BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045194
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/109 (73%), Positives = 94/109 (86%), Gaps = 1/109 (0%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
++D+LLPIANVG++MKQILP AKISKEAKQT+QECATEFISFVT EAS+KCH+ENRKTV
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSNE 112
NGDDI WALSTLG DNY +A+ R+LHKYRE ERER + +K + S NE
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTE-HNKGSNDSGNE 110
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 89/110 (80%)
Query: 1 MVEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENR 60
MV+EQD+LLPIANVG+IMK ILP AK+SKEAK+TMQEC +EFISFVTGEASDKCHKE R
Sbjct: 48 MVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKR 107
Query: 61 KTVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSS 110
KTVNGDDICWA++ LGFD+Y + +YLH+YR E E+ + K SS
Sbjct: 108 KTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSS 157
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 79/95 (83%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD+ LPIANV +IMK+ LP AKISK+AK+TMQEC +EFISFVTGEASDKC KE RKT+
Sbjct: 27 EQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTI 86
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERER 98
NGDD+ WA++TLGF++Y E + YL ++RE E ER
Sbjct: 87 NGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 62/95 (65%), Positives = 79/95 (83%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD+ LPIANV +IMK+ LP AKISK+AK+T+QEC +EFISF+TGEASDKC +E RKT+
Sbjct: 21 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTI 80
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERER 98
NGDD+ WA++TLGF++Y E + YL KYRE E E+
Sbjct: 81 NGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEK 115
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 89/120 (74%), Gaps = 5/120 (4%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
V EQD+ LPIAN+ +IMK+ +P KI+K+AK+T+QEC +EFISF+T EASDKC +E RK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSNEDKAKESPSH 121
T+NGDD+ WA++TLGF++Y E + YL KYRE E + SK+TA SS+ K++ H
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD-----SKLTAKSSDGSIKKDALGH 143
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 79/96 (82%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD+ LPIANVG+IMK++LP KISK+AK+T+QEC +EFISFVTGEASDKC +E RKT+
Sbjct: 36 EQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTI 95
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERA 99
NGDDI WA++TLGF++Y + YL KYR+ E E+
Sbjct: 96 NGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKV 131
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 139 bits (349), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
V EQD+ LPIAN+ +IMK+ LPP KI K+AK T+QEC +EFISF+T EASDKC KE RK
Sbjct: 19 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRK 78
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSNEDKA 115
TVNGDD+ WA++TLGF++Y E + YL +YRE E + S + SN D
Sbjct: 79 TVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD--NKGSGKSGDGSNRDAG 130
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 92/139 (66%), Gaps = 6/139 (4%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
V EQD+ LPIAN+ +IMK+ LP KI+K+AK+TMQEC +EFISFVT EASDKC +E RK
Sbjct: 27 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRK 86
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSNEDKAKESPSH 121
T+NGDD+ WA++TLGF++Y + + YL +YRE E + K K +S+ D PS
Sbjct: 87 TINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGD-TKGSGKGGESSAKRDG---QPSQ 142
Query: 122 KSREQTTSVQQIDETSSAP 140
S Q + V Q S P
Sbjct: 143 VS--QFSQVPQQGSFSQGP 159
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 84/110 (76%), Gaps = 5/110 (4%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
V EQD+ LPIAN+ +IMK+ +P KI+K+AK+T+QEC +EFISF+T EASDKC +E RK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSN 111
T+NGDD+ WA++TLGF++Y E + YL KYRE E + SK+TA + +
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD-----SKLTAKAGD 140
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 84/110 (76%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
V EQD+ +PIANV +IM++ILP AKIS ++K+T+QEC +E+ISF+TGEA+++C +E RK
Sbjct: 56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRK 115
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSN 111
T+ +D+ WA+S LGFD+Y E + YLH+YRE E ER + S + + +N
Sbjct: 116 TITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTN 165
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/94 (60%), Positives = 75/94 (79%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
V EQD+ LPIAN+ +IMK+ LP KI+K+AK+ +QEC +EFISFVT EASDKC +E RK
Sbjct: 28 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRK 87
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYREDE 95
T+NGDD+ WA++TLGF++Y E + YL +YRE E
Sbjct: 88 TINGDDLLWAMATLGFEDYMEPLKVYLMRYREME 121
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 74/92 (80%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
V EQD+ LPIAN+ +IMK+ +P KI+K+AK+T+QEC +EFISFVT EASDKC KE RK
Sbjct: 32 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRK 91
