Query 045189
Match_columns 299
No_of_seqs 159 out of 1002
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 10:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 5.9E-59 1.3E-63 420.5 27.3 230 20-253 1-235 (236)
2 PF00139 Lectin_legB: Legume l 100.0 2E-57 4.2E-62 410.5 24.7 225 19-251 1-236 (236)
3 cd01951 lectin_L-type legume l 100.0 6E-44 1.3E-48 319.5 24.7 199 31-252 13-223 (223)
4 cd07308 lectin_leg-like legume 99.9 1E-25 2.2E-30 201.3 23.3 187 31-251 19-216 (218)
5 cd06901 lectin_VIP36_VIPL VIP3 99.9 3.9E-21 8.4E-26 174.8 23.2 195 31-256 19-226 (248)
6 cd06902 lectin_ERGIC-53_ERGL E 99.9 9.8E-21 2.1E-25 169.9 23.2 192 31-252 21-223 (225)
7 PF03388 Lectin_leg-like: Legu 99.8 2.8E-17 6.1E-22 148.1 23.2 191 32-250 22-225 (229)
8 cd06903 lectin_EMP46_EMP47 EMP 99.8 4E-17 8.7E-22 145.5 22.1 182 31-252 20-213 (215)
9 KOG3839 Lectin VIP36, involved 99.6 1.7E-14 3.7E-19 133.0 17.4 191 31-250 71-272 (351)
10 KOG3838 Mannose lectin ERGIC-5 99.6 1.8E-13 4E-18 128.2 19.9 187 34-251 56-253 (497)
11 cd06900 lectin_VcfQ VcfQ bacte 99.2 1.9E-09 4E-14 96.5 17.9 196 43-250 30-253 (255)
12 PF08693 SKG6: Transmembrane a 95.6 0.016 3.5E-07 37.8 3.4 29 267-296 11-39 (40)
13 PF15065 NCU-G1: Lysosomal tra 94.6 0.048 1E-06 52.3 4.9 68 226-296 279-348 (350)
14 PF04478 Mid2: Mid2 like cell 92.5 0.16 3.6E-06 42.8 4.0 11 267-277 48-58 (154)
15 PTZ00382 Variant-specific surf 88.8 0.29 6.2E-06 38.3 2.0 17 265-281 63-79 (96)
16 PF06697 DUF1191: Protein of u 86.1 4.6 9.9E-05 37.6 8.5 30 80-109 62-92 (278)
17 KOG3514 Neurexin III-alpha [Si 85.7 6.3 0.00014 42.9 10.1 152 31-231 803-963 (1591)
18 PF15102 TMEM154: TMEM154 prot 85.4 1.3 2.7E-05 37.3 4.1 7 268-274 58-64 (146)
19 PHA03265 envelope glycoprotein 77.7 1.1 2.4E-05 42.7 1.2 30 264-296 347-376 (402)
20 PF01102 Glycophorin_A: Glycop 75.1 0.39 8.4E-06 39.2 -2.2 14 285-298 82-95 (122)
21 PF12191 stn_TNFRSF12A: Tumour 74.8 0.96 2.1E-05 36.9 0.0 33 266-298 76-108 (129)
22 cd00110 LamG Laminin G domain; 72.7 47 0.001 26.5 14.6 25 176-202 76-100 (151)
23 PF12877 DUF3827: Domain of un 70.8 3.4 7.4E-05 42.5 2.8 33 264-296 266-298 (684)
24 PF14610 DUF4448: Protein of u 70.3 3.3 7.1E-05 36.1 2.3 13 268-280 159-171 (189)
25 smart00282 LamG Laminin G doma 65.7 65 0.0014 25.4 10.4 26 175-202 57-82 (135)
26 PF13908 Shisa: Wnt and FGF in 64.6 6.6 0.00014 33.8 3.1 16 266-281 77-92 (179)
27 PF04689 S1FA: DNA binding pro 64.6 1.7 3.6E-05 31.3 -0.6 28 265-292 10-38 (69)
28 PF01034 Syndecan: Syndecan do 62.4 2.6 5.5E-05 30.4 0.0 11 285-295 27-37 (64)
29 PF01299 Lamp: Lysosome-associ 61.8 4.7 0.0001 37.8 1.7 30 268-297 270-300 (306)
30 PF05454 DAG1: Dystroglycan (D 61.7 2.6 5.7E-05 39.4 0.0 11 149-161 33-43 (290)
31 PF12768 Rax2: Cortical protei 54.9 6.9 0.00015 36.5 1.5 29 267-295 228-258 (281)
32 PF06365 CD34_antigen: CD34/Po 53.4 7.6 0.00017 34.5 1.5 26 269-294 101-127 (202)
33 PF02480 Herpes_gE: Alphaherpe 53.4 4.4 9.6E-05 40.2 0.0 11 99-109 145-155 (439)
34 PF06024 DUF912: Nucleopolyhed 52.3 9.1 0.0002 30.0 1.6 7 289-295 84-90 (101)
35 PF03302 VSP: Giardia variant- 51.8 8.9 0.00019 37.5 1.8 20 264-283 363-382 (397)
36 KOG1094 Discoidin domain recep 44.1 67 0.0014 33.4 6.6 29 266-294 389-417 (807)
37 smart00159 PTX Pentraxin / C-r 41.9 63 0.0014 28.3 5.5 29 175-203 85-113 (206)
38 PF12248 Methyltransf_FA: Farn 39.5 1.6E+02 0.0034 22.7 6.9 46 177-233 49-94 (102)
39 PF05337 CSF-1: Macrophage col 37.8 11 0.00023 35.0 0.0 25 267-291 224-248 (285)
40 PHA03099 epidermal growth fact 37.3 29 0.00062 28.6 2.4 14 236-249 76-89 (139)
41 PF14991 MLANA: Protein melan- 36.9 11 0.00023 30.3 -0.1 23 271-293 27-49 (118)
42 PF01034 Syndecan: Syndecan do 36.3 11 0.00023 27.3 -0.3 27 268-294 13-39 (64)
43 PLN03150 hypothetical protein; 35.1 24 0.00052 36.5 2.0 13 268-280 544-556 (623)
44 PF15345 TMEM51: Transmembrane 35.0 18 0.00038 32.8 0.9 27 266-292 55-81 (233)
45 PF15099 PIRT: Phosphoinositid 33.3 18 0.0004 29.6 0.7 7 232-238 37-43 (129)
46 PTZ00046 rifin; Provisional 33.2 15 0.00033 35.4 0.2 9 98-107 144-152 (358)
47 COG4736 CcoQ Cbb3-type cytochr 31.3 18 0.0004 25.7 0.3 14 285-298 24-37 (60)
48 PF05808 Podoplanin: Podoplani 31.3 16 0.00035 31.2 0.0 32 264-295 125-156 (162)
49 TIGR03503 conserved hypothetic 29.6 38 0.00083 32.9 2.3 14 283-296 360-373 (374)
50 PF11857 DUF3377: Domain of un 27.8 50 0.0011 24.5 2.1 19 270-288 31-49 (74)
51 PF14283 DUF4366: Domain of un 26.5 65 0.0014 28.9 3.1 24 176-201 79-102 (218)
52 PF00558 Vpu: Vpu protein; In 26.1 30 0.00066 26.2 0.7 22 272-293 11-32 (81)
53 cd00152 PTX Pentraxins are pla 26.0 90 0.0019 27.1 3.8 27 177-203 87-113 (201)
54 smart00560 LamGL LamG-like jel 25.7 98 0.0021 24.8 3.8 24 180-203 61-84 (133)
55 TIGR01495 ETRAMP Plasmodium ri 25.2 39 0.00084 25.8 1.2 30 266-295 49-78 (85)
56 PF02480 Herpes_gE: Alphaherpe 24.9 24 0.00052 35.0 0.0 7 245-251 294-300 (439)
57 PF03229 Alpha_GJ: Alphavirus 24.2 19 0.00041 29.1 -0.7 23 267-289 82-104 (126)
58 PTZ00208 65 kDa invariant surf 22.9 32 0.00069 33.7 0.4 30 266-295 385-414 (436)
59 PF08374 Protocadherin: Protoc 22.7 28 0.00062 31.1 0.0 16 266-281 36-51 (221)
60 PF02009 Rifin_STEVOR: Rifin/s 21.9 25 0.00054 33.2 -0.5 17 277-293 267-283 (299)
61 PF05454 DAG1: Dystroglycan (D 21.0 32 0.0007 32.2 0.0 10 287-297 166-175 (290)
62 PF13619 KTSC: KTSC domain 20.2 1.2E+02 0.0025 21.1 2.8 18 185-202 7-24 (60)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=5.9e-59 Score=420.53 Aligned_cols=230 Identities=43% Similarity=0.707 Sum_probs=206.8
Q ss_pred eeEEeCCCCCCCCCeEEecceeee-cCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCC
Q 045189 20 VSFRMSSFDPNGKDIIYQGDAVPS-VGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYG 98 (299)
Q Consensus 20 ~sF~f~~F~~~~~~l~l~G~A~~~-~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~g 98 (299)
++|+|++|..+..+|.++|+|.+. ++.|+||++.+..+++|||||++||+||++.+++++||+|+|+|+|.+.....+|
T Consensus 1 ~~f~f~~f~~~~~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~~~~~~sFst~F~F~i~~~~~~~~g 80 (236)
T cd06899 1 LSFNFNGFSSDQSNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDSTTGKVASFSTSFSFSITPPNPSLGG 80 (236)
T ss_pred CceecCCCCCCCCCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCCCCCceeEEEEEEEEEEcCCCCCCC
Confidence 479999998545789999999998 7999999982117899999999999999999999999999999999987666799
Q ss_pred cceEEEEccCCCCCCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCC-CCCCCCCCcEEEEcCCCcceeeeeccc--
Q 045189 99 HGLVFFLAPAGFQIPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNRE-WDPSGVQDHVGINNNSIASAVHTRWNA-- 175 (299)
Q Consensus 99 dGlAF~l~p~~~~~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~-~Dp~~~~nHVgI~ins~~S~~~~~~~~-- 175 (299)
|||||+|+|.... +.+..|++|||++.+++++..++.|||||||++|++ +||+. +||||++|++.|..+..|..
