Query 045187
Match_columns 265
No_of_seqs 162 out of 365
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.3E-09 1.1E-13 72.4 4.5 45 3-47 8-52 (53)
2 3l2o_B F-box only protein 4; s 98.7 5.3E-09 1.8E-13 96.2 4.4 82 2-85 3-97 (312)
3 2e31_A FBS1, F-box only protei 98.1 1.4E-06 4.9E-11 79.8 4.5 80 2-87 49-130 (297)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.9 4.4E-06 1.5E-10 76.7 3.9 48 2-49 17-64 (445)
5 3v7d_B Cell division control p 97.6 1.5E-05 5.1E-10 73.1 2.1 46 3-48 14-60 (464)
6 1p22_A F-BOX/WD-repeat protein 97.6 1.2E-05 4.2E-10 73.8 1.5 49 3-51 10-62 (435)
7 2ast_B S-phase kinase-associat 97.0 0.00045 1.5E-08 61.2 4.2 46 2-47 7-52 (336)
8 2p1m_B Transport inhibitor res 95.4 0.009 3.1E-07 56.8 3.7 36 2-37 4-40 (594)
9 3ogk_B Coronatine-insensitive 93.8 0.032 1.1E-06 53.0 3.2 33 6-38 15-48 (592)
10 1dyo_A Endo-1,4-beta-xylanase 93.7 1.6 5.3E-05 35.5 13.1 96 152-264 63-160 (160)
11 4hfx_A Transcription elongatio 91.0 0.096 3.3E-06 40.2 2.0 65 6-80 12-76 (97)
12 2w5f_A Endo-1,4-beta-xylanase 64.7 56 0.0019 31.4 11.5 94 151-261 77-170 (540)
13 3tes_A Tencon; fibronectin typ 25.7 88 0.003 22.0 4.4 36 149-188 57-92 (98)
14 1gui_A Laminarinase 16A; carbo 25.4 2.3E+02 0.0078 21.7 13.2 86 152-260 67-155 (155)
15 3qht_C Monobody YSMB-1; fibron 24.5 50 0.0017 23.1 2.8 35 149-183 60-94 (97)
16 3b83_A Ten-D3; beta sheet, com 23.4 1.2E+02 0.0041 21.2 4.7 37 149-189 57-93 (100)
17 1x5a_A Ephrin type-A receptor 21.5 1.2E+02 0.0042 21.6 4.5 22 149-170 64-85 (107)
18 2qbw_A PDZ-fibronectin fusion 20.5 1.1E+02 0.0039 24.3 4.5 34 150-184 160-193 (195)
19 2lde_A Sarafotoxin-I3; endothe 20.3 19 0.00066 20.8 -0.2 10 110-119 17-26 (26)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.82 E-value=3.3e-09 Score=72.41 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=40.2
Q ss_pred ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhccc
Q 045187 3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKF 47 (265)
Q Consensus 3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~f 47 (265)
.+++||++++.+|+++++|+|.+++++||+.|+.++.++.+|+.+
T Consensus 8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 578999999999999999999999999999999999999999864
No 2
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.73 E-value=5.3e-09 Score=96.15 Aligned_cols=82 Identities=21% Similarity=0.344 Sum_probs=64.4
Q ss_pred CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCcccc---ccccccCCccc----------ccCC
Q 045187 2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYK---LIISNSVSSSF----------LITS 68 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~---~il~~~~~~~~----------~~~~ 68 (265)
|.|++||.+++.+|++|++|+|+|++++||+.||.+|+.+.+|+.||-.|++ +|-..+.|... ...+
T Consensus 3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~ 82 (312)
T 3l2o_B 3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF 82 (312)
T ss_dssp CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence 5789999999999999999999999999999999999999999999987744 44443332210 0014
Q ss_pred CCHHHHHHhhcCCCeee
Q 045187 69 LSKKDLYFHLCHHPIFI 85 (265)
Q Consensus 69 ~skKely~~Lc~~pvll 85 (265)
..++.+|.+=| |.|+
T Consensus 83 ~~~~~~y~~~~--p~l~ 97 (312)
T 3l2o_B 83 FDYMAVYRMCC--PYLI 97 (312)
T ss_dssp CCHHHHHHHHC--TTCC
T ss_pred ccHHHHHHhcC--hhhh
Confidence 56899999988 5443
No 3
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.13 E-value=1.4e-06 Score=79.83 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=61.1
Q ss_pred CccCCCcHHHHHHHHhcCChHHHH-HHhhccHHHHhhhcchhhhcccCCccccccccc-cCCcccccCCCCHHHHHHhhc
Q 045187 2 DITNVLPAECISHIISLTTPRDAC-RLAVVSPAFKSAADSVLVWEKFLPSDYKLIISN-SVSSSFLITSLSKKDLYFHLC 79 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~-r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~-~~~~~~~~~~~skKely~~Lc 79 (265)
..+..||++.+..||+++.|++.+ |+++|||.||..++++.+|.+.|... .+... ...+ +..+-|.+|..--
