Query 045192
Match_columns 162
No_of_seqs 105 out of 172
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0d_A Poly(ADP-ribose) glycoh 100.0 1.4E-57 4.8E-62 415.1 10.8 152 8-159 258-410 (531)
2 3uek_A Poly(ADP-ribose) glycoh 100.0 4.9E-56 1.7E-60 408.0 10.9 152 8-159 315-467 (588)
3 4epp_A Poly(ADP-ribose) glycoh 100.0 8.5E-56 2.9E-60 398.7 8.6 150 8-159 222-375 (477)
4 3sig_A PArg, poly(ADP-ribose) 61.2 3.8 0.00013 34.4 2.1 45 21-65 65-117 (277)
5 3q71_A Poly [ADP-ribose] polym 16.8 81 0.0028 25.2 2.7 25 22-48 40-64 (221)
6 3od9_A Putative exported prote 16.3 30 0.001 26.3 -0.0 61 13-73 6-80 (135)
7 1b44_D ETB-POL, protein (B-POL 14.6 55 0.0019 24.1 1.0 32 36-67 93-124 (129)
8 4abl_A Poly [ADP-ribose] polym 13.5 1.3E+02 0.0044 23.1 2.9 25 22-48 23-47 (183)
9 3r9z_A WHY2 protein; stwhy2, s 11.6 3.3E+02 0.011 21.4 4.8 61 22-89 32-92 (178)
10 2kz3_A Putative uncharacterize 10.0 1.4E+02 0.0047 20.4 1.9 18 143-160 51-68 (83)
No 1
>4a0d_A Poly(ADP-ribose) glycohydrolase; 1.75A {Homo sapiens} PDB: 4fc2_A
Probab=100.00 E-value=1.4e-57 Score=415.09 Aligned_cols=152 Identities=35% Similarity=0.600 Sum_probs=146.5
Q ss_pred CChhchhhcCCCccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhhhcccCCCccEEE
Q 045192 8 PEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIE 87 (162)
Q Consensus 8 ~~~~~W~~s~~~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~ 87 (162)
.+.++|.+++.|||+++|.++|+|||.+.+++|||||||+||||||+.|||||||||++||||||+|||||+|+|||||+
T Consensus 258 ~~~~~w~~s~~~L~~l~V~~~g~IEd~~~~~lqVDFANk~IGGGvL~~G~vQEEIrF~i~PELlvs~Lf~e~L~dnEaii 337 (531)
T 4a0d_A 258 EDFPEWERCEKPLTRLHVTYEGTIEENGQGMLQVDFANRFVGGGVTSAGLVQEEIRFLINPELIISRLFTEVLDHNECLI 337 (531)
T ss_dssp SCCCCGGGCCCBCCCEEEESSSCHHHHTTTSEEEEEECSSTTTTTTTTCCSHHHHHHHHSGGGGGHHHHBCCCCTTEEEE
T ss_pred CCcccHHHccCcCCceEEeccCccccCCCCcEEEEecccccCcccccCCcceeeeeeecCHHHHHHHHhCcccCCCceEE
Confidence 45677999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EeCceeeeeeccccceeeEcCCCCCCccccccCccceEEEEEecCCCC-CcccCchhhhHHHHHHHHcccccc
Q 045192 88 IVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWP-GMKQYALKYLLRCVKFALEHLENT 159 (162)
Q Consensus 88 I~Gae~~s~y~GY~~sf~~~g~~~d~~~~d~~~~~~~~ivaiDAl~~~-~~~Qf~~~~i~REL~KAy~gF~~~ 159 (162)
|+|++|||+|+||++||+|+|++.|++++|.++||+++||||||+.|+ +..||++++|+|||||||+||.+.
