Query 045191
Match_columns 135
No_of_seqs 134 out of 1329
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jee_A YIIU; FTSZ, septum, coi 92.3 1.5 5E-05 28.3 9.2 46 31-81 3-48 (81)
2 2dgc_A Protein (GCN4); basic d 87.2 3.1 0.00011 25.3 6.6 38 46-87 20-57 (63)
3 2wt7_A Proto-oncogene protein 84.3 4.9 0.00017 24.2 6.6 39 46-88 13-51 (63)
4 1dh3_A Transcription factor CR 83.5 5 0.00017 23.6 6.4 38 46-87 12-49 (55)
5 1t2k_D Cyclic-AMP-dependent tr 82.6 5.7 0.0002 23.6 6.6 39 46-88 12-50 (61)
6 1jnm_A Proto-oncogene C-JUN; B 81.6 6.4 0.00022 23.5 6.6 39 46-88 12-50 (62)
7 1dip_A Delta-sleep-inducing pe 80.9 2.9 9.9E-05 26.5 4.5 26 56-81 18-43 (78)
8 1ci6_A Transcription factor AT 77.3 9.4 0.00032 23.0 7.0 39 46-88 13-51 (63)
9 2v71_A Nuclear distribution pr 75.4 22 0.00075 26.2 10.0 48 1-54 14-62 (189)
10 2oqq_A Transcription factor HY 75.2 8.8 0.0003 21.6 5.5 28 56-83 13-40 (42)
11 2dfs_A Myosin-5A; myosin-V, in 72.3 48 0.0017 30.4 11.8 26 63-88 1019-1044(1080)
12 2yy0_A C-MYC-binding protein; 71.9 10 0.00035 22.2 5.0 29 56-84 22-50 (53)
13 3nmd_A CGMP dependent protein 71.4 16 0.00055 22.9 7.5 51 27-84 14-64 (72)
14 1a93_B MAX protein, coiled coi 65.2 13 0.00045 19.9 4.0 26 52-77 6-31 (34)
15 1gd2_E Transcription factor PA 61.5 26 0.00088 21.6 6.3 43 45-87 18-63 (70)
16 3hnw_A Uncharacterized protein 58.9 42 0.0014 23.2 9.2 53 36-88 77-131 (138)
17 1go4_E MAD1 (mitotic arrest de 55.3 23 0.00078 23.5 4.8 29 60-88 12-40 (100)
18 2aze_B Transcription factor E2 53.0 16 0.00055 24.3 3.8 37 53-89 6-42 (106)
19 1ytz_T Troponin T; muscle, THI 52.7 37 0.0012 22.7 5.5 33 26-58 37-69 (107)
20 1g6u_A Domain swapped dimer; d 51.7 29 0.001 19.3 4.6 21 29-49 15-35 (48)
21 3oja_B Anopheles plasmodium-re 51.2 1E+02 0.0034 25.3 11.7 30 54-83 524-553 (597)
22 1hjb_A Ccaat/enhancer binding 50.6 47 0.0016 21.3 6.6 40 46-89 26-65 (87)
23 1e52_A Excinuclease ABC subuni 50.2 17 0.00058 22.0 3.2 43 26-68 12-58 (63)
24 3s9g_A Protein hexim1; cyclin 48.7 56 0.0019 21.7 8.2 58 26-84 25-89 (104)
25 3thf_A Protein shroom; coiled- 48.3 44 0.0015 24.7 5.8 39 46-88 9-47 (190)
26 3gp4_A Transcriptional regulat 46.8 66 0.0023 21.9 9.0 58 30-88 59-116 (142)
27 3anw_B GINS23, putative unchar 46.5 38 0.0013 24.5 5.1 50 6-56 82-133 (171)
28 1gu4_A CAAT/enhancer binding p 46.4 52 0.0018 20.6 6.6 39 46-88 26-64 (78)
29 3s4r_A Vimentin; alpha-helix, 46.3 56 0.0019 21.0 8.8 31 56-86 52-82 (93)
30 2w6a_A ARF GTPase-activating p 45.9 47 0.0016 20.0 8.6 51 30-80 9-61 (63)
31 1ci6_A Transcription factor AT 43.9 49 0.0017 19.6 5.8 31 54-84 31-61 (63)
32 2l5g_A GPS2 protein, G protein 41.6 43 0.0015 18.2 3.7 22 59-80 14-35 (38)
33 3m48_A General control protein 41.3 40 0.0014 17.8 3.6 25 63-87 3-27 (33)
34 1deb_A APC protein, adenomatou 40.9 53 0.0018 19.1 4.4 25 63-87 6-30 (54)
35 3na7_A HP0958; flagellar bioge 40.3 1.1E+02 0.0038 22.7 11.2 42 32-73 88-131 (256)
