Query 045191
Match_columns 135
No_of_seqs 134 out of 1329
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045191.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045191hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01486 K-box: K-box region; 99.9 2.2E-23 4.7E-28 143.9 10.7 85 1-85 16-100 (100)
2 PF06005 DUF904: Protein of un 95.6 0.24 5.1E-06 32.3 8.9 50 31-85 1-50 (72)
3 KOG0014 MADS box transcription 95.4 0.0031 6.8E-08 47.2 -0.6 70 2-71 112-186 (195)
4 PF06156 DUF972: Protein of un 92.2 1.6 3.6E-05 30.4 8.1 51 33-88 7-57 (107)
5 COG3074 Uncharacterized protei 90.6 3.3 7.2E-05 27.0 8.0 53 31-88 1-53 (79)
6 PRK15422 septal ring assembly 89.2 4.8 0.0001 26.7 8.6 43 31-78 1-43 (79)
7 smart00787 Spc7 Spc7 kinetocho 85.6 18 0.00038 29.7 10.8 81 8-88 176-260 (312)
8 PF06698 DUF1192: Protein of u 84.9 1.7 3.8E-05 27.2 3.6 17 22-38 12-28 (59)
9 PRK13169 DNA replication intia 84.7 10 0.00022 26.6 7.8 49 33-86 7-55 (110)
10 PF08317 Spc7: Spc7 kinetochor 84.2 21 0.00046 29.1 12.2 80 10-89 183-266 (325)
11 PF01166 TSC22: TSC-22/dip/bun 84.2 3.1 6.8E-05 26.0 4.5 27 56-82 17-43 (59)
12 cd07429 Cby_like Chibby, a nuc 83.1 2.4 5.3E-05 29.7 4.1 26 60-85 72-97 (108)
13 COG2433 Uncharacterized conser 82.1 34 0.00074 30.9 11.6 73 6-87 431-508 (652)
14 KOG4797 Transcriptional regula 81.4 9 0.00019 27.0 6.4 46 38-83 45-90 (123)
15 PF13758 Prefoldin_3: Prefoldi 81.1 4.6 9.9E-05 27.9 4.8 16 1-16 9-24 (99)
16 PRK10884 SH3 domain-containing 79.7 26 0.00057 27.1 11.0 73 5-87 94-166 (206)
17 PF07106 TBPIP: Tat binding pr 78.1 15 0.00033 27.0 7.2 47 7-54 119-165 (169)
18 PF00170 bZIP_1: bZIP transcri 77.9 14 0.0003 22.8 6.6 38 46-87 16-53 (64)
19 TIGR02894 DNA_bind_RsfA transc 76.4 30 0.00065 25.9 12.1 60 28-87 77-138 (161)
20 smart00338 BRLZ basic region l 74.4 18 0.00038 22.3 6.8 40 45-88 15-54 (65)
21 PF07716 bZIP_2: Basic region 71.6 19 0.00041 21.5 6.6 39 45-87 14-52 (54)
22 TIGR02338 gimC_beta prefoldin, 71.6 22 0.00048 24.3 6.3 77 5-82 11-103 (110)
23 KOG0804 Cytoplasmic Zn-finger 70.5 63 0.0014 28.2 9.8 50 33-82 360-411 (493)
24 PF10504 DUF2452: Protein of u 69.6 39 0.00084 25.3 7.5 43 32-74 28-73 (159)
25 PRK00888 ftsB cell division pr 69.4 21 0.00045 24.6 5.7 35 54-88 28-62 (105)
26 PF04977 DivIC: Septum formati 68.4 23 0.0005 22.1 5.5 32 56-87 20-51 (80)
27 PF06156 DUF972: Protein of un 67.6 28 0.0006 24.2 6.0 35 54-88 16-50 (107)
28 PF15254 CCDC14: Coiled-coil d 66.0 88 0.0019 29.2 10.2 77 4-85 394-480 (861)
29 KOG1962 B-cell receptor-associ 65.4 58 0.0012 25.6 8.0 53 31-83 155-209 (216)
30 PRK10884 SH3 domain-containing 62.3 71 0.0015 24.7 8.6 27 60-86 125-151 (206)
31 KOG4797 Transcriptional regula 61.9 18 0.0004 25.5 4.2 33 50-83 65-97 (123)
32 PRK11637 AmiB activator; Provi 61.8 97 0.0021 26.1 10.7 51 33-83 74-126 (428)
33 PF05529 Bap31: B-cell recepto 61.1 66 0.0014 24.0 8.3 54 34-87 125-188 (192)
34 TIGR02449 conserved hypothetic 61.0 40 0.00087 21.4 7.9 45 35-84 1-45 (65)
35 PF06005 DUF904: Protein of un 56.4 52 0.0011 21.2 6.6 37 52-88 10-46 (72)
36 PF15397 DUF4618: Domain of un 55.7 1.1E+02 0.0023 24.7 9.0 83 6-89 122-222 (258)
37 PF14645 Chibby: Chibby family 55.0 25 0.00053 24.8 4.0 25 60-84 71-95 (116)
38 smart00340 HALZ homeobox assoc 55.0 40 0.00087 19.8 4.2 26 63-88 8-33 (44)
39 COG4467 Regulator of replicati 54.1 75 0.0016 22.4 6.5 48 33-85 7-54 (114)
40 PF03980 Nnf1: Nnf1 ; InterPr 53.9 61 0.0013 21.9 5.8 38 50-87 70-107 (109)
41 smart00030 CLb CLUSTERIN Beta 52.3 92 0.002 24.3 7.0 30 26-55 7-36 (206)
42 PF02151 UVR: UvrB/uvrC motif; 51.9 39 0.00085 18.5 4.3 33 35-67 3-35 (36)
43 PF09789 DUF2353: Uncharacteri 50.6 1.5E+02 0.0032 24.7 9.9 77 7-88 33-114 (319)
44 PF10498 IFT57: Intra-flagella 50.1 1.5E+02 0.0033 24.8 11.0 71 2-82 218-288 (359)
45 PRK13729 conjugal transfer pil 50.1 85 0.0018 27.5 7.2 30 56-85 93-122 (475)
46 PRK13169 DNA replication intia 49.9 86 0.0019 21.9 6.1 35 54-88 16-50 (110)
47 PF01093 Clusterin: Clusterin; 48.2 91 0.002 27.0 7.1 29 26-54 1-29 (436)
48 PRK09039 hypothetical protein; 47.3 1.6E+02 0.0035 24.3 10.6 36 4-55 137-172 (343)
49 PF04849 HAP1_N: HAP1 N-termin 44.9 44 0.00094 27.6 4.5 54 34-87 97-187 (306)
50 PF07558 Shugoshin_N: Shugoshi 44.4 35 0.00075 20.0 2.9 31 53-83 14-44 (46)
51 TIGR02209 ftsL_broad cell divi 43.5 85 0.0018 19.9 5.3 34 55-88 26-59 (85)
52 PF14193 DUF4315: Domain of un 43.0 98 0.0021 20.5 5.5 43 54-96 2-44 (83)
53 PF14282 FlxA: FlxA-like prote 42.8 1.1E+02 0.0023 20.9 8.3 55 4-75 19-73 (106)
54 KOG2417 Predicted G-protein co 41.2 2.3E+02 0.005 24.3 8.9 30 33-62 185-214 (462)
55 PF10018 Med4: Vitamin-D-recep 41.1 1.5E+02 0.0033 22.2 9.0 53 33-87 4-56 (188)
56 PF11365 DUF3166: Protein of u 40.9 86 0.0019 21.5 4.8 34 55-88 10-43 (96)
57 PF15243 ANAPC15: Anaphase-pro 40.4 37 0.0008 23.1 2.9 22 34-55 28-49 (92)
58 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.2 1.4E+02 0.0031 21.0 10.9 30 56-85 101-130 (132)
59 smart00338 BRLZ basic region l 38.0 95 0.0021 18.9 5.2 29 55-83 35-63 (65)
60 KOG0971 Microtubule-associated 38.0 3.8E+02 0.0083 25.9 12.1 85 3-88 331-431 (1243)
61 PF04999 FtsL: Cell division p 37.8 1.2E+02 0.0026 19.9 5.3 35 54-88 36-70 (97)
62 TIGR01950 SoxR redox-sensitive 37.0 1.5E+02 0.0032 21.3 5.9 54 30-83 57-110 (142)
63 PF09798 LCD1: DNA damage chec 37.0 2.7E+02 0.0059 25.4 8.6 55 34-88 4-61 (654)
64 PF04880 NUDE_C: NUDE protein, 36.8 81 0.0018 23.7 4.6 43 36-83 2-47 (166)
65 PF07407 Seadorna_VP6: Seadorn 36.5 1.6E+02 0.0034 25.0 6.5 35 26-72 24-58 (420)
66 PF12537 DUF3735: Protein of u 35.8 72 0.0016 20.3 3.6 25 33-57 47-71 (72)
67 cd04787 HTH_HMRTR_unk Helix-Tu 35.6 1.6E+02 0.0034 20.7 7.4 55 30-85 57-111 (133)
68 PF12718 Tropomyosin_1: Tropom 34.9 1.7E+02 0.0038 21.0 8.2 19 36-54 44-62 (143)
69 PF12548 DUF3740: Sulfatase pr 34.8 74 0.0016 23.3 4.0 27 57-83 110-136 (145)
70 KOG3119 Basic region leucine z 34.8 1.4E+02 0.0031 23.8 6.0 41 44-88 203-243 (269)
