Query 045192
Match_columns 162
No_of_seqs 105 out of 172
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 18:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045192.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045192hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 20.2 15 0.0011 22.2 0.8 14 64-77 42-55 (57)
2 d1oyia_ a.4.5.19 (A:) dsRNA-bi 15.1 30 0.0022 21.0 1.3 12 144-155 30-41 (62)
3 d1aiea_ a.53.1.1 (A:) p53 tetr 13.4 41 0.003 17.9 1.4 10 144-153 14-23 (31)
4 d1gvha2 b.43.4.2 (A:147-253) F 13.1 71 0.0051 19.8 2.9 38 54-91 63-102 (107)
5 d1ibia1 g.39.1.3 (A:117-144) C 12.0 28 0.0021 18.3 0.4 13 41-53 11-23 (28)
6 d1yd9a1 c.50.1.2 (A:6-193) His 11.7 70 0.0051 22.2 2.8 29 21-51 14-44 (188)
7 d3c96a2 d.16.1.2 (A:183-293) M 11.1 1.8E+02 0.013 18.4 4.6 40 119-158 46-89 (111)
8 d1vhua_ c.50.1.2 (A:) Hypothet 10.3 80 0.0058 21.9 2.7 131 23-158 14-165 (192)
9 d3d31a1 b.40.6.3 (A:230-348) S 9.2 1.2E+02 0.009 18.4 3.1 72 28-106 6-80 (119)
10 d1tf4a2 b.2.2.2 (A:461-605) En 9.2 91 0.0067 21.5 2.6 25 38-67 78-105 (145)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.15 E-value=15 Score=22.20 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=11.3
Q ss_pred eeeChhHHHhhhhc
Q 045192 64 FMINPELIAGMLFL 77 (162)
Q Consensus 64 F~i~PEllvs~Lf~ 77 (162)
.+-.||.++|||+-
T Consensus 42 im~npe~fismlle 55 (57)
T d1x3zb1 42 IMANPEVFVSMLLE 55 (57)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHh
Confidence 46789999999973
No 2
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=15.08 E-value=30 Score=20.96 Aligned_cols=12 Identities=33% Similarity=0.047 Sum_probs=8.8
Q ss_pred hhHHHHHHHHcc
Q 045192 144 YLLRCVKFALEH 155 (162)
Q Consensus 144 ~i~REL~KAy~g 155 (162)
+-.||+|||+--
T Consensus 30 mekrevnkalyd 41 (62)
T d1oyia_ 30 MEKREVNKALYD 41 (62)
T ss_dssp SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346999999743
No 3
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.40 E-value=41 Score=17.90 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=8.1
Q ss_pred hhHHHHHHHH
Q 045192 144 YLLRCVKFAL 153 (162)
Q Consensus 144 ~i~REL~KAy 153 (162)
.+.||||.|+
T Consensus 14 emfrelneal 23 (31)
T d1aiea_ 14 EMFRELNEAL 23 (31)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4789999886
No 4
>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}
Probab=13.07 E-value=71 Score=19.81 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=30.2
Q ss_pred CCCcccceeeeeeC--hhHHHhhhhcccCCCccEEEEeCc
Q 045192 54 HRGCVHEEIRFMIN--PELIAGMLFLASMGDNEAIEIVGA 91 (162)
Q Consensus 54 ~~G~vQEEI~F~i~--PEllvs~Lf~e~L~dnEai~I~Ga 91 (162)
.+...+.++.|.|. |.=.+|.-+++.|+..+.|.|+|.
