BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045192
(162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SKB3|PARG1_ARATH Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1
PE=1 SV=2
Length = 548
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/150 (68%), Positives = 115/150 (76%)
Query: 4 FTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIR 63
T+ P+ADFWSKS + LCAF+V S G IEDQ +ALEVDFANKY+G G+L RGCV EEIR
Sbjct: 217 ITAAPDADFWSKSDVSLCAFKVHSFGLIEDQPDNALEVDFANKYLGGGSLSRGCVQEEIR 276
Query: 64 FMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRK 123
FMINPELIAGMLFL M DNEAIEIVGAERF Y GY SSFRFAG+ DKK D F RR+
Sbjct: 277 FMINPELIAGMLFLPRMDDNEAIEIVGAERFSCYTGYASSFRFAGEYIDKKAMDPFKRRR 336
Query: 124 TRIIAIDALCWPGMKQYALKYLLRCVKFAL 153
TRI+AIDALC P M+ + LLR + AL
Sbjct: 337 TRIVAIDALCTPKMRHFKDICLLREINKAL 366
>sp|Q8VYA1|PARG2_ARATH Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana
GN=PARG2 PE=2 SV=1
Length = 522
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 106/152 (69%)
Query: 1 HPLFTSYPEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHE 60
HP F SYP+AD W+ SV PLC+ E+ + G IEDQ +ALEVDFA++Y G L + E
Sbjct: 225 HPHFVSYPKADSWANSVTPLCSIEIHTSGAIEDQPCEALEVDFADEYFGGLTLSYDTLQE 284
Query: 61 EIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFG 120
EIRF+INPELIAGM+FL M NEAIEIVG ERF Y GY SF++AGD D K D F
Sbjct: 285 EIRFVINPELIAGMIFLPRMDANEAIEIVGVERFSGYTGYGPSFQYAGDYTDNKDLDIFR 344
Query: 121 RRKTRIIAIDALCWPGMKQYALKYLLRCVKFA 152
RRKTR+IAIDA+ PGM QY L L+R V A
Sbjct: 345 RRKTRVIAIDAMPDPGMGQYKLDALIREVNKA 376
>sp|O46043|PARG_DROME Poly(ADP-ribose) glycohydrolase OS=Drosophila melanogaster GN=Parg
PE=1 SV=2
Length = 768
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 79/122 (64%), Gaps = 2/122 (1%)
Query: 13 WSKSVLPL--CAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPEL 70
WS+S PL V + G IED+ L+VDFANKY+G G L GCV EEIRF+I PEL
Sbjct: 336 WSQSAAPLGDVPLHVDAEGTIEDEGIGLLQVDFANKYLGGGVLGHGCVQEEIRFVICPEL 395
Query: 71 IAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAID 130
+ G LF + EA+ ++GAER+ +Y GY SF ++G+ D DS GRR+T I+AID
Sbjct: 396 LVGKLFTECLRPFEALVMLGAERYSNYTGYAGSFEWSGNFEDSTPRDSSGRRQTAIVAID 455
Query: 131 AL 132
AL
Sbjct: 456 AL 457
>sp|O88622|PARG_MOUSE Poly(ADP-ribose) glycohydrolase OS=Mus musculus GN=Parg PE=1 SV=2
Length = 969
Score = 103 bits (258), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE L+VDFAN+++G G G V EE
Sbjct: 690 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEE 749
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R+A D D + R
Sbjct: 750 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 809
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 810 RCTEIVAIDAL 820
>sp|Q86W56|PARG_HUMAN Poly(ADP-ribose) glycohydrolase OS=Homo sapiens GN=PARG PE=1 SV=1
Length = 976
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE+ L+VDFAN+++G G G V EE
Sbjct: 697 FTRQSLEDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEE 756
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R++ D D + R
Sbjct: 757 IRFLINPELIISRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQR 816
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 817 RCTEIVAIDAL 827
>sp|O02776|PARG_BOVIN Poly(ADP-ribose) glycohydrolase OS=Bos taurus GN=PARG PE=1 SV=1
Length = 977
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + L V G IE L+VDFAN+++G G G V EE
Sbjct: 698 FTRQSLEDFPEWERCEKLLTRLHVTYEGTIEGNGQGMLQVDFANRFVGGGVTSAGLVQEE 757
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R+A D+ D + R
Sbjct: 758 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDRSERDDWQR 817
Query: 122 RKTRIIAIDAL 132
R T I+AIDAL
Sbjct: 818 RTTEIVAIDAL 828
>sp|Q9QYM2|PARG_RAT Poly(ADP-ribose) glycohydrolase OS=Rattus norvegicus GN=Parg PE=1
SV=1
Length = 972