71 PF07889 DUF1664: Protein of u 34.7 1.7E+02 0.0037 20.9 7.9 50 38-88 47-96 (126)
72 PF07888 CALCOCO1: Calcium bin 33.9 3.5E+02 0.0075 24.2 11.2 18 5-22 165-182 (546)
73 PF05700 BCAS2: Breast carcino 33.5 2E+02 0.0043 22.2 6.5 27 25-51 130-156 (221)
74 COG4467 Regulator of replicati 33.4 1.4E+02 0.003 21.1 4.9 32 57-88 19-50 (114)
75 PRK11637 AmiB activator; Provi 32.9 3E+02 0.0065 23.2 11.7 54 35-88 69-124 (428)
76 PF15058 Speriolin_N: Sperioli 32.7 1.2E+02 0.0027 23.4 5.0 34 54-88 13-46 (200)
77 cd08888 SRPBCC_PITPNA-B_like L 32.4 57 0.0012 26.3 3.3 39 14-52 218-258 (258)
78 cd01109 HTH_YyaN Helix-Turn-He 32.4 1.6E+02 0.0035 19.9 6.9 53 30-83 57-109 (113)
79 PF09278 MerR-DNA-bind: MerR, 32.3 1.1E+02 0.0025 18.2 5.6 46 30-76 14-59 (65)
80 TIGR00012 L29 ribosomal protei 31.6 91 0.002 18.7 3.4 28 27-54 1-28 (55)
81 PF12252 SidE: Dot/Icm substra 31.4 3.5E+02 0.0077 26.6 8.5 62 5-67 1132-1193(1439)
82 KOG0930 Guanine nucleotide exc 31.2 1.2E+02 0.0027 25.2 5.0 40 28-76 8-47 (395)
83 KOG0946 ER-Golgi vesicle-tethe 31.2 4.7E+02 0.01 24.9 9.5 79 3-86 617-697 (970)
84 KOG0709 CREB/ATF family transc 31.0 1.1E+02 0.0025 26.7 5.1 58 30-87 233-313 (472)
85 PF04728 LPP: Lipoprotein leuc 30.7 1.4E+02 0.0029 18.5 6.1 35 53-87 3-37 (56)
86 cd04769 HTH_MerR2 Helix-Turn-H 30.1 1.8E+02 0.0039 19.8 6.1 54 30-83 56-109 (116)
87 TIGR03185 DNA_S_dndD DNA sulfu 29.7 4.1E+02 0.0089 23.7 11.9 38 7-51 401-438 (650)
88 PF11629 Mst1_SARAH: C termina 29.3 88 0.0019 18.8 3.0 11 28-38 5-15 (49)
89 PRK09343 prefoldin subunit bet 29.1 2E+02 0.0044 20.0 8.8 58 30-87 41-105 (121)
90 PF15070 GOLGA2L5: Putative go 29.0 2.4E+02 0.0052 25.5 7.0 25 56-80 163-187 (617)
91 PF15619 Lebercilin: Ciliary p 27.9 2E+02 0.0044 21.9 5.6 37 48-84 7-43 (194)
92 PF06937 EURL: EURL protein; 27.8 82 0.0018 25.7 3.5 38 16-53 204-241 (285)
93 PF10186 Atg14: UV radiation r 27.7 2.9E+02 0.0062 21.3 10.6 22 4-25 27-48 (302)
94 PRK13923 putative spore coat p 27.0 2.8E+02 0.0061 20.9 9.2 25 59-83 110-134 (170)
95 PLN02372 violaxanthin de-epoxi 26.9 4.3E+02 0.0092 23.0 8.3 28 33-60 378-405 (455)
96 PTZ00108 DNA topoisomerase 2-l 26.7 1.2E+02 0.0027 30.0 5.0 45 4-48 1102-1146(1388)
97 PF09726 Macoilin: Transmembra 26.5 5.1E+02 0.011 23.8 12.2 14 55-68 589-602 (697)
98 PF14357 DUF4404: Domain of un 26.3 1.1E+02 0.0024 20.2 3.4 40 8-49 1-40 (85)
99 PF02183 HALZ: Homeobox associ 26.3 1.4E+02 0.0031 17.3 6.0 35 54-88 6-40 (45)
100 PHA02109 hypothetical protein 25.8 1.6E+02 0.0034 22.8 4.5 41 21-73 178-220 (233)
101 PF07498 Rho_N: Rho terminatio 25.6 16 0.00035 20.9 -0.6 33 27-60 1-33 (43)
102 KOG3759 Uncharacterized RUN do 25.3 4.9E+02 0.011 23.2 9.2 45 26-73 197-247 (621)
103 cd01282 HTH_MerR-like_sg3 Heli 25.0 2.3E+02 0.0049 19.2 5.9 51 30-81 56-109 (112)
104 PF03250 Tropomodulin: Tropomo 24.9 46 0.00099 24.6 1.4 18 28-45 21-38 (147)
105 PF08687 ASD2: Apx/Shroom doma 24.9 2.8E+02 0.006 22.4 6.0 45 40-88 77-121 (264)
106 PF08988 DUF1895: Protein of u 24.9 1.9E+02 0.0042 18.4 4.9 49 2-50 12-60 (68)
107 PRK09413 IS2 repressor TnpA; R 24.6 2.4E+02 0.0052 19.4 5.3 28 57-84 75-102 (121)
108 PRK14127 cell division protein 24.6 2.5E+02 0.0054 19.6 5.4 28 61-88 38-65 (109)
109 COG1382 GimC Prefoldin, chaper 24.5 2.6E+02 0.0057 19.8 5.8 27 57-83 81-107 (119)
110 KOG0837 Transcriptional activa 24.5 3.9E+02 0.0085 21.8 6.9 53 30-86 198-253 (279)
111 TIGR02043 ZntR Zn(II)-responsi 24.0 2.6E+02 0.0056 19.5 5.8 53 30-83 58-111 (131)
112 PF12329 TMF_DNA_bd: TATA elem 23.8 2.1E+02 0.0045 18.3 5.7 25 59-83 32-56 (74)
113 TIGR02449 conserved hypothetic 23.6 2E+02 0.0044 18.2 5.5 32 57-88 4-35 (65)
114 PF10226 DUF2216: Uncharacteri 23.3 1.9E+02 0.0042 22.3 4.6 31 53-83 48-78 (195)
115 TIGR03545 conserved hypothetic 23.3 5.4E+02 0.012 22.9 8.4 51 2-54 180-232 (555)
116 PLN02320 seryl-tRNA synthetase 23.1 5.3E+02 0.011 22.8 11.2 47 7-57 70-119 (502)
117 cd04790 HTH_Cfa-like_unk Helix 22.2 3.3E+02 0.0071 20.1 5.8 47 30-83 58-104 (172)
118 cd04776 HTH_GnyR Helix-Turn-He 22.1 2.7E+02 0.0059 19.1 7.7 56 30-85 55-112 (118)
119 PF05557 MAD: Mitotic checkpoi 22.0 6E+02 0.013 23.1 9.8 23 4-26 566-588 (722)
120 PF00831 Ribosomal_L29: Riboso 21.6 67 0.0015 19.5 1.5 27 28-54 4-30 (58)
121 PF11460 DUF3007: Protein of u 21.2 55 0.0012 22.8 1.2 19 26-44 85-103 (104)
122 cd01108 HTH_CueR Helix-Turn-He 21.2 2.9E+02 0.0063 19.1 6.9 53 30-83 57-109 (127)
123 TIGR03752 conj_TIGR03752 integ 21.1 5.7E+02 0.012 22.5 10.0 68 4-84 73-140 (472)
124 PHA01750 hypothetical protein 20.9 2.4E+02 0.0053 18.1 6.7 37 44-80 33-69 (75)
125 PF04697 Pinin_SDK_N: pinin/SD 20.9 1.4E+02 0.0031 21.6 3.3 32 2-33 8-39 (134)
126 KOG4643 Uncharacterized coiled 20.8 5.4E+02 0.012 25.1 7.7 28 59-86 300-327 (1195)
127 PF09755 DUF2046: Uncharacteri 20.7 4E+02 0.0087 22.1 6.3 27 55-81 36-62 (310)
128 PF08946 Osmo_CC: Osmosensory 20.5 2E+02 0.0044 17.0 4.1 22 54-75 20-41 (46)
129 PRK15002 redox-sensitivie tran 20.3 3.5E+02 0.0077 19.7 6.2 54 30-83 67-120 (154)
130 PF07544 Med9: RNA polymerase 20.0 2.6E+02 0.0057 18.1 5.7 22 4-25 28-49 (83)
No 1
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.90 E-value=2.2e-23 Score=143.90 Aligned_cols=85 Identities=52% Similarity=0.723 Sum_probs=82.2
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLR 80 (135)
Q Consensus 1 ~w~~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~ 80 (135)
.|..++++|+.+++.|+..+|+++|+||++||++||.+||++|+.|+.+||+||+++|+++|+.+++|++.+.++|..|+
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~ 95 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLR 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 045191 81 SKIAE 85 (135)
Q Consensus 81 ~~~~~ 85 (135)
.++++
T Consensus 96 ~~~~e 100 (100)
T PF01486_consen 96 QKIEE 100 (100)
T ss_pred HHhcC
Confidence 98853
No 2
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.63 E-value=0.24 Score=32.25 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
||++-|.+||..+..++..|. ++..+++.|+.+...+.++|..|..+...