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~~~----~~~~Wk~~y~~~~ 122 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSADE----ERDHWQQFYFLSK 122 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC---------CCSCHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--CcccccccCC----CCCChhhhhehee
Confidence 467899999999999999999999 99999999999999999999988765 12211 1111 2356899998743
Q ss_pred CCCeeecC
Q 045187 80 HHPIFINN 87 (265)
Q Consensus 80 ~~pvlld~ 87 (265)
..-+||.|
T Consensus 123 ~gRNLL~N 130 (297)
T 2e31_A 123 RRRNLLRN 130 (297)
T ss_dssp HCCCCSSC
T ss_pred cccceeec
Confidence 34566655
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.94 E-value=4.4e-06 Score=76.71 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=45.0
Q ss_pred CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCC
Q 045187 2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLP 49 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP 49 (265)
..++.||++++.+|+++++|+|.|++++||+.|+.+++++.+|++++-
T Consensus 17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~ 64 (445)
T 2ovr_B 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK 64 (445)
T ss_dssp STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence 457899999999999999999999999999999999999999998764
No 5
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.64 E-value=1.5e-05 Score=73.08 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=42.8
Q ss_pred ccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcc-hhhhcccC
Q 045187 3 ITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADS-VLVWEKFL 48 (265)
Q Consensus 3 ~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~s-D~vW~~fl 48 (265)
-+..||++++.+|+++++|+|.|++++||+.|+.++++ +.+|.+++
T Consensus 14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~ 60 (464)
T 3v7d_B 14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL 60 (464)
T ss_dssp HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35679999999999999999999999999999999987 99999876
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.63 E-value=1.2e-05 Score=73.75 Aligned_cols=49 Identities=18% Similarity=0.432 Sum_probs=45.0
Q ss_pred ccCCCcHH----HHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCcc
Q 045187 3 ITNVLPAE----CISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSD 51 (265)
Q Consensus 3 ~~~~Lpe~----ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~d 51 (265)
-+..||++ ++.+|+++++|+|.|++++||+.|+.+++++.+|.+++...
T Consensus 10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~ 62 (435)
T 1p22_A 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM 62 (435)
T ss_dssp HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence 35679999 99999999999999999999999999999999999887654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.01 E-value=0.00045 Score=61.24 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=41.4
Q ss_pred CccCCCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhccc
Q 045187 2 DITNVLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKF 47 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~f 47 (265)
..+++||++++.+|+++++++|.++++.||+.|+.++.+...|..+
T Consensus 7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 3578999999999999999999999999999999998777778653
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.38 E-value=0.009 Score=56.81 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=29.4
Q ss_pred CccCCCcHHHHHHHHhcCC-hHHHHHHhhccHHHHhh
Q 045187 2 DITNVLPAECISHIISLTT-PRDACRLAVVSPAFKSA 37 (265)
Q Consensus 2 ~~~~~Lpe~ci~~il~~~~-P~d~~r~a~vs~~fr~a 37 (265)
..+++||++++.+|+++++ ++|++++|+||+.|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4678999999999999999 99999999999999988
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.80 E-value=0.032 Score=53.02 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHhcC-ChHHHHHHhhccHHHHhhh
Q 045187 6 VLPAECISHIISLT-TPRDACRLAVVSPAFKSAA 38 (265)
Q Consensus 6 ~Lpe~ci~~il~~~-~P~d~~r~a~vs~~fr~aa 38 (265)
+||++++.+|++++ +++|+++++.||+.|+.+.
