Query 045187
Match_columns 265
No_of_seqs 162 out of 365
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 3.8E-66 8.2E-71 436.8 20.6 153 99-260 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.8 6.5E-09 1.4E-13 70.4 3.8 45 4-48 1-45 (47)
3 PF00646 F-box: F-box domain; 98.4 9.1E-08 2E-12 64.5 1.7 44 4-47 3-46 (48)
4 smart00256 FBOX A Receptor for 98.4 4.3E-07 9.2E-12 58.7 3.7 40 7-46 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 95.7 0.012 2.6E-07 46.9 3.5 73 2-80 2-74 (109)
6 KOG2997 F-box protein FBX9 [Ge 94.0 0.024 5.3E-07 53.5 1.4 81 4-87 107-194 (366)
7 PLN03215 ascorbic acid mannose 91.0 0.21 4.5E-06 48.3 3.3 41 1-41 1-42 (373)
8 KOG4408 Putative Mg2+ and Co2+ 86.9 0.18 3.9E-06 48.0 -0.3 50 3-52 7-56 (386)
9 KOG2120 SCF ubiquitin ligase, 85.4 0.73 1.6E-05 43.9 3.0 43 4-46 98-140 (419)
10 KOG3926 F-box proteins [Amino 84.5 0.68 1.5E-05 43.1 2.3 74 4-79 202-278 (332)
11 KOG0274 Cdc4 and related F-box 83.6 0.74 1.6E-05 46.5 2.3 50 4-53 108-157 (537)
12 PF02018 CBM_4_9: Carbohydrate 79.6 26 0.00056 26.9 10.9 69 153-239 57-125 (131)
13 PF13013 F-box-like_2: F-box-l 64.5 6.4 0.00014 31.6 2.7 41 3-45 21-61 (109)
14 KOG0281 Beta-TrCP (transducin 49.6 12 0.00025 36.4 2.1 42 4-45 75-120 (499)
15 KOG4114 Cytochrome c oxidase a 32.1 26 0.00056 26.1 1.2 17 4-20 38-54 (73)
16 PF03489 SapB_2: Saposin-like 20.7 1.3E+02 0.0029 18.3 2.8 22 9-30 13-34 (35)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=3.8e-66 Score=436.84 Aligned_cols=153 Identities=46% Similarity=0.860 Sum_probs=145.3
Q ss_pred CCeeEEeeccceeeeeCCCCCceeEeecCCCCcccceeEeeeeEEEEEEEEeccccCCCCeEEEEEEEEeCcccCCCCcc
Q 045187 99 GKKCYMVGARDLCIGWGSTPSCWKWTSLPESRFPEVAELVYFWFFEVYARIETRILSHRTNYAAYLVFKFGKSTDGFRST 178 (265)
Q Consensus 99 G~kCymLsAR~L~ItWgdd~~YW~W~~~~~Srf~eVAeL~~VcWLeI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~ 178 (265)
|+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~ 80 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP 80 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEEEEcCceee-eeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCCCcEEEEEEEEEeCCcccceEEEEEEEE
Q 045187 179 QLTSAVYVEGINDK-KRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGGTLLCSLFDFDRFGTRHGLVIQGIEF 257 (265)
Q Consensus 179 pv~~~v~~~~g~~~-~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~~~~ev~fsl~e~~~~~wK~GLiv~GIeI 257 (265)
||+++|++++++.. +.+.+++ |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+||||
T Consensus 81 pv~~~v~~~~~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieI 151 (154)
T PF14299_consen 81 PVEFSVKVPDGEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEI 151 (154)
T ss_pred CEEEEEEeCCCccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEE
Confidence 99999999987652 4456666 6689999999999999999888999999999999999999999999999
Q ss_pred Eec
Q 045187 258 RPK 260 (265)
Q Consensus 258 RPk 260 (265)
|||
T Consensus 152 RPK 154 (154)
T PF14299_consen 152 RPK 154 (154)
T ss_pred ecC
Confidence 998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.78 E-value=6.5e-09 Score=70.43 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=40.3
Q ss_pred cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccC
Q 045187 4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFL 48 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~fl 48 (265)
+++||+|++.+|+++++|.|.+++++||+.|+.++.++.+|.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~ 45 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC 45 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence 468999999999999999999999999999999999999998764
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.43 E-value=9.1e-08 Score=64.55 Aligned_cols=44 Identities=36% Similarity=0.619 Sum_probs=38.9
Q ss_pred cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhccc
Q 045187 4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKF 47 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~f 47 (265)
+.+||++++.+|++++++.|.++++.||+.|+.+++++.+|.++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56899999999999999999999999999999999999999865
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.37 E-value=4.3e-07 Score=58.66 Aligned_cols=40 Identities=40% Similarity=0.556 Sum_probs=38.6
Q ss_pred CcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcc
Q 045187 7 LPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEK 46 (265)
Q Consensus 7 Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~ 46 (265)
||++++..|+++++|.|.+++++||+.|+.+++++.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=95.65 E-value=0.012 Score=46.90 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=58.8
Q ss_pred CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccccccccccCCcccccCCCCHHHHHHhhcC
Q 045187 2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCH 80 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~~~~~~~~~~~~skKely~~Lc~ 80 (265)
..++++|.++|.-||...+|....++..-|+.+ +-++|.+|.+|+-.||..-.....+ . +..+-+++|..+.+