Score = 99.8 bits (247), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/131 (41%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 4 FTSYPEADF--WSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEE 61
FT DF W + PL V G IE L+VDFAN+++G G G V EE
Sbjct: 693 FTRQSLEDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEE 752
Query: 62 IRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGR 121
IRF+INPELI LF + NE + I G E++ +Y GY ++R+A D D + R
Sbjct: 753 IRFLINPELIVSRLFTEVLDHNECLIITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQR 812
Query: 122 RKTRIIAIDAL 132
T I+AIDAL
Sbjct: 813 CCTEIVAIDAL 823
>sp|Q867X0|PME3_CAEEL Poly(ADP-ribose) glycohydrolase pme-3 OS=Caenorhabditis elegans
GN=pme-3 PE=2 SV=1
Length = 781
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 30 FIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIV 89
IED +A +VDFAN+++G G L+ G V EEIRF++ PE++ GML M EAI IV
Sbjct: 525 LIED-TALCTQVDFANEHLGGGVLNHGSVQEEIRFLMCPEMMVGMLLCEKMKQLEAISIV 583
Query: 90 GAERFCDYKGYTSSFRFAG-DPADKKHF-----DSFGRRKTRIIAIDALCWPGMK 138
GA F Y GY + ++A P + D FGR + IAIDA+ + G K
Sbjct: 584 GAYVFSSYTGYGHTLKWAELQPNHSRQNTNEFRDRFGRLRVETIAIDAILFKGSK 638
>sp|Q9N5L4|PME4_CAEEL Poly(ADP-ribose) glycohydrolase pme-4 OS=Caenorhabditis elegans
GN=pme-4 PE=2 SV=2
Length = 485
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 33 DQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAE 92
+++A ++DFANK +G G L G V EEIRFM+ PE++ +L D EAI IVGA
Sbjct: 244 EETALCTQIDFANKRLGGGVLKGGAVQEEIRFMMCPEMMVAILLNDVTQDLEAISIVGAY 303
Query: 93 RFCDYKGYTSSFRFAG-----DPADKKHF-DSFGRRKTRIIAIDAL 132
F Y GY+++ ++A + F D FGR +T +AIDA+
Sbjct: 304 VFSSYTGYSNTLKWAKITPKHSAQNNNSFRDQFGRLQTETVAIDAV 349
>sp|Q6CAP3|IML1_YARLI Vacuolar membrane-associated protein IML1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=IML1 PE=3 SV=1
Length = 1547
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 7 YPEADFWSKSVLPLCA-FEVRSVGFIEDQSADALEVDFANKYIGRGALHRGC 57
Y ++DF++ +P C +E++ +G +E++ + A+ +D+ NK G+ L C
Sbjct: 388 YGDSDFFTNQWVPRCKIYEIQMMGVMENELS-AITIDYLNKPSGKKPLSEYC 438
>sp|Q06GS9|MATK_PIPCE Maturase K OS=Piper cenocladum GN=matK PE=3 SV=1
Length = 512
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 86 IEIVGA---ERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYAL 142
I ++G+ E+FC+ G+ +S D +D + FGR + + C Y +
Sbjct: 374 ISLIGSLSKEKFCNLSGHPTSKAIWADSSDSDIMERFGRVCRNLSHYYSGCSKKQILYRI 433
Query: 143 KYLLR 147
KY+LR
Sbjct: 434 KYILR 438
>sp|P38301|GDT1_YEAST GCR1-dependent translation factor 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GDT1 PE=1 SV=1
Length = 280
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 31 IEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAG--MLFLASMGDNEAIEI 88
+E A + N IG+ +HR + E FM +P + M+FL +GD I I
Sbjct: 156 VEKGGDTAYDKQLKNASIGKKIVHR--IRELASFMFSPVWVQIFLMVFLGELGDRSQISI 213
Query: 89 VGAERFCDY 97
+ DY
Sbjct: 214 IAMATDSDY 222
>sp|Q85XY6|MATK_OCIBA Maturase K OS=Ocimum basilicum GN=matK PE=3 SV=1
Length = 506
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 86 IEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWPGMKQYALKYL 145
I + E+FC+ G+ SS D +D D FGR I + Y +KY+
Sbjct: 370 IAKLAKEKFCNVLGHPSSKPIWADLSDSNIIDRFGRICRNISHYHSGSSKKKSLYRIKYI 429
Query: 146 LR 147
LR
Sbjct: 430 LR 431
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,255,733
Number of Sequences: 539616
Number of extensions: 2339053
Number of successful extensions: 4530
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4519
Number of HSP's gapped (non-prelim): 13
length of query: 162
length of database: 191,569,459
effective HSP length: 108
effective length of query: 54
effective length of database: 133,290,931
effective search space: 7197710274
effective search space used: 7197710274
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)