T Consensus 81 dGlAF~i~~~~~~-~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~--nHigIdvn~~~S~~~~~~~~~~ 157 (236)
T cd06899 81 DGLAFFLAPTDSL-PPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDD--NHVGIDVNSLVSVKAGYWDDDG 157 (236)
T ss_pred CeEEEEEecCCCC-CCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCC--CeEEEEcCCcccceeecccccc
Confidence 9999999997743 346889999999887666678999999999999987 69999 99999999998888777653
Q ss_pred -ccCCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEEEec
Q 045189 176 -SFHSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEFSSS 253 (299)
Q Consensus 176 -~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF~s~ 253 (299)
.+.+|+.++|||+||+.+++|+|+|++... .+|..|++++.+||+.+|+++|||||||+||...|.|+|++|+|+++
T Consensus 158 ~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~-~~~~~~~ls~~vdL~~~l~~~~~vGFSasTG~~~~~h~i~sWsF~s~ 235 (236)
T cd06899 158 GKLKSGKPMQAWIDYDSSSKRLSVTLAYSGV-AKPKKPLLSYPVDLSKVLPEEVYVGFSASTGLLTELHYILSWSFSSN 235 (236)
T ss_pred ccccCCCeEEEEEEEcCCCCEEEEEEEeCCC-CCCcCCEEEEeccHHHhCCCceEEEEEeEcCCCcceEEEEEEEEEcC
Confidence 368999999999999999999999998765 47889999999999999999999999999999999999999999986
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=2e-57 Score=410.54 Aligned_cols=225 Identities=40% Similarity=0.596 Sum_probs=200.1
Q ss_pred eeeEEeCCCCCCCCCeEEecceee-ecCeEEeccCCCcc-ceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecC--CC
Q 045189 19 SVSFRMSSFDPNGKDIIYQGDAVP-SVGVIELINRYQYV-CRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQ--SR 94 (299)
Q Consensus 19 ~~sF~f~~F~~~~~~l~l~G~A~~-~~g~i~LT~~~~~~-~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~--~~ 94 (299)
+++|+|++|. +..+++++|+|.+ .+++|+||++ .. +|+|||||++||+|||+.++++++|+|+|+|+|... ..
T Consensus 1 ~~~F~~~~F~-~~~~~~l~G~A~~~~~~~l~LT~~--~~~~~~G~~~y~~pi~l~d~~~~~~~sF~t~F~f~i~~~~~~~ 77 (236)
T PF00139_consen 1 SVSFSFPSFS-NSSNLTLNGDASISSNGSLQLTPD--STNNQAGRAWYNNPIQLWDSTTGNVASFSTSFSFSITNGPGSS 77 (236)
T ss_dssp EEEEEESSBT-TGTTEEEEETEEEETTSEEESSTB--ETSSEEEEEEESSEEESBETTTTEBEEEEEEEEEEEEESSSSS
T ss_pred CceEEcCCCC-CCCceEEEeeEEeccCCeEEcCCC--CCCCcEEEEEECCcEEEeCCCCcceeeeeeEEEEEEeccCCCC
Confidence 4789999993 3589999999999 5799999998 56 899999999999999999999999999999999642 46
Q ss_pred CCCCcceEEEEccCCCCCCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCC-CCCCCCCCcEEEEcCCCcceeeee-
Q 045189 95 PTYGHGLVFFLAPAGFQIPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNRE-WDPSGVQDHVGINNNSIASAVHTR- 172 (299)
Q Consensus 95 ~~~gdGlAF~l~p~~~~~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~-~Dp~~~~nHVgI~ins~~S~~~~~- 172 (299)
..+||||||+|+|++ .++.++.|++||+.+...++..+++.||||||||+|.+ +||++ +||||++|++.+..+.+
T Consensus 78 ~~~~dGlAFvi~~~~-~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~--nHIgI~~n~~~s~~~~~~ 154 (236)
T PF00139_consen 78 NNGGDGLAFVIQPDP-NLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDD--NHIGIDVNSVVSNKTASA 154 (236)
T ss_dssp SS-BEEEEEEEEETT-SSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSS--SEEEEEESSSSESEEEE-
T ss_pred ccCCCceEEEEecCc-ccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCC--CEEEEECCCCcccccccc
Confidence 679999999999987 66667799999999876666668999999999999988 89999 99999999999887743
Q ss_pred -----cccccCCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEE
Q 045189 173 -----WNASFHSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILES 247 (299)
Q Consensus 173 -----~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~Ils 247 (299)
...++.+|+.++|||+||+.+++|+|+|+... .+|..|++++.+||+.+|+++||||||||||...|.|+|++
T Consensus 155 ~~~~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~--~~~~~~~l~~~vdL~~~l~~~v~vGFsasTG~~~~~h~I~s 232 (236)
T PF00139_consen 155 GYYSSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS--SKPSSPVLSVNVDLSAVLPEQVYVGFSASTGGSYQTHDILS 232 (236)
T ss_dssp ---EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT--TTSEEEEEEEE--HHHHSCSEEEEEEEEEESSSSEEEEEEE
T ss_pred cccccccccccCCcEEEEEEEEcCCccEEEEEEeccc--CCCcceeEEEEEchHHhcCCCcEEEEEeecCCCcceEEEEE
Confidence 34568899999999999999999999999874 48999999999999999999999999999999999999999
Q ss_pred EEEE
Q 045189 248 WEFS 251 (299)
Q Consensus 248 WsF~ 251 (299)
|+|+
T Consensus 233 W~F~ 236 (236)
T PF00139_consen 233 WSFS 236 (236)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9996
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=6e-44 Score=319.51 Aligned_cols=199 Identities=28% Similarity=0.406 Sum_probs=169.5
Q ss_pred CCCeEEecceeee--cCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccC
Q 045189 31 GKDIIYQGDAVPS--VGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPA 108 (299)
Q Consensus 31 ~~~l~l~G~A~~~--~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~ 108 (299)
..++.++|+|.+. ++.|+||++ ..+++|++||++||++| ++|+|+|+|+|.+.. ..+||||||+|+|.
T Consensus 13 ~~~~~~~G~A~~~~~~~~l~Lt~~--~~~~~G~~~~~~~i~~~-------~~F~~~F~f~i~~~~-~~~gdG~aF~l~~~ 82 (223)
T cd01951 13 QSNWQLNGSATLTTDSGVLRLTPD--TGNQAGSAWYKTPIDLS-------KDFTTTFKFYLGTKG-TNGADGIAFVLQND 82 (223)
T ss_pred hhhcEEcccEEecCCCCEEEECCC--CCCcEEEEEECCcEecc-------CCEEEEEEEEEeCCC-CCCCCcEEEEEecC
Confidence 4689999999998 789999998 68899999999999998 599999999999753 56899999999997
Q ss_pred CCCCCCCCCC--CccccccCCCCCCCCCcEEEEEEeCccCCC-CCCCCCCCcEEEEcCCCcce-------eeeecccccC
Q 045189 109 GFQIPPNSAG--GFLGLFNTTTSFSSSNHIVHVEFDTYFNRE-WDPSGVQDHVGINNNSIASA-------VHTRWNASFH 178 (299)
Q Consensus 109 ~~~~~~~~~G--~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~-~Dp~~~~nHVgI~ins~~S~-------~~~~~~~~l~ 178 (299)
+.. +.+..| ++||+ ...++.+|||||||+|.+ +||+. +||||++|+..+. .+..++....
T Consensus 83 ~~~-~~~~~g~~~~lG~-------~~~~~~~aVefDT~~N~~~~dp~~--~higi~~n~~~~~~~~~~~~~~~~~~~~~~ 152 (223)
T cd01951 83 PAG-ALGGGGGGGGLGY-------GGIGNSVAVEFDTYKNDDNNDPNG--NHISIDVNGNGNNTALATSLGSASLPNGTG 152 (223)
T ss_pred CCC-ccccCCCCCccCc-------cccCCeEEEEEeccccCCCCCCCC--CEEEEEcCCCCCCcccccccceeeCCCccC
Confidence 633 334444 78887 356789999999999987 79999 9999999998643 2223332233
Q ss_pred CCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEEEe
Q 045189 179 SEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEFSS 252 (299)
Q Consensus 179 ~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF~s 252 (299)
+|+.++|||+|++.+++|+|+|++.. .|..++++..+||+..++++||||||||||...|.|+|++|+|++
T Consensus 153 ~g~~~~v~I~Y~~~~~~L~v~l~~~~---~~~~~~l~~~~~l~~~~~~~~yvGFTAsTG~~~~~h~V~~wsf~~ 223 (223)
T cd01951 153 LGNEHTVRITYDPTTNTLTVYLDNGS---TLTSLDITIPVDLIQLGPTKAYFGFTASTGGLTNLHDILNWSFTS 223 (223)
T ss_pred CCCEEEEEEEEeCCCCEEEEEECCCC---ccccccEEEeeeecccCCCcEEEEEEcccCCCcceeEEEEEEecC
Confidence 39999999999999999999998754 266789999999999999999999999999999999999999963
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.95 E-value=1e-25 Score=201.27 Aligned_cols=187 Identities=23% Similarity=0.249 Sum_probs=138.9
Q ss_pred CCCeEEecceeeecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCC
Q 045189 31 GKDIIYQGDAVPSVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGF 110 (299)
Q Consensus 31 ~~~l~l~G~A~~~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~ 110 (299)
..+|.+.|+|.+.++.|+||++ .+++.|++||+.|+++ ++|+++|+|+|.+.. ..+||||||+|+|...
