCccChh-hhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCccc
Q 045186 83 TSITEVPSS-IELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 83 ~~i~~lp~~-i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
|.++.+|.. +..+++|+.|++++|. ......+..+++|+.|+|++|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 888876654 4667777777777665 2222334556666666666666554
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=2.3e-13 Score=133.12 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=121.4
Q ss_pred ceeEEEEeCCCCCcc-cccccCC-----CCccEEEEecCCCCcccccc----cCCC-CCccEEEeeCCCCCcccc-hh--
Q 045186 3 CLRELLLDGTDIKEL-PVSIELL-----SGLVQLSLKGCKNLLSLPIA----ISSL-KCLRNLKLSGCSKLKKFP-QI-- 68 (411)
Q Consensus 3 ~L~~L~L~~~~l~~l-p~si~~l-----~~L~~L~L~~c~~l~~lp~~----i~~l-~~L~~L~Ls~c~~l~~lp-~~-- 68 (411)
+|++|+|++|.|... +..+..+ ++|++|+|++|......+.. +..+ ++|++|+|++|. ++..+ ..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHH
Confidence 799999999999855 4445554 89999999997533333332 4445 799999999976 44333 22
Q ss_pred --ccC-CCCCcEEEccCCCCC-----ccChhhhccC-CCCEEecCCCCCC--hhH----HHhhc-cccceeecCCCCccc
Q 045186 69 --VAS-MEDLLELYLDGTSIT-----EVPSSIELLH-GLELLNLNNCKNL--WTT----IIYIM-AFARSFQFDGKEFIS 132 (411)
Q Consensus 69 --l~~-l~~L~~L~L~~~~i~-----~lp~~i~~l~-~L~~L~L~~~~~~--~~~----~l~~l-~~L~~L~Ls~n~~~~ 132 (411)
+.. .++|++|+|++|.++ .++..+..++ +|+.|+|++|... ... .+..+ ++|+.|+|++|.+..
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 444 369999999999988 4445556665 9999999999732 221 24555 599999999998876
Q ss_pred cccccccchhhhcC-CCCCEecccCcccccccC--------CCCCCCceEEecCCC
Q 045186 133 CSFDVVFSVSISGL-LNLKELELEDCKRLQSLP--------QIPPNLWLVRANGCS 179 (411)
Q Consensus 133 ~~~~~~lp~~l~~l-~~L~~L~L~~c~~l~~lp--------~l~~~L~~L~~~~c~ 179 (411)
.....++..+..+ ++|+.|+|++|. ++..+ .-.++|+.|++++|.
T Consensus 211 -~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 211 -KSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp -SCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred -hHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 2223355566664 599999999975 44332 223678888888774
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.35 E-value=5.1e-13 Score=134.21 Aligned_cols=170 Identities=21% Similarity=0.206 Sum_probs=122.5
Q ss_pred CceeEEEEeCCCCCc-----ccccccCCCCccEEEEecCCCCcc-----c-ccccCCCCCccEEEeeCCCCCcc-----c
Q 045186 2 ECLRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCKNLLS-----L-PIAISSLKCLRNLKLSGCSKLKK-----F 65 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~~l~~-----l-p~~i~~l~~L~~L~Ls~c~~l~~-----l 65 (411)
++|++|+|++|.++. ++..+..+++|++|+|++| .++. + +.....+++|++|++++|. ++. +
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l 276 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDL 276 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHH
Confidence 589999999999885 5777888999999999997 4443 2 2223368899999999974 544 7
Q ss_pred chhccCCCCCcEEEccCCCCC-ccChhhhc-----cCCCCEEecCCCCCCh------hHHHhhccccceeecCCCCcccc
Q 045186 66 PQIVASMEDLLELYLDGTSIT-EVPSSIEL-----LHGLELLNLNNCKNLW------TTIIYIMAFARSFQFDGKEFISC 133 (411)
Q Consensus 66 p~~l~~l~~L~~L~L~~~~i~-~lp~~i~~-----l~~L~~L~L~~~~~~~------~~~l~~l~~L~~L~Ls~n~~~~~ 133 (411)
+..+..+++|++|++++|.++ ..+..+.. .++|+.|++++|.... ...+..+++|+.|+|++|.+..
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~- 355 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED- 355 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-
Confidence 777888899999999999887 22223332 2689999999988432 2336778899999999998776
Q ss_pred cccccc-chhhhc-----CCCCCEecccCccccc----ccCCC---CCCCceEEecCCC
Q 045186 134 SFDVVF-SVSISG-----LLNLKELELEDCKRLQ----SLPQI---PPNLWLVRANGCS 179 (411)
Q Consensus 134 ~~~~~l-p~~l~~-----l~~L~~L~L~~c~~l~----~lp~l---~~~L~~L~~~~c~ 179 (411)
. +..+.. .++|+.|++++|..-. .+|.. .++|++|++++|.
T Consensus 356 -----~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 356 -----AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp -----HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred -----ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 3 223322 6789999999885321 34432 3678888888763
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.2e-12 Score=113.09 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=89.3
Q ss_pred CceeEEEEeCCCCCcccccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEE
Q 045186 2 ECLRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELY 79 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~ 79 (411)
++|++|+|++|.|+.+|..+.++++|+.|+|++| .+..++ ..+..+++|++|+|++|. +..++ ..++.+++|+.|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEE
Confidence 4799999999999999999999999999999996 455554 568899999999999965 55555 5789999999999
Q ss_pred ccCCCCCccChh-hhccCCCCEEecCCCC
Q 045186 80 LDGTSITEVPSS-IELLHGLELLNLNNCK 107 (411)
Q Consensus 80 L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (411)
|++|.|+.+|.. +..+++|+.|++++|.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 999999988874 7778888888888776
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=7.3e-12 Score=109.52 Aligned_cols=124 Identities=20% Similarity=0.302 Sum_probs=100.4
Q ss_pred ccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecC
Q 045186 27 LVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLN 104 (411)
Q Consensus 27 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 104 (411)
.+.+++++ +.+..+|..+ .++|+.|++++|. +..+|. .++.+++|++|++++|.++.+|.. ++.+++|+.|+++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 56788887 5678888654 4799999999965 556654 568899999999999999988765 6889999999999
Q ss_pred CCC--CChhHHHhhccccceeecCCCCccccccccccchh-hhcCCCCCEecccCcccc
Q 045186 105 NCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVS-ISGLLNLKELELEDCKRL 160 (411)
Q Consensus 105 ~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~-l~~l~~L~~L~L~~c~~l 160 (411)
+|. ......+..+++|+.|++++|.+++ +|.. +..+++|+.|++++|+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS------VPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceE------eCHHHhcCCcccCEEEecCCCee
Confidence 997 3334457889999999999999988 8865 477899999999988643
No 129
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.32 E-value=8.8e-13 Score=132.46 Aligned_cols=175 Identities=21% Similarity=0.204 Sum_probs=130.7
Q ss_pred CCceeEEEEeCCCCCcc-ccccc-----CCCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCCCCCcc-----
Q 045186 1 MECLRELLLDGTDIKEL-PVSIE-----LLSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGCSKLKK----- 64 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~l-p~si~-----~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~~----- 64 (411)
+++|++|+|++|.+... +..+. ..++|++|+|++|. +.. ++..+..+++|++|++++|. ++.