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~-~---~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKP-K---EPESWRELYEKLKK 74 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccc-c---ccchHHHHHHHHHH
Confidence 568899999999999999999999999998765 5679999999999999852222211 1 34689999998764
No 6
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.01 E-value=0.024 Score=53.48 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=57.7
Q ss_pred cCCCcHHHHHHHHhcCC-----hHHHHHHhhccHHHHhhhcchhhhcccCCccccccccccCCcc--cccCCCCHHHHHH
Q 045187 4 TNVLPAECISHIISLTT-----PRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSS--FLITSLSKKDLYF 76 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~-----P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~~~~~~--~~~~~~skKely~ 76 (265)
+..||++.+..|+...= -++.-++|+||+.|+-+|..|.+|..+|=.-|..-+-...+-. +. -..|-+++|.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sk-y~~SWR~Mfl 185 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSK-YYTSWREMFL 185 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhH-HHhHHHHHHh
Confidence 57899999999987654 4999999999999999999999999988766653332222110 01 2357788887
Q ss_pred hhcCCCeeecC
Q 045187 77 HLCHHPIFINN 87 (265)
Q Consensus 77 ~Lc~~pvlld~ 87 (265)
.-- -|.+||
T Consensus 186 ~Rp--RvrFdG 194 (366)
T KOG2997|consen 186 ERP--RVRFDG 194 (366)
T ss_pred hCc--ceeecc
Confidence 532 355555
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=90.95 E-value=0.21 Score=48.30 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=36.6
Q ss_pred CCccCCCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhhhcch
Q 045187 1 MDITNVLPAECISHIISLT-TPRDACRLAVVSPAFKSAADSV 41 (265)
Q Consensus 1 ~~~~~~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~aa~sD 41 (265)
|..-.+||+|.+..|...+ +..|..|+++||+++|+|+...
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 4556789999999999998 7999999999999999998863
No 8
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=86.87 E-value=0.18 Score=48.03 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=45.9
Q ss_pred ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccc
Q 045187 3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDY 52 (265)
Q Consensus 3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy 52 (265)
.++.+|.+.+..+++++.++++.+.|+||+.++..++-+.+|++++-.++
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 46789999999999999999999999999999999999999999985443
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.45 E-value=0.73 Score=43.88 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=40.9
Q ss_pred cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcc
Q 045187 4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEK 46 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~ 46 (265)
++.||++.+..|.+.+--.|.-+++.||+.|...|....+|..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 5789999999999999999999999999999999999999954
No 10
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=84.54 E-value=0.68 Score=43.11 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=53.7
Q ss_pred cCCCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhhhcchhhhcccCCccccc--cccccCCcccccCCCCHHHHHHhhc
Q 045187 4 TNVLPAECISHIISLTT-PRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKL--IISNSVSSSFLITSLSKKDLYFHLC 79 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~-P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~--il~~~~~~~~~~~~~skKely~~Lc 79 (265)
|-|||++|+..||..++ -+|.--+|.|-.++....+.+.+|.+.+--.|.+ |-....... . ...--|++|+.|-
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k-~-~q~dWkqmyf~L~ 278 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSK-K-GQKDWKQMYFQLR 278 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcc-c-cchhHHHHHHHHH
Confidence 66999999999998865 8999999999999999999999999887755441 222111000 0 1123578888774
No 11
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=83.56 E-value=0.74 Score=46.53 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=44.6
Q ss_pred cCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCcccc
Q 045187 4 TNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYK 53 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~ 53 (265)
+..||-+..-.|+++++|++.+.+++||+.|+..++.|.+|.+.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~ 157 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG 157 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence 56799999999999999999999999999999999999999876665443
No 12
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=79.59 E-value=26 Score=26.91 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=44.1
Q ss_pred ccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCCCc
Q 045187 153 ILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGDGG 232 (265)
Q Consensus 153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~~~~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~~~~ 232 (265)
.|.||.+|.+.+-+|.... .++.+.+...++.. ......- ...-.+.|.++++ +|... .+..
