Query 045194
Match_columns 157
No_of_seqs 143 out of 546
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 100.0 4.9E-33 1.7E-37 223.1 11.2 111 3-114 10-120 (179)
2 2byk_B Chrac-14; nucleosome sl 100.0 8.6E-31 2.9E-35 199.9 10.5 99 1-99 1-100 (128)
3 1n1j_A NF-YB; histone-like PAI 100.0 2.5E-29 8.4E-34 181.1 11.1 91 3-93 3-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 1.4E-22 4.7E-27 141.4 7.4 69 6-75 2-70 (76)
5 1f1e_A Histone fold protein; a 99.8 3.8E-21 1.3E-25 150.9 7.4 75 7-82 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 2.1E-19 7.1E-24 122.1 8.2 66 8-75 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 2.5E-19 8.4E-24 133.6 8.4 89 5-95 4-94 (111)
8 1f1e_A Histone fold protein; a 99.7 2.7E-17 9.2E-22 129.0 8.7 70 3-74 77-146 (154)
9 2byk_A Chrac-16; nucleosome sl 99.7 1.5E-17 5.2E-22 128.5 3.3 94 4-98 15-112 (140)
10 4g92_C HAPE; transcription fac 99.6 2E-16 6.8E-21 118.9 7.2 76 6-82 39-114 (119)
11 2hue_C Histone H4; mini beta s 99.6 2.8E-16 9.7E-21 111.4 7.2 76 3-80 5-80 (84)
12 1n1j_B NF-YC; histone-like PAI 99.6 3.6E-16 1.2E-20 113.4 7.7 78 4-82 15-92 (97)
13 1id3_B Histone H4; nucleosome 99.6 5.6E-16 1.9E-20 113.9 7.8 76 3-80 23-98 (102)
14 1ku5_A HPHA, archaeal histon; 99.6 1.9E-15 6.5E-20 103.3 7.9 64 8-73 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.6 5.4E-15 1.8E-19 108.4 7.9 76 3-80 24-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 7.7E-15 2.6E-19 107.6 7.3 76 3-80 24-99 (103)
17 1jfi_A Transcription regulator 99.3 1.6E-12 5.6E-17 94.4 6.0 78 6-84 9-86 (98)
18 2hue_B Histone H3; mini beta s 99.2 3.5E-11 1.2E-15 84.7 7.7 71 6-76 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.1 3.1E-10 1.1E-14 83.3 7.0 71 3-73 22-98 (100)
20 3nqj_A Histone H3-like centrom 99.0 5.6E-10 1.9E-14 79.4 7.6 70 7-76 2-76 (82)
21 1tzy_C Histone H3; histone-fol 99.0 7.7E-10 2.6E-14 85.2 7.2 74 3-76 57-133 (136)
22 3nqu_A Histone H3-like centrom 99.0 7.2E-10 2.5E-14 85.8 6.5 75 3-77 56-135 (140)
23 3r45_A Histone H3-like centrom 99.0 9.2E-10 3.1E-14 86.5 7.1 74 3-76 72-150 (156)
24 1taf_B TFIID TBP associated fa 98.9 8.5E-09 2.9E-13 71.3 8.2 65 7-73 5-69 (70)
25 4dra_A Centromere protein S; D 98.8 1.3E-08 4.5E-13 76.2 7.9 75 13-93 32-107 (113)
26 3vh5_A CENP-S; histone fold, c 98.8 6.2E-09 2.1E-13 80.5 6.3 63 13-75 24-87 (140)
27 3v9r_A MHF1, uncharacterized p 98.8 2.2E-08 7.6E-13 72.2 7.6 63 13-75 17-80 (90)
28 3b0b_B CENP-S, centromere prot 98.7 6.8E-08 2.3E-12 71.6 8.6 63 13-75 24-87 (107)
29 1taf_A TFIID TBP associated fa 98.6 1.9E-07 6.3E-12 64.1 7.9 61 12-74 5-65 (68)
30 2nqb_C Histone H2A; nucleosome 98.5 4.4E-07 1.5E-11 68.5 8.2 68 6-74 21-88 (123)
31 1tzy_A Histone H2A-IV; histone 98.5 5.6E-07 1.9E-11 68.4 8.1 68 6-74 23-90 (129)
32 1f66_C Histone H2A.Z; nucleoso 98.5 5.6E-07 1.9E-11 68.4 8.0 69 6-74 25-93 (128)
33 1id3_C Histone H2A.1; nucleoso 98.4 5.4E-07 1.8E-11 68.7 7.6 68 6-74 23-90 (131)
34 2ly8_A Budding yeast chaperone 98.4 3.4E-07 1.2E-11 69.2 6.3 53 28-80 65-117 (121)
35 2f8n_G Core histone macro-H2A. 98.4 8E-07 2.7E-11 66.8 8.1 68 6-74 20-87 (120)
36 2f8n_K Histone H2A type 1; nuc 98.4 1.2E-06 3.9E-11 68.3 7.9 68 6-74 42-109 (149)
37 2nqb_D Histone H2B; nucleosome 98.3 1.9E-06 6.3E-11 65.4 7.4 64 12-76 37-100 (123)
38 1tzy_B Histone H2B; histone-fo 98.3 2.4E-06 8.1E-11 65.0 7.4 63 13-76 41-103 (126)
39 2jss_A Chimera of histone H2B. 98.2 2.8E-06 9.6E-11 67.9 7.5 69 6-74 103-171 (192)
40 2l5a_A Histone H3-like centrom 98.2 2.9E-06 9.9E-11 70.4 6.9 72 5-76 8-85 (235)
41 2l5a_A Histone H3-like centrom 98.2 1.1E-06 3.8E-11 72.8 4.1 59 16-76 169-227 (235)
42 4dra_E Centromere protein X; D 97.9 5E-05 1.7E-09 54.0 8.5 70 5-74 9-79 (84)
43 2jss_A Chimera of histone H2B. 97.9 2.8E-05 9.6E-10 62.1 7.9 62 12-74 7-68 (192)
44 3b0b_C CENP-X, centromere prot 97.9 7.9E-05 2.7E-09 52.6 8.3 72 3-74 3-75 (81)
45 1h3o_B Transcription initiatio 97.8 0.00014 4.7E-09 50.8 8.3 66 8-74 5-70 (76)
46 1bh9_B TAFII28; histone fold, 97.4 0.00064 2.2E-08 48.6 7.6 67 8-76 16-83 (89)
47 2ly8_A Budding yeast chaperone 97.0 0.0013 4.4E-08 49.5 6.3 84 8-93 1-93 (121)
48 3v9r_B MHF2, uncharacterized p 96.4 0.0068 2.3E-07 43.4 5.7 48 8-55 1-49 (88)
49 3uk6_A RUVB-like 2; hexameric 91.6 0.63 2.2E-05 37.7 7.6 80 9-88 259-344 (368)
50 3ksy_A SOS-1, SON of sevenless 87.7 1.6 5.6E-05 42.0 8.3 67 6-74 102-168 (1049)
51 2c9o_A RUVB-like 1; hexameric 84.4 2.2 7.4E-05 36.6 6.7 78 10-87 367-450 (456)
52 2v1u_A Cell division control p 80.7 3.8 0.00013 32.6 6.4 68 11-78 203-279 (387)
53 1fnn_A CDC6P, cell division co 79.7 6.5 0.00022 31.5 7.5 75 10-84 194-283 (389)
54 3kw6_A 26S protease regulatory 77.1 2.4 8.2E-05 27.7 3.5 31 44-74 42-72 (78)
55 1k6k_A ATP-dependent CLP prote 74.6 9 0.00031 27.1 6.3 24 50-73 12-35 (143)
56 2qby_A CDC6 homolog 1, cell di 74.4 12 0.00041 29.6 7.6 76 9-84 197-281 (386)
57 3k1j_A LON protease, ATP-depen 70.8 25 0.00085 31.2 9.5 49 26-74 313-374 (604)
58 2dzn_B 26S protease regulatory 69.3 5.6 0.00019 26.3 3.9 30 47-76 40-69 (82)
59 1khy_A CLPB protein; alpha hel 67.6 15 0.00053 25.9 6.2 38 27-76 5-42 (148)
60 3vlf_B 26S protease regulatory 66.1 5.9 0.0002 26.7 3.5 35 44-78 40-74 (88)
61 1wwi_A Hypothetical protein TT 64.9 13 0.00046 28.5 5.6 58 9-68 3-60 (148)
62 2y1q_A CLPC N-domain, negative 64.4 12 0.00042 26.5 5.2 38 27-76 5-42 (150)
63 2r44_A Uncharacterized protein 64.1 36 0.0012 27.0 8.4 50 25-74 224-296 (331)
64 1g8p_A Magnesium-chelatase 38 63.6 19 0.00066 28.4 6.7 50 25-74 265-321 (350)
65 2krk_A 26S protease regulatory 63.3 8.3 0.00028 26.0 3.8 32 44-75 50-81 (86)
66 3aji_B S6C, proteasome (prosom 63.2 6.1 0.00021 25.9 3.1 33 44-76 40-72 (83)
67 3fes_A ATP-dependent CLP endop 59.0 22 0.00074 25.5 5.7 47 27-85 7-53 (145)
68 3fh2_A Probable ATP-dependent 58.5 21 0.00071 25.6 5.5 37 27-75 6-42 (146)
69 2qby_B CDC6 homolog 3, cell di 56.8 20 0.00067 28.7 5.6 70 9-80 197-275 (384)
70 2f3n_A SH3 and multiple ankyri 53.8 9.9 0.00034 25.0 2.8 23 63-85 5-27 (76)
71 1r4v_A Hypothetical protein AQ 51.5 17 0.00058 28.6 4.2 59 8-68 26-84 (171)
72 1in4_A RUVB, holliday junction 50.7 41 0.0014 27.2 6.7 66 13-78 184-253 (334)
73 3bq7_A Diacylglycerol kinase d 50.3 12 0.00041 24.8 2.8 25 62-86 9-33 (81)
74 2chg_A Replication factor C sm 45.7 31 0.0011 24.4 4.7 63 9-73 161-224 (226)
75 3fwb_A Cell division control p 44.8 68 0.0023 21.5 7.8 37 51-87 101-137 (161)
76 2kru_A Light-independent proto 44.0 19 0.00066 23.8 3.0 51 25-76 3-54 (63)
77 3h4m_A Proteasome-activating n 43.6 22 0.00074 27.4 3.8 33 43-75 226-258 (285)
78 2gle_A Neurabin-1; SAM domain, 43.2 13 0.00045 23.9 2.1 22 63-84 7-28 (74)
79 3bos_A Putative DNA replicatio 42.4 77 0.0026 22.9 6.5 60 12-73 177-241 (242)
80 1kw4_A Polyhomeotic; SAM domai 41.2 19 0.00067 24.6 2.8 25 62-86 16-41 (89)
81 3fes_A ATP-dependent CLP endop 40.0 55 0.0019 23.3 5.3 40 25-76 79-118 (145)
82 3zri_A CLPB protein, CLPV; cha 39.8 47 0.0016 25.0 5.0 48 27-86 24-71 (171)
83 1njg_A DNA polymerase III subu 39.3 42 0.0014 23.9 4.5 63 9-72 185-248 (250)
84 2d8c_A Phosphatidylcholine:cer 37.3 11 0.00037 26.5 1.0 23 62-84 19-41 (97)
85 3fh2_A Probable ATP-dependent 37.3 70 0.0024 22.7 5.5 39 26-76 80-118 (146)
86 2l09_A ASR4154 protein; proto- 36.8 22 0.00074 23.5 2.3 49 26-75 3-52 (62)
87 1lv7_A FTSH; alpha/beta domain 36.1 37 0.0013 25.8 4.0 33 44-76 221-253 (257)
88 4b4t_M 26S protease regulatory 35.1 32 0.0011 30.0 3.8 33 43-75 390-422 (434)
89 4b4t_L 26S protease subunit RP 34.6 36 0.0012 29.7 4.1 31 44-74 391-421 (437)
90 4b4t_I 26S protease regulatory 34.5 36 0.0012 30.0 4.1 32 43-74 391-422 (437)
91 3pxg_A Negative regulator of g 34.2 79 0.0027 27.0 6.2 49 27-87 5-53 (468)
92 4b4t_J 26S protease regulatory 33.2 40 0.0014 29.3 4.1 32 43-74 357-388 (405)
93 4b4t_H 26S protease regulatory 32.1 39 0.0013 30.1 3.9 31 44-74 419-449 (467)
94 1bh9_A TAFII18; histone fold, 31.9 87 0.003 19.0 4.8 39 14-53 6-44 (45)
95 1w5s_A Origin recognition comp 31.1 1.4E+02 0.0048 23.7 6.9 68 9-76 215-294 (412)
96 3pvs_A Replication-associated 30.8 1.1E+02 0.0039 26.1 6.6 67 9-76 165-245 (447)
97 1uxc_A FRUR (1-57), fructose r 29.9 66 0.0022 20.5 3.8 36 7-43 10-45 (65)
98 4ds7_A Calmodulin, CAM; protei 29.6 1.2E+02 0.0041 19.8 8.7 40 51-90 89-128 (147)