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~ 246 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAE 246 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHH
Confidence 47899999999998743 22232 36799999999974 443 67777789999999999974 443
Q ss_pred c-chhccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCChhH--HHh-----hccccceeecCCCCcc
Q 045186 65 F-PQIVASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLWTT--IIY-----IMAFARSFQFDGKEFI 131 (411)
Q Consensus 65 l-p~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~~--~l~-----~l~~L~~L~Ls~n~~~ 131 (411)
+ +.....+++|+.|++++|.++. ++..+..+++|+.|++++|...... .+. ..++|+.|++++|.++
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 2 2233468999999999999996 7888889999999999999732221 122 2369999999999987
Q ss_pred ccccccccchhhhcCCCCCEecccCccccccc---------CCCCCCCceEEecCCC
Q 045186 132 SCSFDVVFSVSISGLLNLKELELEDCKRLQSL---------PQIPPNLWLVRANGCS 179 (411)
Q Consensus 132 ~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~l---------p~l~~~L~~L~~~~c~ 179 (411)
. .....++..+..+++|+.|+|++|. ++.. ....++|+.|++++|.
T Consensus 327 ~-~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 327 A-ACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp G-GGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred h-HHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 6 1122256778889999999999985 4332 1124689999999883
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=4e-14 Score=126.55 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=106.4
Q ss_pred ccEEEEecC-CCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChhhhccCCCCEEecCC
Q 045186 27 LVQLSLKGC-KNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSSIELLHGLELLNLNN 105 (411)
Q Consensus 27 L~~L~L~~c-~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 105 (411)
|+.+.+.++ ..++.+|..+..+++|++|++++| .+..+| .++.+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 444444442 134556668889999999999996 566688 78889999999999999999999899999999999999
Q ss_pred CCCChhHHHhhccccceeecCCCCccccccccccch--hhhcCCCCCEecccCcccccccC
Q 045186 106 CKNLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSV--SISGLLNLKELELEDCKRLQSLP 164 (411)
Q Consensus 106 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~--~l~~l~~L~~L~L~~c~~l~~lp 164 (411)
|.......+..+++|+.|++++|.+.. ++. .+..+++|+.|++++|+....+|
T Consensus 103 N~l~~l~~~~~l~~L~~L~l~~N~i~~------~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 103 NQIASLSGIEKLVNLRVLYMSNNKITN------WGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EECCCHHHHHHHHHSSEEEESEEECCC------HHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CcCCcCCccccCCCCCEEECCCCcCCc------hhHHHHHhcCCCCCEEEecCCccccccc
Confidence 984444468899999999999999998 774 78899999999999987544433
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=7e-12 Score=129.91 Aligned_cols=127 Identities=19% Similarity=0.117 Sum_probs=60.6
Q ss_pred CCCCccEEEEecCCCCcccccccCC-CC-CccEEEeeCCCCCc--ccchhccCCCCCcEEEccCCCCCc-----cChhhh
Q 045186 23 LLSGLVQLSLKGCKNLLSLPIAISS-LK-CLRNLKLSGCSKLK--KFPQIVASMEDLLELYLDGTSITE-----VPSSIE 93 (411)
Q Consensus 23 ~l~~L~~L~L~~c~~l~~lp~~i~~-l~-~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~ 93 (411)
++++|++|+|++|......+..+.. ++ +|++|+|++|..+. .++.....+++|++|+|++|.++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5666666666665322222222322 22 36666666654221 122233345566666666665431 223344
Q ss_pred ccCCCCEEecCCCCCC--h----hHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEeccc
Q 045186 94 LLHGLELLNLNNCKNL--W----TTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELE 155 (411)
Q Consensus 94 ~l~~L~~L~L~~~~~~--~----~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~ 155 (411)
.+++|+.|++++|... . ...+..+++|+.|++++|.+.+ +|..+..+++|+.|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~------l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE------LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG------GHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH------HHHHHhhhhHHHhhccc
Confidence 5556666666555422 1 1124455566666666655554 44444444444444443
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=7.2e-11 Score=103.28 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=57.4
Q ss_pred eEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEEccC
Q 045186 5 RELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELYLDG 82 (411)
Q Consensus 5 ~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~~ 82 (411)
+.++++++.+..+|..+. ++|++|+|++|. +..+ |..+..+++|++|+|++| .+..+|.. ++.+++|+.|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 456666666666665443 566666666643 3333 445566666666666663 45555543 35666666666666
Q ss_pred CCCCccChh-hhccCCCCEEecCCCC
Q 045186 83 TSITEVPSS-IELLHGLELLNLNNCK 107 (411)
Q Consensus 83 ~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (411)
|.|+.+|.. +..+++|+.|+|++|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CccceeCHHHhccccCCCEEEeCCCC
Confidence 666665553 5555555555555554
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=6.6e-11 Score=103.03 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=66.6
Q ss_pred eeEEEEeCCCCCcccccccCCCCccEEEEecCCCCccc-ccccCCCCCccEEEeeCCCCCcccchh-ccCCCCCcEEEcc
Q 045186 4 LRELLLDGTDIKELPVSIELLSGLVQLSLKGCKNLLSL-PIAISSLKCLRNLKLSGCSKLKKFPQI-VASMEDLLELYLD 81 (411)
Q Consensus 4 L~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~l-p~~i~~l~~L~~L~Ls~c~~l~~lp~~-l~~l~~L~~L~L~ 81 (411)
.+.|+++++.++.+|..+. ++|++|+|++| .+..+ |..+..+++|++|+|++| .+..+|.. +..+++|+.|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 3567777777777776553 67777777775 44444 555677777777777774 45555543 4677777777777
