BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045193
         (82 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LH4|A Chain A, Crystal Structure Of Sialostatin L2
          Length = 115

 Score = 34.3 bits (77), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 15 VLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVE---KGKTKVVSSTNYRLI 71
           L GG++ + +  +P   E+  +A  +   +   +  F +V    K +T+ V+ TNYRL 
Sbjct: 4  ALRGGYRERSNQDDPEYLELAHYATSTWSAQQPGKTHFDTVVEVLKVETQTVAGTNYRLT 63

Query: 72 LVVKD 76
          L V +
Sbjct: 64 LKVAE 68


>pdb|3MWZ|A Chain A, Crystal Structure Of The Selenomethionine Derivative Of
          The L 22,47, 100 M Mutant Of Sialostatin L2
          Length = 115

 Score = 33.9 bits (76), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 15 VLVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSV---EKGKTKVVSSTNYRLI 71
           L GG++ + +  +P   E   +A  +   +   +  F +V    K +T+ V+ TNYRL 
Sbjct: 4  ALRGGYRERSNQDDPEYLEXAHYATSTWSAQQPGKTHFDTVVEVXKVETQTVAGTNYRLT 63

Query: 72 LVVKD 76
          L V +
Sbjct: 64 LKVAE 68


>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
          Proteinase Inhibitor Of The Rice, Oryza Sativa L.
          Japonica
          Length = 102

 Score = 33.5 bits (75), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 36/62 (58%)

Query: 16 LVGGWKSKEDLSEPHVTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVK 75
          ++GG +   + ++ H+ ++ RFAV    K++ +  +F+ +   K +VV+ T Y   + VK
Sbjct: 8  VLGGVEPVGNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVK 67

Query: 76 DG 77
          +G
Sbjct: 68 EG 69


>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
 pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
          Length = 91

 Score = 28.9 bits (63), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 31 VTEIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDG 77
          V E+ RFAV    K+     +F  + K K +VVS   + L + V +G
Sbjct: 18 VEELARFAVDEHNKKENALLQFSRLVKAKQQVVSGIMHHLTVEVIEG 64


>pdb|3LI7|A Chain A, Crystal Structure Of Sialostatin L
 pdb|3LI7|B Chain B, Crystal Structure Of Sialostatin L
 pdb|3LI7|C Chain C, Crystal Structure Of Sialostatin L
 pdb|3LI7|D Chain D, Crystal Structure Of Sialostatin L
          Length = 115

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 16 LVGGWKSKED-LSEPHVTEIGRFAVMSTKKRSKNEFKFKSVE---KGKTKVVSSTNYRLI 71
          + GG+  + +  + P    +  +A  +   +   +  F +V    K +T+VV+ TNYRL 
Sbjct: 4  VFGGYSERANHQANPEFLNLAHYATSTWSAQQPGKTHFDTVAEVVKVETQVVAGTNYRLT 63

Query: 72 LVVKD 76
          L V +
Sbjct: 64 LKVAE 68


>pdb|3UL5|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group C2221
 pdb|3UL5|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group C2221
 pdb|3UL5|C Chain C, Saccharum Officinarum Canecystatin-1 In Space Group C2221
 pdb|3UL5|D Chain D, Saccharum Officinarum Canecystatin-1 In Space Group C2221
 pdb|3UL6|A Chain A, Saccharum Officinarum Canecystatin-1 In Space Group P6422
 pdb|3UL6|B Chain B, Saccharum Officinarum Canecystatin-1 In Space Group P6422
          Length = 139

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 33  EIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKD---GKNCYQ 82
           E+ RFAV     ++    +F+ + K + +VV+ T +   + VK+   GK  Y+
Sbjct: 64  ELARFAVAEHNSKTNAMLEFERLVKVRHQVVAGTMHHFTVQVKEAGGGKKLYE 116


>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
          Length = 135

 Score = 25.4 bits (54), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 33  EIGRFAVMSTKKRSKNEFKFKSVEKGKTKVVSSTNYRLILVVKDG 77
           ++ RFAV     ++    +F  V K K +VVS   + L + V D 
Sbjct: 61  DLARFAVREYNNKNNALLEFVRVVKAKEQVVSGMMHYLTVEVNDA 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,148,077
Number of Sequences: 62578
Number of extensions: 64766
Number of successful extensions: 197
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 19
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)