99 3pfi_A Holliday junction ATP-d 28.4 1.3E+02 0.0044 23.6 6.1 68 11-78 186-257 (338)
100 3f8t_A Predicted ATPase involv 27.6 1.7E+02 0.0059 26.3 7.4 66 8-73 393-481 (506)
101 3omb_A Extracellular solute-bi 27.5 1.1E+02 0.0036 25.9 5.8 70 21-92 461-534 (535)
102 1k6k_A ATP-dependent CLP prote 27.4 61 0.0021 22.5 3.7 38 26-75 78-115 (143)
103 3vfd_A Spastin; ATPase, microt 27.0 2.5E+02 0.0087 22.8 8.1 68 11-78 284-368 (389)
104 3pm8_A PFCDPK2, calcium-depend 26.9 1.4E+02 0.0047 21.6 5.7 68 8-78 21-89 (197)
105 2e8o_A SAM domain and HD domai 26.8 26 0.00091 24.3 1.6 22 63-84 30-53 (103)
106 2y1q_A CLPC N-domain, negative 26.8 70 0.0024 22.4 3.9 37 26-74 78-114 (150)
107 3fs7_A Parvalbumin, thymic; ca 26.7 1.3E+02 0.0044 19.2 5.0 70 8-88 6-87 (109)
108 3nbx_X ATPase RAVA; AAA+ ATPas 26.6 3.2E+02 0.011 23.8 10.0 45 25-69 223-280 (500)
109 3b9p_A CG5977-PA, isoform A; A 26.5 1.7E+02 0.0057 22.4 6.4 60 27-86 208-283 (297)
110 3sjs_A URE3-BP sequence specif 26.1 2E+02 0.0068 21.3 7.1 29 50-78 121-149 (220)
111 5pal_A Parvalbumin; calcium-bi 26.1 67 0.0023 20.6 3.4 70 9-89 6-87 (109)
112 2qz4_A Paraplegin; AAA+, SPG7, 26.0 26 0.00088 26.4 1.5 32 44-75 218-249 (262)
113 3ezq_B Protein FADD; apoptosis 25.7 1.1E+02 0.0036 22.1 4.7 35 56-91 58-92 (122)
114 1khy_A CLPB protein; alpha hel 25.5 70 0.0024 22.3 3.7 25 49-73 92-116 (148)
115 4b4t_K 26S protease regulatory 25.1 66 0.0023 27.9 4.1 31 44-74 383-413 (428)
116 3pxi_A Negative regulator of g 25.0 1.3E+02 0.0044 27.2 6.2 48 27-86 5-52 (758)
117 1ixz_A ATP-dependent metallopr 24.8 59 0.002 24.6 3.4 28 45-72 226-253 (254)
118 2ovk_B RLC, myosin regulatory 24.8 1.1E+02 0.0037 20.5 4.5 26 53-78 92-117 (153)
119 1jr3_A DNA polymerase III subu 24.2 87 0.003 24.7 4.4 66 9-75 178-244 (373)
120 1v85_A Similar to ring finger 24.0 40 0.0014 22.8 2.0 23 62-84 19-43 (91)
121 1tiz_A Calmodulin-related prot 23.9 1.1E+02 0.0037 17.4 4.0 25 54-78 9-33 (67)
122 1hqc_A RUVB; extended AAA-ATPa 23.6 81 0.0028 24.4 4.0 70 9-78 168-241 (324)
123 3bs7_A Protein aveugle; sterIl 23.3 42 0.0014 21.7 2.0 23 63-85 6-30 (78)
124 1sxj_D Activator 1 41 kDa subu 22.7 70 0.0024 25.0 3.5 67 9-76 192-264 (353)
125 3ox6_A Calcium-binding protein 22.1 1.7E+02 0.0059 19.1 8.3 28 51-78 93-121 (153)
126 1iy2_A ATP-dependent metallopr 21.8 71 0.0024 24.7 3.3 28 46-73 251-278 (278)
127 1pva_A Parvalbumin; calcium bi 21.7 1.6E+02 0.0054 18.7 4.7 56 9-75 7-71 (110)
128 4a4j_A Pacszia, cation-transpo 21.7 43 0.0015 19.8 1.6 18 61-78 48-65 (69)
129 3qrx_A Centrin; calcium-bindin 21.2 2E+02 0.0067 19.4 9.1 38 51-88 106-143 (169)
130 3li6_A Calcium-binding protein 21.2 90 0.0031 17.8 3.1 16 61-76 15-30 (66)
131 3zri_A CLPB protein, CLPV; cha 21.0 95 0.0033 23.3 3.8 39 26-76 97-136 (171)
132 1pk1_B Sex COMB on midleg CG94 20.9 49 0.0017 22.6 2.0 24 62-85 16-41 (89)
133 1ygt_A Cytoplasmic dynein ligh 20.5 1.2E+02 0.004 21.1 4.0 23 1-23 1-24 (111)
134 1ich_A TNF-1, tumor necrosis f 20.1 67 0.0023 23.3 2.7 36 54-89 64-99 (112)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=100.00 E-value=4.9e-33 Score=223.08 Aligned_cols=111 Identities=27% Similarity=0.575 Sum_probs=105.7
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHH
Q 045194 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTE 82 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~ 82 (157)
.++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|++
T Consensus 10 ~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~ 88 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYIS 88 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHH
T ss_pred chhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHH
Confidence 568999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccCCCcchh
Q 045194 83 AIVRYLHKYREDERERAKNQSKVTATSSNEDK 114 (157)
Q Consensus 83 ~L~~~L~~yre~~~~k~~nq~K~~~~~~t~~~ 114 (157)
+|+.+|+.||+..+.|++...|...+|+|.++
T Consensus 89 ~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Ee 120 (179)
T 1jfi_B 89 EVKEVLQECKTVALKRRKASSRLENLGIPEEE 120 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHH
T ss_pred HHHHHHHHHHHHHHhCccccchhhccCCCHHH
Confidence 99999999999999998888999999998754
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=8.6e-31 Score=199.87 Aligned_cols=99 Identities=35% Similarity=0.585 Sum_probs=87.9
Q ss_pred Ccc-cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCch
Q 045194 1 MVE-EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDN 79 (157)
Q Consensus 1 m~~-e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 79 (157)
|++ ++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+||+++|++.|.+++||||+++||++||+.+||.+
T Consensus 1 m~e~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~ 80 (128)
T 2byk_B 1 MVERIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFES 80 (128)
T ss_dssp ----------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTT
T ss_pred CCCccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHH
Confidence 664 7899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 045194 80 YTEAIVRYLHKYREDERERA 99 (157)
Q Consensus 80 y~~~L~~~L~~yre~~~~k~ 99 (157)
|+++|+.+|+.||+..+.|+
T Consensus 81 fl~~lk~~l~~yr~~~~~kk 100 (128)
T 2byk_B 81 FVPSLTQDLEVYRKVVKEKK 100 (128)
T ss_dssp THHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988875
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=2.5e-29 Score=181.14 Aligned_cols=91 Identities=59% Similarity=1.021 Sum_probs=85.8
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHH
Q 045194 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTE 82 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~ 82 (157)
+++|+.||+|+|.||||+.+|++.+||+||+.+|++|+++||.||+.+|++.|.++|||||+++||.+||+.|||.+|++
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~ 82 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVE 82 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHH
T ss_pred CcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 045194 83 AIVRYLHKYRE 93 (157)
Q Consensus 83 ~L~~~L~~yre 93 (157)
+++.+|++||+
T Consensus 83 ~~~~~l~~~r~ 93 (93)
T 1n1j_A 83 PLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.87 E-value=1.4e-22 Score=141.43 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=64.5
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
...||+|+|.||||+++| +++||+||+++|++|+++||+||+++|++.|.+++||||+++||++|++.+
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 468999999999999998 799999999999999999999999999999999999999999999998643
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.83 E-value=3.8e-21 Score=150.91 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=71.4
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHH
Q 045194 7 KLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTE 82 (157)
Q Consensus 7 ~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~ 82 (157)
..||+|+|.||||+.||. .+||+||+++|++|+++|+.||+++|+++|.++|||||+++||++||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 369999999999999985 999999999999999999999999999999999999999999999999999998744
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.79 E-value=2.1e-19 Score=122.09 Aligned_cols=66 Identities=27% Similarity=0.417 Sum_probs=63.9
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
.||+++|.||||+. ++.+||+||..+|++|+++||.+|+.+|+..|.++|||||+++||..|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 59999999999999 6899999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=2.5e-19 Score=133.58 Aligned_cols=89 Identities=11% Similarity=0.251 Sum_probs=79.7
Q ss_pred ccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHHHH
Q 045194 5 QDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAI 84 (157)
Q Consensus 5 ~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L 84 (157)
+|..||+++|.||||.. +..+||+|+.++|.+|+.+|+..|+.+|..+|.++|||||+++||+.||+.+|+..|..++
T Consensus 4 ~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l 81 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPL 81 (111)
T ss_dssp ------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCH
T ss_pred CCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccH
Confidence 68899999999999999 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH--HHHH
Q 045194 85 VRYLHKY--REDE 95 (157)
Q Consensus 85 ~~~L~~y--re~~ 95 (157)
..++++| +|..