36 1j1d_C Troponin I, TNI; THIN f 39.0 94 0.0032 21.5 9.9 50 9-58 31-85 (133)
37 3na7_A HP0958; flagellar bioge 37.0 1.3E+02 0.0044 22.4 9.2 27 56-82 93-119 (256)
38 3oja_B Anopheles plasmodium-re 33.0 2E+02 0.0068 23.5 10.4 28 60-87 551-578 (597)
39 2jee_A YIIU; FTSZ, septum, coi 33.0 94 0.0032 19.7 6.3 34 53-86 13-46 (81)
40 1t2k_D Cyclic-AMP-dependent tr 32.6 76 0.0026 18.5 5.5 29 55-83 31-59 (61)
41 2oxj_A Hybrid alpha/beta pepti 32.3 60 0.0021 17.2 4.0 25 62-86 3-27 (34)
42 3m9b_A Proteasome-associated A 31.5 96 0.0033 23.8 5.6 6 115-120 133-138 (251)
43 1j1e_C Troponin I, TNI; THIN f 30.5 1.6E+02 0.0053 21.4 9.0 33 26-58 53-85 (180)
44 3hnw_A Uncharacterized protein 29.0 1.4E+02 0.0048 20.5 11.1 67 4-84 68-134 (138)
45 3gpv_A Transcriptional regulat 28.6 1.4E+02 0.0048 20.3 8.3 57 30-87 73-129 (148)
46 3twe_A Alpha4H; unknown functi 28.6 59 0.002 16.0 2.9 17 5-21 9-25 (27)
47 3azd_A Short alpha-tropomyosin 28.2 31 0.0011 18.5 1.7 26 60-85 4-29 (37)
48 1gk7_A Vimentin; intermediate 27.9 78 0.0027 17.1 5.0 26 59-84 12-37 (39)
49 3s4r_A Vimentin; alpha-helix, 27.8 1.2E+02 0.0042 19.3 5.8 32 36-67 11-44 (93)
50 3w03_C DNA repair protein XRCC 27.6 1.2E+02 0.0041 22.1 5.2 30 56-85 148-177 (184)
51 3c3f_A Alpha/beta peptide with 27.0 77 0.0026 16.8 4.0 25 62-86 3-27 (34)
52 3vkg_A Dynein heavy chain, cyt 26.4 3.7E+02 0.013 28.0 9.9 49 34-82 2014-2064(3245)
53 1q08_A Zn(II)-responsive regul 26.4 1.2E+02 0.004 18.7 7.1 54 30-84 16-70 (99)
54 3ra3_B P2F; coiled coil domain 26.1 68 0.0023 15.9 3.1 11 74-84 7-17 (28)
55 2wh0_Q Pkcev3, protein kinase 26.1 51 0.0018 16.7 2.1 15 34-48 13-27 (31)
56 2l5g_B Putative uncharacterize 25.9 84 0.0029 17.5 3.2 21 3-23 15-35 (42)
57 3q4f_C DNA repair protein XRCC 25.5 87 0.003 22.9 4.1 24 59-82 160-183 (186)
58 1nkp_B MAX protein, MYC proto- 25.2 1.2E+02 0.0042 18.5 5.9 27 58-84 52-78 (83)
59 3v1a_A Computational design, M 24.5 1.1E+02 0.0036 17.5 3.9 38 39-76 6-43 (48)
60 1p9i_A Cortexillin I/GCN4 hybr 22.8 85 0.0029 15.9 3.2 19 68-86 7-25 (31)
61 1am9_A Srebp-1A, protein (ster 22.6 1.4E+02 0.0049 18.3 5.1 34 54-87 41-77 (82)
62 3ghg_A Fibrinogen alpha chain; 21.9 2.4E+02 0.0081 24.1 6.6 12 5-16 65-76 (562)
63 2bni_A General control protein 21.9 1E+02 0.0035 16.3 3.8 23 63-85 4-26 (34)
64 2jo8_A Serine/threonine-protei 20.6 1.1E+02 0.0037 17.7 3.1 11 28-38 7-17 (51)
No 1
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.27 E-value=1.5 Score=28.32 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 31 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRS 81 (135)
Q Consensus 31 Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~ 81 (135)
+|++=|.+||..+..++..| .++..+|+.|+.|...|..++..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999987 56777788888887776666655433
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=87.17 E-value=3.1 Score=25.26 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
|..+.|.||.+.+ ..|..++..|..+|..|..++....