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 79999999999999 8999999999999999873
No 10
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=93.74 E-value=1.6 Score=35.48 Aligned_cols=96 Identities=9% Similarity=0.029 Sum_probs=59.2
Q ss_pred cccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEc--CceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCC
Q 045187 152 RILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVE--GINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNG 229 (265)
Q Consensus 152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~--~g~~~~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~ 229 (265)
..|.||++|.+..-+|+.+.. ....+.+++... +|.. +...+.. -....++|.+++-|.|.....
T Consensus 63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~---~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~ 129 (160)
T 1dyo_A 63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQ---RYDTIDM-------KTVGPNQWVHLYNPQYRIPSD 129 (160)
T ss_dssp TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCE---EEEEEEE-------EEECSSCCEEEEEEEEECCTT
T ss_pred hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCE---EEEEEee-------EEEcCCccEEEECcEEEeCCC
Confidence 478999999999999997742 223444455442 2332 1122211 012358999999889998654
Q ss_pred CCcEEEEEEEEEeCCcccceEEEEEEEEEecCCCC
Q 045187 230 DGGTLLCSLFDFDRFGTRHGLVIQGIEFRPKKMPM 264 (265)
Q Consensus 230 ~~~ev~fsl~e~~~~~wK~GLiv~GIeIRPk~~~~ 264 (265)
. ..+.+- .| +..-..=+.|+.|.|.|....|
T Consensus 130 ~-~~~~ly-ve--~~~~~~d~yiDdv~i~~~g~~~ 160 (160)
T 1dyo_A 130 A-TDMYVY-VE--TADDTINFYIDEAIGAVAGTVI 160 (160)
T ss_dssp C-EEEEEE-EE--ESSCCCCEEEEEEEEEETTCCC
T ss_pred C-CEEEEE-EE--CCCCCccEEEEEEEEEeCcccC
Confidence 2 234332 23 2334556899999999987654
No 11
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=91.00 E-value=0.096 Score=40.21 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHhcCChHHHHHHhhccHHHHhhhcchhhhcccCCccccccccccCCcccccCCCCHHHHHHhhcC
Q 045187 6 VLPAECISHIISLTTPRDACRLAVVSPAFKSAADSVLVWEKFLPSDYKLIISNSVSSSFLITSLSKKDLYFHLCH 80 (265)
Q Consensus 6 ~Lpe~ci~~il~~~~P~d~~r~a~vs~~fr~aa~sD~vW~~flP~dy~~il~~~~~~~~~~~~~skKely~~Lc~ 80 (265)
..|-+.+.-||...+|....++-.-|..+ .-++|-+|.+++-.||..-- +. ...|-+++|.+|.+
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~---e~esWRelY~rl~~ 76 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE---EYESWREMYLRLQD 76 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC---SSSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC---CCCCHHHHHHHHHH
Confidence 36888899999999999999999999965 67899999999999998332 11 45799999999975
No 12
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=64.75 E-value=56 Score=31.45 Aligned_cols=94 Identities=12% Similarity=0.156 Sum_probs=53.6
Q ss_pred ccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCceeeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCCC
Q 045187 151 TRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGINDKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNGD 230 (265)
Q Consensus 151 ~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~~~~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~~ 230 (265)
+..|.||++|....-+|. + |=...++.+++...++........++.. -....++|.+++ |.|.....