T Consensus 82 ~~l~~~~lp~E~~ 94 (111)
T 3b0c_T 82 HVLVERHLPLEYR 94 (111)
T ss_dssp HHHHHHHSCHHHH
T ss_pred HHHHHHhCcHHHH
Confidence 9999999 5543
No 8
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.71 E-value=2.7e-17 Score=129.02 Aligned_cols=70 Identities=21% Similarity=0.283 Sum_probs=66.9
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
+.+|+.||+++|.||||+. +..+||+||++.|++|+++|+.+|+++|+++|.++|||||+++||++||+.
T Consensus 77 d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4578899999999999999 688999999999999999999999999999999999999999999999975
No 9
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.67 E-value=1.5e-17 Score=128.49 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccCchhHHHHHhhCCCchhHH
Q 045194 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKC-HKENRKTVNGDDICWALSTLGFDNYTE 82 (157)
Q Consensus 4 e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~-~~~kRKTI~~eDVl~AL~~LgF~~y~~ 82 (157)
..++.||+|.|.||||.. |+..+||++|..+|++|++.||.||+..|+..| ...+||||+++||.+|+...+..+|+.
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 356789999999999997 777899999999999999999999999999999 999999999999999998665555544
Q ss_pred ---HHHHHHHHHHHHHHHH
Q 045194 83 ---AIVRYLHKYREDERER 98 (157)
Q Consensus 83 ---~L~~~L~~yre~~~~k 98 (157)
+...++..|++..+.+
T Consensus 94 divP~ki~l~~~~~~~~~~ 112 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLN 112 (140)
T ss_dssp TTSCSCC------------
T ss_pred ccccchhhHHHHHHHHHhc
Confidence 7889999999887665
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.65 E-value=2e-16 Score=118.85 Aligned_cols=76 Identities=29% Similarity=0.300 Sum_probs=69.7
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHH
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTE 82 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~ 82 (157)
+..||+|.|.||||.. |+..+||+||..+|.+|++.||.+|+..|+..|..++||||+++||..|++..+..+|+.
T Consensus 39 ~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 4579999999999976 778899999999999999999999999999999999999999999999999877666643
No 11
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.64 E-value=2.8e-16 Score=111.42 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=70.8
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchh
Q 045194 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNY 80 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 80 (157)
++....||+++|.||++.. +..+||+|+.+.+++++++|+..|+.+|..+|.++|||||+++||.+||+.+|+.-|
T Consensus 5 r~~~~~ip~~~I~Riar~~--Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRG--GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred cccCCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4567789999999999998 456899999999999999999999999999999999999999999999999998755
No 12
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.64 E-value=3.6e-16 Score=113.44 Aligned_cols=78 Identities=27% Similarity=0.266 Sum_probs=69.2
Q ss_pred cccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHH
Q 045194 4 EQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTE 82 (157)
Q Consensus 4 e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~ 82 (157)
..+..||+|.|.||||.. |+..+||+||..+|.+|++.||.+|+..|+..|.+++||||+++||..|++..++.+|+.
T Consensus 15 ~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -----CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 346789999999999998 555789999999999999999999999999999999999999999999999999888864
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.63 E-value=5.6e-16 Score=113.88 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=70.0
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchh
Q 045194 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNY 80 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 80 (157)
++....||+++|.||++.. +..+||.|+.+.|++|+++|+..|+.+|..+|.+++||||+++||.+||+.+||.-|
T Consensus 23 r~~i~~ip~~~I~Rlar~~--Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 23 RDNIQGITKPAIRRLARRG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp -CCGGGSCHHHHHHHHHHT--TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HhccCCCCHHHHHHHHHHc--CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4556779999999999997 456899999999999999999999999999999999999999999999999998765
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.61 E-value=1.9e-15 Score=103.31 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=61.7
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHh
Q 045194 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
.||+++|.||+|+. +..+||+++..+|+++++.|+..|+.+|+..|.++|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 69999999999997 67899999999999999999999999999999999999999999999986
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.57 E-value=5.4e-15 Score=108.35 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=70.0
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchh
Q 045194 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNY 80 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 80 (157)
++.+..||+++|.||++..- -.+||.|+.+.|.+++++|+..|+.+|..+|.+++||||+++||.+||+.+||..|
T Consensus 24 r~~~~gip~~~I~Rlar~~G--~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 24 RDNIQGITKPAIRRLARRGG--VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCGGGGSCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred hhhcccCCHHHHHHHHHHcC--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 44566799999999999983 36899999999999999999999999999999999999999999999999998755
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.55 E-value=7.7e-15 Score=107.62 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=63.7
Q ss_pred ccccccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchh
Q 045194 3 EEQDKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNY 80 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 80 (157)
++....||+++|.||++..- -.+||.|+.+.|.++++.|+..|+.+|..+|++++||||+++||.+||+.+||..|
T Consensus 24 r~~~~gip~~~I~Rlar~~G--~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRGG--VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp ------CCHHHHHHHHHHTT--CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhccCCHHHHHHHHHHcC--ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 34556799999999999983 36899999999999999999999999999999999999999999999999998755
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.33 E-value=1.6e-12 Score=94.41 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=59.4
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHHHH
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAI 84 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L 84 (157)
...||.+.|.||||.. |+..+||.+|..+|.++++.|+.+|+..|...+.+.+||||+++||..|++.-+..+|+..+
T Consensus 9 ~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred CCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 5789999999999974 44468999999999999999999999999999999999999999999999987777665543
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.22 E-value=3.5e-11 Score=84.69 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=65.5
Q ss_pred cccCchhHHHHHHhhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 6 DKLLPIANVGKIMKQILP---PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP---~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
++.||++.+.||+|++.. ++.+++.+|..+||++++.|+.-|...|+..|.|.||+||.+.||-.|.+--|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 578999999999999954 57899999999999999999999999999999999999999999999987655
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.06 E-value=3.1e-10 Score=83.31 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=60.4
Q ss_pred ccccccCchhHHHHHHhhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHh
Q 045194 3 EEQDKLLPIANVGKIMKQILPP------RAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP~------~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
+..++.||++.+.||++++..+ +.+++.+|..+||++++.|+.-|...|+..|.+.||+||.+.||-.|.+
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 4568899999999999999742 7899999999999999999999999999999999999999999988863
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.04 E-value=5.6e-10 Score=79.37 Aligned_cols=70 Identities=19% Similarity=0.155 Sum_probs=64.3
Q ss_pred ccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 7 KLLPIANVGKIMKQILP-----PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 7 ~~LP~A~I~RImK~~LP-----~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
+.+|++.+.||+|++.. .+.+++.+|..+||++++.|+.-|...||..|.|.||+||.++||-.|.+--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 57999999999999873 36899999999999999999999999999999999999999999999886544
No 21
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.00 E-value=7.7e-10 Score=85.20 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=67.9
Q ss_pred ccccccCchhHHHHHHhhhCC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 3 EEQDKLLPIANVGKIMKQILP---PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP---~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
+..++.||++.+.||++++.. ++.+++.+|..+||++++.|+.-|..+|+..|.+.||+||.+.||-.|..--|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 356899999999999999953 57999999999999999999999999999999999999999999999986544
No 22
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.98 E-value=7.2e-10 Score=85.77 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=66.4
Q ss_pred ccccccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCC
Q 045194 3 EEQDKLLPIANVGKIMKQILP-----PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGF 77 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP-----~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF 77 (157)
+..++.||++.+.||++++.. .+.+++.+|..+||++++.|+.-|..+||..|.|.||+||.++||-.|+.--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 457899999999999999863 268999999999999999999999999999999999999999999999876554
No 23
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.98 E-value=9.2e-10 Score=86.46 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=65.5
Q ss_pred ccccccCchhHHHHHHhhhCC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 3 EEQDKLLPIANVGKIMKQILP-----PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP-----~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
+..++.||++.+.||++++.. .+.+++.+|..+||++++.|+.-|..+|+..|.+.||+||.++||-.|+.--|
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg 150 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcc
Confidence 457899999999999999873 26799999999999999999999999999999999999999999999876443
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.88 E-value=8.5e-09 Score=71.26 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=61.2
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHh
Q 045194 7 KLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 7 ~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
-.||.++|.+|.++. +-.++|.|+...|.+-++..+..|+.+|...++|.||||++++||-.||+
T Consensus 5 s~lp~~~v~~iaes~--Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESI--GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 469999999999998 45589999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.81 E-value=1.3e-08 Score=76.20 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=64.7
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHHHHHHHH
Q 045194 13 NVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRYLHKY 91 (157)
Q Consensus 13 ~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~~L~~y 91 (157)
+|.||+++... .++.||.+++.+|.+.+..|+.-|+.++...|++.|||||+++||..+++.. +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 58899998853 3577999999999999999999999999999999999999999999999875 4555566555
Q ss_pred HH
Q 045194 92 RE 93 (157)
Q Consensus 92 re 93 (157)
.+
T Consensus 106 ~~ 107 (113)
T 4dra_A 106 SE 107 (113)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 26
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.81 E-value=6.2e-09 Score=80.50 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=58.0
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 13 NVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 13 ~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
+|.||+++... .++.||.+++.+|.+.+..|+..|+.++...|.|.|||||+++||..+++..