T Consensus 1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 688999999999999999985 46666777877766666666666655543
No 3
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=95.42 E-value=0.0031 Score=47.24 Aligned_cols=70 Identities=30% Similarity=0.372 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHH---HHhhhhcCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 045191 2 YQQESAKLRQQIQMLQ---NSNRHLMGDSLSSLTV-KELKQLENRLERGITRIRSKKHEMLLAEIE-FLQKREIE 71 (135)
Q Consensus 2 w~~e~~~L~~~~~~L~---~~~R~l~GedL~~Ls~-~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~-~l~kk~~~ 71 (135)
|......+....+.+. ...++++|+++.++++ .+|..+|.+++.++..+|..+...+..++. .++.+...
T Consensus 112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (195)
T KOG0014|consen 112 KKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKS 186 (195)
T ss_pred hhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchh
Confidence 3445556666666665 4499999999999999 999999999999999999999999888775 44444333
No 4
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.21 E-value=1.6 Score=30.39 Aligned_cols=51 Identities=25% Similarity=0.407 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 33 VKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
++.+.+||++|..-+..|..-|.+ +..+-..-..|.-||..|+..+.+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888887777766654433 344445555566677777777765543
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.64 E-value=3.3 Score=26.97 Aligned_cols=53 Identities=25% Similarity=0.424 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
||++=+..||..+..|+.-| .++.-+|+.|+.|...|..+-..++...++..+
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 68888999999999999887 678888999988887777666665555544433
No 6
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.16 E-value=4.8 Score=26.67 Aligned_cols=43 Identities=26% Similarity=0.443 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVC 78 (135)
Q Consensus 31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~ 78 (135)
||++=|.+||..+..|+.-| .++..+|+.|+.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999988 56777888888887776666554
No 7
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.64 E-value=18 Score=29.74 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 8 KLRQQIQMLQNSNRHLMG--DSLSSLTVKELKQLENRLERGITRIRSKKHEM--LLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 8 ~L~~~~~~L~~~~R~l~G--edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~l--l~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.++...+.|+.+.+++.- ++++.++..+|..+-..|..-...|..++.++ +..+...+..++....+....+...|
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666553 67889999999999999999888888777664 46677777777777777777888888
Q ss_pred HHHhH
Q 045191 84 AEMER 88 (135)
Q Consensus 84 ~~~~~ 88 (135)
.+.+.
T Consensus 256 ~~ae~ 260 (312)
T smart00787 256 AEAEK 260 (312)
T ss_pred HHHHH
Confidence 77766
No 8
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=84.88 E-value=1.7 Score=27.22 Aligned_cols=17 Identities=47% Similarity=0.788 Sum_probs=15.3
Q ss_pred hhcCCCCCCCCHHHHHH
Q 045191 22 HLMGDSLSSLTVKELKQ 38 (135)
Q Consensus 22 ~l~GedL~~Ls~~EL~~ 38 (135)
+..|+||+.||+.||..
T Consensus 12 ~~ig~dLs~lSv~EL~~ 28 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEE 28 (59)
T ss_pred cccCCCchhcCHHHHHH
Confidence 67899999999999975
No 9
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=84.71 E-value=10 Score=26.61 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 33 VKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
++-+.+||+++..-+..|..-|.+ +..+-.....|.-||..|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999998888777665544 3455556666777888888888764
No 10
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.20 E-value=21 Score=29.12 Aligned_cols=80 Identities=30% Similarity=0.394 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 10 RQQIQMLQNSNRHLMG--DSLSSLTVKELKQLENRLERGITRIRSKKHEM--LLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 10 ~~~~~~L~~~~R~l~G--edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~l--l~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
......|..+++.+.. .+++.++..+|..+-..|...-..|..+|..+ +..+...++.++..+.++...+...|.+
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555444432 45889999999999999999888888877764 4677778888888888888888888877
Q ss_pred HhHh
Q 045191 86 MERF 89 (135)
Q Consensus 86 ~~~~ 89 (135)
.+..
T Consensus 263 ~~~~ 266 (325)
T PF08317_consen 263 AEKI 266 (325)
T ss_pred HHHH
Confidence 6653
No 11
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=84.20 E-value=3.1 Score=26.02 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSK 82 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~ 82 (135)
+.+.++|.+|..+...|+.+|..|+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777777777777777777643
No 12
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=83.11 E-value=2.4 Score=29.71 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 60 AEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 60 ~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
..+..+++|...|+|||+.|+.+++-
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999854
No 13
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.14 E-value=34 Score=30.87 Aligned_cols=73 Identities=26% Similarity=0.302 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 6 SAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRS-----KKHEMLLAEIEFLQKREIELENESVCLR 80 (135)
Q Consensus 6 ~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~-----rK~~ll~~qi~~l~kk~~~l~een~~L~ 80 (135)
+++|..++..|+..+-.+- +++..||..|+..-.+++. |+.+.+...|..|+++..+-...-..|.
T Consensus 431 ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 431 VERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444 7888999999888777763 4566778888888888766666666666
Q ss_pred HHHHHHh
Q 045191 81 SKIAEME 87 (135)
Q Consensus 81 ~~~~~~~ 87 (135)
.++....
T Consensus 502 ~~l~~l~ 508 (652)
T COG2433 502 RKLAELR 508 (652)
T ss_pred HHHHHHH
Confidence 6665544
No 14
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=81.44 E-value=9 Score=27.04 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 38 QLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 38 ~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.+.+.+|.|+.-|.+.-+=-..++++.|+.+++.|.+.|..|..+-
T Consensus 45 aIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 45 AIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888877554333336777777777777777777766543
No 15
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=81.10 E-value=4.6 Score=27.92 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=14.5
Q ss_pred CcHHHHHHHHHHHHHH
Q 045191 1 YYQQESAKLRQQIQML 16 (135)
Q Consensus 1 ~w~~e~~~L~~~~~~L 16 (135)
.|.+||+.|++++..|
T Consensus 9 ~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 9 TWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3999999999999887
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.72 E-value=26 Score=27.08 Aligned_cols=73 Identities=11% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 5 ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 5 e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
.+..++++++.++..+..+.++ .-.....+.+.+..+-..|- -+.++...|+++...+..++..|..++.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~-----~~~~~~~l~~~~~~~~~~~~-----~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNT-----WNQRTAEMQQKVAQSDSVIN-----GLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777776666665533 11344444444444333332 1333444444444444444444444443
Q ss_pred HHh
Q 045191 85 EME 87 (135)
Q Consensus 85 ~~~ 87 (135)
...
T Consensus 164 ~~~ 166 (206)
T PRK10884 164 DKQ 166 (206)
T ss_pred HHH
Confidence 333
No 17
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.05 E-value=15 Score=26.97 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045191 7 AKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKK 54 (135)
Q Consensus 7 ~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK 54 (135)
..|..++..|+..+..+.+ +-...|.+|...++.....+.+..|.||
T Consensus 119 ~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 3333555555555555555555444444
No 18
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.88 E-value=14 Score=22.81 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
|-.+.|.||...+ ..|..++..|..+|..|...+....