T Consensus 20 AArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 20 AARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888887665 8889999999999999998886654
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=84.31 E-value=4.9 Score=24.17 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
|..+-|.||.+.+ ..|..++..|..+|..|..++.....
T Consensus 13 AA~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 13 AAAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566688887765 88889999999999999998876544
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=83.50 E-value=5 Score=23.63 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
|-.+-|.||-.. ++.|..++..|..+|..|..++....
T Consensus 12 sA~rSR~RKk~~----~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 12 AARESRRKKKEY----VKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557777644 48889999999999999999886654
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.58 E-value=5.7 Score=23.61 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
|..+-|.||-+.+ +.|..++..|..+|..|..++.....
T Consensus 12 AA~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 12 AASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788887655 78888899999999999888876554
No 6
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=81.55 E-value=6.4 Score=23.50 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
|..+-|.||.+.+ ..|..++..|..+|..|..++.....
T Consensus 12 AA~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 12 AASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788887665 88999999999999999999876654
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=80.88 E-value=2.9 Score=26.50 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRS 81 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~ 81 (135)
+++.++|.+|..|...|+.||..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888887764
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.33 E-value=9.4 Score=22.96 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
|..+-|.+|-.. ++.+..++..|..+|..|..++.....
T Consensus 13 AA~R~R~KKk~~----~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 13 AATRYRQKKRAE----QEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667666554 477778888888888888888766554
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=75.45 E-value=22 Score=26.22 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 045191 1 YYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKEL-KQLENRLERGITRIRSKK 54 (135)
Q Consensus 1 ~w~~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL-~~LE~~Le~~l~~IR~rK 54 (135)
||+..+..++.+...++.+.--+... =++| ..||.+|+.+=+++|.-+
T Consensus 14 ywk~~~~~~~q~~~~le~El~EFqes------SrELE~ELE~eL~~~Ek~~~~L~ 62 (189)
T 2v71_A 14 YWKELSMKYKQSFQEARDELVEFQEG------SRELEAELEAQLVQAEQRNRDLQ 62 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888887777777666555431 1222 234555555545555443
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.25 E-value=8.8 Score=21.56 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
+=+...+..|..++..|+.||..|++.+
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3455667788888888999999988765
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.34 E-value=48 Score=30.38 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 63 EFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 63 ~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+.|+.|+..|.++|..|+.++.+.+.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999999887763
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.91 E-value=10 Score=22.18 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
+.|..++..|+.|+..|.+++..|+.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778888888888888888777663
No 13
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.39 E-value=16 Score=22.86 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 27 SLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 27 dL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
.+++++. +..|+..|......||.+... |..+.+.......+...|+.++.