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn 87 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 57888888743 3688999999999999999999999999999999999999999999999875
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.2e-08 Score=72.17 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=58.8
Q ss_pred HHHHHHhhhCCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 13 NVGKIMKQILPPR-AKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 13 ~I~RImK~~LP~~-~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
+|.+|+.+.++.. +.||.++..+|.+.+..|+.-|+.++...|+|+|||||+++||..+++..
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 5789999998755 88999999999999999999999999999999999999999999998864
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.70 E-value=6.8e-08 Score=71.60 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=57.7
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 13 NVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 13 ~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
+|.||+++..- .+.++|.+++.+|.+.+..|+.-|+.+|...|.|.|||||+.+||..|++..
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 48899998742 2478999999999999999999999999999999999999999999999885
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.60 E-value=1.9e-07 Score=64.13 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=56.5
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 12 ANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 12 A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
..|.||+|+. +-.+++.++...|.+.+..++.-|..+|..+|.+.|||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~--G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL--NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT--TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3688999997 455899999999999999999999999999999999999999999999874
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.49 E-value=4.4e-07 Score=68.47 Aligned_cols=68 Identities=7% Similarity=0.133 Sum_probs=62.6
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 21 gL~fPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp TCSSCHHHHHHHHHHTTS-CSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 578999999999999743 34999999999999999999999999999999999999999999999874
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.46 E-value=5.6e-07 Score=68.44 Aligned_cols=68 Identities=7% Similarity=0.132 Sum_probs=62.7
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|++.
T Consensus 23 gLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNY-AERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp TCSSCHHHHHHHHHHTTS-SSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ceeccHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 578999999999999733 44999999999999999999999999999999999999999999999874
No 32
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.46 E-value=5.6e-07 Score=68.35 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=62.8
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.||.+.|.|+||+.-....+|+.+|...|..+.+-|...|...|...|.+.+|++|+++||..|++.
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 478999999999999842235999999999999999999999999999999999999999999999874
No 33
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.44 E-value=5.4e-07 Score=68.69 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=62.7
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+-|+..|...|...|.+.+|++|+++||..|++.
T Consensus 23 gLqfPV~rI~R~Lk~~~~-a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNY-AQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp TCSSCHHHHHHHHHTTCS-CSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CeecCHHHHHHHHHcccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 578999999999999743 34999999999999999999999999999999999999999999999874
No 34
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=3.4e-07 Score=69.21 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchh
Q 045194 28 ISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNY 80 (157)
Q Consensus 28 ISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 80 (157)
||.++.+.+.+..++|+.-|..+|..++.+.+||||+++||..||+..|-.-|
T Consensus 65 IS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ly 117 (121)
T 2ly8_A 65 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 117 (121)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCC
Confidence 44444444444444455555566888999999999999999999999886533
No 35
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.43 E-value=8e-07 Score=66.78 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=62.6
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|...|...|...|.+.+|++|+++||..|++.
T Consensus 20 gLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp TCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 478999999999999832 45999999999999999999999999999999999999999999999874
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.36 E-value=1.2e-06 Score=68.34 Aligned_cols=68 Identities=7% Similarity=0.134 Sum_probs=62.6
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.||.+.|.|+||+.-. ..+|+.+|...|..+.+.|+..|...|...|.+.+|++|+++||..|++.
T Consensus 42 gLqFPVgrI~R~LK~~~~-a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNY-SERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp TCSSCHHHHHHHHHHTTS-CSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccc-ccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 478999999999999743 44999999999999999999999999999999999999999999999874
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.30 E-value=1.9e-06 Score=65.37 Aligned_cols=64 Identities=25% Similarity=0.323 Sum_probs=59.1
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 12 ANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 12 A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
.-|+|++|++-| +..||.+|...|...+..+..-|+.+|...+...+|+||+.+||..|++-|=
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhC
Confidence 458999999976 7889999999999999999999999999999999999999999999986543
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.27 E-value=2.4e-06 Score=65.02 Aligned_cols=63 Identities=30% Similarity=0.376 Sum_probs=58.8
Q ss_pred HHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 13 NVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 13 ~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
-|+|++|++-| +..||.+|...|...+..+..-|+.+|...+...+|+||+..||..|++-|=
T Consensus 41 YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 41 YVYKVLKQVHP-DTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 59999999976 7889999999999999999999999999999999999999999999996553
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.23 E-value=2.8e-06 Score=67.94 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=62.9
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.||.+.|.|+||+.-....+|+.+|...|..+.+.|+..|...|...|.+.||++|+++||..|++.
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 578999999999999732235899999999999999999999999999999999999999999999873
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=2.9e-06 Score=70.37 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=64.2
Q ss_pred ccccCchhHHHHHHhhhCCC------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 5 QDKLLPIANVGKIMKQILPP------RAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 5 ~D~~LP~A~I~RImK~~LP~------~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
..+.+|+....|++++...+ +.+++.+|..+||++++.|+.-|...+|-.|.+.+|.||.+.|+..|..--|
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 35789999999999998753 6799999999999999999999999999999999999999999999987655
No 41
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.1e-06 Score=72.84 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=53.5
Q ss_pred HHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 16 KIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 16 RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
||++.. +--+||.++.+.+.....+|+.-|..+|..+|.+.+||||+++||..||+.+|
T Consensus 169 RlaRrg--GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKG--GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCT--TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 555555 44589999999999999999999999999999999999999999999999765
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.94 E-value=5e-05 Score=54.01 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=62.0
Q ss_pred ccccCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 5 QDKLLPIANVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 5 ~D~~LP~A~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
-+..+|..+|.||++.... ++.||++||..++.+....||..-...|.+.+..++-.+|..+|+-+.+-.
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 3678999999999998885 678999999999999999999999999999999899999999999876643
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.93 E-value=2.8e-05 Score=62.11 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=58.1
Q ss_pred hHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 12 ANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 12 A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.-|+|++|++-| +..||.+|...|...+..+..-|+.+|...+...+|+||+.+||..|++-
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 358999999987 78899999999999999999999999999999999999999999999963
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.86 E-value=7.9e-05 Score=52.56 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=61.8
Q ss_pred ccccccCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 3 EEQDKLLPIANVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 3 ~e~D~~LP~A~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
++.+-.+|...|.||++.... ++.||++||..++.+....||..-...|...+..+|-..|..+|+-+.+-.
T Consensus 3 ~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 3 EEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp ----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 345678999999999999886 578999999999999999999999999999999899999999999776543
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.78 E-value=0.00014 Score=50.82 Aligned_cols=66 Identities=15% Similarity=0.327 Sum_probs=61.6
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
-|++..+..+++++-| +..+..|+.++|.+.|.+||.-++..|...|++-|-.||...||...|++
T Consensus 5 vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4789999999999865 78999999999999999999999999999999999999999999988864
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.41 E-value=0.00064 Score=48.56 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=60.3
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccCchhHHHHHhhCC
Q 045194 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKEN-RKTVNGDDICWALSTLG 76 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~k-RKTI~~eDVl~AL~~Lg 76 (157)
.||++.|.|||...+ +..++.+...+|.-.+.+||..|..+|.+++.+.+ +.-|.+.||-.|.+.|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 699999999999997 56899999999999999999999999999998765 45899999999987664
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0013 Score=49.53 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=59.5
Q ss_pred cCchhHHHHHHhhhCC---C---CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCccCchhHHHHHhhCCCc
Q 045194 8 LLPIANVGKIMKQILP---P---RAKISKEAKQTMQECATEFISFVTGEASDKCHKEN---RKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP---~---~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~k---RKTI~~eDVl~AL~~LgF~ 78 (157)
++|+....|+++++.. . +.+++.+|..+||++++.|+.-|...+|-.|.|.- =|.|++ |+...+.. =+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~-~iy~e~r~-vl~ 78 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISG-LIYEEVRA-VLK 78 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSS-CHHHHHHH-HHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhH-HHHHHHHH-HHH
Confidence 4788889999988642 2 68999999999999999999999999999887663 367777 45555432 123
Q ss_pred hhHHHHHHHHHHHHH
Q 045194 79 NYTEAIVRYLHKYRE 93 (157)
Q Consensus 79 ~y~~~L~~~L~~yre 93 (157)
+|.+.+-...-.|-+
T Consensus 79 ~~l~~i~rdav~yae 93 (121)
T 2ly8_A 79 SFLESVIRDSVTYTE 93 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.0068 Score=43.39 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=40.3
Q ss_pred cCchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045194 8 LLPIANVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKC 55 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~ 55 (157)
.||..+|.||++.... ++.||++||..++++....||..-...|.+..
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~k 49 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSH 49 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999997765 57899999999999999999987666665544
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.58 E-value=0.63 Score=37.68 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=53.8
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh-CCCchhHH
Q 045194 9 LPIANVGKIMKQILP-PRAKISKEAKQTMQECAT----EFISFVTGEASDKCHKENRKTVNGDDICWALST-LGFDNYTE 82 (157)
Q Consensus 9 LP~A~I~RImK~~LP-~~~kISkDA~~al~~~at----eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~-LgF~~y~~ 82 (157)
++...+..|++..+. .+..++.++...|.+.+. -.+..+...|...|...++.+|+.+||..|++. ++...-..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~~~~~~~~ 338 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQ 338 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSBCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcCHHHHHH
Confidence 345556666665443 256799999999888776 245555667777888889999999999999986 44433333
Q ss_pred HHHHHH
Q 045194 83 AIVRYL 88 (157)
Q Consensus 83 ~L~~~L 88 (157)
.++++.
T Consensus 339 ~~~~~~ 344 (368)
T 3uk6_A 339 YMKEYQ 344 (368)
T ss_dssp HHC---
T ss_pred HHHHhh
Confidence 344333
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=87.72 E-value=1.6 Score=41.99 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=52.6
Q ss_pred cccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 6 DKLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 6 D~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.+|...|.|++|... .-||+..|...|.-..+-....|..-|...|...+++.|++.||..|+..