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788887665 7777788888888888777765544
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.40 E-value=30 Score=25.95 Aligned_cols=60 Identities=30% Similarity=0.337 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 28 LSSLTVKELKQLENRLERGITRIRSK--KHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 28 L~~Ls~~EL~~LE~~Le~~l~~IR~r--K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
..++++++....=+++.........- -.+-+..++..|+++...|..++..|..++...+
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999888777777653333322 2345667777888888888888888777765444
No 20
>smart00338 BRLZ basic region leucin zipper.
Probab=74.36 E-value=18 Score=22.33 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 45 RGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 45 ~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
.|..+-|.||...+ ..|..++..|..+|..|..++.....
T Consensus 15 ~aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 15 EAARRSRERKKAEI----EELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776654 78888888888888888888866554
No 21
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=71.59 E-value=19 Score=21.50 Aligned_cols=39 Identities=36% Similarity=0.444 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 45 RGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 45 ~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
.|..+-|.||-..+ ..+..++..|..+|..|..++....
T Consensus 14 ~AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 14 EAARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666665544 7788888889999999988887654
No 22
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.57 E-value=22 Score=24.34 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-CCCCCCHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 5 ESAKLRQQIQMLQNSNRHLMGD-SLSSLTVKELKQL---------------ENRLERGITRIRSKKHEMLLAEIEFLQKR 68 (135)
Q Consensus 5 e~~~L~~~~~~L~~~~R~l~Ge-dL~~Ls~~EL~~L---------------E~~Le~~l~~IR~rK~~ll~~qi~~l~kk 68 (135)
.|..+++++..+...+..+.++ .-..+.+++|..| ++..+.++..|..|+..+ ...|..+.++
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~i-e~~i~~lek~ 89 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETL-ELRVKTLQRQ 89 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444555554444444433321 1123455555555 344455555554444332 4444444444
Q ss_pred HHHHHHHHHHHHHH
Q 045191 69 EIELENESVCLRSK 82 (135)
Q Consensus 69 ~~~l~een~~L~~~ 82 (135)
...+...-..+...
T Consensus 90 ~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 90 EERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444443333333
No 23
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.46 E-value=63 Score=28.23 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 33 VKELKQLENRLER--GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSK 82 (135)
Q Consensus 33 ~~EL~~LE~~Le~--~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~ 82 (135)
+++..+|++.... +.++|-.+|.+.+.+.+..+.+....+.|+|+.|...
T Consensus 360 ~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 360 ITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555544443 5667777888888888888888888888888887654
No 24
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=69.64 E-value=39 Score=25.28 Aligned_cols=43 Identities=21% Similarity=0.398 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 045191 32 TVKELKQLENRLERGITRIRSK---KHEMLLAEIEFLQKREIELEN 74 (135)
Q Consensus 32 s~~EL~~LE~~Le~~l~~IR~r---K~~ll~~qi~~l~kk~~~l~e 74 (135)
+..||..|=++++.|..-||.+ |-.+|.+||..|+..-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999975 667888888888777555443
No 25
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.40 E-value=21 Score=24.61 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+...+..++..++++...+..+|..|+.++.....
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44556777788888888888888888888876654
No 26
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=68.35 E-value=23 Score=22.13 Aligned_cols=32 Identities=34% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
.-+..++..++++...+..+|..|..++....
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788888899999999999988887763
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.59 E-value=28 Score=24.21 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
....|..++..|++.+..+.++|..|+.+-.....
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988876555
No 28
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.98 E-value=88 Score=29.21 Aligned_cols=77 Identities=26% Similarity=0.344 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhc---------CCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 4 QESAKLRQQIQMLQNSNRHLM---------GDSLSSLTVKEL-KQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELE 73 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~---------GedL~~Ls~~EL-~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~ 73 (135)
+|-+.|+.++..|...+|-.. +-+++-+|+.-| ..|+.||..+++.. +++....++|-|-+..+.
T Consensus 394 sENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~-----e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 394 SENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQ-----ELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhH-----HHHHHhHHHHHHHHHHHH
Confidence 455556666655554444311 113333444443 24567776665543 344444555555555566
Q ss_pred HHHHHHHHHHHH
Q 045191 74 NESVCLRSKIAE 85 (135)
Q Consensus 74 een~~L~~~~~~ 85 (135)
+||+.+...+.+
T Consensus 469 ~Enk~~~~~~~e 480 (861)
T PF15254_consen 469 EENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 29
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=65.40 E-value=58 Score=25.56 Aligned_cols=53 Identities=26% Similarity=0.260 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 31 LTVKELKQLENRLERGITRIRSK--KHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 31 Ls~~EL~~LE~~Le~~l~~IR~r--K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
-...|+..|+..++..-+..-.. +..-+..|.+.+.+....|-+++..|+.++
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34456666666666544433322 223445556666666666667777766665
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.32 E-value=71 Score=24.67 Aligned_cols=27 Identities=11% Similarity=0.088 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 60 AEIEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 60 ~qi~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
+.+....+.+..|.++|..|..++...
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555666666666666443
No 31
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.86 E-value=18 Score=25.50 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 50 IRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 50 IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
||. -.+.+.++|.+|..+...|+.||..|+.-.
T Consensus 65 VRE-EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 65 VRE-EVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 454 457899999999999999999999987544
No 32
>PRK11637 AmiB activator; Provisional
Probab=61.78 E-value=97 Score=26.09 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 33 VKELKQLENRLERGITRIRSKKHE--MLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~--ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
..+|..|+.+|...-..|+....+ .+..+|..+++++..++..-...+..+
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666554333 344555555555444444433333333
No 33
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=61.12 E-value=66 Score=23.96 Aligned_cols=54 Identities=31% Similarity=0.348 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 34 KELKQLENRLERGITRIRS----------KKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 34 ~EL~~LE~~Le~~l~~IR~----------rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
.+|..+|..++.+-+...+ .+.....++|+.++++....+.+...|+.+.+...
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677666666555432 24445677777777777777777777777665443
No 34
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.05 E-value=40 Score=21.44 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 35 ELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 35 EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
+|..||..++.=+..... +..+...|+..+..+..++..|..+.+
T Consensus 1 ~L~~Le~kle~Li~~~~~-----L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLER-----LKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888876665543 334444444455555555555544443
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.36 E-value=52 Score=21.21 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 52 SKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 52 ~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
..|.+-..+.|..|+.++..|.++|..|.....+...
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4677888899999999999999999998866655443
No 36
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.68 E-value=1.1e+02 Score=24.68 Aligned_cols=83 Identities=25% Similarity=0.379 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Q 045191 6 SAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRI------------------RSKKHEMLLAEIEFLQK 67 (135)
Q Consensus 6 ~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~I------------------R~rK~~ll~~qi~~l~k 67 (135)
++.|..+++.+...+..=+ ++|+.+-=.++..|+......-..| +.+.++.|..+|...++
T Consensus 122 Ia~L~rqlq~lk~~qqdEl-del~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re 200 (258)
T PF15397_consen 122 IANLVRQLQQLKDSQQDEL-DELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFRE 200 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554433 2444444555555555444332222 34667788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHh
Q 045191 68 REIELENESVCLRSKIAEMERF 89 (135)
Q Consensus 68 k~~~l~een~~L~~~~~~~~~~ 89 (135)
-+..+.++...|+..+......
T Consensus 201 ~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888776654
No 37
>PF14645 Chibby: Chibby family
Probab=55.02 E-value=25 Score=24.79 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 60 AEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 60 ~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
.....++++.+.|.+||+.|+.+++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888889999999988874
No 38
>smart00340 HALZ homeobox associated leucin zipper.
Probab=54.98 E-value=40 Score=19.76 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 63 EFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 63 ~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+.|++=-..|.++|.+|..++++...
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788899999999999988765
No 39
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=54.11 E-value=75 Score=22.39 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 33 VKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
++.+.+||++|-.-+..|-.-|.++ ..+-.....|.-+|..|+..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 5667888888877666655544332 22223333445555556665544
No 40
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=53.86 E-value=61 Score=21.93 Aligned_cols=38 Identities=34% Similarity=0.313 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 50 IRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 50 IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
||+.=......+++.|+.+...+..+|..|...+.+..
T Consensus 70 i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 70 IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666788889999999999999999999987643
No 41
>smart00030 CLb CLUSTERIN Beta chain.