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 888999999988888876543 57777777777777778877774
No 14
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=65.23 E-value=13 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 52 SKKHEMLLAEIEFLQKREIELENESV 77 (135)
Q Consensus 52 ~rK~~ll~~qi~~l~kk~~~l~een~ 77 (135)
.||+.-....|+.++++...|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 36777777777777777666665543
No 15
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.48 E-value=26 Score=21.63 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 45 RGITRIRSKKHEML---LAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 45 ~~l~~IR~rK~~ll---~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
.|-...|.||.+-| ..++..+......+..+|..|+..+....
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788887755 33555555555556677777777665543
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=58.94 E-value=42 Score=23.23 Aligned_cols=53 Identities=26% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 36 LKQLENRLERGITRIRSKKHEMLLA--EIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 36 L~~LE~~Le~~l~~IR~rK~~ll~~--qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
...|+.+++.--+.|=+-|.++... +++.++++...+.+++..|..++...++
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555445555555555433 3345555556666666666666555443
No 17
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.26 E-value=23 Score=23.51 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 60 AEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 60 ~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+++..+++++..|..+|..|+.+++..+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888876655
No 18
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=52.98 E-value=16 Score=24.30 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 045191 53 KKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERF 89 (135)
Q Consensus 53 rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~~ 89 (135)
.|...+..+++.|..+++.|.+.-..+...+.....+
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788889999999999988888888887666543
No 19
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=52.75 E-value=37 Score=22.69 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=28.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLERGITRIRSKKHEML 58 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll 58 (135)
-++++||.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 389999999999999999998888887777654
No 20
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=51.72 E-value=29 Score=19.29 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 045191 29 SSLTVKELKQLENRLERGITR 49 (135)
Q Consensus 29 ~~Ls~~EL~~LE~~Le~~l~~ 49 (135)
+++|.+||..||..|..--++
T Consensus 15 egfspeelaaleselqalekk 35 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKK 35 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 369999999999887654333
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.23 E-value=1e+02 Score=25.30 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
+.+....+++..+++...++++...++.++
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHH
Confidence 333444444333333333344444444433
No 22
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.59 E-value=47 Score=21.30 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMERF 89 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~~ 89 (135)
|..+=|.++-.. ...+..++..|..+|..|+.+|......
T Consensus 26 AarrSR~krk~r----~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 26 AVRKSRDKAKMR----NLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444333 2566778888899999999988776553
No 23
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=50.23 E-value=17 Score=22.02 Aligned_cols=43 Identities=9% Similarity=0.181 Sum_probs=33.4
Q ss_pred CCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKE----LKQLENRLERGITRIRSKKHEMLLAEIEFLQKR 68 (135)
Q Consensus 26 edL~~Ls~~E----L~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk 68 (135)
.+...++.++ +..|++.+..+.....--+...+.++|..|+++
T Consensus 12 ~~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 12 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp TSSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3455566333 677889999999999988888999999888765
No 24
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=48.69 E-value=56 Score=21.65 Aligned_cols=58 Identities=28% Similarity=0.309 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELK----QLENRLERGI---TRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 26 edL~~Ls~~EL~----~LE~~Le~~l---~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
|.|.+||-.||. .||..++..- .+.|..- .-.-.+|..|..++..|..+|..|..+-+
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~-~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLES-KRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778877775 4777666652 2223321 22357888899999999999999876653
No 25
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=48.30 E-value=44 Score=24.66 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
+-+.|..+|.+++ +.+++|...|.++-..|...+.....
T Consensus 9 ~~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~~ 47 (190)
T 3thf_A 9 PTNLIKQKMDELI----KHLNQKIVSLKREQQTISEECSANDR 47 (190)
T ss_dssp -CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999887 88999999999988888888766544
No 26
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.84 E-value=66 Score=21.92 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
++|++++..+=.....+-..+..+ ..++..++..+..+...+......|..++...+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999887765554443333222 3577788888888888888887788777765444
No 27
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=46.48 E-value=38 Score=24.52 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 6 SAKLRQQIQMLQNSNRHLMGDSLSS--LTVKELKQLENRLERGITRIRSKKHE 56 (135)
Q Consensus 6 ~~~L~~~~~~L~~~~R~l~GedL~~--Ls~~EL~~LE~~Le~~l~~IR~rK~~ 56 (135)
|.+.+.-+..|+.++|.-.+.|+++ ..+++|..+.+.++ .+..+|-+|.=
T Consensus 82 Y~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~-~L~~~Ri~KIv 133 (171)
T 3anw_B 82 YERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLR-DLKLIRFNKIL 133 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 5677788888999999888778665 33467766666554 45566666643
No 28
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.38 E-value=52 Score=20.62 Aligned_cols=39 Identities=23% Similarity=0.292 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045191 46 GITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEMER 88 (135)
Q Consensus 46 ~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~ 88 (135)
|..+=|.++-..- ..+..++..|..+|..|+.++.....