T Consensus 102 ~l~~pv~~~~~~l~~~~--~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVL--GYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SCSSCHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CccccHHHHHHHhhccc--ccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 46799999999997765 34899999888776555444555555777788889999999999998863
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.45 E-value=2.2 Score=36.61 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=51.7
Q ss_pred chhHHHHHHhhhCC-CCccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC-CCchhHHH
Q 045194 10 PIANVGKIMKQILP-PRAKISKEAKQTMQECA-T---EFISFVTGEASDKCHKENRKTVNGDDICWALSTL-GFDNYTEA 83 (157)
Q Consensus 10 P~A~I~RImK~~LP-~~~kISkDA~~al~~~a-t---eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L-gF~~y~~~ 83 (157)
+...+..+++..+. .+..++.++...|.+.+ . -....+...|...|..+++..|+.+||..|+.-+ +...-+..
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~ 446 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKI 446 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHH
Confidence 44455555554432 24568999988888776 1 2455566778888988999999999999998653 44333344
Q ss_pred HHHH
Q 045194 84 IVRY 87 (157)
Q Consensus 84 L~~~ 87 (157)
|+++
T Consensus 447 ~~~~ 450 (456)
T 2c9o_A 447 LADQ 450 (456)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 4433
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.73 E-value=3.8 Score=32.64 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=50.3
Q ss_pred hhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 11 IANVGKIMKQILP---PRAKISKEAKQTMQECAT------EFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 11 ~A~I~RImK~~LP---~~~kISkDA~~al~~~at------eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
...+..|++..+. ....++.++...+.+.+. -.+..+...|...|..+++.+|+.+||..|+..+..+
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 4556666655432 245789999988888776 4555666777888888899999999999999877433
No 53
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=79.74 E-value=6.5 Score=31.45 Aligned_cols=75 Identities=11% Similarity=0.113 Sum_probs=52.8
Q ss_pred chhHHHHHHhhhCCC---CccccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 10 PIANVGKIMKQILPP---RAKISKEAKQTMQECA------------TEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 10 P~A~I~RImK~~LP~---~~kISkDA~~al~~~a------------teFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
....+..+++..+.. ...++.++...+.+.+ --++..+...|...|..+++.+|+.+||..++..
T Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 194 TKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp BHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 345566666555431 2368999998888877 2345556677788888889999999999999988
Q ss_pred CCCchhHHHH
Q 045194 75 LGFDNYTEAI 84 (157)
Q Consensus 75 LgF~~y~~~L 84 (157)
.....+...+
T Consensus 274 ~~~~~~~~~l 283 (389)
T 1fnn_A 274 VLFGISEEVL 283 (389)
T ss_dssp HSCCCCHHHH
T ss_pred HhhhhHHHHH
Confidence 7655444443
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=77.10 E-value=2.4 Score=27.68 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
|..|..+|...|...++..|+.+|+..||+.
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 6677788888899999999999999999975
No 55
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=74.63 E-value=9 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCccCchhHHHHHh
Q 045194 50 EASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 50 eA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
.|.+.|...+...|.++|++.||=
T Consensus 12 ~A~~~A~~~~~~~i~~eHlLlaLl 35 (143)
T 1k6k_A 12 MAFARAREHRHEFMTVEHLLLALL 35 (143)
T ss_dssp HHHHHHHHHTBSEECHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHH
Confidence 566778889999999999999983
No 56
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.44 E-value=12 Score=29.58 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=52.3
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCch
Q 045194 9 LPIANVGKIMKQILP---PRAKISKEAKQTMQECAT------EFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDN 79 (157)
Q Consensus 9 LP~A~I~RImK~~LP---~~~kISkDA~~al~~~at------eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 79 (157)
|....+..+++..+. ....++.++...+.+.+. -.+..+...|...+..+++..|+.+||..|+..+..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 334556666665332 135689999888887765 23444666788888888999999999999998875544
Q ss_pred hHHHH
Q 045194 80 YTEAI 84 (157)
Q Consensus 80 y~~~L 84 (157)
+...+
T Consensus 277 ~~~~~ 281 (386)
T 2qby_A 277 VRDII 281 (386)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 57
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.76 E-value=25 Score=31.19 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=39.7
Q ss_pred ccccHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 26 AKISKEAKQTMQECAT-------------EFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 26 ~kISkDA~~al~~~at-------------eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
..++.+|...|.+.+. --+.-|...|...|..+++..|+.+||..|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4699999999888653 234455667888999999999999999999964
No 58
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=69.32 E-value=5.6 Score=26.27 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 47 VTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 47 ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
|..+|...|...++..|+.+|+..|++..-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 344677778888899999999999998764
No 59
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=67.58 E-value=15 Score=25.86 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 27 KISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 27 kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
+++..+..+|+ .|...|...+...|.++|++.||=.-+
T Consensus 5 ~~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALA------------DAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHH------------HHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 56777777774 466679999999999999999986544
No 60
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=66.06 E-value=5.9 Score=26.67 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
|.-|..+|.-.|.+.++..|+.+|+..|++..-.+
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 55666778888888899999999999999876543
No 61
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=64.91 E-value=13 Score=28.54 Aligned_cols=58 Identities=10% Similarity=0.186 Sum_probs=51.0
Q ss_pred CchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhH
Q 045194 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDI 68 (157)
Q Consensus 9 LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDV 68 (157)
+|.+-+.|+++.+. +.-|.|+-..-+.+.++.=+.-|.--|.+.|+.+||-+|...|+
T Consensus 3 m~~~~~e~lFR~aa--~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 3 MKVAEFERLFRQAA--GLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp SCHHHHHHHHHHHH--CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred CCHHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 67888999999995 55677888888889999989999999999999999999999886
No 62
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=64.45 E-value=12 Score=26.54 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 27 KISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 27 kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
+++..+..+|+ .|.+.|...+...|.++|++.||=.-+
T Consensus 5 ~~t~~~~~al~------------~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 57777777775 456679999999999999999985544
No 63
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.10 E-value=36 Score=26.98 Aligned_cols=50 Identities=18% Similarity=0.057 Sum_probs=35.4
Q ss_pred CccccHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 25 RAKISKEAKQTMQECATEF-----------------------ISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 25 ~~kISkDA~~al~~~ateF-----------------------I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
++.++.++.+.+.+.+... ...+...|...|.-.+|..|+.+||..++..
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5678888888877655322 2234445666677889999999999988864
No 64
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.65 E-value=19 Score=28.39 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=39.1
Q ss_pred CccccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 25 RAKISKEAKQTMQECATE-------FISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 25 ~~kISkDA~~al~~~ate-------FI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
.+.++.++...|.+.+.- -+..+...|...|...+|.+|+.+||..|+..
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 458999999998877543 34455566777788889999999999988864
No 65
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=63.30 E-value=8.3 Score=26.03 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
|..|..+|...|...++..|+.+|+..|++..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456678788888889999999999998753
No 66
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=63.19 E-value=6.1 Score=25.90 Aligned_cols=33 Identities=27% Similarity=0.176 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
|..|..+|...|...++..|+.+|+..|++..-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445566788888888999999999999998754
No 67
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=58.97 E-value=22 Score=25.50 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHH
Q 045194 27 KISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIV 85 (157)
Q Consensus 27 kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~ 85 (157)
+++..++.+|. .|.+.|...+...|.++|++.||=.-+=+.....|+
T Consensus 7 ~~T~~a~~~l~------------~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 7 RFTQRAKKAID------------LAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred ccCHHHHHHHH------------HHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 57888888775 456679999999999999999986554333333333
No 68
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=58.54 E-value=21 Score=25.56 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 27 KISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 27 kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
+++..+..+|+ .|.+.|...+...|.++|++.||=.-
T Consensus 6 ~~t~~~~~~l~------------~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIV------------LAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHH------------HHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 56777777775 46667999999999999999998654
No 69
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=56.85 E-value=20 Score=28.67 Aligned_cols=70 Identities=6% Similarity=-0.001 Sum_probs=45.4
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCch
Q 045194 9 LPIANVGKIMKQILP---PRAKISKEAKQTMQECAT------EFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDN 79 (157)
Q Consensus 9 LP~A~I~RImK~~LP---~~~kISkDA~~al~~~at------eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 79 (157)
|....+..|++..+. ....++.++...+.+.+. -.+..+...|...|. +..+|+.+||..|++.+..+.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~~~~ 274 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYEQER 274 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHhcch
Confidence 344566666666432 245788999888887765 123334445555555 678999999999998874333
Q ss_pred h
Q 045194 80 Y 80 (157)
Q Consensus 80 y 80 (157)
|
T Consensus 275 ~ 275 (384)
T 2qby_B 275 L 275 (384)
T ss_dssp H
T ss_pred H
Confidence 3
No 70
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=53.85 E-value=9.9 Score=24.98 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=19.4
Q ss_pred cCchhHHHHHhhCCCchhHHHHH
Q 045194 63 VNGDDICWALSTLGFDNYTEAIV 85 (157)
Q Consensus 63 I~~eDVl~AL~~LgF~~y~~~L~ 85 (157)
=+++||..-|+.+||+.|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36789999999999999987654
No 71
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=51.52 E-value=17 Score=28.59 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=52.3
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhH
Q 045194 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDI 68 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDV 68 (157)
-+|.+-+.|+++.+. +.-|.|+-..-+.+.++.=+.-|.--|.+.|+.+||-+|...|+
T Consensus 26 vmg~~kferlFR~aa--gLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 26 PKGFDKLDHYFRTEL--DIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp CTTHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred cCChHHHHHHHHHHh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 578899999999996 56688888888999999888888889999999999999999886
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=50.71 E-value=41 Score=27.17 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHHHHhhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 13 NVGKIMKQILP-PRAKISKEAKQTMQECAT---EFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 13 ~I~RImK~~LP-~~~kISkDA~~al~~~at---eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
.+..|++.... -++.++.++...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++++
T Consensus 184 ~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 184 ELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 44455543321 145688888777765432 2334444566677777788899999999999988765
No 73
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=50.27 E-value=12 Score=24.85 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.6
Q ss_pred ccCchhHHHHHhhCCCchhHHHHHH
Q 045194 62 TVNGDDICWALSTLGFDNYTEAIVR 86 (157)
Q Consensus 62 TI~~eDVl~AL~~LgF~~y~~~L~~ 86 (157)
.-+++||..-|+.+||+.|++....