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYRE 93
T+NG+D+ +A+ TLGF+ Y + + YLHKYRE
Sbjct: 92 TINGEDLLFAMGTLGFEEYVDPLKIYLHKYRE 123
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 132 bits (332), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD LPIANV +IMK +P KI+K+AK+ +QEC +EFISF+T EAS++CH+E RKT+
Sbjct: 55 EQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 114
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDER-ERAKNQSKVTAT 108
NG+DI +A+STLGFD+Y E + +YL KYRE + E+ N + VT T
Sbjct: 115 NGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEKGINATVVTTT 160
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 74/92 (80%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD+ LPIAN+G+IM++ +P KI+K++K+++QEC +EFISF+T EASDKC KE RKT+
Sbjct: 22 EQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTI 81
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDE 95
NGDD+ W++ TLGF++Y E + YL YRE E
Sbjct: 82 NGDDLIWSMGTLGFEDYVEPLKLYLRLYRETE 113
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/116 (52%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD LPIANV +IMK +P KI+K+AK+ +QEC +EFISF+T EAS++CH+E RKT+
Sbjct: 54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSS-NEDKAKES 118
NG+DI +A+STLGFD+Y E + YL K+RE + VTAT +E+ A+E+
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTATDGLSEELAEEA 169
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 77/105 (73%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD LPIANV +IMK +P KI+K+AK+ +QEC +EFISF+T EAS++CH+E RKT+
Sbjct: 54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTAT 108
NG+DI +A+STLGFD+Y E + YL K+RE + VTAT
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTAT 158
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 77/105 (73%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD LPIANV +IMK +P KI+K+AK+ +QEC +EFISF+T EAS++CH+E RKT+
Sbjct: 54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTAT 108
NG+DI +A+STLGFD+Y E + YL K+RE + VTAT
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVTAT 158
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 77/105 (73%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD LPIANV +IMK +P KI+K+AK+ +QEC +EFISF+T EAS++CH+E RKT+
Sbjct: 54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTAT 108
NG+DI +A+STLGFD+Y E + YL K+RE + V+AT
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSAT 158
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 77/105 (73%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD LPIANV +IMK +P KI+K+AK+ +QEC +EFISF+T EAS++CH+E RKT+
Sbjct: 54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 113
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTAT 108
NG+DI +A+STLGFD+Y E + YL K+RE + V+AT
Sbjct: 114 NGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGAVSAT 158
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 79/114 (69%), Gaps = 4/114 (3%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD LPIANV +IMK +P KI+K+AK+ +QEC +EFISF+T EAS++CH+E RKT+
Sbjct: 52 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTI 111
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSNEDKAKE 117
NG+DI +A+STLGFD+Y E + YL K+ RE K + + T + D E
Sbjct: 112 NGEDILFAMSTLGFDSYVEPLKLYLQKF----REAMKGEKGIGGTVTTGDGLSE 161
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 55/93 (59%), Positives = 75/93 (80%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD+ LPIAN+ +IMK+ LP AK++K+AK+T+Q+C +EFISF+T EASDKC +E RKT+
Sbjct: 48 EQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKTI 107
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDER 96
NG+DI A+ +LGF+NY E + YL KYRE E+
Sbjct: 108 NGEDIIAAMVSLGFENYVEPLKVYLLKYRETEK 140
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 77/99 (77%)
Query: 1 MVEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENR 60
+ EQD+ +PIANV +IM++ LP AKIS +AK+T+QEC +E+ISFVTGEA+++C +E R
Sbjct: 56 VAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANERCQREQR 115
Query: 61 KTVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERA 99
KT+ +DI WA+S LGFDNY + + ++++YRE E +R
Sbjct: 116 KTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRG 154
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)
Query: 2 VEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRK 61
+ EQD+ LPI NV ++MK LPP AK+SK+AK+ MQEC +E ISFVT EASD+C + RK
Sbjct: 35 LREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISFVTSEASDRCAADKRK 94
Query: 62 TVNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQ 102
T+NG+DI +L LGF+NY E + YL KYR +++ KNQ
Sbjct: 95 TINGEDILISLHALGFENYAEVLKIYLAKYR--QQQALKNQ 133
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 69/92 (75%)
Query: 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDD 67
LLPIANV +IMK LP AKISKEAK +Q+C +EFISFVTGEAS++C +E RKT+ G+D
Sbjct: 11 LLPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGED 70
Query: 68 ICWALSTLGFDNYTEAIVRYLHKYREDERERA 99
+ AL+TLGF+NY E + L KYRE + A
Sbjct: 71 VLLALNTLGFENYAEVLKISLTKYREQQARSA 102
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 7/128 (5%)