Q ss_pred CCCCCccChh-hhccCCCCEEecCCCC
Q 045186 82 GTSITEVPSS-IELLHGLELLNLNNCK 107 (411)
Q Consensus 82 ~~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (411)
+|.|+.+|.. +..+++|+.|+|++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7777766653 5666666666666654
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1e-10 Score=102.31 Aligned_cols=103 Identities=17% Similarity=0.239 Sum_probs=74.2
Q ss_pred ccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecCC
Q 045186 27 LVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLNN 105 (411)
Q Consensus 27 L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~ 105 (411)
-+.+++++ +.++.+|..+. ++|++|+|++|...+..|..++++++|+.|+|++|.|+.+|.. +..+++|+.|+|++
T Consensus 14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36788887 46788887663 7888888888554333466788888888888888888888765 46778888888877
Q ss_pred CC--CChhHHHhhccccceeecCCCCccc
Q 045186 106 CK--NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 106 ~~--~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
|. .+....+..+++|+.|+|++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 76 2333346667777777777776665
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.13 E-value=3.4e-11 Score=124.65 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=80.8
Q ss_pred CCceeEEEEeCCC-CCcc---c------------ccccCCCCccEEEEecCCCCcccccccC-CCCCccEEEeeCCCCCc
Q 045186 1 MECLRELLLDGTD-IKEL---P------------VSIELLSGLVQLSLKGCKNLLSLPIAIS-SLKCLRNLKLSGCSKLK 63 (411)
Q Consensus 1 l~~L~~L~L~~~~-l~~l---p------------~si~~l~~L~~L~L~~c~~l~~lp~~i~-~l~~L~~L~Ls~c~~l~ 63 (411)
+++|++|+|+++. +..+ | .....+++|++|+|++|......+..+. .+++|++|+|++|..++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 3567777777753 2211 1 1134566777777777643333333333 46677777777765544
Q ss_pred c--cchhccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCC-CChhH----HHhhccccceeecCCC-Cc
Q 045186 64 K--FPQIVASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCK-NLWTT----IIYIMAFARSFQFDGK-EF 130 (411)
Q Consensus 64 ~--lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~-~~~~~----~l~~l~~L~~L~Ls~n-~~ 130 (411)
. ++....++++|++|+|++|.++. ++.....+++|+.|++++|. ..... .+..+++|+.|++++| .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 3 44545566777777777776542 22222355677777777665 22211 1344577777777766 33
Q ss_pred cccccccccchhhhcCCCCCEec
Q 045186 131 ISCSFDVVFSVSISGLLNLKELE 153 (411)
Q Consensus 131 ~~~~~~~~lp~~l~~l~~L~~L~ 153 (411)
.. +|..+..+++|+.|+
T Consensus 225 ~~------l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 225 EK------LATLLQRAPQLEELG 241 (594)
T ss_dssp HH------HHHHHHHCTTCSEEE
T ss_pred HH------HHHHHhcCCcceEcc
Confidence 33 444455555555554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=1.8e-10 Score=100.18 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=72.9
Q ss_pred CccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecC
Q 045186 26 GLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLN 104 (411)
Q Consensus 26 ~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 104 (411)
..+.|++++ +.+..+|..+ .++|++|+|++|...+..|..++.+++|++|+|++|.|+.+|.. +..+++|+.|+|+
T Consensus 10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356788887 4677788765 37888888888543333366678888888888888888877765 4677777777777
Q ss_pred CCC--CChhHHHhhccccceeecCCCCccc
Q 045186 105 NCK--NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 105 ~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+|. .+.+..+..+++|+.|+|++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 776 2333346667777777777776654
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.10 E-value=8e-11 Score=121.92 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=49.3
Q ss_pred CCceeEEEEeCCCCCc-----ccccccCCCCccEEEEecCCCC----cccccccCCCCCccEEEeeCCCCCcccchhccC
Q 045186 1 MECLRELLLDGTDIKE-----LPVSIELLSGLVQLSLKGCKNL----LSLPIAISSLKCLRNLKLSGCSKLKKFPQIVAS 71 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~-----lp~si~~l~~L~~L~L~~c~~l----~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~ 71 (411)
+++|++|+|++|.+.. ++..+.++++|+.|+|++|... ..++..+.++++|+.|++++|. +..+|..++.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhh
Confidence 4678888888876542 3333556777777777765432 2344445567777777777753 3445555555
Q ss_pred CCCCcEEEcc
Q 045186 72 MEDLLELYLD 81 (411)
Q Consensus 72 l~~L~~L~L~ 81 (411)
+++|+.|+++
T Consensus 242 ~~~L~~L~l~ 251 (592)
T 3ogk_B 242 AANLEEFCGG 251 (592)
T ss_dssp CTTCCEEEEC
T ss_pred hhHHHhhccc
Confidence 6666666665
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.08 E-value=1.2e-11 Score=128.18 Aligned_cols=171 Identities=14% Similarity=0.138 Sum_probs=105.7
Q ss_pred CCceeEEEEeCC-CCCc--ccccccCCCCccEEEEecCCCCc-----ccccccCCCCCccEEEeeCCC-CC--cccchhc
Q 045186 1 MECLRELLLDGT-DIKE--LPVSIELLSGLVQLSLKGCKNLL-----SLPIAISSLKCLRNLKLSGCS-KL--KKFPQIV 69 (411)
Q Consensus 1 l~~L~~L~L~~~-~l~~--lp~si~~l~~L~~L~L~~c~~l~-----~lp~~i~~l~~L~~L~Ls~c~-~l--~~lp~~l 69 (411)
+++|++|+|++| .+.. ++..+.++++|++|+|++|. +. .++.....+++|+.|++++|. .+ ..++..+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 478999999988 5553 55555688999999998875 22 233334467788888888875 12 2233334
Q ss_pred cCCCCCcEEEccCC-CCCccChhhhccCCCCEEecCCCCC--------------------------------ChhHHHhh
Q 045186 70 ASMEDLLELYLDGT-SITEVPSSIELLHGLELLNLNNCKN--------------------------------LWTTIIYI 116 (411)
Q Consensus 70 ~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~--------------------------------~~~~~l~~ 116 (411)
..+++|+.|++++| .+..+|..+..+++|+.|+++.+.. ..+..+..
