Query 045196
Match_columns 255
No_of_seqs 382 out of 1227
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 19:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 5.4E-20 1.9E-24 152.9 13.5 156 71-232 316-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.7 2.3E-16 8E-21 129.5 18.9 139 71-219 66-212 (451)
3 1pw4_A Glycerol-3-phosphate tr 99.7 4.6E-16 1.6E-20 127.8 16.4 180 28-215 245-434 (451)
4 3o7q_A L-fucose-proton symport 99.7 2.7E-15 9.1E-20 122.8 16.3 120 59-188 50-175 (438)
5 2cfq_A Lactose permease; trans 99.7 3.5E-15 1.2E-19 121.6 15.9 137 75-221 267-407 (417)
6 3o7q_A L-fucose-proton symport 99.6 1.9E-14 6.4E-19 117.8 19.0 171 24-207 247-425 (438)
7 4gc0_A D-xylose-proton symport 99.6 4.3E-15 1.5E-19 123.4 14.8 143 76-218 64-224 (491)
8 4aps_A DI-OR tripeptide H+ sym 99.6 1.3E-14 4.4E-19 120.6 17.4 139 65-213 49-195 (491)
9 2gfp_A EMRD, multidrug resista 99.6 5.3E-15 1.8E-19 118.7 8.8 153 58-220 23-181 (375)
10 2xut_A Proton/peptide symporte 99.5 1.3E-13 4.4E-18 115.5 13.2 129 74-212 61-196 (524)
11 4aps_A DI-OR tripeptide H+ sym 99.4 7.8E-13 2.7E-17 109.8 10.5 144 73-217 325-475 (491)
12 2gfp_A EMRD, multidrug resista 99.3 1.5E-12 5.2E-17 104.4 4.4 154 24-188 188-348 (375)
13 2cfq_A Lactose permease; trans 99.1 5.8E-12 2E-16 102.6 -2.1 176 31-215 3-188 (417)
14 2xut_A Proton/peptide symporte 98.7 3E-09 1E-13 89.0 2.4 122 98-220 374-509 (524)
15 2g9p_A Antimicrobial peptide l 75.2 1.6 5.6E-05 18.6 1.4 14 86-99 2-15 (26)
16 3j1z_P YIIP, cation efflux fam 55.5 39 0.0013 25.7 6.8 25 81-105 55-86 (306)
17 3b9w_A Ammonium transporter fa 47.8 1.1E+02 0.0036 24.6 10.3 13 129-141 258-270 (407)
18 1cmk_I CAMP-dependent protein 23.2 12 0.0004 16.7 -0.6 10 91-100 9-18 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.83 E-value=5.4e-20 Score=152.94 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH-HHHHHHhhhhh
Q 045196 71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG-VGFMAASTAFD 149 (255)
Q Consensus 71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 149 (255)
....+.++..+++.+++++++||+|||+.++.+...+.++.+.+..... .....+..++..+ ....+..+..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------TQAPGIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------cccchHHHHHHHHHHHHHHHhHHHH
Confidence 3345566788889999999999999999999988888877766654421 1122232222222 22333444567
Q ss_pred hhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--------hhcCCCchhHHHHHHHHHHHHHH-HHhccCCCC
Q 045196 150 VMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--------GRMSPSLSFLVFGALSIFSGVLS-LWLPETKNA 220 (255)
Q Consensus 150 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~ 220 (255)
+.+.+.+|++|++.|+++.|+.+..++++++++|.+... ...+....|++++++++++.++. +++||||++
T Consensus 390 ~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 889999999999999999999999999999888776542 22345667888888888887765 678999999
Q ss_pred CchHhHHhhhhh
Q 045196 221 PLYETLKQQGEE 232 (255)
Q Consensus 221 ~~~~~~~~~~~~ 232 (255)
+++|.++-.+++
T Consensus 470 tLeei~~~f~~~ 481 (491)
T 4gc0_A 470 TLEELEALWEPE 481 (491)
T ss_dssp CHHHHGGGTC--
T ss_pred CHHHHHHHhCCC
Confidence 998876554433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.74 E-value=2.3e-16 Score=129.49 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH----hcccCCCCCCCCCchHHHHHHHHHHHHHhh
Q 045196 71 FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTL----FSNNNNNKGKGGGSWPQLIIEGVGFMAAST 146 (255)
Q Consensus 71 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (255)
.......++..++.+++|+++||+|||++++++.++.+++.++..+ . .+.+.+++..++.+++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~l~G~~~~~ 135 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT----------SSIAVMFVLLFLCGWFQGM 135 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH----------SSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc----------ccHHHHHHHHHHHHHHhhh
Confidence 3344455678889999999999999999999999999998888877 5 4677777888888888888
Q ss_pred hhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcC-CCchhHHHHHHHHHHHHHH-HHhccCCC
Q 045196 147 AFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMS-PSLSFLVFGALSIFSGVLS-LWLPETKN 219 (255)
Q Consensus 147 ~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~-~~~~e~~~ 219 (255)
..+...+++.|.+|++.|+++.++.+....+|.+++|.+.+. ...+ |+..|++.++++++..++. +++||+..
