BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045192
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B1G|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
Length = 531
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE+ L+VDFAN+++G G G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGXLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R++ D D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382
>pdb|4B1J|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-hpd
Length = 531
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE+ L+VDFAN+++G G G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R++ D D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382
>pdb|4B1H|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-ribose
Length = 531
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE+ L+VDFAN+++G G G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R++ D D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382
>pdb|4A0D|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
pdb|4B1I|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Oa-adp-hpd
Length = 531
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE+ L+VDFAN+++G G G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 311
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R++ D D + R
Sbjct: 312 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 371
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382
>pdb|4FC2|A Chain A, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|B Chain B, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|C Chain C, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|D Chain D, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
Length = 521
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE L+VDFAN+++G G G V EE
Sbjct: 252 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGXLQVDFANRFVGGGVTGAGLVQEE 311
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R+A D D + R
Sbjct: 312 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 371
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 372 RCTEIVAIDAL 382
>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase
pdb|3UEL|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|B Chain B, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|C Chain C, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
Length = 588
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE L+VDFAN+++G G G V EE
Sbjct: 309 FTRQSLEDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEE 368
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R+A D D + R
Sbjct: 369 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 428
Query: 122 RKTRIIAIDAL 132
T I+AIDAL
Sbjct: 429 CCTEIVAIDAL 439
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 17 VLPLCAFEVRSVGFIEDQSAD----ALEVDFANKYIGRGALHRGCVHEEIRFMINPELIA 72
V L A ++++V +D+ + L+VDFAN IG G L G V EEIRF + PE++
Sbjct: 228 VDKLKAIKLKNVQLTDDKLIEDFPGTLQVDFANCDIGGGILGNGLVQEEIRFCVCPEMLV 287
Query: 73 GML-FLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDA 131
+L F SM NE I + G +++ DY+GY++SFRF K +T I+AIDA
Sbjct: 288 SLLVFDQSMEANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRNNPQT-ILAIDA 346
Query: 132 LCW 134
LC+
Sbjct: 347 LCF 349
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 17 VLPLCAFEVRSVGFIEDQSAD----ALEVDFANKYIGRGALHRGCVHEEIRFMINPELIA 72
V L A ++++V +D+ + L+VDFAN IG G L G V EEIRF + PE++
Sbjct: 228 VDKLKAIKLKNVQLTDDKLIEDFPGTLQVDFANCDIGGGILGNGLVQEEIRFCVCPEMLV 287
Query: 73 GML-FLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDA 131
+L F SM NE I + G +++ DY+GY++SFRF K +T I+AIDA
Sbjct: 288 SLLVFDQSMEANEVIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQKRTNPQT-ILAIDA 346
Query: 132 LCW 134
LC+
Sbjct: 347 LCF 349
>pdb|2A4N|A Chain A, Crystal Structure Of Aminoglycoside
6'-N-Acetyltransferase Complexed With Coenzyme A
pdb|2A4N|B Chain B, Crystal Structure Of Aminoglycoside
6'-N-Acetyltransferase Complexed With Coenzyme A
Length = 182
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 26 RSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEA 85
R+ ++DQ +D L + + +Y A EE+ M+NPE IA +A++ +E
Sbjct: 8 RNNPVLKDQLSDLLRLTWPEEYGDSSA-------EEVEEMMNPERIA----VAAVDQDEL 56
Query: 86 IEIVGA 91
+ +GA
Sbjct: 57 VGFIGA 62
>pdb|1B87|A Chain A, Crystal Structure Of An Aminoglycoside
6'-N-Acetyltransferase
Length = 181
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 26 RSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEA 85
R+ ++DQ +D L + + +Y A EE+ M+NPE IA +A++ +E
Sbjct: 8 RNNPVLKDQLSDLLRLTWPEEYGDSSA-------EEVEEMMNPERIA----VAAVDQDEL 56
Query: 86 IEIVGA 91
+ +GA
Sbjct: 57 VGFIGA 62
>pdb|1N71|A Chain A, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|B Chain B, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|C Chain C, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
pdb|1N71|D Chain D, Crystal Structure Of Aminoglycoside 6'-Acetyltransferase
Type Ii In Complex With Coenzyme A
Length = 180
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 26 RSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEA 85
R+ ++DQ +D L + + +Y A EE+ M+NPE IA +A++ +E
Sbjct: 8 RNNPVLKDQLSDLLRLTWPEEYGDSSA-------EEVEEMMNPERIA----VAAVDQDEL 56
Query: 86 IEIVGA 91
+ +GA
Sbjct: 57 VGFIGA 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,813,878
Number of Sequences: 62578
Number of extensions: 185474
Number of successful extensions: 437
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 11
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)