Query 045191
Match_columns 135
No_of_seqs 134 out of 1329
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 18:53:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045191.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045191hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 58.1 6.7 0.00049 24.4 4.2 58 55-112 3-63 (101)
2 d1e52a_ a.2.9.1 (A:) C-termina 48.3 12 0.00087 20.7 3.7 40 30-69 9-52 (56)
3 d1r8ea1 a.6.1.3 (A:3-120) Tran 35.4 42 0.0031 20.2 6.5 10 30-39 61-70 (118)
4 d1t27a_ d.129.3.4 (A:) Phoshat 33.4 19 0.0014 26.2 3.7 40 14-53 219-260 (269)
5 d1siga_ a.177.1.1 (A:) Sigma70 32.6 26 0.0019 24.8 4.5 56 3-60 215-270 (334)
6 d3d19a2 a.29.13.1 (A:145-274) 32.0 56 0.0041 20.6 8.2 58 5-62 39-96 (130)
7 d1nkpb_ a.38.1.1 (B:) Max prot 30.2 45 0.0033 19.0 4.6 23 61-83 55-77 (83)
8 d1uklc_ a.38.1.1 (C:) SREBP-2 29.8 38 0.0027 18.4 4.0 23 61-83 34-56 (61)
9 d2zjrv1 a.2.2.1 (V:1-66) Ribos 26.4 43 0.0031 18.6 3.8 29 26-54 4-32 (66)
10 d1bjta_ e.11.1.1 (A:) DNA topo 24.9 21 0.0016 29.3 3.0 12 57-68 736-747 (760)
11 d1nkpa_ a.38.1.1 (A:) Myc prot 21.7 71 0.0051 18.3 4.6 24 62-85 61-84 (88)
12 d1fxkc_ a.2.5.1 (C:) Prefoldin 20.2 90 0.0065 18.9 5.0 45 40-85 83-127 (133)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.12 E-value=6.7 Score=24.43 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hhhcccccccchhhhhccccCCC
Q 045191 55 HEMLLAEIEFLQKREIELENESVCLRSKIAEMERF---QQANMVTGQELNAIHALASRNFF 112 (135)
Q Consensus 55 ~~ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 112 (135)
.+-+..+++.|..+++.|.+.-..+...+.....+ ..+.+++..+..++..|.....|
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~tvi 63 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVM 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccceEE
Confidence 35678888999999998888887777777665543 33444443333334444444333
No 2
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=48.32 E-value=12 Score=20.74 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=32.7
Q ss_pred CCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 30 SLTVKE----LKQLENRLERGITRIRSKKHEMLLAEIEFLQKRE 69 (135)
Q Consensus 30 ~Ls~~E----L~~LE~~Le~~l~~IR~rK~~ll~~qi~~l~kk~ 69 (135)
++|.++ +..||+++..+.....--|.-.+.++|..+++..
T Consensus 9 ~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l 52 (56)
T d1e52a_ 9 DMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 52 (56)
T ss_dssp CSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 345444 7889999999999999999889999998888764
No 3
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=35.43 E-value=42 Score=20.16 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=6.5
Q ss_pred CCCHHHHHHH
Q 045191 30 SLTVKELKQL 39 (135)
Q Consensus 30 ~Ls~~EL~~L 39 (135)
++|++++..+
T Consensus 61 g~sl~eIk~~ 70 (118)
T d1r8ea1 61 GTPLEEMKKA 70 (118)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 3777777654
No 4
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.42 E-value=19 Score=26.18 Aligned_cols=40 Identities=25% Similarity=0.542 Sum_probs=31.6
Q ss_pred HHHHHHhhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045191 14 QMLQNSNRHLMG--DSLSSLTVKELKQLENRLERGITRIRSK 53 (135)
Q Consensus 14 ~~L~~~~R~l~G--edL~~Ls~~EL~~LE~~Le~~l~~IR~r 53 (135)
+.+-.-+|+... +.=-+||+++++.+|.+....|.++|..