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~~ 33 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFTR 33 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 4578999999999999999876543
No 74
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=45.75 E-value=31 Score=24.43 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=37.8
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHh
Q 045194 9 LPIANVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 9 LP~A~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
++...+..+++..+. .+..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 344555566655442 13458888888777665444444444434444333 6899999988875
No 75
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=44.84 E-value=68 Score=21.54 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHHHH
Q 045194 51 ASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRY 87 (157)
Q Consensus 51 A~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~~ 87 (157)
+....-.++.-.|+.+++..+|..+|..--.+.+...
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 137 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAM 137 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3444445677789999999999998865333333333
No 76
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=44.02 E-value=19 Score=23.80 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=35.9
Q ss_pred CccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 25 RAKISKEAKQTMQECATEFI-SFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 25 ~~kISkDA~~al~~~ateFI-~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
++..+.||...|.+.= -|+ ..+-...-..|...|...|+.+.+..|-+.+|
T Consensus 3 ~l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKVP-FFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 4568888888877633 233 23334556778999999999999888866544
No 77
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=43.59 E-value=22 Score=27.41 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 43 FISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 43 FI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
-|..|...|...|...++.+|+.+||..|++.+
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455677788888888999999999999998644
No 78
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=43.17 E-value=13 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.6
Q ss_pred cCchhHHHHHhhCCCchhHHHH
Q 045194 63 VNGDDICWALSTLGFDNYTEAI 84 (157)
Q Consensus 63 I~~eDVl~AL~~LgF~~y~~~L 84 (157)
=+.+||..-|+.+||+.|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999999887654
No 79
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=42.37 E-value=77 Score=22.90 Aligned_cols=60 Identities=2% Similarity=-0.013 Sum_probs=34.7
Q ss_pred hHHHHHHhhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCccCchhHHHHHh
Q 045194 12 ANVGKIMKQILP-PRAKISKEAKQTMQECAT----EFISFVTGEASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 12 A~I~RImK~~LP-~~~kISkDA~~al~~~at----eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
..+.++++..+. .+..++.++...|.+.+. +.+..|. .+...+..++ ++|+.+||..+|+
T Consensus 177 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 177 DEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 344444444332 245688888887776553 3333332 3444454444 4699999988875
No 80
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=41.17 E-value=19 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=20.6
Q ss_pred ccCchhHHHHHhhC-CCchhHHHHHH
Q 045194 62 TVNGDDICWALSTL-GFDNYTEAIVR 86 (157)
Q Consensus 62 TI~~eDVl~AL~~L-gF~~y~~~L~~ 86 (157)
.-+.+||..-|+.+ ||++|++..++
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~~ 41 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFIQ 41 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHHH
Confidence 45789999999999 99999876543
No 81
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=39.96 E-value=55 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=31.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 25 RAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 25 ~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
...+|..+..+|.+ |...|..-|...|+.+|++.||-.-+
T Consensus 79 ~~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 79 DIVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CCEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 34578887777754 55668888999999999999996554
No 82
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=39.77 E-value=47 Score=25.04 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=33.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHHH
Q 045194 27 KISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVR 86 (157)
Q Consensus 27 kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~ 86 (157)
+++..++.+|+ .|.+.|...+...|.++|++.||=.-+=+.....|+.
T Consensus 24 kfT~~a~~aL~------------~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~ 71 (171)
T 3zri_A 24 KLNAQSKLALE------------QAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQ 71 (171)
T ss_dssp HBCHHHHHHHH------------HHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHH
T ss_pred HcCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHH
Confidence 45666666664 4666799999999999999999865543333333333
No 83
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=39.32 E-value=42 Score=23.91 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=39.0
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHH
Q 045194 9 LPIANVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWAL 72 (157)
Q Consensus 9 LP~A~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL 72 (157)
|....+..+++..+. .+..++.++...|.+.+.=-..++-......+ ..++.+|+.+||-.++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~-~~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAI-ASGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHH-TTTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hccCceecHHHHHHHh
Confidence 344555666655442 24568888888887776544444444443333 3455689999998776
No 84
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=37.34 E-value=11 Score=26.50 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.7
Q ss_pred ccCchhHHHHHhhCCCchhHHHH
Q 045194 62 TVNGDDICWALSTLGFDNYTEAI 84 (157)
Q Consensus 62 TI~~eDVl~AL~~LgF~~y~~~L 84 (157)
.-+.+||..-|+.+||.+|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 35789999999999999998664
No 85
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=37.29 E-value=70 Score=22.68 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 26 AKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 26 ~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
..+|..+..+|.+ |...|..-|...|+.+|++.||-.-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 4578888877765 55568888999999999999986544
No 86
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=36.77 E-value=22 Score=23.48 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=32.8
Q ss_pred ccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 26 AKISKEAKQTMQECATEFI-SFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 26 ~kISkDA~~al~~~ateFI-~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
+..+.||...|.+.= -|+ ..+-...-..|...|...|+.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKNIP-FFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 456777777776632 222 2233455677899999999999888775543
No 87
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=36.14 E-value=37 Score=25.79 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
|..+...|...|...++.+|+.+|+..|++..-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 444556777778888999999999999998653
No 88
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.11 E-value=32 Score=30.04 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 43 FISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 43 FI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
-|..|..+|.-.|.++++..|+.+|+..||+..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356677788888888999999999999999754
No 89
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.56 E-value=36 Score=29.67 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
|..|..+|.-.|..++|..|+.+|+..|++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5566678888888999999999999999864
No 90
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.46 E-value=36 Score=30.00 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 43 FISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 43 FI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
=|..|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 36667778888899999999999999999864
No 91
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=34.19 E-value=79 Score=27.01 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=35.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHHHH
Q 045194 27 KISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRY 87 (157)
Q Consensus 27 kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~~ 87 (157)
+++..+..+|. .|.+.|...+...|.++|++.||=.-+=+.....|..+
T Consensus 5 ~ft~~a~~al~------------~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~ 53 (468)
T 3pxg_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQAL 53 (468)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHH
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHc
Confidence 57778887775 45667999999999999999999766544444444443
No 92
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.24 E-value=40 Score=29.31 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 43 FISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 43 FI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
=|..|..+|.-.|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35667778888898999999999999999864
No 93
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.06 E-value=39 Score=30.08 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
|.-|..+|.-.|.+++|+.|+.+|+..|+++
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 5667778888898999999999999999875
No 94
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=31.94 E-value=87 Score=18.99 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=29.7
Q ss_pred HHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 045194 14 VGKIMKQILPPRAKISKEAKQTMQECATEFISFVTGEASD 53 (157)
Q Consensus 14 I~RImK~~LP~~~kISkDA~~al~~~ateFI~~ltseA~e 53 (157)
|..+|-. .++...-..|...+|.+...+||..+..+|.+
T Consensus 6 i~~mMy~-fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYG-FGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHH-TTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443 33445678899999999999999999998875
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=31.07 E-value=1.4e+02 Score=23.73 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=47.2
Q ss_pred CchhHHHHHHhhhCC---CCccccHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCC
Q 045194 9 LPIANVGKIMKQILP---PRAKISKEAKQTMQECAT---------EFISFVTGEASDKCHKENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 9 LP~A~I~RImK~~LP---~~~kISkDA~~al~~~at---------eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~Lg 76 (157)
|....+..+++..+. ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++..+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 344556666644321 123578888888877776 26667777788888888899999999988887654
No 96
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=30.78 E-value=1.1e+02 Score=26.12 Aligned_cols=67 Identities=7% Similarity=0.199 Sum_probs=43.0
Q ss_pred CchhHHHHHHhhhCC--------CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc--CCCccCchhHHHHHhh
Q 045194 9 LPIANVGKIMKQILP--------PRAKISKEAKQTMQECAT----EFISFVTGEASDKCHKE--NRKTVNGDDICWALST 74 (157)
Q Consensus 9 LP~A~I~RImK~~LP--------~~~kISkDA~~al~~~at----eFI~~ltseA~e~~~~~--kRKTI~~eDVl~AL~~ 74 (157)
++...+..+++..+. ....|+.++.+.|.+.+. ..++.|- .|...|... ++.+|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le-~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE-MMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH-HHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHhcccccCCCCccCHHHHHHHHhh
Confidence 455666666666553 246799999998887643 2333322 333334322 6679999999999987
Q ss_pred CC
Q 045194 75 LG 76 (157)
Q Consensus 75 Lg 76 (157)
..
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 97
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.86 E-value=66 Score=20.46 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=26.0
Q ss_pred ccCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHH
Q 045194 7 KLLPIANVGKIMKQILPPRAKISKEAKQTMQECATEF 43 (157)
Q Consensus 7 ~~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateF 43 (157)
..+..++|.|++...- ....|+.+.+.-|.+++.++
T Consensus 10 aGVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 10 AGVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HTSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 3578899999998641 11368999988888877654
No 98
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=29.58 E-value=1.2e+02 Score=19.82 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHHHHHHH
Q 045194 51 ASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRYLHK 90 (157)
Q Consensus 51 A~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~~L~~ 90 (157)
+....-.++.-.|+.+++..+|..+|..-=.+.+...+..
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 128 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLRE 128 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444456677889999999999999865333444444443
No 99
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=28.41 E-value=1.3e+02 Score=23.61 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=44.6
Q ss_pred hhHHHHHHhhhCC-CCccccHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 11 IANVGKIMKQILP-PRAKISKEAKQTMQECATE---FISFVTGEASDKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 11 ~A~I~RImK~~LP-~~~kISkDA~~al~~~ate---FI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
...+..+++..+. .+..++.++...|.+.+.- .+..+...+...|...+...|+.+|+-.++..++++
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 4444555554432 2456888988888774322 233334455667777888899999999999887765
No 100
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=27.64 E-value=1.7e+02 Score=26.33 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=41.3
Q ss_pred cCchhHHHHHHhhhC--CCCccccHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCCccC
Q 045194 8 LLPIANVGKIMKQIL--PPRAKISKEAKQTMQECATEF---------------------ISFVTGEASDKCHKENRKTVN 64 (157)
Q Consensus 8 ~LP~A~I~RImK~~L--P~~~kISkDA~~al~~~ateF---------------------I~~ltseA~e~~~~~kRKTI~ 64 (157)
.++...+.+.+.-+= --...++.++.+.|.+....- +..|...|.-.|.-.+|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 355666666554431 014578888888777654332 112444566678888888888
Q ss_pred chhHHHHHh
Q 045194 65 GDDICWALS 73 (157)
Q Consensus 65 ~eDVl~AL~ 73 (157)
++||..|++
T Consensus 473 ~eDV~~Ai~ 481 (506)
T 3f8t_A 473 PEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888874
No 101
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=27.53 E-value=1.1e+02 Score=25.91 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=49.0
Q ss_pred hCCCCcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CchhHHHHHhhCCCchhHHHHHHHHHHHH
Q 045194 21 ILPPRAK---ISKEAKQTMQECATEFISFVTGEASDKCHKENRKTV-NGDDICWALSTLGFDNYTEAIVRYLHKYR 92 (157)
Q Consensus 21 ~LP~~~k---ISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI-~~eDVl~AL~~LgF~~y~~~L~~~L~~yr 92 (157)
.+|.... ++.|-.+.+....+..-.|+........... + .. .=+..+.-|+.+|+++|++..+..+++|.