T Consensus 57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~W~~~s~-~ft~~-~~~~ 118 (131)
T PF02018_consen 57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDEDGSP-YNWYTGQ---------TVTITGEWTKYSG-TFTAP-SDDD 118 (131)
T ss_dssp EE-TTSEEEEEEEEEESSS------EEEEEEEEESSTTT-EEEEEEE---------EEEETSSEEEEEE-EEEEE-SSCE
T ss_pred EecCCCEEEEEEEEEeCCC------CEEEEEEEEcCCCC-cEEEEEE---------EEECCCCcEEEEE-EEEEC-CCCc
Confidence 4569999999999999884 67777777766521 0111000 0122489999994 89887 4455
Q ss_pred EEEEEEE
Q 045187 233 TLLCSLF 239 (265)
Q Consensus 233 ev~fsl~ 239 (265)
.+.|.+.
T Consensus 119 ~~~l~~~ 125 (131)
T PF02018_consen 119 TVRLYFE 125 (131)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 6666543
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=64.49 E-value=6.4 Score=31.62 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=35.5
Q ss_pred ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhc
Q 045187 3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWE 45 (265)
Q Consensus 3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~ 45 (265)
.+.|||+|.+..|...-.+.+...+...++++|.+.+. .|.
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~--~~~ 61 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH--IWY 61 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHH
Confidence 36789999999999999999999999999999887544 553
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=49.58 E-value=12 Score=36.40 Aligned_cols=42 Identities=19% Similarity=0.426 Sum_probs=36.2
Q ss_pred cCCCc----HHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhc
Q 045187 4 TNVLP----AECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWE 45 (265)
Q Consensus 4 ~~~Lp----e~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~ 45 (265)
++.|| +.....||+++...+.|..-.||+.++.+-+.--+|.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 35689 8888999999999999999999999998877666663
No 15
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=32.10 E-value=26 Score=26.08 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.5
Q ss_pred cCCCcHHHHHHHHhcCC
Q 045187 4 TNVLPAECISHIISLTT 20 (265)
Q Consensus 4 ~~~Lpe~ci~~il~~~~ 20 (265)
+.+|||+|++.+=.|+.
T Consensus 38 ~~~vPeeC~al~~af~d 54 (73)
T KOG4114|consen 38 LKDVPEECIALMKAFLD 54 (73)
T ss_pred cccCcHHHHHHHHHHHH
Confidence 35799999999988875
No 16
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=20.72 E-value=1.3e+02 Score=18.32 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCChHHHHHHhhc
Q 045187 9 AECISHIISLTTPRDACRLAVV 30 (265)
Q Consensus 9 e~ci~~il~~~~P~d~~r~a~v 30 (265)
+..+..+.+..+|.++|..-.+
T Consensus 13 ~~ii~~l~~~~~p~~iC~~i~~ 34 (35)
T PF03489_consen 13 PQIIQLLEKQLDPQQICTKIGL 34 (35)
T ss_dssp HHHHHHHHTTSTHHHHHHHTTS
T ss_pred HHHHHHHHhcCChHHHHHHcCC
Confidence 4567788899999999986543
Done!