T Consensus 19 ~~~w~~~G~a~~~~~~i~LT~~--~~~~~G~~~~~~pi~~--------~~F~~~f~F~i~~~~-~~~gdG~af~~~~~~~ 87 (218)
T cd07308 19 IGNWTVGGSTVITKNYIRLTPD--VPSQSGSLWSRVPIPA--------KDFEIEVEFSIHGGS-GLGGDGFAFWYTEEPG 87 (218)
T ss_pred cCCeEEcCCeEEeCCEEEeCCC--CCCCEeEEEeCCCccC--------CCEEEEEEEEEeCCC-CCCCCEEEEEEECCCC
Confidence 3579999999999999999998 6889999999999997 489999999998753 5689999999999642
Q ss_pred CCCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCCCCCCCCCCcEEEEcCC-Ccceee------e---ecccccC-C
Q 045189 111 QIPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNREWDPSGVQDHVGINNNS-IASAVH------T---RWNASFH-S 179 (299)
Q Consensus 111 ~~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~nHVgI~ins-~~S~~~------~---~~~~~l~-~ 179 (299)
..|..+|.. ...+.+||||||+.|. +... .+|.+.+|. ..+... . .+..... .
T Consensus 88 -----~~g~~~G~~-------~~~~Glai~fdt~~n~--~~~~--p~i~~~~Ndg~~~~~~~~d~~~~~~~~c~~~~~~~ 151 (218)
T cd07308 88 -----SDGPLFGGP-------DKFKGLAIFFDTYDND--GKGF--PSISVFLNDGTKSYDYETDGEKLELASCSLKFRNS 151 (218)
T ss_pred -----CCCcccccC-------CCCCEEEEEEEcCCCC--CCCC--CeEEEEEeCCCceecccCCCccccccceeEecccC
Confidence 244556652 3467899999999985 2223 456655542 222110 0 1111222 2
Q ss_pred CCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEEE
Q 045189 180 EDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEFS 251 (299)
Q Consensus 180 G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF~ 251 (299)
+.+.+++|.|+ .+.|.|.+.... +.....+..++. ..+|+..|+||||+||...+.|+|++|.+.
T Consensus 152 ~~~~~~~I~y~--~~~l~v~i~~~~----~~~~~~c~~~~~-~~l~~~~y~G~sA~tg~~~d~~dIls~~~~ 216 (218)
T cd07308 152 NAPTTLRISYL--NNTLKVDITYSE----GNNWKECFTVED-VILPSQGYFGFSAQTGDLSDNHDILSVHTY 216 (218)
T ss_pred CCCeEEEEEEE--CCEEEEEEeCCC----CCCccEEEEcCC-cccCCCCEEEEEeccCCCcCcEEEEEEEee
Confidence 67899999999 578999997532 223345555553 247889999999999999999999999875
No 5
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.89 E-value=3.9e-21 Score=174.76 Aligned_cols=195 Identities=18% Similarity=0.189 Sum_probs=136.4
Q ss_pred CCCeEEecceeeecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCC
Q 045189 31 GKDIIYQGDAVPSVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGF 110 (299)
Q Consensus 31 ~~~l~l~G~A~~~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~ 110 (299)
..+|.+.|+|.+.++.||||++ .+++.|++||+.|+++ .+|+++|+|+|.+.....+||||||+++....
T Consensus 19 i~~w~~~G~a~v~~~~IrLTp~--~~~~~G~~w~~~p~~~--------~~F~~~f~F~I~~~~~~~~GdGlAfw~t~~~~ 88 (248)
T cd06901 19 MPLWDFLGSTMVTSQYIRLTPD--HQSKQGSIWNRVPCYL--------RDWEMHVHFKVHGSGKNLFGDGFAIWYTKERM 88 (248)
T ss_pred CCCEEEcceEEEcCCeEEECCC--CCCCEEEEeccCCccC--------CCEEEEEEEEEeCCCCCCCCCEEEEEEEcCCC
Confidence 3689999999999899999998 6678999999999997 47999999999986556789999999998641
Q ss_pred CCCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCCC--CCCCCCCcEEEEcC-CCcceee---------eeccccc-
Q 045189 111 QIPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNREW--DPSGVQDHVGINNN-SIASAVH---------TRWNASF- 177 (299)
Q Consensus 111 ~~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~--Dp~~~~nHVgI~in-s~~S~~~---------~~~~~~l- 177 (299)
..|..+|.. ..-..+||.|||+.|.+. .... +-|.+.+| +...... ..+...+
T Consensus 89 -----~~G~~fG~~-------~~f~Gl~I~~Dt~~n~~~~~~~~~--P~i~~~~NDGt~~yd~~~Dg~~~~~~~C~~~~r 154 (248)
T cd06901 89 -----QPGPVFGSK-------DNFHGLAIFFDTYSNQNGEHEHVH--PYISAMVNNGSLSYDHDRDGTHTELAGCSAPFR 154 (248)
T ss_pred -----ccCcccccC-------CCCceEEEEEECCCCCCCcccCCC--ceEEEEEcCCCeeecccCCCchhhcCceeeecc
Confidence 334445542 234579999999998631 1222 34544444 3221111 0111122
Q ss_pred CCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEEEecccC
Q 045189 178 HSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEFSSSLDI 256 (299)
Q Consensus 178 ~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF~s~~~~ 256 (299)
+.+...+++|.|... .|+|.++..+. .....+..++ ...||...|+||||+||+..+.|+|++-.+..-..+
T Consensus 155 n~~~~t~~rI~Y~~~--~l~v~vd~~~~----~~w~~Cf~~~-~v~LP~~~yfGiSA~Tg~~sd~hdIlsv~~~~l~~~ 226 (248)
T cd06901 155 NKDHDTFVAIRYSKG--RLTVMTDIDGK----NEWKECFDVT-GVRLPTGYYFGASAATGDLSDNHDIISMKLYELDVE 226 (248)
T ss_pred CCCCCeEEEEEEECC--eEEEEEecCCC----CceeeeEEeC-CeecCCCCEEEEEecCCCCCCcEEEEEEEEecCccc
Confidence 334557899999974 68888875432 1122233332 224788899999999999999999999888765433
No 6
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.88 E-value=9.8e-21 Score=169.93 Aligned_cols=192 Identities=19% Similarity=0.212 Sum_probs=136.3
Q ss_pred CCCeEEecceeeecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCC
Q 045189 31 GKDIIYQGDAVPSVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGF 110 (299)
Q Consensus 31 ~~~l~l~G~A~~~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~ 110 (299)
...|.+.|+|.+.++.||||++ .+++.|.+|.+.|++. .+|+++|+|+|.+.. ..+||||||+++...
T Consensus 21 i~~W~~~G~t~~~~~~IrLTp~--~~~~~G~iw~~~~~~~--------~~w~ie~~Fri~g~~-~~~gdG~a~W~t~~~- 88 (225)
T cd06902 21 VPFWSHGGDAIASLEQVRLTPS--LRSKKGSVWTKNPFSF--------ENWEVEVTFRVTGRG-RIGADGLAIWYTKER- 88 (225)
T ss_pred CCceEecccEEecCCEEEECCC--CCCCEEEEeeCCCcCC--------CCEEEEEEEEEecCC-CCCCCEEEEEEECCC-
Confidence 3579999999999999999998 7899999999999983 479999999999753 357899999999864
Q ss_pred CCCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCCCCCCCCCCcEEEEcCCC-cceeee---------eccccc-CC
Q 045189 111 QIPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNREWDPSGVQDHVGINNNSI-ASAVHT---------RWNASF-HS 179 (299)
Q Consensus 111 ~~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~nHVgI~ins~-~S~~~~---------~~~~~l-~~ 179 (299)
+..|+.+|.. ..-..+||.|||+.|.+ .... ..|.+..|.- ...... .+.... +.
T Consensus 89 ----~~~G~~~G~~-------~~f~Gl~I~~Dt~~n~~-~~~~--p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~rn~ 154 (225)
T cd06902 89 ----GEEGPVFGSS-------DKWNGVGIFFDSFDNDG-KKNN--PAILVVGNDGTKSYDHQNDGLTQALGSCLRDFRNK 154 (225)
T ss_pred ----CCCCCccCCC-------CcccEEEEEEECCCCCC-CCCC--cEEEEEECCCCeeccccCCCcccccceEEEeccCC
Confidence 1345566653 23568999999998863 3333 5665555432 111110 111122 23
Q ss_pred CCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEEEe
Q 045189 180 EDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEFSS 252 (299)
Q Consensus 180 G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF~s 252 (299)
..+.+++|.|.. +.|+|.++.... .+......+..++ .-.||+..|+||||+||+..+.|+|++|++.+
T Consensus 155 ~~p~~~rI~Y~~--~~l~V~~d~~~~-~~~~~~~~Cf~~~-~v~LP~~~yfGiSA~Tg~l~d~hDIls~~~~s 223 (225)
T cd06902 155 PYPVRAKITYYQ--NVLTVSINNGFT-PNKDDYELCTRVE-NMVLPPNGYFGVSAATGGLADDHDVLSFLTFS 223 (225)
T ss_pred CCCeEEEEEEEC--CeEEEEEeCCcC-CCCCcccEEEecC-CeeCCCCCEEEEEecCCCCCCcEeEEEEEEec
Confidence 567899999998 469998874321 1111222333322 12478889999999999999999999999874
No 7
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=99.79 E-value=2.8e-17 Score=148.08 Aligned_cols=191 Identities=23% Similarity=0.254 Sum_probs=126.6
Q ss_pred CCeEEecceeeecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCCC
Q 045189 32 KDIIYQGDAVPSVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGFQ 111 (299)
Q Consensus 32 ~~l~l~G~A~~~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~~ 111 (299)
..|.+.|+|.+.++.||||++ .+++.|.+|.+.|++. .+|+.+|+|+|.+.....+||||||+++....