Probab=52.29 E-value=92 Score=24.25 Aligned_cols=30 Identities=10% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLERGITRIRSKKH 55 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~ 55 (135)
++|..||..-=.-+.+++++||.-|..-|+
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~ 36 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIKT 36 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777889999999999977664
No 42
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=51.85 E-value=39 Score=18.50 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 35 ELKQLENRLERGITRIRSKKHEMLLAEIEFLQK 67 (135)
Q Consensus 35 EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~k 67 (135)
.+..|+..+..++..-+--+--.+.++|..+++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 467888888888888888888888888877765
No 43
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=50.61 E-value=1.5e+02 Score=24.69 Aligned_cols=77 Identities=26% Similarity=0.289 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhhhhc-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 7 AKLRQQIQMLQNSNRHLM-----GDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRS 81 (135)
Q Consensus 7 ~~L~~~~~~L~~~~R~l~-----GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~ 81 (135)
+.|+.....|++..+-+. +.|.+....++=..| ..-+...|.+ +.-+..+++.|+++...++..++.|+.
T Consensus 33 EqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~L----a~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 33 EQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNL----AQLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 344444455666665555 232222222232333 3333444433 345778899999999999999999999
Q ss_pred HHHHHhH
Q 045191 82 KIAEMER 88 (135)
Q Consensus 82 ~~~~~~~ 88 (135)
+++....
T Consensus 108 ~la~~r~ 114 (319)
T PF09789_consen 108 KLARQRV 114 (319)
T ss_pred HHHhhhh
Confidence 9866543
No 44
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.13 E-value=1.5e+02 Score=24.81 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 2 YQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRS 81 (135)
Q Consensus 2 w~~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~ 81 (135)
|..+++.|+.-...+.... .-.=..|..|-..+..++.+|.+|- +.|-+|++.+-...+....+-.....
T Consensus 218 WR~hleqm~~~~~~I~~~~---------~~~~~~L~kl~~~i~~~lekI~sRE-k~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESAL---------PETKSQLDKLQQDISKTLEKIESRE-KYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred HHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6666666554443333222 2234567788888999999988764 34455555555444444443333333
Q ss_pred H
Q 045191 82 K 82 (135)
Q Consensus 82 ~ 82 (135)
+
T Consensus 288 ~ 288 (359)
T PF10498_consen 288 K 288 (359)
T ss_pred H
Confidence 3
No 45
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.08 E-value=85 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
++|..+...++.|+..++.++..|+.++++
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 567777888899999999999999999854
No 46
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.94 E-value=86 Score=21.93 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
....+..++..|++.+..+.++|..|+-+-.....
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999988655444
No 47
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=48.23 E-value=91 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLERGITRIRSKK 54 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le~~l~~IR~rK 54 (135)
++|.+||..--..+.+++++||.-|..-|
T Consensus 1 ~~Lk~lS~~GekyvdeEik~Al~GvKqMK 29 (436)
T PF01093_consen 1 ENLKELSEQGEKYVDEEIKNALNGVKQMK 29 (436)
T ss_pred CchHHHhHhCchhHHHHHHHHHHHHHHHH
Confidence 35666777777788889999988887655
No 48
>PRK09039 hypothetical protein; Validated
Probab=47.26 E-value=1.6e+02 Score=24.30 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 4 QESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKH 55 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~ 55 (135)
.++..|+.+|+.|+.. |..||..|+.+-.+.+..+.
T Consensus 137 ~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~~ 172 (343)
T PRK09039 137 AQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQA 172 (343)
T ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777755 88888888888777755443
No 49
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.86 E-value=44 Score=27.59 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHH-------------------------------HHHHHHHHHHHHHHHHH
Q 045191 34 KELKQLENRLERGITRIRSKK------HEMLL-------------------------------AEIEFLQKREIELENES 76 (135)
Q Consensus 34 ~EL~~LE~~Le~~l~~IR~rK------~~ll~-------------------------------~qi~~l~kk~~~l~een 76 (135)
.....||+.|..+...|..-+ ++++. -+++.|++|.+.|+++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 566778888888887777544 44422 13588999999999999
Q ss_pred HHHHHHHHHHh
Q 045191 77 VCLRSKIAEME 87 (135)
Q Consensus 77 ~~L~~~~~~~~ 87 (135)
..|+.+.....
T Consensus 177 ~~LR~Ea~~L~ 187 (306)
T PF04849_consen 177 EQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHhh
Confidence 99998875543
No 50
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=44.44 E-value=35 Score=20.04 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 53 KKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 53 rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
+.+..++..|..+.++...|..+|..|+..+
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3455677788888899999999999988765
No 51
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=43.48 E-value=85 Score=19.94 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 55 HEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 55 ~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
...+..++..++++...++.+|..|+.++....+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4467778899999999999999999998866443
No 52
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=42.96 E-value=98 Score=20.53 Aligned_cols=43 Identities=30% Similarity=0.312 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccc
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIAEMERFQQANMVT 96 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~~~~~~~~~ 96 (135)
|.+.+...|+..+.|...++...+.|..+..+.+......++.
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR 44 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVR 44 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888888888887777755544443
No 53
>PF14282 FlxA: FlxA-like protein
Probab=42.83 E-value=1.1e+02 Score=20.95 Aligned_cols=55 Identities=27% Similarity=0.429 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 4 QESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENE 75 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~ee 75 (135)
..++.|+++|..|+..+..+... .+++.++ +..|.+.|..+|..|+..+..+..+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~---------------k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--SDLDAEQ---------------KQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCCHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877752 2334433 3466677777887777776654443
No 54
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=41.15 E-value=2.3e+02 Score=24.31 Aligned_cols=30 Identities=37% Similarity=0.522 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 33 VKELKQLENRLERGITRIRSKKHEMLLAEI 62 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi 62 (135)
=.|..+||++|-.++.-|-++|.+..+.+.
T Consensus 185 e~di~~lErrL~qtmdmiisKKkk~a~~~l 214 (462)
T KOG2417|consen 185 ETDIIQLERRLAQTMDMIISKKKKMAMAQL 214 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999888885
No 55
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.14 E-value=1.5e+02 Score=22.16 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 33 VKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
+.+|......|..+|..+. ..+-+..+|..|++....+.+.-+.+...+.+..
T Consensus 4 ~~~L~~~d~~L~~~L~~l~--~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQ--EHQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999998884 3455566677777766666666555555554433
No 56
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.90 E-value=86 Score=21.48 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 55 HEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 55 ~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
-|+-.++.+-|++|...+.++|..|..++.....
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999999999999998865443
No 57
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=40.38 E-value=37 Score=23.09 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045191 34 KELKQLENRLERGITRIRSKKH 55 (135)
Q Consensus 34 ~EL~~LE~~Le~~l~~IR~rK~ 55 (135)
.||.++|++-...|..|+.+=.
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~ 49 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDN 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999988887543
No 58
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=38.23 E-value=1.4e+02 Score=20.98 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
..+..+|..++++...|...|+.|..+|+.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778888888888999999998888753
No 59
>smart00338 BRLZ basic region leucin zipper.
Probab=38.04 E-value=95 Score=18.93 Aligned_cols=29 Identities=38% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 55 HEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 55 ~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.+.+..+...|+.++..+..++..|...+
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777777777777666544
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=37.96 E-value=3.8e+02 Score=25.92 Aligned_cols=85 Identities=25% Similarity=0.353 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhhcCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHHHHH
Q 045191 3 QQESAKLRQQIQMLQNS-------NRHLMGDSLSSLTVKELKQLENR---LERGITRIRSKK------HEMLLAEIEFLQ 66 (135)
Q Consensus 3 ~~e~~~L~~~~~~L~~~-------~R~l~GedL~~Ls~~EL~~LE~~---Le~~l~~IR~rK------~~ll~~qi~~l~ 66 (135)
+.+++.+++.++.|... .-. .|-|....|--++.+||++ |..+|-+.|.-- .+.+..+.+..+
T Consensus 331 Q~eve~lkEr~deletdlEILKaEmee-kG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~ 409 (1243)
T KOG0971|consen 331 QQEVEALKERVDELETDLEILKAEMEE-KGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKN 409 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 45666666666544433 222 2778888888899999965 666887777521 123344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 045191 67 KREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 67 kk~~~l~een~~L~~~~~~~~~ 88 (135)
..+..|......|..++..++.
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAES 431 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666544443
No 61
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=37.81 E-value=1.2e+02 Score=19.95 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
....+..+++.+++....+.++|..|.-++.....