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 55788888888887 4446777777778888887655431 01112345
Q ss_pred ccccceeecCCCCccccccccccchhhhcCCCCCEecccCcccccccCC---CCCCCceEEec
Q 045186 117 MAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELEDCKRLQSLPQ---IPPNLWLVRAN 176 (411)
Q Consensus 117 l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~~L~~L~~~ 176 (411)
+++|+.|+|++|.+.. ..++..+..+++|+.|++++|..-..++. ..++|+.|++.
T Consensus 288 ~~~L~~L~L~~~~l~~----~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQS----YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp HTTCCEEECTTCCCCH----HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred hCCCCEEEccCCCCCH----HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEe
Confidence 6777777777776543 11223345677777777777622111211 13567777663
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.06 E-value=3.2e-11 Score=118.52 Aligned_cols=156 Identities=13% Similarity=0.061 Sum_probs=107.4
Q ss_pred CceeEEEEeCCCCCccc-----cccc-CCCCccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCcc----cchhc-
Q 045186 2 ECLRELLLDGTDIKELP-----VSIE-LLSGLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKK----FPQIV- 69 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~lp-----~si~-~l~~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~----lp~~l- 69 (411)
++|++|+|++|.|.... ..+. +.++|+.|+|++|..... +......+++|+.|+|++|..... +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57899999999987432 2223 237899999999753222 112122456899999999754322 22223
Q ss_pred cCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCChh------HHHhhccccceeecCCCCccccccccc
Q 045186 70 ASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLWT------TIIYIMAFARSFQFDGKEFISCSFDVV 138 (411)
Q Consensus 70 ~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~L~Ls~n~~~~~~~~~~ 138 (411)
...++|++|+|++|.|+. ++..+..+++|++|+|++|..... ..+...++|+.|+|++|.++. .....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~-~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD-TAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH-HHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH-HHHHH
Confidence 346789999999999863 455567789999999999983322 236677899999999998875 11122
Q ss_pred cchhhhcCCCCCEecccCcc
Q 045186 139 FSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 139 lp~~l~~l~~L~~L~L~~c~ 158 (411)
++..+...++|+.|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 44556677899999999885
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=6.9e-10 Score=107.35 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=72.0
Q ss_pred EEEEeCC-CCCcccccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCccc-chhccCCCCCcEEEccC
Q 045186 6 ELLLDGT-DIKELPVSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKF-PQIVASMEDLLELYLDG 82 (411)
Q Consensus 6 ~L~L~~~-~l~~lp~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l~~L~~L~L~~ 82 (411)
.++++++ +|+.+|. +..+++|+.|+|++++.+..+| ..+..|++|+.|+|++|. +..+ |..++++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 7888888 8888888888888645666665 457788888888888854 4444 44677888888888888
Q ss_pred CCCCccChhhhccCCCCEEecCCCC
Q 045186 83 TSITEVPSSIELLHGLELLNLNNCK 107 (411)
Q Consensus 83 ~~i~~lp~~i~~l~~L~~L~L~~~~ 107 (411)
|.|+.+|..+.....|+.|+|.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 8888777655443347777777665
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=5e-10 Score=107.74 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=43.3
Q ss_pred CCceeEEEEeCCCCC--------------------cccc-cccC--------CCCccEEEEecCCCCccccc-ccCCCCC
Q 045186 1 MECLRELLLDGTDIK--------------------ELPV-SIEL--------LSGLVQLSLKGCKNLLSLPI-AISSLKC 50 (411)
Q Consensus 1 l~~L~~L~L~~~~l~--------------------~lp~-si~~--------l~~L~~L~L~~c~~l~~lp~-~i~~l~~ 50 (411)
+++|+.|+|++|.|. .+|. .|.+ +++|+.|+|.+ .+..++. .+.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 468999999998887 3433 3667 88999999887 5666654 4778899
Q ss_pred ccEEEeeCCC
Q 045186 51 LRNLKLSGCS 60 (411)
Q Consensus 51 L~~L~Ls~c~ 60 (411)
|+.|+++++.
T Consensus 126 L~~l~l~~n~ 135 (329)
T 3sb4_A 126 LKICQIRKKT 135 (329)
T ss_dssp CCEEEBCCSS
T ss_pred cceEEcCCCC
Confidence 9999998854
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=1.9e-09 Score=104.17 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=78.7
Q ss_pred EEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCC
Q 045186 29 QLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNC 106 (411)
Q Consensus 29 ~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~ 106 (411)
.+++++++.+..+|. +..+++|+.|+|++++.++.+| ..++++++|+.|+|++|.|+.+|. .++.+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457776447888998 8889999999998756677776 568889999999999999996655 5788889999998888
Q ss_pred C--CChhHHHhhccccceeecCCCCccc
Q 045186 107 K--NLWTTIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 107 ~--~~~~~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
. .+.+..+..++ |+.|+|.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7 33333445454 8888888887764
No 143
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=5.6e-09 Score=101.99 Aligned_cols=56 Identities=27% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCCCCccEEEeeCCCCCcccchhccCCCCCcEEEccCCCCC-ccChhhh--ccCCCCEEecC
Q 045186 46 SSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYLDGTSIT-EVPSSIE--LLHGLELLNLN 104 (411)
Q Consensus 46 ~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~i~--~l~~L~~L~L~ 104 (411)
..+++|+.|+|++|..+ .++. +. +++|++|+|..+.+. +....+. .+++|+.|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34555566665554222 2222 22 455555555555544 1112222 45555555553
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=3.5e-09 Score=103.93 Aligned_cols=129 Identities=17% Similarity=0.094 Sum_probs=98.0
Q ss_pred CceeEEEEeCCCCCc--ccccccCCCCccEEEEecCCCCcc-----ccccc-CCCCCccEEEeeCCCCCc-----ccchh
Q 045186 2 ECLRELLLDGTDIKE--LPVSIELLSGLVQLSLKGCKNLLS-----LPIAI-SSLKCLRNLKLSGCSKLK-----KFPQI 68 (411)