T Consensus 26 AakrSR~krk~r~----~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 26 AVRKSRDKAKMRN----LETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544333 56678888899999999999877655
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.26 E-value=56 Score=20.98 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
.++..+|..|++++..+..++..|..++...
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999988888888888777543
No 30
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=45.87 E-value=47 Score=19.98 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGITRIRS--KKHEMLLAEIEFLQKREIELENESVCLR 80 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~--rK~~ll~~qi~~l~kk~~~l~een~~L~ 80 (135)
..++.|-..+-+-|-.|=.+|-. +=+.-+.+++.-+++++..|+.+|..|+
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 57788888777777777666643 2233456788888899999999998886
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.85 E-value=49 Score=19.63 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 54 KHEMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 54 K~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
+.+-+..+...|+.++..|..++..|+.-+.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667777788888888888888876654
No 32
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.60 E-value=43 Score=18.24 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045191 59 LAEIEFLQKREIELENESVCLR 80 (135)
Q Consensus 59 ~~qi~~l~kk~~~l~een~~L~ 80 (135)
.+||..++.|...|.++.-.|.
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888777765554
No 33
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.31 E-value=40 Score=17.84 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 63 EFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 63 ~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
..|..|+..|..+|..|..++....
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777777777777777765443
No 34
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=40.93 E-value=53 Score=19.12 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 63 EFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 63 ~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
+.|-+++..|..+|..|+.++....
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 3445566667778888888886544
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.33 E-value=1.1e+02 Score=22.73 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 045191 32 TVKELKQLENRLERGITRIRSKKHEML--LAEIEFLQKREIELE 73 (135)
Q Consensus 32 s~~EL~~LE~~Le~~l~~IR~rK~~ll--~~qi~~l~kk~~~l~ 73 (135)
+.+|+..|.+.++..-.+|...-.+++ +++++.++.....+.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988888777666644 566655555444333
No 36
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.01 E-value=94 Score=21.48 Aligned_cols=50 Identities=14% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 9 LRQQIQMLQNSNRHLMG-----DSLSSLTVKELKQLENRLERGITRIRSKKHEML 58 (135)
Q Consensus 9 L~~~~~~L~~~~R~l~G-----edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll 58 (135)
|.++-+....+-+..+. -+++++|.++|+.+=+.|-..+..+=+-|+.+-
T Consensus 31 l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444444444444443 489999999999999999999988888777664
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.01 E-value=1.3e+02 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSK 82 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~ 82 (135)
+-+..+|+.++++...+.++-..+..+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555665555555544444433333
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.02 E-value=2e+02 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 60 AEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 60 ~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
.+++..+++...+.+++..++.++....
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555554443
No 39
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.01 E-value=94 Score=19.70 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 53 KKHEMLLAEIEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 53 rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
.|.+-..+.|.-|+-.+..|.++|..|..+..+.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777778888888888887777663
No 40
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.55 E-value=76 Score=18.45 Aligned_cols=29 Identities=28% Similarity=0.138 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 55 HEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 55 ~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
...+..+...|+.++..|.+++..|...+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666677777777777777766554
No 41
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=32.29 E-value=60 Score=17.23 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 62 IEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 62 i~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
+..|..|+..|-.+|..|..++...