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566677999999999999999999988765443
No 62
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=37.01 E-value=1.5e+02 Score=21.35 Aligned_cols=54 Identities=17% Similarity=0.041 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++|++++..+=..+...-...-..-..++..++..+..+...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999888765543221111112224566667777777777777666666555
No 63
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=36.97 E-value=2.7e+02 Score=25.44 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 34 KELKQLENRLERGITRIRSKKHEM---LLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 34 ~EL~~LE~~Le~~l~~IR~rK~~l---l~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+.|..|+++-+.=+...+.++..+ ..++++.||.-+..|++|++.|..+......
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357888888888888888777764 4677888888899999999999887755443
No 64
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.81 E-value=81 Score=23.69 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 045191 36 LKQLENRLERGITRIRSKKHEMLLAEI---EFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 36 L~~LE~~Le~~l~~IR~rK~~ll~~qi---~~l~kk~~~l~een~~L~~~~ 83 (135)
|..+|..+..|+.+- =+|..+| +.|+-++..|.+|-.-|+.++
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887653 3444444 334444455555555555555
No 65
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=36.49 E-value=1.6e+02 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIEL 72 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l 72 (135)
-+|++.|++|+-.|-+. ++-+..+++.|+.|+..|
T Consensus 24 ~~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 24 HELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL 58 (420)
T ss_pred ccccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH
Confidence 47889999999888543 355677788888887777
No 66
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=35.80 E-value=72 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 33 VKELKQLENRLERGITRIRSKKHEM 57 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~l 57 (135)
-.++..+|+.|..+...+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6799999999999999999998764
No 67
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=35.59 E-value=1.6e+02 Score=20.68 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
++|++|+..+=...+.+-... ..-..++..++..+..+...+...-..|...+..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQ 111 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888887644332221111 1123567777888888877777766666666543
No 68
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=34.86 E-value=1.7e+02 Score=21.05 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045191 36 LKQLENRLERGITRIRSKK 54 (135)
Q Consensus 36 L~~LE~~Le~~l~~IR~rK 54 (135)
+..||.+|+..-..+..-|
T Consensus 44 ~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 69
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=34.76 E-value=74 Score=23.32 Aligned_cols=27 Identities=30% Similarity=0.223 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 57 MLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 57 ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
-|-.+|++|+.|+..|.+....|+..=
T Consensus 110 ~ID~eIe~Lq~Ki~~LKeiR~hLk~~R 136 (145)
T PF12548_consen 110 HIDHEIETLQDKIKNLKEIRGHLKKKR 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357899999999999999999887653
No 70
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=34.75 E-value=1.4e+02 Score=23.81 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 44 ERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 44 e~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
..|+++=|.+.-+.. +.++.|+..|..+|..|+.++++...
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554433333 77888999999999999999977655
No 71
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.70 E-value=1.7e+02 Score=20.91 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 38 QLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 38 ~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
.+-++|+.--..|++.|.|+. .+|+.+-.|.....+.....+.++.+...
T Consensus 47 ~v~kql~~vs~~l~~tKkhLs-qRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTKKHLS-QRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 456777887788888887765 67888877777777777777766655444
No 72
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.94 E-value=3.5e+02 Score=24.24 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045191 5 ESAKLRQQIQMLQNSNRH 22 (135)
Q Consensus 5 e~~~L~~~~~~L~~~~R~ 22 (135)
++..|+.+++.|+..+++
T Consensus 165 e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 165 EVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544444
No 73
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=33.54 E-value=2e+02 Score=22.16 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=15.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045191 25 GDSLSSLTVKELKQLENRLERGITRIR 51 (135)
Q Consensus 25 GedL~~Ls~~EL~~LE~~Le~~l~~IR 51 (135)
|.+.=-.....|..+...++..+..+|
T Consensus 130 g~naW~~~n~~Le~~~~~le~~l~~~k 156 (221)
T PF05700_consen 130 GENAWLIHNEQLEAMLKRLEKELAKLK 156 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433445666666666666666554
No 74
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=33.40 E-value=1.4e+02 Score=21.08 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 57 MLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 57 ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
.+..+|..+++....+.++|..|+.+......
T Consensus 19 ~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 19 VLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 35678999999999999999999988765444
No 75
>PRK11637 AmiB activator; Provisional
Probab=32.93 E-value=3e+02 Score=23.16 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 35 ELKQLENRLERGITRIRSKKHE--MLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 35 EL~~LE~~Le~~l~~IR~rK~~--ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
++..++.+++..-..|.....+ -...+|..+++++..++.+-..+..++.....
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444433222 24455555555555555555555555544433
No 76
>PF15058 Speriolin_N: Speriolin N terminus
Probab=32.69 E-value=1.2e+02 Score=23.42 Aligned_cols=34 Identities=29% Similarity=0.144 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+++.++.+.++|||.++. ..||..|+.-+.+...
T Consensus 13 qierLv~ENeeLKKlVrL-irEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 13 QIERLVRENEELKKLVRL-IRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 455566888999988884 5667777777655443
No 77
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=32.45 E-value=57 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.512 Sum_probs=31.9
Q ss_pred HHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045191 14 QMLQNSNRHLMG--DSLSSLTVKELKQLENRLERGITRIRS 52 (135)
Q Consensus 14 ~~L~~~~R~l~G--edL~~Ls~~EL~~LE~~Le~~l~~IR~ 52 (135)
..+-.-+|++.. +.=-+||+++++.+|.+....|.++|.
T Consensus 218 ~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~~~~ 258 (258)
T cd08888 218 RLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDEMRE 258 (258)
T ss_pred HHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 455677788765 556689999999999999999999883
No 78
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=32.45 E-value=1.6e+02 Score=19.88 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++|++|+..+=.....+-..+. .-..++..++..+..+...+...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIP-ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888887765332222111111 1235666666777666666665555555444
No 79
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=32.30 E-value=1.1e+02 Score=18.17 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENES 76 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een 76 (135)
|||++|++.+=.--+.+-......+ .++..+++.+.++...+..--
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~ 59 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALR 59 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4888888776511111111122222 555556666666655554433
No 80
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=31.57 E-value=91 Score=18.73 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045191 27 SLSSLTVKELKQLENRLERGITRIRSKK 54 (135)
Q Consensus 27 dL~~Ls~~EL~~LE~~Le~~l~~IR~rK 54 (135)
||-++|.+||...-..+...+-..|..+
T Consensus 1 elr~~s~~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 1 ELREKSKEELAKKLDELKKELFELRFQK 28 (55)
T ss_pred CHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888888888888888877543
No 81
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=31.39 E-value=3.5e+02 Score=26.60 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 5 ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQK 67 (135)
Q Consensus 5 e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~k 67 (135)
.+..|++++..|+.+-=+ |-.+-+...+.+...||++|...-.++=.-=---+..+|+.|.+
T Consensus 1132 ~lnnlqqElklLRnEK~R-mh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1132 NLNNLQQELKLLRNEKIR-MHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred HHHHHHHHHHHHHhHHHh-hccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 456778888888776433 33455669999999999999887665544333333445555554
No 82
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.22 E-value=1.2e+02 Score=25.16 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 28 LSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENES 76 (135)
Q Consensus 28 L~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een 76 (135)
-.+||..|-..| .+||.||.+++ ++|+.|+..+...-++-
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~ei 47 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEI 47 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 346777665544 57999998876 67888888776655443
No 83
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.19 E-value=4.7e+02 Score=24.90 Aligned_cols=79 Identities=23% Similarity=0.193 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 3 QQESAKLRQQIQMLQNSNRHLMG--DSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLR 80 (135)
Q Consensus 3 ~~e~~~L~~~~~~L~~~~R~l~G--edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~ 80 (135)
+.++-+|-++++.+-...-.--| |....++.+++..|......--.-||+ +-.+|+.+++++..+..+|..|.
T Consensus 617 D~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~-----lD~~~e~lkQ~~~~l~~e~eeL~ 691 (970)
T KOG0946|consen 617 DFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRE-----LDYQIENLKQMEKELQVENEELE 691 (970)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556665555444322222112 344567777777776666654444544 45678888888888888888888
Q ss_pred HHHHHH
Q 045191 81 SKIAEM 86 (135)
Q Consensus 81 ~~~~~~ 86 (135)
.++...
T Consensus 692 ~~vq~~ 697 (970)
T KOG0946|consen 692 EEVQDF 697 (970)
T ss_pred HHHHHH
Confidence 877554
No 84
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=30.98 E-value=1.1e+02 Score=26.65 Aligned_cols=58 Identities=26% Similarity=0.265 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEML-----------------------LAEIEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll-----------------------~~qi~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
+.++....=|-+.=|..|++||.+=-... ..+...|++|+..|+..|..|..++.-.