Q Consensus 2 ~~L~~L~L~~~~l~~--lp~si~~l~~L~~L~L~~c~~l~~-----lp~~i-~~l~~L~~L~Ls~c~~l~-----~lp~~ 68 (411)
++|++|+|++|.|.. +..-...+++|+.|+|++|. ++. +...+ ...++|++|+|++|. ++ .++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 589999999999873 22223456789999999974 432 22222 346789999999975 43 35566
Q ss_pred ccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCChh------HHHhhccccceeecCCCCccc
Q 045186 69 VASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLWT------TIIYIMAFARSFQFDGKEFIS 132 (411)
Q Consensus 69 l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~------~~l~~l~~L~~L~Ls~n~~~~ 132 (411)
+..+++|++|+|++|.|+. ++..+...++|+.|+|++|..... ..+...++|++|+|++|.+..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7788999999999999873 355677889999999999984432 225677999999999999876
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1.4e-08 Score=97.52 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=116.5
Q ss_pred CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeC-----------------CCC
Q 045186 1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSG-----------------CSK 61 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~-----------------c~~ 61 (411)
+++|+.|+|.. .++.|+. +|.++++|+.|+|.++. +..++ ..+..+.++..+.+.. |..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 47899999998 8888875 49999999999999854 43443 3344444454444322 222
Q ss_pred Cc---------ccchh----------------------------ccCCCCCcEEEccCCCCCccChh-hhccCCCCEEec
Q 045186 62 LK---------KFPQI----------------------------VASMEDLLELYLDGTSITEVPSS-IELLHGLELLNL 103 (411)
Q Consensus 62 l~---------~lp~~----------------------------l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L 103 (411)
++ .++.. ...+++|+.|+|.+|.++.+|.. +..+.+|+.|++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 21 11110 01278999999999999998875 788999999999
Q ss_pred CCCCC-ChhHHHhhccccc-eeecCCCCccccccccccc-hhhhcCCCCCEecccCcccccccCCCCCCCceEEecCCCC
Q 045186 104 NNCKN-LWTTIIYIMAFAR-SFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCKRLQSLPQIPPNLWLVRANGCSS 180 (411)
Q Consensus 104 ~~~~~-~~~~~l~~l~~L~-~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l~~~L~~L~~~~c~~ 180 (411)
.+|-. +....+..+++|+ .|++.+ +++. |+ ..+..|++|+.|+++++ .++.++.-. ..+|++
T Consensus 258 ~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~------I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a-------F~~~~~ 322 (329)
T 3sb4_A 258 PHNLKTIGQRVFSNCGRLAGTLELPA-SVTA------IEFGAFMGCDNLRYVLATGD-KITTLGDEL-------FGNGVP 322 (329)
T ss_dssp CTTCCEECTTTTTTCTTCCEEEEECT-TCCE------ECTTTTTTCTTEEEEEECSS-CCCEECTTT-------TCTTCC
T ss_pred CcccceehHHHhhCChhccEEEEEcc-cceE------EchhhhhCCccCCEEEeCCC-ccCccchhh-------hcCCcc
Confidence 98743 3344589999999 999998 6777 76 67889999999999774 466665421 235666
Q ss_pred CCcc
Q 045186 181 LVTL 184 (411)
Q Consensus 181 L~~l 184 (411)
|+.+
T Consensus 323 L~~l 326 (329)
T 3sb4_A 323 SKLI 326 (329)
T ss_dssp CCEE
T ss_pred hhhh
Confidence 6654
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=4.1e-07 Score=90.04 Aligned_cols=140 Identities=13% Similarity=0.090 Sum_probs=76.5
Q ss_pred ceeEEEEeCCCCCccccc-ccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccchhccCCCCCcEEEc
Q 045186 3 CLRELLLDGTDIKELPVS-IELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQIVASMEDLLELYL 80 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp~s-i~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~L 80 (411)
+|+.+.|..+ ++.|+.. |.++ +|+.+.|.. .+..++ ..+.++.+|+.+++++ +.+..+|...-...+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEe
Confidence 4566666544 5555433 5553 577777764 455554 3455677777777766 456666654333566777776
Q ss_pred cCCCCCccCh-hhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccC
Q 045186 81 DGTSITEVPS-SIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELED 156 (411)
Q Consensus 81 ~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~ 156 (411)
..+ ++.++. .+..+++|+.+.+.++-.. ....+.. .+|+.+.|. ++++. ++ ..+..|++|+.+.+.+
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~~------I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-NGVTN------IASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-TTCCE------ECTTTTTTCTTCCEEEEES
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-CCccE------EChhHhhCCCCCCEEEeCC
Confidence 633 555543 3556666777766654321 1222333 456666653 33444 43 3455566666666554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=3.4e-07 Score=89.32 Aligned_cols=154 Identities=13% Similarity=0.170 Sum_probs=106.0
Q ss_pred CCceeEEEEeCCCCC----------cccccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccchhcc
Q 045186 1 MECLRELLLDGTDIK----------ELPVSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFPQIVA 70 (411)
Q Consensus 1 l~~L~~L~L~~~~l~----------~lp~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~ 70 (411)
+++|+.|.+.+.... .+...+..+++|+.|+|++|..+ .++. + .+++|+.|+|..|.........+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 478999999764321 24455678899999999997433 4554 4 488999999998764333333333
Q ss_pred --CCCCCcEEEccCC--------CCCccChhh--hccCCCCEEecCCCCCChh--HHH---hhccccceeecCCCCcccc
Q 045186 71 --SMEDLLELYLDGT--------SITEVPSSI--ELLHGLELLNLNNCKNLWT--TII---YIMAFARSFQFDGKEFISC 133 (411)
Q Consensus 71 --~l~~L~~L~L~~~--------~i~~lp~~i--~~l~~L~~L~L~~~~~~~~--~~l---~~l~~L~~L~Ls~n~~~~~ 133 (411)
.+++|+.|+|+.+ .+..+...+ ..+++|+.|+|.+|..... ..+ ..+++|+.|+|+.|.+..
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d- 293 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD- 293 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH-
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh-
Confidence 6899999998531 122222222 3579999999999874422 122 357899999999998765
Q ss_pred ccccccchhhhcCCCCCEecccCcc
Q 045186 134 SFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 134 ~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
.....++..+..+++|+.|+|++|.