Query: 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV 63
EQD+ LPI NV ++MK LP K+SK+AK+ MQEC +EFISFVT EA D+C RKT+
Sbjct: 22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTI 81
Query: 64 NGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQ-----SKVTATSSNEDKAKES 118
NG+DI +L LGF+NY E + YL KYR +++ KNQ V + + E+ E
Sbjct: 82 NGEDILLSLHALGFENYAEVLKIYLAKYR--QQQAIKNQMMYPKEDVEGSYTEEESRAED 139
Query: 119 PSHKSREQ 126
H ++E+
Sbjct: 140 ADHVTQER 147
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 36 MQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRYLHKYREDE 95
+QEC +EFISF+T EAS++CH+E RKT+NG+DI +A+STLGFD+Y E + YL K+RE
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 96 R-ERAKNQSKVTATSSNEDKAKE 117
+ E+ + T ED A+E
Sbjct: 61 KGEKGIGGTVTTGDGLGEDLAEE 83
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 57/88 (64%)
Query: 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDI 68
LP+AN+ +++K++LP +AKI AK +CA EF+ FV EAS+K E+R+TV +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 69 CWALSTLGFDNYTEAIVRYLHKYREDER 96
+ LGFD Y + + Y+H YRE ER
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFER 121
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 5 QDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVN 64
+D LP A + KI+K++LPP +++++A+ + EC EFI+ V+ E++D C+KE+++T+
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 65 GDDICWALSTLGFDNYTEAIVRYL--HKY 91
+ + AL LGF Y E + HKY
Sbjct: 72 PEHVLKALQVLGFGEYIEEVYAAYEQHKY 100
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%)
Query: 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDI 68
LP A V K++K++LP K S E + + EC EFI ++ EA+D C +E ++T+ + +
Sbjct: 13 LPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHV 72
Query: 69 CWALSTLGFDNYTEAIVRYLHKYR 92
AL+ LGF +YT+ + K++
Sbjct: 73 IKALTELGFSDYTQKVSDVYDKHK 96
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
Query: 4 EQDKL-LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKT 62
E D+L LP A++ KI+K+++P +++ E+++ + C +EFI ++ EA++ C+ N+KT
Sbjct: 14 EDDELTLPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNKKT 72
Query: 63 VNGDDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKV 105
+N + + AL LGF +Y + LH +E +R + +++
Sbjct: 73 INAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRL 115
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%)
Query: 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDI 68
LP A V K++ ILP +KEA+ + EC EFI V+ EA++ C KE +KT+ + I
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 69 CWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSNEDK 114
AL L F Y + +++E ++ R K SK + + D+
Sbjct: 72 IKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSGVSRDE 117
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNG 65
D +P A + K++K+ LP +++ +A++ + C TEFI ++ EA++ C+K +KT++
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 66 DDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKV 105
+ + AL +LGF +Y + L + + +R K S++
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRL 108
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNG 65
D +P A + K++K+ LP +++ +A++ + C TEFI ++ EA++ C+K +KT++
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 66 DDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKV 105
+ + AL +LGF +Y + L + + +R K S++
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRL 108
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNG 65
D +P A + K++K+ LP +++ +A++ + C TEFI ++ EA++ C+K +KT++
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 66 DDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKV 105
+ + AL +LGF +Y + L + + +R K S++
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRL 108
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNG 65
D +P A + K++K+ LP +++ +A++ + C TEFI ++ EA++ C+K +KT++
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 66 DDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKV 105
+ + AL +LGF +Y + L + + +R K S++
Sbjct: 69 EHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRL 108
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2
SV=1
Length = 145
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 5 QDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVN 64
+D LP A + +I+K+ LP ISKEA+ + A+ F+ + T A++ K RKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 65 GDDICWALSTLGFDNYTEAIVRYLHKYREDER 96
D+ A+ + F + + L YR DE+
Sbjct: 66 ASDVLSAMEEMEFQRFITPLKEALEAYRRDEK 97
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2
SV=1
Length = 147
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 5 QDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVN 64
+D LP A + +I+K+ LP ISKEA+ + A+ F+ + T A++ K RKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 65 GDDICWALSTLGFDNYTEAIVRYLHKYREDER 96
D+ A+ + F + + L YR +++
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRREQK 97
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1
SV=1
Length = 147
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 5 QDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVN 64