T Consensus 22 ~~W~~~G~t~i~~~~IrLTp~--~~~~~G~iws~~~~~~--------~~w~i~~~Fri~g~~~~~~g~G~a~W~t~~~~- 90 (229)
T PF03388_consen 22 PNWDIGGSTVITDNFIRLTPD--RQSQSGSIWSRKPIPF--------DNWEIEFTFRISGQEKGLGGDGMAFWYTKDPG- 90 (229)
T ss_dssp TTEEEEET-EEESSEEEEE-S--STTEEEEEEESS-BEE--------SEEEEEEEEEEESS-SSS-S-EEEEEEESSSS-
T ss_pred CCEEECCeEEecCCEEEECCC--cccCEEEEEEcCCCCc--------cCEEEEEEEEEeccccCcCCCeEEEEEEcCcc-
Confidence 479999999999999999998 7899999999999997 38999999999987556689999999997541
Q ss_pred CCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCC-C-CCCCCCCcEEEEcCCC-cceee---------eecccccC-
Q 045189 112 IPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNRE-W-DPSGVQDHVGINNNSI-ASAVH---------TRWNASFH- 178 (299)
Q Consensus 112 ~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~-~-Dp~~~~nHVgI~ins~-~S~~~---------~~~~~~l~- 178 (299)
..|..+|.. ..-..+||-||||.|.+ . .... ..|.+.+|.- ..... ..+...+.
T Consensus 91 ----~~G~~fG~~-------~~f~Gl~i~idt~~N~~~~~~~~~--p~i~~~~NDGt~~~~~~~dg~~~~~~~C~~~~rn 157 (229)
T PF03388_consen 91 ----SDGPVFGGP-------DKFDGLGIFIDTYDNDEGGHKRGF--PYISAMLNDGTKSYDHDNDGKDQSLGSCSADYRN 157 (229)
T ss_dssp ----SSCSBTTB--------SS-EEEEEEEEES-TTCTTCTSTS--SEEEEEEEESSS---GGGTTTTT-SEEEE---BT
T ss_pred ----ccccccCCC-------cccceEEEEEEcccCCCccccccc--ceEEEEecCCCccccccccCcccccccceeccCc
Confidence 255666653 23467999999999863 1 1223 5566665532 11110 01112222
Q ss_pred CCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEE
Q 045189 179 SEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEF 250 (299)
Q Consensus 179 ~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF 250 (299)
.+.+.+++|.|... .|+|.++..-. ........+..++ .-.||+..|+||||+||...+.|+|++-..
T Consensus 158 ~~~p~~~ri~Y~~~--~l~v~id~~~~-~~~~~~~~Cf~~~-~v~LP~~~yfGvSA~Tg~~~d~hdi~s~~~ 225 (229)
T PF03388_consen 158 SDVPTRIRISYSKN--TLTVSIDSNYL-KNQDDWELCFTTD-GVDLPEGYYFGVSAATGELSDNHDILSVKT 225 (229)
T ss_dssp ESSEEEEEEEEETT--EEEEEEETSCC-SECCTTEEEEEES-TEEGGSSBEEEEEEEESSSGGEEEEEEEEE
T ss_pred CCCCEEEEEEEECC--eEEEEEecccc-cCCcCCcEEEEcC-CeecCCCCEEEEEecCCCCCCcEEEEEEEE
Confidence 35677999999975 67888773210 0111223343332 224788899999999999999999998654
No 8
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.78 E-value=4e-17 Score=145.54 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=127.5
Q ss_pred CCCeEEecceeeecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCC
Q 045189 31 GKDIIYQGDAVPSVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGF 110 (299)
Q Consensus 31 ~~~l~l~G~A~~~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~ 110 (299)
..+|.+.|+|.+.++.|+||++ +++.|.+|-+.|+++.+ +|+.+|+|+|+++. ..+||||||+++..+.
T Consensus 20 i~~W~~~G~t~v~~~~IrLTp~---~s~~G~iWs~~pl~~~~-------~w~ie~~Fri~G~~-~~~gdGla~W~t~~~~ 88 (215)
T cd06903 20 IPNWQTSGNPKLESGRIILTPP---GNQRGSLWLKKPLSLKD-------EWTIEWTFRSTGPE-GRSGGGLNFWLVKDGN 88 (215)
T ss_pred CCCeEEcCcEEeeCCeEEECCC---CCceEeEeeCCcCCCCC-------CEEEEEEEEecccC-CcCCCEEEEEEECCCc
Confidence 3579999999999999999997 68999999999999742 79999999999753 3689999999997642
Q ss_pred CCCCCCCC-CccccccCCCCCCCCCcEEEEEEeCccCCCCCCCCCCCcEEEEcC-CCcceeee--------ecccc-cCC
Q 045189 111 QIPPNSAG-GFLGLFNTTTSFSSSNHIVHVEFDTYFNREWDPSGVQDHVGINNN-SIASAVHT--------RWNAS-FHS 179 (299)
Q Consensus 111 ~~~~~~~G-~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~nHVgI~in-s~~S~~~~--------~~~~~-l~~ 179 (299)
. ..| ..+|-. ..-..+||.|||+.|.. ..|.+..| +....... .+... .+.
T Consensus 89 ~----~~g~~~fG~~-------~~f~Gl~I~~Dt~~n~~-------p~i~~~~NDGt~~yd~~~d~~~~~g~C~~~~rn~ 150 (215)
T cd06903 89 A----DVGTSSIYGP-------SKFDGLQLLIDNNGGSG-------GSLRGFLNDGSKDYKNEDVDSLAFGSCLFAYQDS 150 (215)
T ss_pred c----cCCccccCCC-------CCCcEEEEEEECCCCCC-------ceEEEEECCCCeeccccCCcccccceeeEeccCC
Confidence 1 111 233321 23457899999998741 23333333 22211111 11112 345
Q ss_pred CCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccC-ceeEEEEEeecCCcccceEEEEEEEEe
Q 045189 180 EDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLP-QWVTIGFSAATSQFGERHILESWEFSS 252 (299)
Q Consensus 180 G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~-~~vyvGFSAsTG~~~~~h~IlsWsF~s 252 (299)
+.+.+++|.|....+.|+|.++. +.|+ .++ .-.|| ...|+||||+||+..+.|+|++..+..
T Consensus 151 ~~p~~iri~Y~~~~~~l~v~vd~--------~~Cf--~~~-~v~lP~~~y~fGiSAaTg~~~d~hdIl~~~~~~ 213 (215)
T cd06903 151 GVPSTIRLSYDALNSLFKVQVDN--------RLCF--QTD-KVQLPQGGYRFGITAANADNPESFEILKLKVWN 213 (215)
T ss_pred CCCEEEEEEEECCCCEEEEEECC--------CEEE--ecC-CeecCCCCCEEEEEEcCCCCCCcEEEEEEEEec
Confidence 67889999999877789998853 1233 322 12356 567899999999999999999877653
No 9
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.7e-14 Score=132.96 Aligned_cols=191 Identities=21% Similarity=0.224 Sum_probs=134.3
Q ss_pred CCCeEEecceeeecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCC
Q 045189 31 GKDIIYQGDAVPSVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGF 110 (299)
Q Consensus 31 ~~~l~l~G~A~~~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~ 110 (299)
..+|.+.|++.++.+.||||++ .+++.|.+|-..|+.. .+|...+.|+++.+.+...|||||++++-+..
T Consensus 71 ~~~W~~~Gstvv~~~~irLT~d--~qsk~GAv~n~~Pv~s--------~~wev~v~fkv~~~s~~lfgdG~Aiw~t~Er~ 140 (351)
T KOG3839|consen 71 QPNWNLSGSTVVTSNYIRLTPD--EQSKSGAVWNRQPVFS--------RDWEVLVHFKVHGQSKNLFGDGMAIWYTKERA 140 (351)
T ss_pred ccCccccccEEEEeeeeecccc--ccccccccccCCCccc--------cceeEEEEEEEecCCCcccccceEEEeecccc
Confidence 4579999999999999999999 8999999999999985 47999999999998888899999999998652
Q ss_pred CCCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCCCCCCCCCCcEEEEcCC-Ccceee------ee---cccccCCC
Q 045189 111 QIPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNREWDPSGVQDHVGINNNS-IASAVH------TR---WNASFHSE 180 (299)
Q Consensus 111 ~~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~nHVgI~ins-~~S~~~------~~---~~~~l~~G 180 (299)
..|..+|-..+ -+.+||-.|||-|.++-+.....-+.+.+|. ..|... +. +...+++.
T Consensus 141 -----q~GPvFG~~dk-------F~GL~vfidtY~n~~g~~~~v~P~isvmv~~gs~sYD~~~Dg~~tel~gc~a~~rn~ 208 (351)
T KOG3839|consen 141 -----QPGPVFGSKDK-------FTGLAVFIDTYGNHNGPHEHVFPYISVMVNIGSLSYDHSKDGTHTELAGCTANFRNL 208 (351)
T ss_pred -----cCCCCCCCccc-------ceeEEEEEeccCCcCCCcccceeeEEEEeccCCcccccCCCCCccccccceeeeccC
Confidence 35667776432 3569999999998632222211234444431 111110 11 11122222
Q ss_pred C-eeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEE
Q 045189 181 D-TADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEF 250 (299)
Q Consensus 181 ~-~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF 250 (299)
. ...+-|.|+. +.|++..+..+ |..-..+..++ ...||.--|+|+||+||+.++.|+|++-.+
T Consensus 209 ~~dt~~~iry~~--~~l~~~~dl~~----~~~~~~c~~~n-~v~lp~g~~fg~SasTGdlSd~HdivS~kl 272 (351)
T KOG3839|consen 209 PHDTLVVIRYEK--KTLSISIDLEG----PNEWIDCFSLN-NVELPLGYFFGVSASTGDLSDSHDIVSLKL 272 (351)
T ss_pred CCcceeEEEecC--CceEEEEecCC----Cceeeeeeeec-ceecccceEEeeeeccCccchhhHHHHhhh
Confidence 1 2367899998 57777776643 33434444443 234788999999999999999999998754
No 10
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.8e-13 Score=128.23 Aligned_cols=187 Identities=19% Similarity=0.233 Sum_probs=134.3
Q ss_pred eEEecceeeecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCCCCC
Q 045189 34 IIYQGDAVPSVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGFQIP 113 (299)
Q Consensus 34 l~l~G~A~~~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~~~~ 113 (299)
|...|||..+...|||++. ..++.|.+|-+..+++- .|..+..|++++. ...++||||++.+...