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHHhhcccCCcceEEECCCCc
Confidence 1122345566788999999999885
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=1.4e-06 Score=86.06 Aligned_cols=155 Identities=14% Similarity=0.193 Sum_probs=110.2
Q ss_pred ceeEEEEeCCCCCccc-ccccCCCCccEEEEecCCCCcccccccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEc
Q 045186 3 CLRELLLDGTDIKELP-VSIELLSGLVQLSLKGCKNLLSLPIAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYL 80 (411)
Q Consensus 3 ~L~~L~L~~~~l~~lp-~si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L 80 (411)
+|+.+.|.. .++.++ .+|.++++|+.++|.+ +.+..+|.......+|+.+.|.. .+..++ ..+.++.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 477788775 677775 4588999999999987 47888887666678999999985 366666 45678889999999
Q ss_pred cCCCCCccChhhhccCCCCEEecCCCCC-ChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccCcc
Q 045186 81 DGTSITEVPSSIELLHGLELLNLNNCKN-LWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCK 158 (411)
Q Consensus 81 ~~~~i~~lp~~i~~l~~L~~L~L~~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~ 158 (411)
..+ ++.++.....-.+|+.+.+.++-. +....+..+++|+.+.+.+|.+..+ ....++ ..+..|++|+.+.|.+
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~-~~~~I~~~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDD-PEAMIHPYCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCC-TTCEECTTTTTTCTTCCEECCCT--
T ss_pred CCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCC-cccEECHHHhhCCccCCeEEeCC--
Confidence 864 666665433337899998865542 3345588889999999988766510 000144 5678888999988874
Q ss_pred cccccCC
Q 045186 159 RLQSLPQ 165 (411)
Q Consensus 159 ~l~~lp~ 165 (411)
.++.++.
T Consensus 310 ~i~~I~~ 316 (401)
T 4fdw_A 310 SIRILGQ 316 (401)
T ss_dssp TCCEECT
T ss_pred ceEEEhh
Confidence 3555554
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=5.4e-07 Score=78.43 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=49.9
Q ss_pred CCcEEEccCCCCC-ccChhhhccCCCCEEecCCCCCChhHH---Hhhc----cccceeecCCCC-ccccccccccchhhh
Q 045186 74 DLLELYLDGTSIT-EVPSSIELLHGLELLNLNNCKNLWTTI---IYIM----AFARSFQFDGKE-FISCSFDVVFSVSIS 144 (411)
Q Consensus 74 ~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~~~---l~~l----~~L~~L~Ls~n~-~~~~~~~~~lp~~l~ 144 (411)
+|+.||+++|.|+ .--..+..+++|+.|+|++|..+.+.. +..+ ++|++|+|++|. ++. ..+ ..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----~Gl-~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----KGI-IALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH----HHH-HHGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH----HHH-HHHh
Confidence 4566666666655 222345667777777777777666554 3322 357777777764 433 112 2355
Q ss_pred cCCCCCEecccCcccccc
Q 045186 145 GLLNLKELELEDCKRLQS 162 (411)
Q Consensus 145 ~l~~L~~L~L~~c~~l~~ 162 (411)
.+++|+.|+|++|+.+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 677777777777776654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=6e-07 Score=78.95 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=37.5
Q ss_pred ccCCCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCCCCCc----ccchhccCCCCCcEEEccCCCCCc----
Q 045186 21 IELLSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGCSKLK----KFPQIVASMEDLLELYLDGTSITE---- 87 (411)
Q Consensus 21 i~~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l~----~lp~~l~~l~~L~~L~L~~~~i~~---- 87 (411)
+...++|++|+|++|..++. +...+...++|++|+|++|..-. .+...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 34455555555555423321 23334444555555555543211 122333334455555555555542
Q ss_pred -cChhhhccCCCCEEec
Q 045186 88 -VPSSIELLHGLELLNL 103 (411)
Q Consensus 88 -lp~~i~~l~~L~~L~L 103 (411)
+...+...++|+.|+|
T Consensus 112 ~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 112 ALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEe
Confidence 2333444445555555
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=7.7e-07 Score=78.22 Aligned_cols=117 Identities=8% Similarity=0.053 Sum_probs=87.7
Q ss_pred cccccCCCCCccEEEeeCCCCCc-----ccchhccCCCCCcEEEccCCCCCc-----cChhhhccCCCCEEecCCCCCCh
Q 045186 41 LPIAISSLKCLRNLKLSGCSKLK-----KFPQIVASMEDLLELYLDGTSITE-----VPSSIELLHGLELLNLNNCKNLW 110 (411)
Q Consensus 41 lp~~i~~l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~ 110 (411)
+...+...++|++|+|++|..++ .+...+...++|++|+|++|.|.. +...+...++|+.|+|++|....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34456678999999999973453 355667778999999999999973 44456677899999999998444
Q ss_pred h------HHHhhccccceeec--CCCCccccccccccchhhhcCCCCCEecccCcc
Q 045186 111 T------TIIYIMAFARSFQF--DGKEFISCSFDVVFSVSISGLLNLKELELEDCK 158 (411)
Q Consensus 111 ~------~~l~~l~~L~~L~L--s~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~c~ 158 (411)
. ..+...++|++|+| ++|.+.. .....+...+...++|+.|+|++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~-~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGN-NVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCH-HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCH-HHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3 23667789999999 8888765 1222244566777999999999875
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=1.8e-06 Score=75.14 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=41.4
Q ss_pred CccEEEEecCCCCcc-cccccCCCCCccEEEeeCCCCCccc-chhccCC----CCCcEEEccCC-CCC-ccChhhhccCC
Q 045186 26 GLVQLSLKGCKNLLS-LPIAISSLKCLRNLKLSGCSKLKKF-PQIVASM----EDLLELYLDGT-SIT-EVPSSIELLHG 97 (411)
Q Consensus 26 ~L~~L~L~~c~~l~~-lp~~i~~l~~L~~L~Ls~c~~l~~l-p~~l~~l----~~L~~L~L~~~-~i~-~lp~~i~~l~~ 97 (411)
+|+.|||++|. ++. --..+..+++|+.|+|++|..++.- -..+..+ ++|+.|+|++| .|+ .--..+.++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 56666666664 332 1122456666666666666655421 1223332 24566666655 255 11223445556
Q ss_pred CCEEecCCCCCC
Q 045186 98 LELLNLNNCKNL 109 (411)
Q Consensus 98 L~~L~L~~~~~~ 109 (411)
|+.|+|++|..+
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 666666665543
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=4.2e-05 Score=71.06 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=37.1
Q ss_pred cCCCCCcEEEccCCCCCccC---hhhhccCCCCEEecCCCCCChhHHHhhcc--ccceeecCCCCccc
Q 045186 70 ASMEDLLELYLDGTSITEVP---SSIELLHGLELLNLNNCKNLWTTIIYIMA--FARSFQFDGKEFIS 132 (411)
Q Consensus 70 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~~~l~~l~--~L~~L~Ls~n~~~~ 132 (411)