+D LP A + +I+K+ LP ISKEA+ + A+ F+ + T A++ K RKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 65 GDDICWALSTLGFDNYTEAIVRYLHKYREDER 96
D+ A+ + F + + L YR +++
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRREQK 97
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 5 QDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVN 64
+D LP A + +I+K+ LP ISKEA+ + A+ F+ + T A++ K RKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 65 GDDICWALSTLGFDNYTEAIVRYLHKYREDER 96
D+ A+ + F + + L YR +++
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRREQK 97
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3
PE=2 SV=1
Length = 145
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%)
Query: 5 QDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVN 64
+D LP A + +I+K+ LP ISKEA+ + A+ F+ + T A++ K RKT+N
Sbjct: 6 EDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLN 65
Query: 65 GDDICWALSTLGFDNYTEAIVRYLHKYREDER 96
D+ A+ + F + + L YR +++
Sbjct: 66 ASDVLSAMEEMEFQRFVTPLKEALEAYRREQK 97
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKT 62
E D LP + + +++K +LP ++ + KEA + M AT F+SF+T + + NRK
Sbjct: 11 ELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKI 70
Query: 63 VNGDDICWALSTLGFDNYTEAIVRYLHKY 91
+ D+ AL + + +++ + ++L Y
Sbjct: 71 LMPQDVLNALDEIEYPEFSKTLKKHLEAY 99
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNG 65
D L P + + + K+ LP A ISK+A +Q AT F+S++ + RK +
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 66 DDICWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSKVTATSSNED 113
D+ AL + + ++ + ++++ ++ +R K+ KV ++D
Sbjct: 94 QDVFVALKDVDLAQFVPSVTQSVNEFEQEVAQRKKD--KVVRAQDDQD 139
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 1 MVEEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENR 60
M E QD LP A V +I+K LP +KE++ + + A +I ++T + D R
Sbjct: 1 MSESQD--LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGR 58
Query: 61 KTVNGDDICWALSTLGFDNYTEAIVRYL 88
T++ D+ A+ + F+N+ + YL
Sbjct: 59 STISPKDVFQAIEEIDFENFKPQLEEYL 86
>sp|Q6CJD7|DPB4_KLULA DNA polymerase epsilon subunit D OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB4 PE=3 SV=1
Length = 216
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 25 RAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAI 84
R +SK+A MQ AT F++ + A NRK+ N DI AL TLG +
Sbjct: 58 RITVSKDAALAMQRSATVFVNHLLMFARMNAKDSNRKSCNDQDIMAALDTLGLGALESIL 117
Query: 85 VRYLHKYRE 93
+ +Y+E
Sbjct: 118 TGKMQEYQE 126
>sp|Q750A4|DPB4_ASHGO DNA polymerase epsilon subunit D OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB4
PE=3 SV=1
Length = 204
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 24 PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEA 83
PR +SK+A +Q +T F++ + A +RK+ +G+D+ AL +G + E+
Sbjct: 96 PRVMLSKDASLALQRSSTVFVNHLLMHARQIAQSNDRKSCSGEDVLKALDQIGLAGF-ES 154
Query: 84 IV--RYLHKYREDERERA 99
+V R + +E +R RA
Sbjct: 155 VVRERVVEYEKEVQRRRA 172
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDI 68
LP A V K++ +IL +K+A++ + EFI ++ AS+ E +KT+ + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 69 CWALSTLGFDNYTEAIVRYLHKYREDERERAKNQSK 104
AL L ++ + + L ++ ++ + SK
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFKGSQKVKETRDSK 105
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 8 LLPIANVGKIMKQILPPRAK-------ISKEAKQTMQECATEFISFVTGEASDKCHKENR 60
L P A V K+ K I+ + ++K++ +Q +T F+S + +A E R
Sbjct: 30 LFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 61 KTVNGDDICWALSTLGFDNYTEAIVRYLHKY 91
KT+N DI AL F + + + L +
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKLSVF 120
>sp|Q6FXD0|DPB4_CANGA DNA polymerase epsilon subunit D OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DPB4 PE=3 SV=1
Length = 191
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 28 ISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRY 87
++K+A +Q AT F++ + A + +++R++ N DDI AL +G +
Sbjct: 74 VTKDASMALQHSATVFVNHLLMYARELAKEQDRRSCNVDDILNALEHMGHPGLKPLVANR 133
Query: 88 LHKYRE 93
L Y+E
Sbjct: 134 LDDYQE 139
>sp|P48782|HFO1_METFO Archaeal histone A1 OS=Methanobacterium formicicum GN=hfoA1 PE=1
SV=3
Length = 68
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDI 68
LPIA VG+I+K PR +S +A+ + + E + EA RKTV DI
Sbjct: 4 LPIAPVGRIIKNAGAPR--VSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASDI 61
Query: 69 CWAL 72
A+
Sbjct: 62 EMAV 65
>sp|Q8BXR5|NALCN_MOUSE Sodium leak channel non-selective protein OS=Mus musculus GN=Nalcn
PE=1 SV=2
Length = 1738
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 83 AIVRYLHKYREDERERAKNQSKVTATSSNEDKAKESPSHKSREQTTSVQQI 133
+I+ L + +E ER R N + T +ED S H + +T+S QQ+
Sbjct: 1592 SIIHSLRESQEQERSRFLNPPSIETTQPSEDSNANSQDHSMQPETSSQQQL 1642
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.122 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,545,138
Number of Sequences: 539616
Number of extensions: 1831165
Number of successful extensions: 8283
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 8122
Number of HSP's gapped (non-prelim): 251
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)