T Consensus 77 ~~~l~~G~~Y~fSawVk~-~---g~~~~~v~l~l~~~d~~~~~~~~~~i~~-------~~~~~g~Wt~L~-g~ft~p~~- 143 (540)
T 2w5f_A 77 GFYLDGGVEYKYSVFVKH-N---GTGTETFKLSVSYLDSETEEENKEVIAT-------KDVVAGEWTEIS-AKYKAPKT- 143 (540)
T ss_dssp TTTCCTTCEEEEEEEEEC-C---SSSEEEEEEEEEEEETTTCCEEEEEEEE-------EEEETTCCEEEE-EEEECCTT-
T ss_pred cceecCCCEEEEEEEEEe-C---CCCCceEEEEEEEecCCCCCceEEEeeE-------EEEeCCeeEEEE-eEEEecCC-
Confidence 457899999999999984 2 2122455555554221100111111110 112368999999 79987543
Q ss_pred CcEEEEEEEEEeCCcccceEEEEEEEEEecC
Q 045187 231 GGTLLCSLFDFDRFGTRHGLVIQGIEFRPKK 261 (265)
Q Consensus 231 ~~ev~fsl~e~~~~~wK~GLiv~GIeIRPk~ 261 (265)
...+++-+ |.. -..-+.|+.|.|.++.
T Consensus 144 ~~~~~lyv-e~~---~~~~f~vDdvsl~~~~ 170 (540)
T 2w5f_A 144 AVNITLSI-TTD---STVDFIFDDVTITRKG 170 (540)
T ss_dssp EEEEEEEE-EES---SCCCEEEEEEEEEEC-
T ss_pred CeEEEEEE-EcC---CCCCEEEEEEEEecCc
Confidence 23455433 332 3457999999997654
No 13
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=25.73 E-value=88 Score=22.05 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=25.1
Q ss_pred EeccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcC
Q 045187 149 IETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEG 188 (265)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~ 188 (265)
+...-|.|+|.|.+.+.-.-.. |- ..|+...+..+|
T Consensus 57 ~~l~gL~P~t~Y~~~V~A~~~~---g~-S~p~~~~~~~~~ 92 (98)
T 3tes_A 57 YDLTGLKPGTEYTVSIYGVKGG---HR-SNPLSAEFTTGG 92 (98)
T ss_dssp EEECSCCTTCEEEEEEEEEETT---EE-BCCEEEEEECSS
T ss_pred EEECCCCCCCEEEEEEEEEeCC---cc-cCCEEEEEEcCc
Confidence 4445689999999877554432 43 488888888755
No 14
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14
Probab=25.37 E-value=2.3e+02 Score=21.67 Aligned_cols=86 Identities=9% Similarity=0.108 Sum_probs=48.8
Q ss_pred cccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCce--eeeeEEEEcCCCCCCCCcccccCCCeEEEEeeeEEecCC
Q 045187 152 RILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGIN--DKKRQGLFLDPSRNTPKLFHDRRDGWMEIEMGEFFNKNG 229 (265)
Q Consensus 152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g~--~~~~~~v~l~~~~~~~~~p~~r~dgW~EielGeF~~~~~ 229 (265)
-.|.+|.+|.+.|.++-... .++.+.+.-.++. ......+.+ ...|-+++. +|.....
T Consensus 67 i~l~~G~~Y~lsf~aka~~~------~~i~v~l~~~~~~~~~~~~~~~~l-------------t~~w~~~~~-~ft~~~~ 126 (155)
T 1gui_A 67 IGLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTVNL-------------TADWQTFTF-TYTHPDD 126 (155)
T ss_dssp EECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEEEE-------------CSSCEEEEE-EEECCTT
T ss_pred EEeCCCCEEEEEEEEEeCCC------CcEEEEEEcCCCChHHheeccEee-------------CCCCEEEEE-EEEcCCC
Confidence 35789999999998887641 3444444322111 101122222 347999986 7776553
Q ss_pred CCcEEEEEEEEEeCCccc-ceEEEEEEEEEec
Q 045187 230 DGGTLLCSLFDFDRFGTR-HGLVIQGIEFRPK 260 (265)
Q Consensus 230 ~~~ev~fsl~e~~~~~wK-~GLiv~GIeIRPk 260 (265)
.+....+.+. . |... +.+.|+-|.+.|.