T Consensus 56 W~~~GdAIas~eqvRlaPS--mrsrkGavWtka~~~fe--------~weVev~~rVtGr-GRiGAdGlaiWYt~~~---- 120 (497)
T KOG3838|consen 56 WSHHGDAIASSEQVRLAPS--MRSRKGAVWTKASVPFE--------NWEVEVQFRVTGR-GRIGADGLAIWYTRGR---- 120 (497)
T ss_pred eeecCcccccccceeeccc--cccccCceeecccCCcc--------cceEEEEEEeccc-ccccCCceEEEEecCC----
Confidence 8899999998899999998 88999999999888864 6999999999986 5679999999998743
Q ss_pred CCCCCCccccccCCCCCCCCCcEEEEEEeCccCCCCCCCCCCCcEEEEcCCCc-ceeeee------cc---cccCC-CCe
Q 045189 114 PNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNREWDPSGVQDHVGINNNSIA-SAVHTR------WN---ASFHS-EDT 182 (299)
Q Consensus 114 ~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~nHVgI~ins~~-S~~~~~------~~---~~l~~-G~~ 182 (299)
|--|..+|-. ..=..++|-||.+.|+ +..++ ..|.+..|.-. +..... ++ .+++| --+
T Consensus 121 -G~~GpVfGg~-------d~WnGigiffDSfdnD-~qknn--P~Is~~lndGt~~ydh~~DGasQ~LssCqrDFRNkPyP 189 (497)
T KOG3838|consen 121 -GHVGPVFGGL-------DSWNGIGIFFDSFDND-GQKNN--PAISVLLNDGTIPYDHPGDGASQGLSSCQRDFRNKPYP 189 (497)
T ss_pred -Cccccccccc-------ccccceEEEeeccccc-CCcCC--ccEEEEecCCcccccCCCccHHHHHHHhhHHhccCCCC
Confidence 2334444431 1223579999999986 34455 67777766432 211110 11 23333 246
Q ss_pred eEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEEeecCCcccceEEEEEEEE
Q 045189 183 ADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFSAATSQFGERHILESWEFS 251 (299)
Q Consensus 183 ~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFSAsTG~~~~~h~IlsWsF~ 251 (299)
.+++|+|-. ++|+|.+.. ++.+. ..+-++.+++ .-.||..-|+|.||+||++.+-|+|+++..-
T Consensus 190 vRarItY~~--nvLtv~inn-Gmtp~-d~yE~C~rve-~~~lp~nGyFGvSAATGgLADDHDVl~Fltf 253 (497)
T KOG3838|consen 190 VRARITYYG--NVLTVMINN-GMTPS-DDYEFCVRVE-NLLLPPNGYFGVSAATGGLADDHDVLSFLTF 253 (497)
T ss_pred ceEEEEEec--cEEEEEEcC-CCCCC-CCcceeEecc-ceeccCCCeeeeeecccccccccceeeeEEe
Confidence 799999986 599999975 33222 2344555554 2357899999999999999999999998543
No 11
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=99.19 E-value=1.9e-09 Score=96.46 Aligned_cols=196 Identities=14% Similarity=0.135 Sum_probs=121.2
Q ss_pred ecCeEEeccCCCccceEEEEEeCCCeeccCCCCCCceeeEEEEEEEEecCCCCCCCcceEEEEccCCCCCC-CCCCCCcc
Q 045189 43 SVGVIELINRYQYVCRVGWATYADRVPLWDSDTGELTDFSTKFSFQIDTQSRPTYGHGLVFFLAPAGFQIP-PNSAGGFL 121 (299)
Q Consensus 43 ~~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t~~~asFst~F~F~I~~~~~~~~gdGlAF~l~p~~~~~~-~~~~G~~L 121 (299)
.+|.||||++ ..+|+|.+.|.+++|--+ .-...+|.+..-.. ...+||||||||+-.. ..| .+..|+.|
T Consensus 30 ~~g~LRLT~~--~~nqata~~~~~~FPs~~------n~v~veFd~yayg~-~g~GADGia~vLsDas-v~p~~G~fGGsL 99 (255)
T cd06900 30 VNNRLRLTDA--SGNQATAVTLQRLFPSAG------NYVEVEFDYYAYGS-GGNGADGVALVLSDAS-VTPQAGAFGGSL 99 (255)
T ss_pred ccCeEEeccC--ccCcceeEEEeeeeccCC------CeEEEEEEEEEecC-CCCCCceEEEEEeCCC-cCCcCCCcCccc
Confidence 4689999998 789999999999998532 24888999888764 5678999999998533 222 47889999
Q ss_pred ccccCC-CCCCCCCcEEEEEEeCccCCC--CC-----CCCCCCcEEEEcCCCcceeee------ecc--cccCC----CC
Q 045189 122 GLFNTT-TSFSSSNHIVHVEFDTYFNRE--WD-----PSGVQDHVGINNNSIASAVHT------RWN--ASFHS----ED 181 (299)
Q Consensus 122 Gl~n~~-~~~~~~~~~vAVEFDT~~n~~--~D-----p~~~~nHVgI~ins~~S~~~~------~~~--~~l~~----G~ 181 (299)
||.-++ .........++|-||-|-|.. .+ |....+.|+|.--+..-..+. ..+ ++..+ ..
T Consensus 100 GYa~~~~~~~GfaGGwLGiGlDEyGNFsn~~eg~~~~~g~r~~sV~vRGsg~g~~gY~yl~gt~~~~~~id~~~~~~~~~ 179 (255)
T cd06900 100 GYAQRNDGVPGFAGGWLGIGLDEYGNFSNPNEGRNGFSGRRPQSVTVRGSGSGYTGYKYITGTGVLPPGIDNNSTSTPAP 179 (255)
T ss_pred ccccccCCCCccccceEEEEEeccccccCCCCCccCCcccccceEEEECCCCCCcCceEecccCCCCcccccCCCCCCCC
Confidence 998654 223455678999999887742 22 111123455543221101111 111 11111 23
Q ss_pred eeEEEEEEeCCC---CeEEEEEeecCCCCCCCceeE-EEE-eccC--cccCceeEEEEEeecCCcccceEEEEEEE
Q 045189 182 TADVRIAYNSTT---KNLSVSWTYRQTSDPRENTSL-FYI-IDLT--KVLPQWVTIGFSAATSQFGERHILESWEF 250 (299)
Q Consensus 182 ~~~v~I~Yd~~~---~~L~V~l~~~~~~~~p~~~~l-s~~-vdL~--~~l~~~vyvGFSAsTG~~~~~h~IlsWsF 250 (299)
.|+=+|+-|+.. ..|+|.-+..+.. . ..+++ ... ++.. .-+|+..+++|++|||.....|+|-....
T Consensus 180 ~hrY~i~Ids~~~~~~~vsV~R~~~~gg-~-~~~~I~~~d~~~~~~q~avP~~f~lS~TgSTGgstN~HEIdnf~V 253 (255)
T cd06900 180 GHRYRITIDSTNGDNAWLSVERDIGNGG-A-YFVVILTFDALAEQNQDAIPENFYLSFTGSTGGSTNTHEIDNFQV 253 (255)
T ss_pred ceEEEEEEecCCCCceEEEEEEEccCCc-e-eEEeecceeeccccCCCCCCccEEEEEEecCCCcccceeecceEe
Confidence 466666666652 2455655532210 1 11122 111 2222 45789999999999999999999976653
No 12
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.64 E-value=0.016 Score=37.77 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=13.4
Q ss_pred eEEEEehhhHHHHHHHHHHhheeeEEeecc
Q 045189 267 IRIIVGVTVSIGVLIAAAITGLLILRRRKK 296 (299)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
..+.+++.+..+++++++++++++ |+||+
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~-~~rR~ 39 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFF-WYRRK 39 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhhe-EEecc
Confidence 345555555444444444444444 44444
No 13
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=94.64 E-value=0.048 Score=52.25 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=41.7
Q ss_pred ceeEEEEEeecCCcccceEEEEEEEEecccCCCCCCCCCceeE--EEEehhhHHHHHHHHHHhheeeEEeecc
Q 045189 226 QWVTIGFSAATSQFGERHILESWEFSSSLDIKSTNGTDGKKIR--IIVGVTVSIGVLIAAAITGLLILRRRKK 296 (299)
Q Consensus 226 ~~vyvGFSAsTG~~~~~h~IlsWsF~s~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
..+.|=|..+++..+..+..++|++..-.-.| |.+.-+.- .++++.++..+++++++.+++|++|+|+
T Consensus 279 ~~~nvSFG~~gDgfY~~t~ylsWt~~~G~G~P---P~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 279 QGLNVSFGTSGDGFYWATNYLSWTFLIGYGSP---PVDSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred EEEEEEeccCCCCcccccceEEEEEecccCCC---CccchhHHHHHHHHHHhhHHHHHHHHhhheEEEecccc
Confidence 34788888888889999999999999874333 12222221 1223444455555555666666544443
No 14
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.54 E-value=0.16 Score=42.77 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=6.8
Q ss_pred eEEEEehhhHH
Q 045189 267 IRIIVGVTVSI 277 (299)
Q Consensus 267 ~~~~~~~~v~~ 277 (299)
+.++||++|+.