T Consensus 338 I~GaeryS~y~GY~~sf~~~g~~~d~~~~d~~~rr~t~ivaiDAl~f~~~~~Qf~~~~I~RELnKAy~GF~~~ 410 (531)
T 4a0d_A 338 ITGTEQYSEYTGYAETYRWSRSHEDGSERDDWQRRCTEIVAIDALHFRRYLDQFVPEKMRRELNKAYCGFLRP 410 (531)
T ss_dssp EECCCCCEEEECCGGGCEEEEECCCCCCBCTTSCBSCEEEEEECCCCSSGGGGGSHHHHHHHHHHHHHHHCCT
T ss_pred EeCcEEeEeeccCccceEeccccCCccccccccceeeeEEEEECcccCCchhhhCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999996 578999999999999999999653
No 2
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A {Rattus norvegicus} PDB: 3uel_A*
Probab=100.00 E-value=4.9e-56 Score=408.00 Aligned_cols=152 Identities=35% Similarity=0.576 Sum_probs=147.0
Q ss_pred CChhchhhcCCCccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhhhcccCCCccEEE
Q 045192 8 PEADFWSKSVLPLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIE 87 (162)
Q Consensus 8 ~~~~~W~~s~~~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~ 87 (162)
++.++|++|+.|||+++|.++|+|||++.+++|||||||+||||||+.|||||||||++||||+|+|||||+|+|||||+
T Consensus 315 ~~~~~w~~s~~~L~~l~V~~~G~IEd~~~~~lqVDFANk~IGGGvL~~g~vQEEIrF~i~PELlvs~Lf~e~L~dnEali 394 (588)
T 3uek_A 315 EDFPEWERCDKPLTRLHVTYEGTIEGNGRGMLQVDFANRFVGGGVTGAGLVQEEIRFLINPELIVSRLFTEVLDHNECLI 394 (588)
T ss_dssp SCCCCGGGCCCCCCCEEEESSSCHHHHTTTSEEEEEECSSTTTTTTSSCCSHHHHHHHHSGGGGGHHHHBCCCCTTEEEE
T ss_pred CCccchhhhcCcCcceEEecCCccCcCCCCcEEEEEeccccCccccCCCcchhHhhhhhCHHHHHHHHhCcccCCCcEEE
Confidence 45678999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred EeCceeeeeeccccceeeEcCCCCCCccccccCccceEEEEEecCCCC-CcccCchhhhHHHHHHHHcccccc
Q 045192 88 IVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWP-GMKQYALKYLLRCVKFALEHLENT 159 (162)
Q Consensus 88 I~Gae~~s~y~GY~~sf~~~g~~~d~~~~d~~~~~~~~ivaiDAl~~~-~~~Qf~~~~i~REL~KAy~gF~~~ 159 (162)
|+|++|||+|+||+++|+|+|++.|.+++|.++|+.++||||||+.|+ ...||++++|+|||||||+||...
T Consensus 395 I~Gae~ys~y~GY~~sf~~~g~~~d~~~~d~~~rr~~~ivaiDAl~f~~~~~Qf~~~~i~RELnKAy~GF~~~ 467 (588)
T 3uek_A 395 ITGTEQYSEYTGYAETYRWARSHEDGSEKDDWQRCCTEIVAIDALHFRRYLDQFVPEKVRRELNKAYCGFLRP 467 (588)
T ss_dssp EECCCCCEEEESCGGGCEEEEECCCCCCBCTTCCBSCEEEEEECCCCSSGGGGGSHHHHHHHHHHHHHHHCCT
T ss_pred EECcEeeeeeeccccceEEccccCCccchhhhccceeEEEEEEchhccCchhhcCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999996 478999999999999999999975
No 3
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A*
Probab=100.00 E-value=8.5e-56 Score=398.69 Aligned_cols=150 Identities=33% Similarity=0.536 Sum_probs=145.0
Q ss_pred CChhchhhcCC--CccceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhh-hcccCCCcc
Q 045192 8 PEADFWSKSVL--PLCAFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGML-FLASMGDNE 84 (162)
Q Consensus 8 ~~~~~W~~s~~--~L~~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~L-f~e~L~dnE 84 (162)
.+.++|++|+. |||+++|.++|+||| +++++|||||||+||||||+.|||||||||++||||+|+|| |||+|+|||
T Consensus 222 ~~~~~W~~s~~~~~L~~l~v~~~g~IEd-~~~~lqVDFANK~IGGGvL~~g~vQEEI~F~i~PEL~vs~L~f~e~L~dnE 300 (477)
T 4epp_A 222 EDYENWVDKLKAIKLKNVQLTDDKLIED-FPGTLQVDFANCDIGGGILGNGLVQEEIRFCVCPEMLVSLLVFDQSMEANE 300 (477)
T ss_dssp CCHHHHHHHGGGCBCCCEEEESSCCGGG-CTTSEEEEEECSSTTTTTTTTCCSHHHHHHHHCGGGGGGGGTCCSCCCTTE
T ss_pred ccccchhhccccCCCccEEEecCCcccC-CCCcEEEEEeccccCCccCCCCcchhHhhhhcCHHHHHHHHhcccccCCCe
Confidence 57899999999 999999999999999 78999999999999999999999999999999999999999 999999999
Q ss_pred EEEEeCceeeeeeccccceeeEcCCCCCCccccccCccceEEEEEecCCCC-CcccCchhhhHHHHHHHHcccccc
Q 045192 85 AIEIVGAERFCDYKGYTSSFRFAGDPADKKHFDSFGRRKTRIIAIDALCWP-GMKQYALKYLLRCVKFALEHLENT 159 (162)
Q Consensus 85 ai~I~Gae~~s~y~GY~~sf~~~g~~~d~~~~d~~~~~~~~ivaiDAl~~~-~~~Qf~~~~i~REL~KAy~gF~~~ 159 (162)
||+|+|++|||+|+||++||+|.|++.|++++|. +|++++||||||+.|+ +..||++++|+|||||||+||++.