T Consensus 63 ss~~~~~~~~i~vk~~~~G~~S~~l~~~l~~Gd~v~v~gP 102 (107)
T d1gvha2 63 TRKPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAP 102 (107)
T ss_dssp CSCCCSSCEEEEEECCTTCHHHHHHHHTCCTTCEEEEEEE
T ss_pred cCCCCCCceEEEEEEcCCcchhHHHHhcCCCCCEEEEeCc
Confidence 33445777777776 777899999999999999999984
No 5
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=12.02 E-value=28 Score=18.31 Aligned_cols=13 Identities=46% Similarity=0.452 Sum_probs=9.9
Q ss_pred EEccccccCCccc
Q 045192 41 VDFANKYIGRGAL 53 (162)
Q Consensus 41 VDFANk~iGGGvL 53 (162)
|-=|.|.||+|--
T Consensus 11 VyaAEkviGaG~~ 23 (28)
T d1ibia1 11 VYAAEKVIGAGKP 23 (28)
T ss_dssp ESSSSCEESSSSE
T ss_pred HHHHHHHhcCCCc
Confidence 5568899999853
No 6
>d1yd9a1 c.50.1.2 (A:6-193) Histone macro-H2a1.1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.75 E-value=70 Score=22.23 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=21.6
Q ss_pred cceEEEecCcccccCCCceEEEcccccc--CCc
Q 045192 21 CAFEVRSVGFIEDQSADALEVDFANKYI--GRG 51 (162)
Q Consensus 21 ~~~~v~~~g~IEd~~~~~lqVDFANk~i--GGG 51 (162)
..+.|. .|.|.+...+ ..|..||... |||
T Consensus 14 ~~i~i~-~GDIt~~~~D-aIVn~an~~l~~~~g 44 (188)
T d1yd9a1 14 QKLQVV-QADIASIDSD-AVVHPTNTDFYIGGE 44 (188)
T ss_dssp CEEEEE-CSCGGGCCCS-EEEEECCTTCCCCSH
T ss_pred CEEEEE-eCCcCcCCCC-EEEECCCccCCCCch
Confidence 467776 8999998655 5799999854 444
No 7
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.05 E-value=1.8e+02 Score=18.45 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=25.8
Q ss_pred cCccceEEEEE----ecCCCCCcccCchhhhHHHHHHHHccccc
Q 045192 119 FGRRKTRIIAI----DALCWPGMKQYALKYLLRCVKFALEHLEN 158 (162)
Q Consensus 119 ~~~~~~~ivai----DAl~~~~~~Qf~~~~i~REL~KAy~gF~~ 158 (162)
.+.+..++||+ +...-.....++..-=..||.++|.+|..
T Consensus 46 ~G~~liN~Va~v~~~~~~~~~~~e~W~~~g~~~el~~~F~~W~~ 89 (111)
T d3c96a2 46 EGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDL 89 (111)
T ss_dssp TTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHHHHHTTCCB
T ss_pred CcceeEEEEEEEecccccCCCCCCCcccccCHHHHHHHHcCCCC
Confidence 34456678876 22222234567777778899999998864
No 8
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.34 E-value=80 Score=21.94 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=62.9
Q ss_pred eEEEecCcccccCCCceEEEcccccc--CCccc----CCCcccceeeeeeChhHHHhhhhcccCCCccEEEEeCceeeee
Q 045192 23 FEVRSVGFIEDQSADALEVDFANKYI--GRGAL----HRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCD 96 (162)
Q Consensus 23 ~~v~~~g~IEd~~~~~lqVDFANk~i--GGGvL----~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~I~Gae~~s~ 96 (162)
+.|. .|.|.+...+ ..|.-||..+ |||+= ..+...-....-+..+++....--..+...++++-.|-. - .
T Consensus 14 i~i~-~GdIt~~~~D-aIVN~aN~~l~~~gGv~~aI~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~T~~~~-L-~ 89 (192)
T d1vhua_ 14 LKLA-QGDITQYPAK-AIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKAMREQFGRDYIDHGEVVVTPAMN-L-E 89 (192)
T ss_dssp EEEE-ESCGGGSCCS-EEEEEECTTCCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHHHSSSCCCTTCCEEEECGG-G-G
T ss_pred EEEE-eccCCcccCC-EEEECcCcccCCCCcHHHHHHHhhCchhHhHHHHHHHHHHHhhcCCCCCCCcEEEEeccc-C-C
Confidence 4444 7999998654 5799999985 44431 101111112222334444444445567778887655421 0 0
Q ss_pred ecccccee-----eEcCCCCCCcc---cc-------ccCccceEEEEEecCCCCCcccCchhhhHHHHHHHHccccc
Q 045192 97 YKGYTSSF-----RFAGDPADKKH---FD-------SFGRRKTRIIAIDALCWPGMKQYALKYLLRCVKFALEHLEN 158 (162)
Q Consensus 97 y~GY~~sf-----~~~g~~~d~~~---~d-------~~~~~~~~ivaiDAl~~~~~~Qf~~~~i~REL~KAy~gF~~ 158 (162)
..+...-+ +|.+...+... .. .-...+..-||+=|+- .+...|.++...|-+.+|..-|..