T Consensus 48 knIVIGvVVGV 58 (154)
T PF04478_consen 48 KNIVIGVVVGV 58 (154)
T ss_pred ccEEEEEEecc
Confidence 35677766663
No 15
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=88.77 E-value=0.29 Score=38.26 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=10.4
Q ss_pred ceeEEEEehhhHHHHHH
Q 045189 265 KKIRIIVGVTVSIGVLI 281 (299)
Q Consensus 265 ~~~~~~~~~~v~~~~~~ 281 (299)
.+.+-++|++|++++++
T Consensus 63 ls~gaiagi~vg~~~~v 79 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVV 79 (96)
T ss_pred cccccEEEEEeehhhHH
Confidence 34566777777655544
No 16
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=86.06 E-value=4.6 Score=37.56 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=17.0
Q ss_pred eeEEEEEEEEecCC-CCCCCcceEEEEccCC
Q 045189 80 DFSTKFSFQIDTQS-RPTYGHGLVFFLAPAG 109 (299)
Q Consensus 80 sFst~F~F~I~~~~-~~~~gdGlAF~l~p~~ 109 (299)
.+.....|.|.+.- ......-++++.+.-+
T Consensus 62 G~~~~~eF~IP~gv~~~P~v~Rl~lVyqnlG 92 (278)
T PF06697_consen 62 GVNNFSEFHIPPGVVVQPYVERLVLVYQNLG 92 (278)
T ss_pred cccccceeecCCcceecCcceEEEEEEeccC
Confidence 44444567776531 1234567778777644
No 17
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=85.66 E-value=6.3 Score=42.86 Aligned_cols=152 Identities=19% Similarity=0.167 Sum_probs=87.6
Q ss_pred CCCeEEecceeee---cCeEEeccCCCccceEEEEEeCCCeeccCCCC-----CCceeeEEEEEEEEecCCCCCCCcceE
Q 045189 31 GKDIIYQGDAVPS---VGVIELINRYQYVCRVGWATYADRVPLWDSDT-----GELTDFSTKFSFQIDTQSRPTYGHGLV 102 (299)
Q Consensus 31 ~~~l~l~G~A~~~---~g~i~LT~~~~~~~~~Gra~y~~Pi~l~d~~t-----~~~asFst~F~F~I~~~~~~~~gdGlA 102 (299)
.+.|.++|..++. ++.++|..- ....-+|++-..|+.++.+.+ .-.+.|+..|-|+... ...|||
T Consensus 803 l~~LvFNG~~Yld~~K~~~~~ls~l--~a~fkl~~iv~~paTf~sk~Sy~~la~L~ay~s~~l~Fqfkt----~sp~gl- 875 (1591)
T KOG3514|consen 803 LSGLVFNGQDYLDKCKMGDIQLSEL--SARFKLRAIVADPATFKSKSSYVKLATLQAYFSMHLFFQFKT----TSPDGL- 875 (1591)
T ss_pred hhheEECcHHHHHHHhcCCcchhhc--chhhCceEEeeccceeeechhhhhhhhhheeeEEEEEEEEee----cCCCeE-
Confidence 4679999999985 588888775 345668889999998875432 2346788887777754 245553
Q ss_pred EEEccCCCCCCCCCCCCccccccCCCCCCCCCcEEEEEEeCccCCCCCCCCCCCcEEEEcCCC-cceeeeecccccCCCC
Q 045189 103 FFLAPAGFQIPPNSAGGFLGLFNTTTSFSSSNHIVHVEFDTYFNREWDPSGVQDHVGINNNSI-ASAVHTRWNASFHSED 181 (299)
Q Consensus 103 F~l~p~~~~~~~~~~G~~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~Dp~~~~nHVgI~ins~-~S~~~~~~~~~l~~G~ 181 (299)
++-+.+ .-|.++|||.=.-+ -|--.|...- .+.+ .+-...++|.+
T Consensus 876 -l~fn~g----------------------d~ndfi~velvnG~----------ihYtfdlg~gp~~~k-~~sr~hlnDnr 921 (1591)
T KOG3514|consen 876 -LLFNSG----------------------DGNDFIAVELVNGY----------IHYTFDLGNGPTSMK-GPSRQHLNDNR 921 (1591)
T ss_pred -EEecCC----------------------CCCceEEEEEeCcE----------EEEEEEcCCCccccc-CcccCcCcccc
Confidence 332321 12568888853211 1222222111 1100 01123478889
Q ss_pred eeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEE
Q 045189 182 TADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIG 231 (299)
Q Consensus 182 ~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvG 231 (299)
+|+|-|.-|. .+.-.+.++. +....++...++| .|...+|+|
T Consensus 922 WHnV~I~rd~-~~~HtL~vD~-----s~~t~~~~g~~~l--~l~g~LyiG 963 (1591)
T KOG3514|consen 922 WHNVLIYRDK-TNTHTLKVDN-----SSTTQIIDGAVNL--DLKGKLYIG 963 (1591)
T ss_pred ceeEEEEcCC-CCceEEEecC-----ceEEEEecCcccc--ccccceecc
Confidence 9999998884 4555555543 2233444444433 356677887
No 18
>PF15102 TMEM154: TMEM154 protein family
Probab=85.42 E-value=1.3 Score=37.26 Aligned_cols=7 Identities=0% Similarity=0.230 Sum_probs=3.6
Q ss_pred EEEEehh
Q 045189 268 RIIVGVT 274 (299)
Q Consensus 268 ~~~~~~~ 274 (299)
.|.|.++
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 4555555
No 19
>PHA03265 envelope glycoprotein D; Provisional
Probab=77.75 E-value=1.1 Score=42.68 Aligned_cols=30 Identities=33% Similarity=0.315 Sum_probs=18.0
Q ss_pred CceeEEEEehhhHHHHHHHHHHhheeeEEeecc
Q 045189 264 GKKIRIIVGVTVSIGVLIAAAITGLLILRRRKK 296 (299)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
+..++++||+.|++.+++ ++++++.|||||
T Consensus 347 ~~~~g~~ig~~i~glv~v---g~il~~~~rr~k 376 (402)
T PHA03265 347 STFVGISVGLGIAGLVLV---GVILYVCLRRKK 376 (402)
T ss_pred CcccceEEccchhhhhhh---hHHHHHHhhhhh
Confidence 345688888888876654 444444455543
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=75.10 E-value=0.39 Score=39.22 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=6.0
Q ss_pred HhheeeEEeecccc
Q 045189 285 ITGLLILRRRKKKE 298 (299)
Q Consensus 285 ~~~~~~~~~r~~~~ 298 (299)
+++++|+||||||.
T Consensus 82 lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 82 LLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHS---
T ss_pred HHHHHHHHHHhccC
Confidence 34455656665553
No 21
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=74.77 E-value=0.96 Score=36.92 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=1.3
Q ss_pred eeEEEEehhhHHHHHHHHHHhheeeEEeecccc
Q 045189 266 KIRIIVGVTVSIGVLIAAAITGLLILRRRKKKE 298 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~~~ 298 (299)
+..+.++.++.++++++++..+++++||.||||
T Consensus 76 ~l~~pi~~sal~v~lVl~llsg~lv~rrcrrr~ 108 (129)
T PF12191_consen 76 PLLWPILGSALSVVLVLALLSGFLVWRRCRRRE 108 (129)
T ss_dssp SSS------------------------------
T ss_pred ceehhhhhhHHHHHHHHHHHHHHHHHhhhhccc
Confidence 344555555555555433333344444444544
No 22
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=72.67 E-value=47 Score=26.49 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=20.9
Q ss_pred ccCCCCeeEEEEEEeCCCCeEEEEEee
Q 045189 176 SFHSEDTADVRIAYNSTTKNLSVSWTY 202 (299)
Q Consensus 176 ~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 202 (299)
.+.+|++|++.|+++. +.+.++++.
T Consensus 76 ~v~dg~Wh~v~i~~~~--~~~~l~VD~ 100 (151)
T cd00110 76 PLNDGQWHSVSVERNG--RSVTLSVDG 100 (151)
T ss_pred ccCCCCEEEEEEEECC--CEEEEEECC
Confidence 4889999999999997 467777765
No 23
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=70.80 E-value=3.4 Score=42.45 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=19.6
Q ss_pred CceeEEEEehhhHHHHHHHHHHhheeeEEeecc
Q 045189 264 GKKIRIIVGVTVSIGVLIAAAITGLLILRRRKK 296 (299)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~~ 296 (299)
....+|++|+.+..+++++++++++++++|++|
T Consensus 266 ~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 266 PNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred CCCeEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 345677788876655555545555555555544
No 24
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=70.34 E-value=3.3 Score=36.07 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=7.3
Q ss_pred EEEEehhhHHHHH
Q 045189 268 RIIVGVTVSIGVL 280 (299)
Q Consensus 268 ~~~~~~~v~~~~~ 280 (299)
.++|+|.++.+++
T Consensus 159 ~laI~lPvvv~~~ 171 (189)
T PF14610_consen 159 ALAIALPVVVVVL 171 (189)
T ss_pred eEEEEccHHHHHH
Confidence 5666666654443
No 25
>smart00282 LamG Laminin G domain.
Probab=65.70 E-value=65 Score=25.43 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=20.7
Q ss_pred cccCCCCeeEEEEEEeCCCCeEEEEEee
Q 045189 175 ASFHSEDTADVRIAYNSTTKNLSVSWTY 202 (299)
Q Consensus 175 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 202 (299)
..+++|++|++.|.++.. .+++.++.