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 35555555666666777888874321111 1233456666666666666666666443
Q ss_pred h
Q 045191 87 E 87 (135)
Q Consensus 87 ~ 87 (135)
+
T Consensus 313 Q 313 (472)
T KOG0709|consen 313 Q 313 (472)
T ss_pred H
Confidence 3
No 85
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.69 E-value=1.4e+02 Score=18.50 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 53 KKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 53 rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
.|...|..++.+|..|+..|..+-..++..+....
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888999999999999998888888875443
No 86
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.12 E-value=1.8e+02 Score=19.78 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++|++|+..+=...+.+-...-..-..++.+++..+.++...+...-..|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777776643332221001111124555555666666555555555554444
No 87
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.65 E-value=4.1e+02 Score=23.74 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045191 7 AKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIR 51 (135)
Q Consensus 7 ~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR 51 (135)
..+..+++.+...++..-.+ +++..|+..++..-..|.
T Consensus 401 ~~~e~el~~l~~~l~~~~~~-------e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 401 RELEEELAEVDKKISTIPSE-------EQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHHHHHHH
Confidence 34444445555444443331 344555554444444443
No 88
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=29.27 E-value=88 Score=18.84 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=6.7
Q ss_pred CCCCCHHHHHH
Q 045191 28 LSSLTVKELKQ 38 (135)
Q Consensus 28 L~~Ls~~EL~~ 38 (135)
|..+|++||++
T Consensus 5 Lk~ls~~eL~~ 15 (49)
T PF11629_consen 5 LKFLSYEELQQ 15 (49)
T ss_dssp GGGS-HHHHHH
T ss_pred HhhCCHHHHHH
Confidence 45677887765
No 89
>PRK09343 prefoldin subunit beta; Provisional
Probab=29.07 E-value=2e+02 Score=20.02 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHH--HHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 30 SLTVKELKQLENR--LERGITR--IRSKKHEM---LLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 30 ~Ls~~EL~~LE~~--Le~~l~~--IR~rK~~l---l~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
.+.++||..|+.. +=.++.. |+.-|..+ +...++.+..++..+...-..|+.++.+.+
T Consensus 41 ~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q 105 (121)
T PRK09343 41 NKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQ 105 (121)
T ss_pred HHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777632 2222222 22223222 233344444444444444445555554443
No 90
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.98 E-value=2.4e+02 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLR 80 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~ 80 (135)
+-|..++..++.....+.++|..|.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt 187 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELT 187 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 3445555566555555555554443
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.88 E-value=2e+02 Score=21.90 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 48 TRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 48 ~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
-..|.-|..-+.+++..++.+...+..+|..|+.--.
T Consensus 7 lSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~ 43 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKLQELRKENKTLKQLQK 43 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778899999999999999999999876543
No 92
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=27.81 E-value=82 Score=25.66 Aligned_cols=38 Identities=34% Similarity=0.501 Sum_probs=29.9
Q ss_pred HHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045191 16 LQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSK 53 (135)
Q Consensus 16 L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~r 53 (135)
++...++..=|.|.+|++.||.+|=..|-..+..|-.-
T Consensus 204 ~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfee 241 (285)
T PF06937_consen 204 LQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVFEE 241 (285)
T ss_pred ccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777789999999999999988887766655543
No 93
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.74 E-value=2.9e+02 Score=21.35 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 045191 4 QESAKLRQQIQMLQNSNRHLMG 25 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~G 25 (135)
..+..++...+.|+..+-..+.
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655554
No 94
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=26.97 E-value=2.8e+02 Score=20.94 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 59 LAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 59 ~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.++|..++.+...|..++..|..+.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444
No 95
>PLN02372 violaxanthin de-epoxidase
Probab=26.94 E-value=4.3e+02 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 33 VKELKQLENRLERGITRIRSKKHEMLLA 60 (135)
Q Consensus 33 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~ 60 (135)
++|..++|++++.-+.+|+..-..++..
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888888888888776666554
No 96
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=26.73 E-value=1.2e+02 Score=30.03 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHH
Q 045191 4 QESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGIT 48 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~ 48 (135)
.++++|.++++.++.++..+.+-....|..+||..++..++....
T Consensus 1102 e~v~kL~~e~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~ 1146 (1388)
T PTZ00108 1102 EKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEE 1146 (1388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999988889999999999998887644
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.53 E-value=5.1e+02 Score=23.82 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 045191 55 HEMLLAEIEFLQKR 68 (135)
Q Consensus 55 ~~ll~~qi~~l~kk 68 (135)
.+.++..+..++.|
T Consensus 589 ~e~L~~aL~amqdk 602 (697)
T PF09726_consen 589 TEVLMSALSAMQDK 602 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666665
No 98
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=26.34 E-value=1.1e+02 Score=20.17 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 045191 8 KLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITR 49 (135)
Q Consensus 8 ~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~ 49 (135)
+|+..++.|+.++++. ..++.-.-..|..|-.+++..+..
T Consensus 1 kL~~~L~~L~~eL~~~--~~ld~~~~~~L~~l~~dIe~~L~~ 40 (85)
T PF14357_consen 1 KLQELLEKLHQELEQN--PPLDEETRAELSSLDDDIEAQLAE 40 (85)
T ss_pred CHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3667777787777763 456677777788887777777665
No 99
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.31 E-value=1.4e+02 Score=17.34 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
-+..+...-+.|+.....|..+|..|+.++.....
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888899999999888866543
No 100
>PHA02109 hypothetical protein
Probab=25.82 E-value=1.6e+02 Score=22.76 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=22.1
Q ss_pred hhhcCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 21 RHLMGDSLSSLT--VKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELE 73 (135)
Q Consensus 21 R~l~GedL~~Ls--~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~ 73 (135)
|...|+.|++|+ ++++-.||-.| +.+..+.-.++.|..++.
T Consensus 178 ~~~t~~~L~~~~~~L~~I~~L~~ki------------~~LS~E~~Q~~~Ki~N~R 220 (233)
T PHA02109 178 RSHTGENLEGLTDKLKQISELTIKL------------EALSDEACQVKHKILNLR 220 (233)
T ss_pred hccchhhhhhhhHHHHhhHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 556677777765 44444444433 345555555555554443
No 101
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=25.62 E-value=16 Score=20.94 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 27 SLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60 (135)
Q Consensus 27 dL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~ 60 (135)
||..+++.||..+=+.+... ..-+.+|.+++..
T Consensus 1 eL~~~~~~eL~~iAk~lgI~-~~~~~~K~eLI~~ 33 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIE-GYSKMRKQELIFA 33 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-T-TGCCS-HHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCC-CCCcCCHHHHHHH
Confidence 46789999999998887763 2335567777754
No 102
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=25.31 E-value=4.9e+02 Score=23.19 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLERGITRIR---SKKHEM---LLAEIEFLQKREIELE 73 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le~~l~~IR---~rK~~l---l~~qi~~l~kk~~~l~ 73 (135)
-||+.||-+||+ ++++.|+..+- .-|.|+ +.+||..|.+=+..++
T Consensus 197 l~i~~lsteelr---~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInFlQ 247 (621)
T KOG3759|consen 197 LDIDKLSTEELR---RQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINFLQ 247 (621)
T ss_pred CCcccccHHHHH---HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899998876 68899888763 234443 3444444444444333
No 103
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.98 E-value=2.3e+02 Score=19.22 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGI---TRIRSKKHEMLLAEIEFLQKREIELENESVCLRS 81 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l---~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~ 81 (135)
++|++|+..+=.....+- ... ....+++..++..+..+...+...-..|..
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888877644333221 111 122356666666666666666555554443
No 104
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=24.95 E-value=46 Score=24.60 Aligned_cols=18 Identities=50% Similarity=0.748 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 045191 28 LSSLTVKELKQLENRLER 45 (135)
Q Consensus 28 L~~Ls~~EL~~LE~~Le~ 45 (135)
|..||.+||.+|+..|+.
T Consensus 21 L~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 21 LAKLSPEELEELENELEE 38 (147)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 458999999999987743
No 105
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=24.86 E-value=2.8e+02 Score=22.41 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 40 ENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 40 E~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+.........|..+|.+++ ..+.+|...|.++...|...+.....