T Consensus 461 ~~p~~~~~~~~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~-~-~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 461 YIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWMSKG-G-IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCCTTCSGGGSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHC-C-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCchhccCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C-cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 3564442 7777777777666666666665555555443 2 22 25678899999999999999999999885
No 102
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=27.44 E-value=61 Score=22.54 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=28.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 26 AKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 26 ~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
..+|..+..+|+ .|...+..-|...|+.+|++.||-.-
T Consensus 78 ~~~s~~~~~~l~------------~A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 78 TQPTLSFQRVLQ------------RAVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp CEECHHHHHHHH------------HHHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred CCCCHHHHHHHH------------HHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 356777666664 45666887889999999999999653
No 103
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=26.97 E-value=2.5e+02 Score=22.76 Aligned_cols=68 Identities=9% Similarity=0.081 Sum_probs=42.4
Q ss_pred hhHHHHHHhhhCCC-CccccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc------------CCCccCchhHHHHHh
Q 045194 11 IANVGKIMKQILPP-RAKISKEAKQTMQECATE----FISFVTGEASDKCHKE------------NRKTVNGDDICWALS 73 (157)
Q Consensus 11 ~A~I~RImK~~LP~-~~kISkDA~~al~~~ate----FI~~ltseA~e~~~~~------------kRKTI~~eDVl~AL~ 73 (157)
......|++..+.. +..++.++...|.+.+.- -|..|...|...+.++ ....|+.+|+..+++
T Consensus 284 ~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~ 363 (389)
T 3vfd_A 284 EETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLK 363 (389)
T ss_dssp HHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence 34445555554432 345788877777665433 4455556665555544 456899999999998
Q ss_pred hCCCc
Q 045194 74 TLGFD 78 (157)
Q Consensus 74 ~LgF~ 78 (157)
...-.
T Consensus 364 ~~~~s 368 (389)
T 3vfd_A 364 KIKRS 368 (389)
T ss_dssp HCCCS
T ss_pred HcCCC
Confidence 76543
No 104
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=26.88 E-value=1.4e+02 Score=21.60 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=35.9
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEF-ISFVTGEASDKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateF-I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
.|....+.|+-+=. ...++.+.+...|....+.- +..| .++....-.++--+|+.+++..+|..+|+.
T Consensus 21 ~l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~ 89 (197)
T 3pm8_A 21 ELSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQ 89 (197)
T ss_dssp CCCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCC
Confidence 34445555554322 23345555544443322211 1111 233344446677899999999999999885
No 105
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.81 E-value=26 Score=24.27 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.4
Q ss_pred cCchhHHHHHhhCCCch--hHHHH
Q 045194 63 VNGDDICWALSTLGFDN--YTEAI 84 (157)
Q Consensus 63 I~~eDVl~AL~~LgF~~--y~~~L 84 (157)
=+.+||..-|+.+||++ |++..
T Consensus 30 Ws~~~V~~WL~~lgl~~~~y~~~F 53 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEEPVLLKNI 53 (103)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCChHHHHHHH
Confidence 45789999999999987 66554
No 106
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=26.81 E-value=70 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=27.4
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 26 AKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 26 ~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
..+|..+..+|+ .|...+..-+...|+.+|++.||=.
T Consensus 78 ~~~s~~~~~vL~------------~A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIE------------LSMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHH------------HHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHH------------HHHHHHHHcCCCeecHHHHHHHHHh
Confidence 356666665554 4566677788999999999999854
No 107
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=26.65 E-value=1.3e+02 Score=19.19 Aligned_cols=70 Identities=9% Similarity=0.132 Sum_probs=43.2
Q ss_pred cCchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccCchhHHHHHhhC---
Q 045194 8 LLPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFV---------TGEASDKCHKENRKTVNGDDICWALSTL--- 75 (157)
Q Consensus 8 ~LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~l---------tseA~e~~~~~kRKTI~~eDVl~AL~~L--- 75 (157)
.+...-|.++++..= ++..|+-+ +|+.++ ...+....-.++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 466777888888753 34455543 233332 2344555566777899999999999999
Q ss_pred CCchhHHHHHHHH
Q 045194 76 GFDNYTEAIVRYL 88 (157)
Q Consensus 76 gF~~y~~~L~~~L 88 (157)
|..--...+...+
T Consensus 75 ~~~~~~~~~~~~~ 87 (109)
T 3fs7_A 75 ARVLTSAETKAFL 87 (109)
T ss_dssp SCCCCHHHHHHHH
T ss_pred cccCCHHHHHHHH
Confidence 5543333444433
No 108
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=26.65 E-value=3.2e+02 Score=23.85 Aligned_cols=45 Identities=7% Similarity=-0.050 Sum_probs=33.4
Q ss_pred CccccHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhcCCCccCchhHH
Q 045194 25 RAKISKEAKQTMQECATE-------------FISFVTGEASDKCHKENRKTVNGDDIC 69 (157)
Q Consensus 25 ~~kISkDA~~al~~~ate-------------FI~~ltseA~e~~~~~kRKTI~~eDVl 69 (157)
++.++.+..+.+.+.+.. -...+...|.-.|.-.||..|+++||.
T Consensus 223 ~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 223 EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 567888888887776632 122344566777889999999999998
No 109
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=26.51 E-value=1.7e+02 Score=22.43 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC------------CCccCchhHHHHHhhCCCchhHHHHHH
Q 045194 27 KISKEAKQTMQECATE----FISFVTGEASDKCHKEN------------RKTVNGDDICWALSTLGFDNYTEAIVR 86 (157)
Q Consensus 27 kISkDA~~al~~~ate----FI~~ltseA~e~~~~~k------------RKTI~~eDVl~AL~~LgF~~y~~~L~~ 86 (157)
.++.++...|.+.+.- -|..|..+|...+.++. ...|+.+|+..|++...-.-..+.+..
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~ 283 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNS 283 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHH
Confidence 4677777766665433 23345555555555443 367999999999998776544444443
No 110
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=26.12 E-value=2e+02 Score=21.27 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 50 EASDKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 50 eA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
.+....-.++.-+|+.+++..+|..+|..
T Consensus 121 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~ 149 (220)
T 3sjs_A 121 NLFVMNARARSGTLEPHEILPALQQLGFY 149 (220)
T ss_dssp HHHHHHCCSSTTEECHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCCCCCCcHHHHHHHHHHhCCC
Confidence 45555556777889999999999988865
No 111
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=26.06 E-value=67 Score=20.62 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=43.4
Q ss_pred CchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCCccCchhHHHHHhhC---C
Q 045194 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFVT---------GEASDKCHKENRKTVNGDDICWALSTL---G 76 (157)
Q Consensus 9 LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~lt---------seA~e~~~~~kRKTI~~eDVl~AL~~L---g 76 (157)
+....|.++++..=. +..|+-+ +|+.++. ..+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYK----------RFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHH----------HHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 566778888887633 4455533 2333321 245555666777899999999999988 6
Q ss_pred CchhHHHHHHHHH
Q 045194 77 FDNYTEAIVRYLH 89 (157)
Q Consensus 77 F~~y~~~L~~~L~ 89 (157)
..--.+.+...+.
T Consensus 75 ~~~~~~~~~~~~~ 87 (109)
T 5pal_A 75 RDLNDTETKALLA 87 (109)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6543444444443
No 112
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=25.99 E-value=26 Score=26.38 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
|.-|...|...|...++.+|+.+|+..|++..
T Consensus 218 l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 218 IANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44555566666777788899999998888654
No 113
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=25.69 E-value=1.1e+02 Score=22.13 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=28.7
Q ss_pred HhcCCCccCchhHHHHHhhCCCchhHHHHHHHHHHH
Q 045194 56 HKENRKTVNGDDICWALSTLGFDNYTEAIVRYLHKY 91 (157)
Q Consensus 56 ~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~~L~~y 91 (157)
..+|+ .-+.+.++.||..+|..+.++.|+..+++-
T Consensus 58 ~r~G~-~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 58 NTEKE-NATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp HHCTT-TCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhCC-CchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34554 347889999999999999999999988754
No 114
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=25.52 E-value=70 Score=22.31 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCccCchhHHHHHh
Q 045194 49 GEASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 49 seA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
..|...+...+...|+.+|++.||-
T Consensus 92 ~~A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 92 NLCDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHH
Confidence 3556667777889999999999986
No 115
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.14 E-value=66 Score=27.88 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCCccCchhHHHHHhh
Q 045194 44 ISFVTGEASDKCHKENRKTVNGDDICWALST 74 (157)
Q Consensus 44 I~~ltseA~e~~~~~kRKTI~~eDVl~AL~~ 74 (157)
|..|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6677788888899999999999999999864
No 116
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.01 E-value=1.3e+02 Score=27.16 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHHH
Q 045194 27 KISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVR 86 (157)
Q Consensus 27 kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~ 86 (157)
+++..+..+|. .|.+.|...+...|.++|++.||=.-+=+.....|..