T Consensus 219 ~~~l~~HRq~fcW~DeW~gmTmedIR~~E~e~q~~L~~~~~~ 260 (269)
T d1t27a_ 219 RLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQK 260 (269)
T ss_dssp HHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 445667777664 4455799999999999999999988863
No 5
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=32.57 E-value=26 Score=24.82 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 3 QQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLA 60 (135)
Q Consensus 3 ~~e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~ 60 (135)
...+...+..+...+..++.+. .-.++++.++..+-..+..+-...+..|.+++..
T Consensus 215 ~~~l~~~~~~I~~~q~kl~~ie--~~~gl~~~elk~i~~~i~~ge~~~~~ak~~~~~~ 270 (334)
T d1siga_ 215 SEKLHDVSEEVHRALQKLQQIE--EETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA 270 (334)
T ss_dssp HHHGGGTHHHHHHHHHHHHHHH--HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHhhccchHHHHHHh
Confidence 3334444556666666665553 4456999999999999999999999999887753
No 6
>d3d19a2 a.29.13.1 (A:145-274) Uncharacterized protein BCE_G9241_1042 {Bacillus cereus [TaxId: 1396]}
Probab=32.01 E-value=56 Score=20.55 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 5 ESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQLENRLERGITRIRSKKHEMLLAEI 62 (135)
Q Consensus 5 e~~~L~~~~~~L~~~~R~l~GedL~~Ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi 62 (135)
+.....+..+.|-..-+.+.|--....++..+.++-++...++..+|.=|.++....+
T Consensus 39 ~A~~f~~~Fe~Ll~~a~~l~~~~~~~~~~~~l~~ln~~~~~~~~~~~~FK~~~~~~~l 96 (130)
T d3d19a2 39 TARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIE 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456667777777888887888889999999999999999999999888775444
No 7
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.15 E-value=45 Score=18.96 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045191 61 EIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 61 qi~~l~kk~~~l~een~~L~~~~ 83 (135)
++..+......+..++..|..++
T Consensus 55 ~~~~l~~~~~~l~~~~~~L~~~l 77 (83)
T d1nkpb_ 55 KNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555554
No 8
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.79 E-value=38 Score=18.37 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045191 61 EIEFLQKREIELENESVCLRSKI 83 (135)
Q Consensus 61 qi~~l~kk~~~l~een~~L~~~~ 83 (135)
-|..|++++..|.+++..|+...
T Consensus 34 YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 34 YIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888887776554
No 9
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=26.45 E-value=43 Score=18.62 Aligned_cols=29 Identities=7% Similarity=0.227 Sum_probs=24.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045191 26 DSLSSLTVKELKQLENRLERGITRIRSKK 54 (135)
Q Consensus 26 edL~~Ls~~EL~~LE~~Le~~l~~IR~rK 54 (135)
.||-++|.+||...-..+...+-..|..+
T Consensus 4 ~elr~~s~~eL~~~l~~lk~elf~LRfq~ 32 (66)
T d2zjrv1 4 SEMRNLQATDFAKEIDARKKELMELRFQA 32 (66)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999988888888655
No 10
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.95 E-value=21 Score=29.35 Aligned_cols=12 Identities=0% Similarity=0.135 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 045191 57 MLLAEIEFLQKR 68 (135)
Q Consensus 57 ll~~qi~~l~kk 68 (135)
++.+.++.++++
T Consensus 736 lW~~DL~~l~~~ 747 (760)
T d1bjta_ 736 IWNTDLKAFEVG 747 (760)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 11
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.69 E-value=71 Score=18.25 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 62 IEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 62 i~~l~kk~~~l~een~~L~~~~~~ 85 (135)
+..+..+...+..++..|..++..
T Consensus 61 ~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 61 EQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555433
No 12
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.24 E-value=90 Score=18.91 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045191 40 ENRLERGITRIRSKKHEMLLAEIEFLQKREIELENESVCLRSKIAE 85 (135)
Q Consensus 40 E~~Le~~l~~IR~rK~~ll~~qi~~l~kk~~~l~een~~L~~~~~~ 85 (135)
|..++.|+..+..|+. .+...++.+.+....+...-..+...+.+
T Consensus 83 E~~~~eA~~~l~~ri~-~l~~~~~~l~~~~~~~~~~i~~l~~~~~~ 127 (133)
T d1fxkc_ 83 KKNFEDAMESIKSQKN-ELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp EEEHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677776666654 45567777777766666666666655544
Done!