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3556667777777777776666443
No 42
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.53 E-value=96 Score=23.77 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=3.3
Q ss_pred ccccCC
Q 045191 115 AIIEGG 120 (135)
Q Consensus 115 ~~l~~~ 120 (135)
..|.|+
T Consensus 133 e~LkPG 138 (251)
T 3m9b_A 133 ASLKKG 138 (251)
T ss_dssp TTSCSS
T ss_pred HHCCCC
Confidence 455565
No 43
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=30.49 E-value=1.6e+02 Score=21.45 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=28.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLERGITRIRSKKHEML 58 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll 58 (135)
-+|++||..+|+.+=+.|-..+..+=+-|+.+-
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 388999999999999999999988888887764
No 44
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.04 E-value=1.4e+02 Score=20.47 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 4 QESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 4 ~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 83 (135)
.++-+++.+++.|+..+..+ -+|+..|=..|..+-. |.+-...+++.++++...|+.++..|..++
T Consensus 68 dEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~-----k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQI-----KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666665444433 3344444444433322 223345566667777777777777666655
Q ss_pred H
Q 045191 84 A 84 (135)
Q Consensus 84 ~ 84 (135)
.
T Consensus 134 ~ 134 (138)
T 3hnw_A 134 N 134 (138)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.60 E-value=1.4e+02 Score=20.29 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 30 SLTVKELKQLENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
++|++++..+=.....+-..+.. -..++..++..+.++...+...-..|..++...+
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888775544333222222 2357777888888888888777777777765443
No 46
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.56 E-value=59 Score=15.97 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045191 5 ESAKLRQQIQMLQNSNR 21 (135)
Q Consensus 5 e~~~L~~~~~~L~~~~R 21 (135)
+++.|++.+..|++.+|
T Consensus 9 eledlqerlrklrkklr 25 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44445555555544443
No 47
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=28.18 E-value=31 Score=18.51 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 60 AEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 60 ~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
+.|+.+++|...++.+.-.+..++..
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777666555555433
No 48
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=27.91 E-value=78 Score=17.13 Aligned_cols=26 Identities=12% Similarity=0.042 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 59 LAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 59 ~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
.+..-..-.|++.|+.+|..|..++.
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455788889999999988763
No 49
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=27.81 E-value=1.2e+02 Score=19.33 Aligned_cols=32 Identities=34% Similarity=0.612 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 045191 36 LKQLENRLERGITRIRS--KKHEMLLAEIEFLQK 67 (135)
Q Consensus 36 L~~LE~~Le~~l~~IR~--rK~~ll~~qi~~l~k 67 (135)
++.|=..+-.-+.+||. .-+..+..+|..++.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444555553 223344444444433
No 50
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.55 E-value=1.2e+02 Score=22.13 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 56 EMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 56 ~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
...++.+..|+.++..|+++|.+|..+...
T Consensus 148 d~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 148 CYCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788889999999999999999887654
No 51
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.03 E-value=77 Score=16.79 Aligned_cols=25 Identities=4% Similarity=0.069 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 62 IEFLQKREIELENESVCLRSKIAEM 86 (135)
Q Consensus 62 i~~l~kk~~~l~een~~L~~~~~~~ 86 (135)
+..|..|+..|-.+|..|..+++..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455566666667777666665443
No 52
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.41 E-value=3.7e+02 Score=27.99 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 34 KELKQLENRLERGITRIRSKKHEM--LLAEIEFLQKREIELENESVCLRSK 82 (135)
Q Consensus 34 ~EL~~LE~~Le~~l~~IR~rK~~l--l~~qi~~l~kk~~~l~een~~L~~~ 82 (135)
++|..+|.+|..+..+....+.++ +.+.+..|+.+......+...|..+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888877777665543 4555555655544444444444333