.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.......+..+. +|++|+|++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 34667777777777666433 44556667777777666633323333333 66666666666543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=5.3e-05 Score=70.39 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCCCccEEEeeCCCCCc--ccchhccCCCCCcEEEccCCCCCccChhhhccC--CCCEEecCCCCCCh---------hHH
Q 045186 47 SLKCLRNLKLSGCSKLK--KFPQIVASMEDLLELYLDGTSITEVPSSIELLH--GLELLNLNNCKNLW---------TTI 113 (411)
Q Consensus 47 ~l~~L~~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~~~---------~~~ 113 (411)
++++|+.|+|++|.... .+|..++.+++|+.|+|++|.|+.+ ..+..+. +|+.|+|++|.-.. ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 57899999999964333 4456667899999999999999876 3455555 89999999998321 123
Q ss_pred Hhhccccceee
Q 045186 114 IYIMAFARSFQ 124 (411)
Q Consensus 114 l~~l~~L~~L~ 124 (411)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 66777777765
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.25 E-value=0.001 Score=65.04 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=33.1
Q ss_pred CCceeEEEEeCCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeC
Q 045186 1 MECLRELLLDGTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSG 58 (411)
Q Consensus 1 l~~L~~L~L~~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~ 58 (411)
+++|+.+.+..+ +..++. .|.++.+|+.+.+..+ +..++ ..+.++..|+.+.+..
T Consensus 161 c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 161 CESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC
Confidence 357888888654 455543 4778888888888652 44433 2344555555555543
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.09 E-value=0.0026 Score=62.08 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=39.9
Q ss_pred ccccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccC
Q 045186 19 VSIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDG 82 (411)
Q Consensus 19 ~si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~ 82 (411)
.+|.++++|+.+.+.+ .+..++ ..+.++.+|+.+++..+ ++.++. .+.++..|+.+.+..
T Consensus 156 ~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 156 EAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCC
Confidence 3488899999999975 344554 34667889999998763 444442 345566666665544
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.69 E-value=0.0029 Score=55.79 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=29.0
Q ss_pred CCCccEEEeeCCCCCc-----ccchhccCCCCCcEEEccCCCCC-----ccChhhhccCCCCEEecCCCC
Q 045186 48 LKCLRNLKLSGCSKLK-----KFPQIVASMEDLLELYLDGTSIT-----EVPSSIELLHGLELLNLNNCK 107 (411)
Q Consensus 48 l~~L~~L~Ls~c~~l~-----~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~ 107 (411)
-+.|+.|+|++++.++ .+-+.+..-+.|+.|+|++|.|. .+...+..-+.|+.|+|++|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3455556665532332 23334444455666666666554 122233334555555555555
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.69 E-value=0.0081 Score=58.01 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=32.6
Q ss_pred cCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCCCCC-hhHHHhhccccceeecCCCCccccccccccc-hhhhcC
Q 045186 70 ASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCKNL-WTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGL 146 (411)
Q Consensus 70 ~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~-~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l 146 (411)
.++..|+.+.+..+ ++.+.. .+..+.+|+.+.+..+-.. ....+..+++|+.+.+.++.++. |+ ..+.+|
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~------I~~~aF~~c 309 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIET------LEPRVFMDC 309 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCE------ECTTTTTTC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccce------ehhhhhcCC
Confidence 33444444444332 332222 2334444555444333211 11224444555555555444444 43 234444
Q ss_pred CCCCEecc
Q 045186 147 LNLKELEL 154 (411)
Q Consensus 147 ~~L~~L~L 154 (411)
.+|+.+.|
T Consensus 310 ~~L~~i~l 317 (379)
T 4h09_A 310 VKLSSVTL 317 (379)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEc
Confidence 55555544
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.56 E-value=0.0031 Score=55.58 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=75.4
Q ss_pred ccCCCCccEEEEecCCCCcc-----cccccCCCCCccEEEeeCCCCC----cccchhccCCCCCcEEEccCCCCC-----
Q 045186 21 IELLSGLVQLSLKGCKNLLS-----LPIAISSLKCLRNLKLSGCSKL----KKFPQIVASMEDLLELYLDGTSIT----- 86 (411)
Q Consensus 21 i~~l~~L~~L~L~~c~~l~~-----lp~~i~~l~~L~~L~Ls~c~~l----~~lp~~l~~l~~L~~L~L~~~~i~----- 86 (411)
+.+-+.|+.|+|++++.++. +-..+..-+.|+.|+|++|..- ..+.+.+..-+.|+.|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 45567899999987645553 4445666789999999996543 234455666688999999999997
Q ss_pred ccChhhhccCCCCEEecCCCCC--Chh-------HHHhhccccceeecCCCCc
Q 045186 87 EVPSSIELLHGLELLNLNNCKN--LWT-------TIIYIMAFARSFQFDGKEF 130 (411)
Q Consensus 87 ~lp~~i~~l~~L~~L~L~~~~~--~~~-------~~l~~l~~L~~L~Ls~n~~ 130 (411)
.+-..+..-+.|+.|+|++|.. .-. ..+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2333455557799999987632 111 2255567788888876643
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.28 E-value=0.014 Score=56.89 Aligned_cols=105 Identities=13% Similarity=0.170 Sum_probs=69.7
Q ss_pred ccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCCCccCh-hhhccCCCCEEecCCCC-CChhHHHhhcccc
Q 045186 44 AISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSITEVPS-SIELLHGLELLNLNNCK-NLWTTIIYIMAFA 120 (411)
Q Consensus 44 ~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~-~~~~~~l~~l~~L 120 (411)
.+..+.+|+.+.+.. + +..+. ..+.++.+|+.+.+. +.++.++. .+..+.+|+.+.|..+- .+....+..+++|
T Consensus 260 aF~~c~~L~~i~lp~-~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-S-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCT-T-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccc-c-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 355677788877765 2 23333 345667788888875 45666654 36677888888886653 2333457788888
Q ss_pred ceeecCCCCccccccccccc-hhhhcCCCCCEecccCcc
Q 045186 121 RSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELEDCK 158 (411)
Q Consensus 121 ~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~c~ 158 (411)
+.+.|..+ ++. |. ..+.+|++|+.+++.++.