T Consensus 57 ~~~~dg~WH~v~i~~~~~--~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNGR--RVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeCC--EEEEEECC
Confidence 458899999999999864 66667764
No 26
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=64.63 E-value=6.6 Score=33.77 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=9.1
Q ss_pred eeEEEEehhhHHHHHH
Q 045189 266 KIRIIVGVTVSIGVLI 281 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~ 281 (299)
...|+++++++.++++
T Consensus 77 ~~~iivgvi~~Vi~Iv 92 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIV 92 (179)
T ss_pred eeeeeeehhhHHHHHH
Confidence 4556667766544443
No 27
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.56 E-value=1.7 Score=31.27 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=18.9
Q ss_pred ceeEEEEehhhHHHHHHHHHHhhe-eeEE
Q 045189 265 KKIRIIVGVTVSIGVLIAAAITGL-LILR 292 (299)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 292 (299)
-+-++++-++|++.+++++++..+ +.+|
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 344788888888888777766554 4433
No 28
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=62.35 E-value=2.6 Score=30.42 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=0.4
Q ss_pred HhheeeEEeec
Q 045189 285 ITGLLILRRRK 295 (299)
Q Consensus 285 ~~~~~~~~~r~ 295 (299)
.++.++++|-|
T Consensus 27 lLIlf~iyR~r 37 (64)
T PF01034_consen 27 LLILFLIYRMR 37 (64)
T ss_dssp ----------S
T ss_pred HHHHHHHHHHH
Confidence 33444445533
No 29
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=61.79 E-value=4.7 Score=37.80 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=16.6
Q ss_pred EEEEehhhHHHHH-HHHHHhheeeEEeeccc
Q 045189 268 RIIVGVTVSIGVL-IAAAITGLLILRRRKKK 297 (299)
Q Consensus 268 ~~~~~~~v~~~~~-~~~~~~~~~~~~~r~~~ 297 (299)
..+|.++||++++ +++++++.++++|||++
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 5566676665543 33345556666665543
No 30
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=61.70 E-value=2.6 Score=39.44 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCCCCCCcEEEE
Q 045189 149 WDPSGVQDHVGIN 161 (299)
Q Consensus 149 ~Dp~~~~nHVgI~ 161 (299)
+|++. +||-|.
T Consensus 33 GD~nt--s~ItV~ 43 (290)
T PF05454_consen 33 GDRNT--SSITVR 43 (290)
T ss_dssp -------------
T ss_pred CCCCC--CeEEEE
Confidence 46655 566543
No 31
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.88 E-value=6.9 Score=36.51 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=13.4
Q ss_pred eEEEEehhhHHH--HHHHHHHhheeeEEeec
Q 045189 267 IRIIVGVTVSIG--VLIAAAITGLLILRRRK 295 (299)
Q Consensus 267 ~~~~~~~~v~~~--~~~~~~~~~~~~~~~r~ 295 (299)
..+.|++++|.. +|++++++++..++|||
T Consensus 228 ~VVlIslAiALG~v~ll~l~Gii~~~~~r~~ 258 (281)
T PF12768_consen 228 FVVLISLAIALGTVFLLVLIGIILAYIRRRR 258 (281)
T ss_pred EEEEEehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555555533 33433444444444443
No 32
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=53.39 E-value=7.6 Score=34.46 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=12.7
Q ss_pred EEEehhhHH-HHHHHHHHhheeeEEee
Q 045189 269 IIVGVTVSI-GVLIAAAITGLLILRRR 294 (299)
Q Consensus 269 ~~~~~~v~~-~~~~~~~~~~~~~~~~r 294 (299)
+.|++++.+ ++|+++++.+++++|.|
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQR 127 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhh
Confidence 555544444 45555445554555443
No 33
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=53.38 E-value=4.4 Score=40.19 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=4.4
Q ss_pred cceEEEEccCC
Q 045189 99 HGLVFFLAPAG 109 (299)
Q Consensus 99 dGlAF~l~p~~ 109 (299)
+|-.|.+.+..
T Consensus 145 ~~~~~~~~~~~ 155 (439)
T PF02480_consen 145 HGATFHLKNYH 155 (439)
T ss_dssp -SEEEEEE--S
T ss_pred cccEEEEeccc
Confidence 45555555543
No 34
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=52.29 E-value=9.1 Score=30.02 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=2.7
Q ss_pred eeEEeec
Q 045189 289 LILRRRK 295 (299)
Q Consensus 289 ~~~~~r~ 295 (299)
+++.|.|
T Consensus 84 FVILRer 90 (101)
T PF06024_consen 84 FVILRER 90 (101)
T ss_pred EEEEecc
Confidence 3333433
No 35
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=51.81 E-value=8.9 Score=37.51 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=14.8
Q ss_pred CceeEEEEehhhHHHHHHHH
Q 045189 264 GKKIRIIVGVTVSIGVLIAA 283 (299)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~ 283 (299)
+.+++.|+|++|+++++|-.
T Consensus 363 ~LstgaIaGIsvavvvvVgg 382 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVGG 382 (397)
T ss_pred cccccceeeeeehhHHHHHH
Confidence 44678899999987766543
No 36
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=44.09 E-value=67 Score=33.44 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=14.4
Q ss_pred eeEEEEehhhHHHHHHHHHHhheeeEEee
Q 045189 266 KIRIIVGVTVSIGVLIAAAITGLLILRRR 294 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~r 294 (299)
.+.+.+++-++.+++++++++++++.|||
T Consensus 389 ~t~~~~~~f~~if~iva~ii~~~L~R~rr 417 (807)
T KOG1094|consen 389 PTAILIIIFVAIFLIVALIIALMLWRWRR 417 (807)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555544444444443334
No 37
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=41.90 E-value=63 Score=28.29 Aligned_cols=29 Identities=3% Similarity=-0.072 Sum_probs=25.6
Q ss_pred cccCCCCeeEEEEEEeCCCCeEEEEEeec
Q 045189 175 ASFHSEDTADVRIAYNSTTKNLSVSWTYR 203 (299)
Q Consensus 175 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~ 203 (299)
..+.+|++|++-++||+.+.+++++++..
T Consensus 85 ~~~~~g~W~hvc~tw~~~~g~~~lyvnG~ 113 (206)
T smart00159 85 VPESDGKWHHICTTWESSSGIAELWVDGK 113 (206)
T ss_pred ccccCCceEEEEEEEECCCCcEEEEECCE
Confidence 45789999999999999999999999754
No 38
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=39.53 E-value=1.6e+02 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=31.7
Q ss_pred cCCCCeeEEEEEEeCCCCeEEEEEeecCCCCCCCceeEEEEeccCcccCceeEEEEE
Q 045189 177 FHSEDTADVRIAYNSTTKNLSVSWTYRQTSDPRENTSLFYIIDLTKVLPQWVTIGFS 233 (299)
Q Consensus 177 l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~~p~~~~ls~~vdL~~~l~~~vyvGFS 233 (299)
++..+....||.++. ..++|.... ...|+++.. |-. -..--|||||
T Consensus 49 ls~~e~~~fwI~~~~--G~I~vg~~g------~~~pfl~~~-Dp~--~~~v~yvGft 94 (102)
T PF12248_consen 49 LSPSEFRMFWISWRD--GTIRVGRGG------EDEPFLEWT-DPE--PIPVNYVGFT 94 (102)
T ss_pred CCCCccEEEEEEECC--CEEEEEECC------CccEEEEEE-CCC--CCcccEEEEe
Confidence 567788999999775 467776653 136788876 322 3456799994
No 39
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=37.84 E-value=11 Score=35.01 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=0.0
Q ss_pred eEEEEehhhHHHHHHHHHHhheeeE
Q 045189 267 IRIIVGVTVSIGVLIAAAITGLLIL 291 (299)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~~~ 291 (299)
-+++.-|.|..+++|++....++|+
T Consensus 224 p~~vf~lLVPSiILVLLaVGGLLfY 248 (285)
T PF05337_consen 224 PGFVFYLLVPSIILVLLAVGGLLFY 248 (285)
T ss_dssp -------------------------
T ss_pred Ccccccccccchhhhhhhccceeee
Confidence 3566777777777765433334444
No 40
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=37.32 E-value=29 Score=28.62 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=9.9
Q ss_pred cCCcccceEEEEEE
Q 045189 236 TSQFGERHILESWE 249 (299)
Q Consensus 236 TG~~~~~h~IlsWs 249 (299)
||...|.-.+.+|+
T Consensus 76 tGeRCEh~dLl~~~ 89 (139)
T PHA03099 76 TGIRCQHVVLVDYQ 89 (139)
T ss_pred ccccccceeeeeee
Confidence 36677777777776
No 41
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.89 E-value=11 Score=30.34 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=1.4
Q ss_pred EehhhHHHHHHHHHHhheeeEEe
Q 045189 271 VGVTVSIGVLIAAAITGLLILRR 293 (299)
Q Consensus 271 ~~~~v~~~~~~~~~~~~~~~~~~ 293 (299)
+|+.+-.++|.+++.+.||+.+|
T Consensus 27 aGIGiL~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKR 49 (118)
T ss_dssp -SSS-------------------
T ss_pred ccceeHHHHHHHHHHHhheeeee
Confidence 34444444444434444444333
No 42
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=36.26 E-value=11 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=0.7
Q ss_pred EEEEehhhHHHHHHHHHHhheeeEEee
Q 045189 268 RIIVGVTVSIGVLIAAAITGLLILRRR 294 (299)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~~~~~~~~r 294 (299)
.+++|.+++.+++++++.++++-++||
T Consensus 13 avIaG~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp ------------------------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566677777776677777777766665
No 43
>PLN03150 hypothetical protein; Provisional
Probab=35.14 E-value=24 Score=36.49 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=6.3
Q ss_pred EEEEehhhHHHHH
Q 045189 268 RIIVGVTVSIGVL 280 (299)
Q Consensus 268 ~~~~~~~v~~~~~ 280 (299)
.++++++++++++
T Consensus 544 ~~~i~~~~~~~~~ 556 (623)
T PLN03150 544 GAKIGIAFGVSVA 556 (623)