T Consensus 77 ~~~~~e~~~~l~~Kk~eLi----~~l~~kl~~L~~eqe~l~ee~~~n~~ 121 (264)
T PF08687_consen 77 SDSDDENDNDLNAKKVELI----ESLSKKLEVLQEEQEALQEEIQANEA 121 (264)
T ss_dssp ---------HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677888898887 67888888888888888877755444
No 106
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=24.86 E-value=1.9e+02 Score=18.37 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045191 2 YQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRI 50 (135)
Q Consensus 2 w~~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~I 50 (135)
|..+...+..++......+++.|+-....=-+..++..=+-++.|+..|
T Consensus 12 ~~~~~~~i~~~L~~a~~~vkr~L~~G~~P~eyQq~q~~~~AieAA~~Vi 60 (68)
T PF08988_consen 12 SGEEARAIEQQLRQAQSQVKRKLDRGGTPQEYQQLQQQYDAIEAAIAVI 60 (68)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTCTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655433323333333333344444444
No 107
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.62 E-value=2.4e+02 Score=19.35 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 57 MLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 57 ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
-...++..|+++...|..|+..|...++
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888876664
No 108
>PRK14127 cell division protein GpsB; Provisional
Probab=24.55 E-value=2.5e+02 Score=19.56 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 61 EIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 61 qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
..+.+.+....|.+++..|..++.+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666677777766665554
No 109
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.50 E-value=2.6e+02 Score=19.83 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 57 MLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 57 ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.+.-+|.+|++++..+.+.-..|+.+|
T Consensus 81 ~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 81 TLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555
No 110
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=24.46 E-value=3.9e+02 Score=21.76 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLEN-RLE--RGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 30 ~Ls~~EL~~LE~-~Le--~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
++..+|+..||+ .+. .+.++-|.||- +.|..|++|+..+.-.|..|...+...
T Consensus 198 d~e~qe~~kleRkrlrnreaa~Kcr~rkL----drisrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 198 DMEDQEKIKLERKRLRNREAASKCRKRKL----DRISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 355677888886 222 35666666664 455888888888877777776665443
No 111
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=24.04 E-value=2.6e+02 Score=19.54 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLER-GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~-~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++|++|+..+=..... +-... ..-..++..++..++++...+......|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888876543211 10011 11235677778888888777766666655544
No 112
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=23.77 E-value=2.1e+02 Score=18.31 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 59 LAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 59 ~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.+.|..|+.++..+......+..++
T Consensus 32 ~~~IKKLr~~~~e~e~~~~~l~~~~ 56 (74)
T PF12329_consen 32 NNTIKKLRAKIKELEKQIKELKKKL 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444333333333333333
No 113
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.61 E-value=2e+02 Score=18.19 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 57 MLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 57 ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
.+...|+.|=.....|..+|..|+.+......
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888999999888866544
No 114
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=23.35 E-value=1.9e+02 Score=22.32 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 53 KKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 53 rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
|+-+....+|..||.-...|+++|..|+.-+
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666666665443
No 115
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.29 E-value=5.4e+02 Score=22.95 Aligned_cols=51 Identities=10% Similarity=0.265 Sum_probs=31.0
Q ss_pred cHHHHHHH--HHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045191 2 YQQESAKL--RQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKK 54 (135)
Q Consensus 2 w~~e~~~L--~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK 54 (135)
|.+.+..| +.+++..+..+..+...++. ++.++.+.-+.++.-.+.++.-|
T Consensus 180 w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik--~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 180 WKKRKKDLPNKQDLEEYKKRLEAIKKKDIK--NPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666 66667777777777765544 34566666666665555554433
No 116
>PLN02320 seryl-tRNA synthetase
Probab=23.07 E-value=5.3e+02 Score=22.79 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 045191 7 AKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLEN---RLERGITRIRSKKHEM 57 (135)
Q Consensus 7 ~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~---~Le~~l~~IR~rK~~l 57 (135)
..+++..+.+...++.+ |-+ ++++++..|.+ .+..-+..+|.+++.+
T Consensus 70 k~ir~n~~~v~~~l~~R-~~~---~~vd~l~~ld~~~r~~~~~~~~lr~ern~~ 119 (502)
T PLN02320 70 KWIRDNKEAVAINIRNR-NSN---ANLELVLELYENMLALQKEVERLRAERNAV 119 (502)
T ss_pred HHHHhCHHHHHHHHHhc-CCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777666 333 34888888884 4555666667666554
No 117
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=22.22 E-value=3.3e+02 Score=20.07 Aligned_cols=47 Identities=9% Similarity=0.237 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++|++|+..+=..-.. ....++.+++..+.++...+...-..|...+
T Consensus 58 G~sL~eI~~ll~~~~~-------~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGD-------DATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778887775332221 2234566666666666666666555555544
No 118
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.09 E-value=2.7e+02 Score=19.10 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRI--RSKKHEMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~I--R~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
++|++++..+=.....+-... .....+++.+++..+..+...+...-..|...+..
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478887776655443322111 12233577778888888877777776666666643
No 119
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.03 E-value=6e+02 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC
Q 045191 4 QESAKLRQQIQMLQNSNRHLMGD 26 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~Ge 26 (135)
+.++.|+.+++.|...+|.+.+.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 56788999999999888887654
No 120
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=21.60 E-value=67 Score=19.53 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045191 28 LSSLTVKELKQLENRLERGITRIRSKK 54 (135)
Q Consensus 28 L~~Ls~~EL~~LE~~Le~~l~~IR~rK 54 (135)
|-.||.+||...-..+...+-..|..+
T Consensus 4 lr~ls~~eL~~~l~elk~eL~~Lr~q~ 30 (58)
T PF00831_consen 4 LRELSDEELQEKLEELKKELFNLRFQK 30 (58)
T ss_dssp HCHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666665555544
No 121
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=21.24 E-value=55 Score=22.81 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLE 44 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le 44 (135)
..+++||.+|+..|..++|
T Consensus 85 kRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 85 KRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHHhCCHHHHHHHHHHhc
Confidence 4578899999999999886
No 122
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=21.22 E-value=2.9e+02 Score=19.09 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++|++|+..+=.....+-... ..-..++..++..+.++...+......|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888887543222211111 11125677777777777777766666655544
No 123
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.14 E-value=5.7e+02 Score=22.48 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 4 QESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.+++.|..+++.|..+...+. +....+.+++..++...|. -+..+.+.++.....+...-..|..++
T Consensus 73 ~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~----~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 73 KRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQ----ELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554442 2234566777777777663 233345555555555555444555555
Q ss_pred H
Q 045191 84 A 84 (135)
Q Consensus 84 ~ 84 (135)
.
T Consensus 140 ~ 140 (472)
T TIGR03752 140 A 140 (472)
T ss_pred h
Confidence 3
No 124
>PHA01750 hypothetical protein
Probab=20.91 E-value=2.4e+02 Score=18.12 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 44 ERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLR 80 (135)
Q Consensus 44 e~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~ 80 (135)
..|++.|-..--.=+..+|+.++.|..++++.-+.+.
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334333333333334444444444444444333333
No 125
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=20.86 E-value=1.4e+02 Score=21.64 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCH
Q 045191 2 YQQESAKLRQQIQMLQNSNRHLMGDSLSSLTV 33 (135)
Q Consensus 2 w~~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~ 33 (135)
.+.++++.++.+..+-..||++.|-|-+.+..
T Consensus 8 Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp 39 (134)
T PF04697_consen 8 LQAQLEKAKESLKNVDENIKKLTGRDPSENRP 39 (134)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhCCCccccCc
Confidence 35678888888888999999999999665544
No 126
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.79 E-value=5.4e+02 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 59 LAEIEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 59 ~~qi~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
..+|-.+++|...+..++...+.++++.
T Consensus 300 eseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 300 ESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4444445555555555555555555443
No 127
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.72 E-value=4e+02 Score=22.09 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 55 HEMLLAEIEFLQKREIELENESVCLRS 81 (135)
Q Consensus 55 ~~ll~~qi~~l~kk~~~l~een~~L~~ 81 (135)
+.++..++.+.+.+.+.|.++|..|+.
T Consensus 36 n~~Lk~El~~ek~~~~~L~~e~~~lr~ 62 (310)
T PF09755_consen 36 NRVLKRELETEKARCKHLQEENRALRE 62 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555544443
No 128
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=20.53 E-value=2e+02 Score=17.03 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045191 54 KHEMLLAEIEFLQKREIELENE 75 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~ee 75 (135)
|.+=+-.+|..|++|...|...
T Consensus 20 kiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 20 KIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4444566777777776555443
No 129
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=20.26 E-value=3.5e+02 Score=19.71 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++|++|+..+=.....+-...-..-..++..++..+.++...+...-..|...+
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888887654332221100011234455556666666666665555555444
No 130
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.02 E-value=2.6e+02 Score=18.12 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcC
Q 045191 4 QESAKLRQQIQMLQNSNRHLMG 25 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~G 25 (135)
..+..++.++...+..++.+-|
T Consensus 28 ~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 28 TATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 3455667777777777777666
Done!