No 53
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.38 E-value=1.2e+02 Score=18.70 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKELKQLENRLERGIT-RIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 30 ~Ls~~EL~~LE~~Le~~l~-~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
+||++|+..+=.....+-. .+ ..-..++..++..+.++...+...-..|...+.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899998887543321111 11 122356777777777777777777666666554
No 54
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.14 E-value=68 Score=15.87 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 045191 74 NESVCLRSKIA 84 (135)
Q Consensus 74 een~~L~~~~~ 84 (135)
..|.+|..+++
T Consensus 7 qknarlkqeia 17 (28)
T 3ra3_B 7 QKNARLKQEIA 17 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhhHHHHHHH
Confidence 33444444443
No 55
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=26.07 E-value=51 Score=16.70 Aligned_cols=15 Identities=33% Similarity=0.782 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 045191 34 KELKQLENRLERGIT 48 (135)
Q Consensus 34 ~EL~~LE~~Le~~l~ 48 (135)
.|+..||.++.++|+
T Consensus 13 qeikelennirkals 27 (31)
T 2wh0_Q 13 QEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHhc
Confidence 567777877777664
No 56
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.89 E-value=84 Score=17.49 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 045191 3 QQESAKLRQQIQMLQNSNRHL 23 (135)
Q Consensus 3 ~~e~~~L~~~~~~L~~~~R~l 23 (135)
+.|+++-.++|..|+..++.+
T Consensus 15 drEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888888877764
No 57
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.47 E-value=87 Score=22.95 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 59 LAEIEFLQKREIELENESVCLRSK 82 (135)
Q Consensus 59 ~~qi~~l~kk~~~l~een~~L~~~ 82 (135)
..+|.+++.+...|+++|.+|..+
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999988754
No 58
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=25.15 E-value=1.2e+02 Score=18.49 Aligned_cols=27 Identities=11% Similarity=0.127 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 58 LLAEIEFLQKREIELENESVCLRSKIA 84 (135)
Q Consensus 58 l~~qi~~l~kk~~~l~een~~L~~~~~ 84 (135)
+..++..++.....|..+|..|..++.
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666665553
No 59
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=24.46 E-value=1.1e+02 Score=17.52 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 39 LENRLERGITRIRSKKHEMLLAEIEFLQKREIELENES 76 (135)
Q Consensus 39 LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een 76 (135)
|++|...-=.-|+..|..-=.+++.+|.+..+.|..+-
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555666666666666555543
No 60
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.84 E-value=85 Score=15.85 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045191 68 REIELENESVCLRSKIAEM 86 (135)
Q Consensus 68 k~~~l~een~~L~~~~~~~ 86 (135)
-...++.+|+.|..++++.
T Consensus 7 llasleaenkqlkakveel 25 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777888888777653
No 61
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=22.60 E-value=1.4e+02 Score=18.33 Aligned_cols=34 Identities=29% Similarity=0.492 Sum_probs=22.5
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045191 54 KHEMLLAE---IEFLQKREIELENESVCLRSKIAEME 87 (135)
Q Consensus 54 K~~ll~~q---i~~l~kk~~~l~een~~L~~~~~~~~ 87 (135)
|..++..- |..|+..+..|.+++..|+..+....
T Consensus 41 Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 41 KSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444333 45566777888888888888776544
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.93 E-value=2.4e+02 Score=24.10 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 045191 5 ESAKLRQQIQML 16 (135)
Q Consensus 5 e~~~L~~~~~~L 16 (135)
-+.+|+.+++.+
T Consensus 65 rINELKnqLEdl 76 (562)
T 3ghg_A 65 RINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHH
Confidence 345555555444
No 63
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.87 E-value=1e+02 Score=16.34 Aligned_cols=23 Identities=9% Similarity=0.175 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045191 63 EFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 63 ~~l~kk~~~l~een~~L~~~~~~ 85 (135)
..|..|+..|-.+|..|..+++.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHH
Confidence 44555666666666666655543
No 64
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.61 E-value=1.1e+02 Score=17.72 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=7.2
Q ss_pred CCCCCHHHHHH
Q 045191 28 LSSLTVKELKQ 38 (135)
Q Consensus 28 L~~Ls~~EL~~ 38 (135)
|..+|++||.+
T Consensus 7 Lk~ls~eEL~~ 17 (51)
T 2jo8_A 7 LKSWTVEDLQK 17 (51)
T ss_dssp GGGSCHHHHHH
T ss_pred HHhCCHHHHHH
Confidence 34568888765
Done!