T ss_pred ceEEEEEhHHHHH
Confidence 4455555554443
No 44
>PF15345 TMEM51: Transmembrane protein 51
Probab=35.03 E-value=18 Score=32.76 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=11.8
Q ss_pred eeEEEEehhhHHHHHHHHHHhheeeEE
Q 045189 266 KIRIIVGVTVSIGVLIAAAITGLLILR 292 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~ 292 (299)
++.+.|+.++.++-+++++..+|+.+|
T Consensus 55 sKt~SVAyVLVG~Gv~LLLLSICL~IR 81 (233)
T PF15345_consen 55 SKTFSVAYVLVGSGVALLLLSICLSIR 81 (233)
T ss_pred ceeEEEEEehhhHHHHHHHHHHHHHHH
Confidence 344445433333323333455566654
No 45
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=33.34 E-value=18 Score=29.58 Aligned_cols=7 Identities=43% Similarity=0.487 Sum_probs=3.7
Q ss_pred EEeecCC
Q 045189 232 FSAATSQ 238 (299)
Q Consensus 232 FSAsTG~ 238 (299)
.+++||+
T Consensus 37 lt~atgg 43 (129)
T PF15099_consen 37 LTAATGG 43 (129)
T ss_pred HhccCCC
Confidence 3456554
No 46
>PTZ00046 rifin; Provisional
Probab=33.19 E-value=15 Score=35.37 Aligned_cols=9 Identities=56% Similarity=0.711 Sum_probs=4.7
Q ss_pred CcceEEEEcc
Q 045189 98 GHGLVFFLAP 107 (299)
Q Consensus 98 gdGlAF~l~p 107 (299)
|-||. -++|
T Consensus 144 G~~LG-gVaP 152 (358)
T PTZ00046 144 GCGLG-GVAP 152 (358)
T ss_pred CCccc-cccc
Confidence 55665 4444
No 47
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=31.34 E-value=18 Score=25.75 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=6.7
Q ss_pred HhheeeEEeecccc
Q 045189 285 ITGLLILRRRKKKE 298 (299)
Q Consensus 285 ~~~~~~~~~r~~~~ 298 (299)
+++++.+|++||++
T Consensus 24 avi~~ayr~~~K~~ 37 (60)
T COG4736 24 AVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHhcccchhh
Confidence 44444445555554
No 48
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=31.31 E-value=16 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred CceeEEEEehhhHHHHHHHHHHhheeeEEeec
Q 045189 264 GKKIRIIVGVTVSIGVLIAAAITGLLILRRRK 295 (299)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~ 295 (299)
+..+.-++|+.|+.++.+.+++.+++++.|||
T Consensus 125 GL~T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 125 GLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp --------------------------------
T ss_pred CcceeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 33445556666665544444444444444554
No 49
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=29.60 E-value=38 Score=32.90 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=9.0
Q ss_pred HHHhheeeEEeecc
Q 045189 283 AAITGLLILRRRKK 296 (299)
Q Consensus 283 ~~~~~~~~~~~r~~ 296 (299)
+++++++++|||||
T Consensus 360 llg~~~~~~~rk~k 373 (374)
T TIGR03503 360 LLGGIGFFVWRKKK 373 (374)
T ss_pred hhheeeEEEEEEee
Confidence 45666666677765
No 50
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=27.80 E-value=50 Score=24.52 Aligned_cols=19 Identities=16% Similarity=0.245 Sum_probs=9.6
Q ss_pred EEehhhHHHHHHHHHHhhe
Q 045189 270 IVGVTVSIGVLIAAAITGL 288 (299)
Q Consensus 270 ~~~~~v~~~~~~~~~~~~~ 288 (299)
++.+.|..++++|+++++.
T Consensus 31 avaVviPl~L~LCiLvl~y 49 (74)
T PF11857_consen 31 AVAVVIPLVLLLCILVLIY 49 (74)
T ss_pred EEEEeHHHHHHHHHHHHHH
Confidence 3444445555555555554
No 51
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=26.49 E-value=65 Score=28.91 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=19.5
Q ss_pred ccCCCCeeEEEEEEeCCCCeEEEEEe
Q 045189 176 SFHSEDTADVRIAYNSTTKNLSVSWT 201 (299)
Q Consensus 176 ~l~~G~~~~v~I~Yd~~~~~L~V~l~ 201 (299)
...+|+..+.-|++|...+ +|++-
T Consensus 79 ~Tk~gn~FyliIDr~~~~e--nV~fL 102 (218)
T PF14283_consen 79 TTKSGNTFYLIIDRDEEGE--NVYFL 102 (218)
T ss_pred EecCCCEEEEEEecCCCcc--eEEEe
Confidence 4578999999999999877 56664
No 52
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.10 E-value=30 Score=26.17 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=9.2
Q ss_pred ehhhHHHHHHHHHHhheeeEEe
Q 045189 272 GVTVSIGVLIAAAITGLLILRR 293 (299)
Q Consensus 272 ~~~v~~~~~~~~~~~~~~~~~~ 293 (299)
+++|+.++.+++...++.-++|
T Consensus 11 aliv~~iiaIvvW~iv~ieYrk 32 (81)
T PF00558_consen 11 ALIVALIIAIVVWTIVYIEYRK 32 (81)
T ss_dssp HHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666655433
No 53
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=25.99 E-value=90 Score=27.11 Aligned_cols=27 Identities=7% Similarity=-0.029 Sum_probs=24.5
Q ss_pred cCCCCeeEEEEEEeCCCCeEEEEEeec
Q 045189 177 FHSEDTADVRIAYNSTTKNLSVSWTYR 203 (299)
Q Consensus 177 l~~G~~~~v~I~Yd~~~~~L~V~l~~~ 203 (299)
..+|++|++-++||+.+.+++++++..
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG~ 113 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNGK 113 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECCE
Confidence 479999999999999999999999764
No 54
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=25.74 E-value=98 Score=24.81 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=21.6
Q ss_pred CCeeEEEEEEeCCCCeEEEEEeec
Q 045189 180 EDTADVRIAYNSTTKNLSVSWTYR 203 (299)
Q Consensus 180 G~~~~v~I~Yd~~~~~L~V~l~~~ 203 (299)
|+.+++.+.||+..+.++++++..
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG~ 84 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNGV 84 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECCE
Confidence 889999999999889999999754
No 55
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=25.22 E-value=39 Score=25.80 Aligned_cols=30 Identities=27% Similarity=0.161 Sum_probs=12.1
Q ss_pred eeEEEEehhhHHHHHHHHHHhheeeEEeec
Q 045189 266 KIRIIVGVTVSIGVLIAAAITGLLILRRRK 295 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~ 295 (299)
++.+++....+++++++..++++.++.+|+
T Consensus 49 kK~i~iS~ias~la~lv~t~~G~g~y~~~k 78 (85)
T TIGR01495 49 KKIILYSSIASGLALLVGAGVGLGYYYKKK 78 (85)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 344444433334444333344433333333
No 56
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=24.93 E-value=24 Score=35.03 Aligned_cols=7 Identities=29% Similarity=1.293 Sum_probs=3.3
Q ss_pred EEEEEEE
Q 045189 245 LESWEFS 251 (299)
Q Consensus 245 IlsWsF~ 251 (299)
+..|...
T Consensus 294 v~aW~yt 300 (439)
T PF02480_consen 294 VEAWTYT 300 (439)
T ss_dssp EEEEEEE
T ss_pred eeeeEEE
Confidence 3455443
No 57
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=24.25 E-value=19 Score=29.07 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=16.1
Q ss_pred eEEEEehhhHHHHHHHHHHhhee
Q 045189 267 IRIIVGVTVSIGVLIAAAITGLL 289 (299)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~~~~ 289 (299)
...+++++|++.+.+++.++...
T Consensus 82 ~d~aLp~VIGGLcaL~LaamGA~ 104 (126)
T PF03229_consen 82 VDFALPLVIGGLCALTLAAMGAG 104 (126)
T ss_pred cccchhhhhhHHHHHHHHHHHHH
Confidence 45778899998877766555543
No 58
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=22.92 E-value=32 Score=33.68 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=13.5
Q ss_pred eeEEEEehhhHHHHHHHHHHhheeeEEeec
Q 045189 266 KIRIIVGVTVSIGVLIAAAITGLLILRRRK 295 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~r~ 295 (299)
...++..+.|..++|++..++++++++|||
T Consensus 385 ~~~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 385 TAMIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 334555555555555433333334444443
No 59
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=22.69 E-value=28 Score=31.14 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=7.9
Q ss_pred eeEEEEehhhHHHHHH
Q 045189 266 KIRIIVGVTVSIGVLI 281 (299)
Q Consensus 266 ~~~~~~~~~v~~~~~~ 281 (299)
...+++|++.|+++++
T Consensus 36 ~~~I~iaiVAG~~tVI 51 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVI 51 (221)
T ss_pred ceeeeeeeecchhhhH
Confidence 3455566554444333
No 60
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.93 E-value=25 Score=33.15 Aligned_cols=17 Identities=47% Similarity=0.413 Sum_probs=9.0
Q ss_pred HHHHHHHHHhheeeEEe
Q 045189 277 IGVLIAAAITGLLILRR 293 (299)
Q Consensus 277 ~~~~~~~~~~~~~~~~~ 293 (299)
.+||+++++-.++-+||
T Consensus 267 iIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555565555555443
No 61
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.96 E-value=32 Score=32.25 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=0.0
Q ss_pred heeeEEeeccc
Q 045189 287 GLLILRRRKKK 297 (299)
Q Consensus 287 ~~~~~~~r~~~ 297 (299)
+|+|+ |||||
T Consensus 166 a~icy-rrkR~ 175 (290)
T PF05454_consen 166 ACICY-RRKRK 175 (290)
T ss_dssp -----------
T ss_pred HHHhh-hhhhc
Confidence 34443 44443
No 62
>PF13619 KTSC: KTSC domain
Probab=20.22 E-value=1.2e+02 Score=21.11 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=15.8
Q ss_pred EEEEEeCCCCeEEEEEee
Q 045189 185 VRIAYNSTTKNLSVSWTY 202 (299)
Q Consensus 185 v~I~Yd~~~~~L~V~l~~ 202 (299)
..|.||..++.|+|.+..
T Consensus 7 ~~v~Yd~~~~~L~V~F~~ 24 (60)
T PF13619_consen 7 RSVGYDPETRTLEVEFKS 24 (60)
T ss_pred cEEeECCCCCEEEEEEcC
Confidence 569999999999999964
Done!