T Consensus 301 aliI~Ga~rys~y~GY~~sf~~~g~~~d~~~~d~-~~~~~~ivaiDAl~f~~~~~Q~~~~~i~RELnKay~GF~~~ 375 (477)
T 4epp_A 301 VIIMKGIKQYSDYQGYSNSFRFVKMGNSKIQKQK-RNNPQTILAIDALCFNSSDNQFSEVNVSRELNKSYMGFKQE 375 (477)
T ss_dssp EEEEEEECCCCEEESCGGGCEEECCCCSHHHHHH-HHSCEEEEEEECCCCCTTSCTTSHHHHHHHHHHHHHHHTSS
T ss_pred EEEEECcEeEEeeeecccceEEcccCCCcccccc-ccceeEEEEEEccccCCchhccCHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999998 8899999999999996 789999999999999999999874
No 4
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=61.25 E-value=3.8 Score=34.38 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=33.0
Q ss_pred cceEEEecCccccc-------CCCceEEEccc-cccCCcccCCCcccceeeee
Q 045192 21 CAFEVRSVGFIEDQ-------SADALEVDFAN-KYIGRGALHRGCVHEEIRFM 65 (162)
Q Consensus 21 ~~~~v~~~g~IEd~-------~~~~lqVDFAN-k~iGGGvL~~G~vQEEI~F~ 65 (162)
..++|....+++-. +.......||| +.-|||.|.+...|||-+.-
T Consensus 65 t~i~V~~~dtl~aA~~L~~~~~~~v~vLNfAs~~~PGGG~~~Ga~AQEE~Lcr 117 (277)
T 3sig_A 65 TRIEVTEETTLAAARRLTGAAGDQVACLNFASAEHPGGGFLSGAHAQEEGLAR 117 (277)
T ss_dssp CEEEEESCCHHHHHHHHHHHCSSCCEEEEECCSSSTTTTGGGTCCSHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHhcCCCeEEEecccccCCCCCcccCcchHHHHHHH
Confidence 45777766555421 23467899998 56899999988899998654
No 5
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=16.81 E-value=81 Score=25.16 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.5
Q ss_pred ceEEEecCcccccCCCceEEEcccccc
Q 045192 22 AFEVRSVGFIEDQSADALEVDFANKYI 48 (162)
Q Consensus 22 ~~~v~~~g~IEd~~~~~lqVDFANk~i 48 (162)
.+.+. .|.|++...+ ..|.-||..+
T Consensus 40 ~I~i~-~GDIt~~~vD-AIVNaAN~~l 64 (221)
T 3q71_A 40 QMLLV-KEGVQNAKTD-VVVNSVPLDL 64 (221)
T ss_dssp EEEEE-ESCGGGCCSS-EEEEECCTTC
T ss_pred EEEEE-eCcccCCcCC-EEEECCCCCC
Confidence 45555 8999998654 5799999987
No 6
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=16.29 E-value=30 Score=26.29 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=44.4
Q ss_pred hhhcCCCccceEEEecCcccccCCCceEE-Ecccc--------ccCCcccCCCcccceeeeee-----ChhHHHh
Q 045192 13 WSKSVLPLCAFEVRSVGFIEDQSADALEV-DFANK--------YIGRGALHRGCVHEEIRFMI-----NPELIAG 73 (162)
Q Consensus 13 W~~s~~~L~~~~v~~~g~IEd~~~~~lqV-DFANk--------~iGGGvL~~G~vQEEI~F~i-----~PEllvs 73 (162)
..+.++|=+.+.|.++|..|-..-|...| -|++. |+.|.|..+..+=+|+.|.= .|||+|.