T Consensus 90 ~~~~k~ViH~v~P~~~~~~~~~~~~~L~~~~~~~L~~A~~~~~~SIA~P~lg-tG~~g~p~~~~a~~~~~ai~~f~~ 165 (192)
T d1vhua_ 90 ERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAFPAVS-AGIYGCDLEKVVETFLEAVKNFKG 165 (192)
T ss_dssp GGTCCEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCTT-SSTTCCCHHHHHHHHHHHHHHCCC
T ss_pred cccccEEEEEeeecccCCCcchhHHHHHHHHHHHHHHHHHcCCcEEEecCcc-CCCCCCCHHHHHHHHHHHHHHhcc
Confidence 01111122 23322111100 00 0011233456664442 345678888888888887766643
No 9
>d3d31a1 b.40.6.3 (A:230-348) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=9.24 E-value=1.2e+02 Score=18.36 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=39.2
Q ss_pred cCcccccCCCceEEEccccccCCccc---CCCcccceeeeeeChhHHHhhhhcccCCCccEEEEeCceeeeeecccccee
Q 045192 28 VGFIEDQSADALEVDFANKYIGRGAL---HRGCVHEEIRFMINPELIAGMLFLASMGDNEAIEIVGAERFCDYKGYTSSF 104 (162)
Q Consensus 28 ~g~IEd~~~~~lqVDFANk~iGGGvL---~~G~vQEEI~F~i~PEllvs~Lf~e~L~dnEai~I~Gae~~s~y~GY~~sf 104 (162)
.|++...+.+.+.|.. |+..| ..-..-+++.++|.||-+. |-.+.......-.+.|.-.-..|.|-....
T Consensus 6 ~g~v~~~~~~~~~v~~-----~~~~l~~~~~~~~g~~v~~~iRPE~i~--l~~~~~~~~~~N~l~g~V~~~~~~G~~~~v 78 (119)
T d3d31a1 6 KGRVISAEQGLLRIRV-----GEVVIDAAGDMEVGDQVYAFLRPENIA--LSKSSTQSSIRNSLQGRVTEAWVLGALVRV 78 (119)
T ss_dssp EEEEEEEETTEEEEEE-----TTEEEEEESSCCTTCEEEEEECGGGEE--EESSCCCBSCSEEEEEEEEEEEECSSEEEE
T ss_pred EEEEEEecCCEEEEEE-----CCEEEECCCCCCCCCEEEEEEchHHcc--ccccccccccceEEEEEEEEEEECCCeEEE
Confidence 4555554445566654 33433 1223457999999999974 212222222223577777777777744333
Q ss_pred eE
Q 045192 105 RF 106 (162)
Q Consensus 105 ~~ 106 (162)
..
T Consensus 79 ~l 80 (119)
T d3d31a1 79 KV 80 (119)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 10
>d1tf4a2 b.2.2.2 (A:461-605) Endo/exocellulase:cellobiose E-4, C-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Probab=9.17 E-value=91 Score=21.47 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=15.1
Q ss_pred ceEEEccccccCCcccCCCcccc---eeeeeeC
Q 045192 38 ALEVDFANKYIGRGALHRGCVHE---EIRFMIN 67 (162)
Q Consensus 38 ~lqVDFANk~iGGGvL~~G~vQE---EI~F~i~ 67 (162)
-+.|+|. |+.+..|.-.+ ||+|-++
T Consensus 78 Yvei~ft-----g~~i~pgg~s~~~~evqf~i~ 105 (145)
T d1tf4a2 78 YVEIDCT-----GEKIFPGGQSEHRREVQFRIA 105 (145)
T ss_dssp EEEEECT-----TCCBCSSSTTTTEEEEEEEEE
T ss_pred EEEEEec-----CCcCcCCCcCCccEEEEEEEc
Confidence 4899995 33344433333 8888763
Done!