T Consensus 5 ~~t~~a~~~l~------------~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~ 52 (758)
T 3pxi_A 5 RFTERAQKVLA------------LAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQA 52 (758)
T ss_dssp CBCHHHHHHHH------------HHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHH
T ss_pred hhCHHHHHHHH------------HHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHH
Confidence 57778887775 4566799999999999999999866544444444443
No 117
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.81 E-value=59 Score=24.60 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCCccCchhHHHHH
Q 045194 45 SFVTGEASDKCHKENRKTVNGDDICWAL 72 (157)
Q Consensus 45 ~~ltseA~e~~~~~kRKTI~~eDVl~AL 72 (157)
.-+..+|...|...++.+|+.+|+..|+
T Consensus 226 ~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 226 ENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3444566667777888999999998886
No 118
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=24.79 E-value=1.1e+02 Score=20.54 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=19.1
Q ss_pred HHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 53 DKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 53 e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
...-.++.-.|+.+++..+|..+|..
T Consensus 92 ~~~D~d~~G~I~~~el~~~l~~~g~~ 117 (153)
T 2ovk_B 92 SMFDEDGQGFIPEDYLKDLLENMGDN 117 (153)
T ss_dssp HTTCSSCSSCCCHHHHHHHHHHSSSC
T ss_pred HHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 33334666789999999999888854
No 119
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=24.19 E-value=87 Score=24.68 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=36.2
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 9 LPIANVGKIMKQILP-PRAKISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 9 LP~A~I~RImK~~LP-~~~kISkDA~~al~~~ateFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
++...+..+++..+. .+..++.++...|.+.+.--+..+.......+. .+..+|+.+||..++...
T Consensus 178 l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~~~ 244 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLGTL 244 (373)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhCCC
Confidence 445556666665442 245688888887776654333333322222222 234568888877665544
No 120
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=24.02 E-value=40 Score=22.81 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.7
Q ss_pred ccCchhHHHHHhhCCC--chhHHHH
Q 045194 62 TVNGDDICWALSTLGF--DNYTEAI 84 (157)
Q Consensus 62 TI~~eDVl~AL~~LgF--~~y~~~L 84 (157)
.=+++||..-|+.+|| ..|++..
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F 43 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRF 43 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578999999999999 7777554
No 121
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=23.88 E-value=1.1e+02 Score=17.41 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=17.7
Q ss_pred HHHhcCCCccCchhHHHHHhhCCCc
Q 045194 54 KCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 54 ~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
..-.++.-.|+.+++..+|..+|..
T Consensus 9 ~~D~d~~G~i~~~el~~~l~~~~~~ 33 (67)
T 1tiz_A 9 KFDKNKDGKLSLDEFREVALAFSPY 33 (67)
T ss_dssp HHCTTSSSCEEHHHHHHHHHHTCTT
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 3344566678888888888888765
No 122
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=23.64 E-value=81 Score=24.43 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=42.7
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCccCchhHHHHHhhCCCc
Q 045194 9 LPIANVGKIMKQILP-PRAKISKEAKQTMQECAT---EFISFVTGEASDKCHKENRKTVNGDDICWALSTLGFD 78 (157)
Q Consensus 9 LP~A~I~RImK~~LP-~~~kISkDA~~al~~~at---eFI~~ltseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 78 (157)
++...+..+++..+. .+..++.++...|.+.+. -.+..+...+...|...+...|+.+|+..++..++.+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 344555556655442 245689999888877642 1222233333444445567789999999988876543
No 123
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=23.33 E-value=42 Score=21.66 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=18.0
Q ss_pred cCchhHHHHHhhC--CCchhHHHHH
Q 045194 63 VNGDDICWALSTL--GFDNYTEAIV 85 (157)
Q Consensus 63 I~~eDVl~AL~~L--gF~~y~~~L~ 85 (157)
=+.+||..-|+.+ ||..|++...
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~ 30 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFA 30 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3678999889986 8888877653
No 124
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.66 E-value=70 Score=25.01 Aligned_cols=67 Identities=10% Similarity=0.088 Sum_probs=40.2
Q ss_pred CchhHHHHHHhhhCC-CCccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC-CccCchhHHHHHhhCC
Q 045194 9 LPIANVGKIMKQILP-PRAKISKEAKQTMQECAT----EFISFVTGEASDKCHKENR-KTVNGDDICWALSTLG 76 (157)
Q Consensus 9 LP~A~I~RImK~~LP-~~~kISkDA~~al~~~at----eFI~~ltseA~e~~~~~kR-KTI~~eDVl~AL~~Lg 76 (157)
++...+..+++..+. .++.|+.++...|.+.+. ..++.|-.. ...+...++ ..|+.+||..++....
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~-~~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSA-SKGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHT-HHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-HHhcCCCccCccccHHHHHHHhCCCC
Confidence 444555555555432 356799999888877643 334444322 223333333 3899999998887554
No 125
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=22.05 E-value=1.7e+02 Score=19.08 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCccCchhHHHHHhh-CCCc
Q 045194 51 ASDKCHKENRKTVNGDDICWALST-LGFD 78 (157)
Q Consensus 51 A~e~~~~~kRKTI~~eDVl~AL~~-LgF~ 78 (157)
+....-.++.-.|+.+++..+|.. +|..
T Consensus 93 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 121 (153)
T 3ox6_A 93 AFREFDTNGDGEISTSELREAMRALLGHQ 121 (153)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHHHSSC
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHhcCC
Confidence 444455667778999999999988 7755
No 126
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.78 E-value=71 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCCccCchhHHHHHh
Q 045194 46 FVTGEASDKCHKENRKTVNGDDICWALS 73 (157)
Q Consensus 46 ~ltseA~e~~~~~kRKTI~~eDVl~AL~ 73 (157)
-+...|...|...++.+|+.+|+..|++
T Consensus 251 ~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 251 NLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 3445666677778888999999988863
No 127
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=21.74 E-value=1.6e+02 Score=18.67 Aligned_cols=56 Identities=9% Similarity=0.293 Sum_probs=35.8
Q ss_pred CchhHHHHHHhhhCCCCccccHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCccCchhHHHHHhhC
Q 045194 9 LPIANVGKIMKQILPPRAKISKEAKQTMQECATEFISFV---------TGEASDKCHKENRKTVNGDDICWALSTL 75 (157)
Q Consensus 9 LP~A~I~RImK~~LP~~~kISkDA~~al~~~ateFI~~l---------tseA~e~~~~~kRKTI~~eDVl~AL~~L 75 (157)
+...-|..+++..= ++..|+-+ +|+.++ ...+....-.++.-.|+.+++..+|..+
T Consensus 7 ~t~~e~~~~~~~~d-~~g~i~~~----------ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (110)
T 1pva_A 7 LKADDIKKALDAVK-AEGSFNHK----------KFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSF 71 (110)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred CCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45566777777642 34445532 233322 1245555556777899999999999998
No 128
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.66 E-value=43 Score=19.79 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=15.1
Q ss_pred CccCchhHHHHHhhCCCc
Q 045194 61 KTVNGDDICWALSTLGFD 78 (157)
Q Consensus 61 KTI~~eDVl~AL~~LgF~ 78 (157)
..++.++|..+++.+||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 356788999999999986
No 129
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=21.22 E-value=2e+02 Score=19.42 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCccCchhHHHHHhhCCCchhHHHHHHHH
Q 045194 51 ASDKCHKENRKTVNGDDICWALSTLGFDNYTEAIVRYL 88 (157)
Q Consensus 51 A~e~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~~L 88 (157)
+....-.++.-.|+.+++..+|..+|..--.+.+...+
T Consensus 106 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 143 (169)
T 3qrx_A 106 AFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMI 143 (169)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445557778999999999999998553333333333
No 130
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=21.18 E-value=90 Score=17.85 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=7.2
Q ss_pred CccCchhHHHHHhhCC
Q 045194 61 KTVNGDDICWALSTLG 76 (157)
Q Consensus 61 KTI~~eDVl~AL~~Lg 76 (157)
-.|+.+++..+|..+|
T Consensus 15 G~i~~~e~~~~l~~~~ 30 (66)
T 3li6_A 15 GAVSYEEVKAFVSKKR 30 (66)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHcc
Confidence 3444444444444443
No 131
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=20.97 E-value=95 Score=23.26 Aligned_cols=39 Identities=18% Similarity=0.038 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccCchhHHHHHhhCC
Q 045194 26 AKISKEAKQTMQECATEFISFVTGEASDKCH-KENRKTVNGDDICWALSTLG 76 (157)
Q Consensus 26 ~kISkDA~~al~~~ateFI~~ltseA~e~~~-~~kRKTI~~eDVl~AL~~Lg 76 (157)
..+|..+..+|++ |...|. .-|...|+.+||+.||-.-+
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 4588888877754 566688 88999999999999985443
No 132
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=20.91 E-value=49 Score=22.65 Aligned_cols=24 Identities=0% Similarity=-0.074 Sum_probs=19.4
Q ss_pred ccCchhHHHHHhhC--CCchhHHHHH
Q 045194 62 TVNGDDICWALSTL--GFDNYTEAIV 85 (157)
Q Consensus 62 TI~~eDVl~AL~~L--gF~~y~~~L~ 85 (157)
.=+.+||..-|+.+ ||.+|.+...
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 45789999999988 7888887654
No 133
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=20.52 E-value=1.2e+02 Score=21.14 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=14.5
Q ss_pred Cccc-ccccCchhHHHHHHhhhCC
Q 045194 1 MVEE-QDKLLPIANVGKIMKQILP 23 (157)
Q Consensus 1 m~~e-~D~~LP~A~I~RImK~~LP 23 (157)
|++. ++..+|...|..||+++|.
T Consensus 1 ~~~~~~~~~F~~~~v~~ii~~~l~ 24 (111)
T 1ygt_A 1 MDDSREESQFIVDDVSKTIKEAIE 24 (111)
T ss_dssp -------CCCCCCHHHHHHHHHHH
T ss_pred CCCcccCCCCCHHHHHHHHHHHHH
Confidence 4533 3667999999999988874
No 134
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=20.11 E-value=67 Score=23.26 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=30.2
Q ss_pred HHHhcCCCccCchhHHHHHhhCCCchhHHHHHHHHH
Q 045194 54 KCHKENRKTVNGDDICWALSTLGFDNYTEAIVRYLH 89 (157)
Q Consensus 54 ~~~~~kRKTI~~eDVl~AL~~LgF~~y~~~L~~~L~ 89 (157)
.-...|++--+.++++.||+.+|+..-++.+++.+.
T Consensus 64 W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~ 99 (112)
T 1ich_A 64 WRRRTPRREATLELLGRVLRDMDLLGCLEDIEEALC 99 (112)
T ss_dssp HHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHhcCCCCCcHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 345677888889999999999999998888888765
Done!