T Consensus 127 t~~~~~l~f~-~--g~~~~~~v~iD~VsL~P~ 155 (155)
T 1gui_A 127 ADEVVQISFE-L--GEGTATTIYFDDVTVSPQ 155 (155)
T ss_dssp SCSEEEEEEE-C--CSSCCCEEEEEEEEEEEC
T ss_pred CCceEEEEEE-C--CCCCCceEEEEEEEEEeC
Confidence 2333333322 2 3232 6799999999984
No 15
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=24.47 E-value=50 Score=23.14 Aligned_cols=35 Identities=9% Similarity=-0.024 Sum_probs=20.2
Q ss_pred EeccccCCCCeEEEEEEEEeCcccCCCCccceEEE
Q 045187 149 IETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSA 183 (265)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~ 183 (265)
+.-.-|.|+|.|.+.+.-.-..+..-....|+.+.
T Consensus 60 ~~l~~L~p~t~Y~v~V~A~~~~G~gp~ss~p~~~~ 94 (97)
T 3qht_C 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSIN 94 (97)
T ss_dssp EEECSCCTTCEEEEEEEEEEEETTEEEECSCEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCccCCCCCCCEEEe
Confidence 44456999999988766544432111223565543
No 16
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=23.42 E-value=1.2e+02 Score=21.24 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=24.7
Q ss_pred EeccccCCCCeEEEEEEEEeCcccCCCCccceEEEEEEcCc
Q 045187 149 IETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAVYVEGI 189 (265)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~g 189 (265)
+...-|.|+|.|.+.+.-.-. .|.. .|+..+..+.-+
T Consensus 57 ~~i~~L~p~t~Y~~~V~A~n~---~g~s-~p~~~~~~~~~~ 93 (100)
T 3b83_A 57 LTLTNLEPNTTYEIRIVARNG---QQYS-PPVSTTFTTGSL 93 (100)
T ss_dssp EEECSCCTTCEEEEEEEEEET---TEEC-CCEEEEEECCCC
T ss_pred EEECCCCCCCEEEEEEEEEeC---CCCC-CCEEEEEEEEee
Confidence 344569999999987765433 3665 777777666533
No 17
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=21.48 E-value=1.2e+02 Score=21.58 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=16.5
Q ss_pred EeccccCCCCeEEEEEEEEeCc
Q 045187 149 IETRILSHRTNYAAYLVFKFGK 170 (265)
Q Consensus 149 i~~~~LSp~t~Y~ay~v~kl~~ 170 (265)
+...-|.|+|.|.+.+.-+-..
T Consensus 64 ~~i~~L~p~t~Y~f~V~A~~~~ 85 (107)
T 1x5a_A 64 VLLTKLQPDTTYIVRVRTLTPL 85 (107)
T ss_dssp EEEESCCSSCEEEEEEEEECSS
T ss_pred EEECCCCCCCEEEEEEEEECCC
Confidence 5556799999999877666554
No 18
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=20.48 E-value=1.1e+02 Score=24.26 Aligned_cols=34 Identities=6% Similarity=-0.040 Sum_probs=20.8
Q ss_pred eccccCCCCeEEEEEEEEeCcccCCCCccceEEEE
Q 045187 150 ETRILSHRTNYAAYLVFKFGKSTDGFRSTQLTSAV 184 (265)
Q Consensus 150 ~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v 184 (265)
.-.-|.|+|.|.+.+.-.-.. -.|=.+.|+.++.
T Consensus 160 ~l~gL~p~t~Y~~~V~A~~~~-G~g~~S~~v~~~~ 193 (195)
T 2qbw_A 160 TISGLKPGVDYTITVYAYSDY-YGSHHYSPISINY 193 (195)
T ss_dssp EECSCCTTCEEEEEEEEESST-TSSCBCCCEEEEE
T ss_pred EeCCCCCCCEEEEEEEEEeCC-ccCCCCCCEEEEe
Confidence 335689999999866554443 2333346666654
No 19
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=20.34 E-value=19 Score=20.77 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=6.1
Q ss_pred eeeeeCCCCC
Q 045187 110 LCIGWGSTPS 119 (265)
Q Consensus 110 L~ItWgdd~~ 119 (265)
|.|+|.++|+
T Consensus 17 lDiIWvntp~ 26 (26)
T 2lde_A 17 KDVIWVNRNX 26 (26)
T ss_dssp TTCSTTTCC-
T ss_pred ccEEEecCCC
Confidence 5677777663
Done!