T Consensus 337 ~~i~ip~s-v~~------I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTK------IPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCB------CCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCE------EhHhHhhCCCCCCEEEECCce
Confidence 88888654 566 65 467788888888887654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.25 E-value=0.027 Score=54.21 Aligned_cols=125 Identities=11% Similarity=0.134 Sum_probs=77.0
Q ss_pred cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccc-hhccCCCCCcEEEccCCCCCccCh-hhhccC
Q 045186 20 SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFP-QIVASMEDLLELYLDGTSITEVPS-SIELLH 96 (411)
Q Consensus 20 si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~ 96 (411)
.+..+.+|+.+.+.. .+..++ ..+..+..|+.+.+..+ +..+. ..+.++.+|+.+.+.. .++.++. .+..+.
T Consensus 212 ~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCT
T ss_pred ccccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceecccccccccc
Confidence 355667777777654 244433 33456677777777652 45444 3455667777777754 3554443 356677
Q ss_pred CCCEEecCCCC--CChhHHHhhccccceeecCCCCccccccccccc-hhhhcCCCCCEecccC
Q 045186 97 GLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFS-VSISGLLNLKELELED 156 (411)
Q Consensus 97 ~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp-~~l~~l~~L~~L~L~~ 156 (411)
+|+.+.+.++. .+....+..+.+|+.+.|..+ ++. |. ..+.+|++|+.+.+..
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~------I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKT------IQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCE------ECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccE------EHHHHhhCCCCCCEEEECC
Confidence 78877776653 233445777778888877653 555 55 3567778888877753
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.11 E-value=0.014 Score=56.91 Aligned_cols=124 Identities=14% Similarity=0.222 Sum_probs=86.3
Q ss_pred cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeCCCCCcccch-hccCCCCCcEEEccCCCCCccCh-hhhccC
Q 045186 20 SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSGCSKLKKFPQ-IVASMEDLLELYLDGTSITEVPS-SIELLH 96 (411)
Q Consensus 20 si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~c~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~-~i~~l~ 96 (411)
+|.++.+|+.+.+.. .+..+. ..+.++.+|+.+.+.. .+..+++ .+.++.+|+.+.|..+ ++.+.. .+..+.
T Consensus 260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred eeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 477889999999875 233443 4466789999999964 5677764 5678899999999754 666654 577899
Q ss_pred CCCEEecCCCC-CChhHHHhhccccceeecCCCCccccccccccchhhhcCCCCCEecccC
Q 045186 97 GLELLNLNNCK-NLWTTIIYIMAFARSFQFDGKEFISCSFDVVFSVSISGLLNLKELELED 156 (411)
Q Consensus 97 ~L~~L~L~~~~-~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~lp~~l~~l~~L~~L~L~~ 156 (411)
+|+.+.+..+- .+....+.++++|+.+++.++... + ..+..+..|+.+.+..
T Consensus 335 ~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~-------~-~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 335 QLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQ-------W-NAISTDSGLQNLPVAP 387 (394)
T ss_dssp TCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHH-------H-HTCBCCCCC-------
T ss_pred CCCEEEECcccCEEhHhHhhCCCCCCEEEECCceee-------h-hhhhccCCCCEEEeCC
Confidence 99999997654 344566999999999999987432 2 3456677888877754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.42 E-value=0.027 Score=45.91 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=33.7
Q ss_pred EEEeeCCCCCc--ccchhccCCCCCcEEEccCCCCCccChh-hhccCCCCEEecCCCC
Q 045186 53 NLKLSGCSKLK--KFPQIVASMEDLLELYLDGTSITEVPSS-IELLHGLELLNLNNCK 107 (411)
Q Consensus 53 ~L~Ls~c~~l~--~lp~~l~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 107 (411)
.++.++ ..++ .+|..+ -.+|+.|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 556665 4455 666543 24677888888888877754 4556677777766665
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.69 E-value=0.039 Score=44.94 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=30.0
Q ss_pred cEEEccCCCCC--ccChhhhccCCCCEEecCCCC--CChhHHHhhccccceeecCCCCc
Q 045186 76 LELYLDGTSIT--EVPSSIELLHGLELLNLNNCK--NLWTTIIYIMAFARSFQFDGKEF 130 (411)
Q Consensus 76 ~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~--~~~~~~l~~l~~L~~L~Ls~n~~ 130 (411)
..++.++++++ .+|..+. ++|+.|+|++|. .+....+..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36788888888 8886432 356666666555 22233344455555555555543
No 165
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=72.89 E-value=1.1 Score=24.51 Aligned_cols=12 Identities=58% Similarity=0.758 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCC
Q 045186 397 DYDEKPQPKRFR 408 (411)
Q Consensus 397 ~~~~~~~~k~~~ 408 (411)
|++|||+.||-|
T Consensus 15 dedeepprkrkr 26 (28)
T 3ukw_C 15 DEDEEPPRKRKR 26 (28)
T ss_dssp CGGGSCCSSCCC
T ss_pred ccccCcchhhhc
Confidence 467888888865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.25 E-value=75 Score=23.83 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=30.3
Q ss_pred CCCCCcccc-cccCCCCccEEEEecCCCCcccc-cccCCCCCccEEEeeC
Q 045186 11 GTDIKELPV-SIELLSGLVQLSLKGCKNLLSLP-IAISSLKCLRNLKLSG 58 (411)
Q Consensus 11 ~~~l~~lp~-si~~l~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~Ls~ 58 (411)
|..++.|.. .|.++++|+.+.|-. .++.+. ..+.++.+|+.+.+.+
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 345666643 377888888888865 344443 3466777888888766
Done!