T Consensus 6 ~k~i~Lp~g~~~VvseG~lEP~SiGSYsV~lY~~~~p~f~~~dF~~G~v~~RDGtI~~a~laDlngd~~~eLiVt 80 (135)
T 3od9_A 6 FKQLTLPSGQVVTVSEGRGEPASTGSYDVRLYSGANPQFPLDQFIDGKVLPRDGSIKELKLLDLNGDKQPELIVV 80 (135)
T ss_dssp EEEEECTTSCEEEEEECTTCCSSSEEEEEEEECCCSTTSTTSSEEEEEEEEESSEEEEEEEECSSSSSSCEEEEE
T ss_pred hhhccCCCCcEEEEecCCCCccccccEEEEEEecCCCCCChhHhhhcceeccCCeEEEEEEEecCCCCCeeEEEE
Confidence 45567788899999999999886665444 45655 88899997777777777765 5555543
No 7
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=14.63 E-value=55 Score=24.12 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=9.7
Q ss_pred CCceEEEccccccCCcccCCCcccceeeeeeC
Q 045192 36 ADALEVDFANKYIGRGALHRGCVHEEIRFMIN 67 (162)
Q Consensus 36 ~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~ 67 (162)
++.+-..--.+.-|.|..+.|++-||-|++-.
T Consensus 93 pnsiaai~~~~lagfgavgagataeetrmlha 124 (129)
T 1b44_D 93 PNSIAAISMEKLAGFGAVGAGATAEETRMLHA 124 (129)
T ss_dssp SEEEEEEEEECTTC------------------
T ss_pred CchhhhhhhhhhcccccccccccHHHHHHHhh
Confidence 45566666677899999999999999998643
No 8
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=13.50 E-value=1.3e+02 Score=23.13 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.7
Q ss_pred ceEEEecCcccccCCCceEEEcccccc
Q 045192 22 AFEVRSVGFIEDQSADALEVDFANKYI 48 (162)
Q Consensus 22 ~~~v~~~g~IEd~~~~~lqVDFANk~i 48 (162)
.+++. .|.|++...+ ..|.-||..+
T Consensus 23 ~i~i~-~GDIt~~~~D-aIVNaaN~~l 47 (183)
T 4abl_A 23 IFQVA-SGDITKEEAD-VIVNSTSNSF 47 (183)
T ss_dssp EEEEE-ESCGGGCBCS-EEEEEECTTS
T ss_pred EEEEE-eCcccCcccC-EEEECCCCCC
Confidence 34444 8999998654 5799999976
No 9
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=11.63 E-value=3.3e+02 Score=21.39 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=42.9
Q ss_pred ceEEEecCcccccCCCceEEEccccccCCcccCCCcccceeeeeeChhHHHhhhhcccCCCccEEEEe
Q 045192 22 AFEVRSVGFIEDQSADALEVDFANKYIGRGALHRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIV 89 (162)
Q Consensus 22 ~~~v~~~g~IEd~~~~~lqVDFANk~iGGGvL~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~I~ 89 (162)
.+....+|.+.-...|++...||.. +|-.-..++- =+.|.++|.-+..+| .|.+++.+.+-
T Consensus 32 tf~~~~sg~~~v~R~G~ilLefapa-~g~rqYDW~k---K~~FsLS~tEvG~Ll---sl~~~~s~eff 92 (178)
T 3r9z_A 32 TFNRLDSGGVKLNRRGVIMLTFWPS-VGERKYDWEK---RQLFALSATEVGSLI---SMGTRDSSEFF 92 (178)
T ss_dssp CEEECTTSSEEECSCCEEEEEEEEE-EETTEECGGG---CEEEEECHHHHHHHH---TCCTTCCEEEE
T ss_pred cceEcCCCCEEEeeCCEEEEEEeec-cccccccccc---CeEEEeCHHHHHHHH---HhcccCcceeE
Confidence 3444456655445568999999988 5666666444 459999999999888 57777655543
No 10
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=10.05 E-value=1.4e+02 Score=20.36 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHccccccc
Q 045192 143 KYLLRCVKFALEHLENTE 160 (162)
Q Consensus 143 ~~i~REL~KAy~gF~~~~ 160 (162)
-.|.|+|-|+|++|.++.
T Consensus 51 ~~l~r~l~~~~s~~~~~~ 68 (83)
T 2kz3_A 51 VALRRVLLAQFSAFPVNG 68 (83)
T ss_dssp HHHHHHHHHHHCSSCCCC
T ss_pred HHHHHHHHHHhCCCcCcH
Confidence 378999999999987653
Done!