T Consensus 136 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 889999999999999999999999999999999999998873 4456 8888888888777665554 56676543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.70 E-value=4.6e-16 Score=127.76 Aligned_cols=180 Identities=15% Similarity=-0.008 Sum_probs=122.9
Q ss_pred hHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHH---HHHHHHHHHHHHHHHHHHHhhc--chhHHHH
Q 045196 28 NESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFS---VALNALMEIPAVVIGTVLLSFT--NRRLLLS 101 (255)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~--grr~~l~ 101 (255)
.+++++++.++...+..++..+.........+.++.+ ++.+.... ....+++.+++.++.++++||+ |||+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 4667788776655554444444433333333444444 66665433 3344567888999999999999 9999888
Q ss_pred HHHHHHH-HHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH-hh
Q 045196 102 RSAYVAG-SASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML-GA 179 (255)
Q Consensus 102 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~ 179 (255)
++..+.. ++.+++.+. +..+.+...+..++.+++.+...+....+..|.+|++.|+++.|+.+....+ |+
T Consensus 325 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~ 396 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN--------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396 (451)
T ss_dssp HHHHHHHHHHHHHTTSC--------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHH
Confidence 7776665 333333322 1124455555556666666677778889999999999999999999999999 99
Q ss_pred hhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196 180 SVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWLP 215 (255)
Q Consensus 180 ~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
.++|.+.+. ...++...+++.+++.+++.++.++++
T Consensus 397 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999884 334566677777777777766655543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.67 E-value=2.7e-15 Score=122.79 Aligned_cols=120 Identities=6% Similarity=-0.080 Sum_probs=99.9
Q ss_pred eeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH---HHhcccCCCCCCCCCchH
Q 045196 59 QLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILC---TLFSNNNNNKGKGGGSWP 132 (255)
Q Consensus 59 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 132 (255)
+.+.+.++.+...... ...++..++.++.|+++||+|||+.++++.++.++..++. ... .+.+.
T Consensus 50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~ 119 (438)
T 3o7q_A 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI----------MNYTL 119 (438)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT----------TCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc----------ccHHH
Confidence 3455566766544433 3445777899999999999999999999999998888877 444 57778
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh
Q 045196 133 QLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV 188 (255)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~ 188 (255)
+++..++.+++.+...+...++++|.+|++.|+.+.++.+....+|.+++|.+.+.
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999998874
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.66 E-value=3.5e-15 Score=121.65 Aligned_cols=137 Identities=9% Similarity=0.086 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhh
Q 045196 75 LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIY 154 (255)
Q Consensus 75 ~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (255)
+..++.+++.++.++++||+|||+++..+..+.++..++..+. .+.+..++..++.+++.....+..+.+
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------TSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC----------CSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999888877776655444333 234444444444444444455667889
Q ss_pred hccccchhcHHHHHHHH-HHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH-HhccCCCCC
Q 045196 155 CVELFPTNVRNIAVSFL-RQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL-WLPETKNAP 221 (255)
Q Consensus 155 ~~e~~p~~~r~~~~~~~-~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~ 221 (255)
++|.+|++.|+++.++. +...++|++++|.+.+. ...++...|.+.+++.+++.++.+ ..||+++.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 99999999999999995 77778999999999884 223444567777777777766544 346655443
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.64 E-value=1.9e-14 Score=117.77 Aligned_cols=171 Identities=11% Similarity=0.039 Sum_probs=114.1
Q ss_pred CccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeee-ecc-cCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhH
Q 045196 24 SDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLN-VGN-LNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRL 98 (255)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~ 98 (255)
.+.++++++++|..+...+..++............+.+ ..+ ++.+.... ..+..++.+++.++.++++||+|||+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 326 (438)
T 3o7q_A 247 FSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK 326 (438)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34578889999886665555444444333322222333 333 36655433 33345677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHh
Q 045196 99 LLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLG 178 (255)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g 178 (255)
.+.++.++.++..+++.+. .+.+. +...++.+++.+...+..+++..|.+|++ |+++.++.. .+.+|
T Consensus 327 ~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 327 VLAAYALIAMALCLISAFA----------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHHHHHHHHHHHHHHc----------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 9999888887776666554 23333 33335555667777789999999999977 888888877 66789
Q ss_pred hhhhhhHHHh--hhcC-CCchhHHHHHHHHHH
Q 045196 179 ASVSPLLVVV--GRMS-PSLSFLVFGALSIFS 207 (255)
Q Consensus 179 ~~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~ 207 (255)
++++|.+.+. ...+ +...+.+.+++.++.
T Consensus 394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 9999999884 3344 566666554444333
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.64 E-value=4.3e-15 Score=123.42 Aligned_cols=143 Identities=17% Similarity=0.043 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCC--------CCCCchHHHHHHHHHHHHHhhh
Q 045196 76 NALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKG--------KGGGSWPQLIIEGVGFMAASTA 147 (255)
Q Consensus 76 ~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
..++.++|.+++|+++||+|||+.++++.++..++.++.++......... -..+.+.+++.+++.+++.++.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999888887764310000000 0135667888999999999999
Q ss_pred hhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHhhh----------cCCCchhHHHHHHHHHHHHHHHHhccC
Q 045196 148 FDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVVGR----------MSPSLSFLVFGALSIFSGVLSLWLPET 217 (255)
Q Consensus 148 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~e~ 217 (255)
.+....+++|..|++.|+...++.+....+|.++++.+..... .+++..+.+.....++..+..+++||+
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS 223 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence 9999999999999999999999998888888777766654211 112222333333444444444567886
Q ss_pred C
Q 045196 218 K 218 (255)
Q Consensus 218 ~ 218 (255)
.
T Consensus 224 p 224 (491)
T 4gc0_A 224 P 224 (491)
T ss_dssp H
T ss_pred h
Confidence 3
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.64 E-value=1.3e-14 Score=120.58 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=110.0
Q ss_pred cCchhHHHH---HHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHH
Q 045196 65 LNFNLYFSV---ALNALMEIPAVVIGTVLLSF-TNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVG 140 (255)
Q Consensus 65 ~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr-~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (255)
++.+..... ....++..++.+++|+++|| +|||+++.++.++.+++.++..+. ++.+..++..++.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~ 118 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP----------FGASALFGSIILI 118 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC----------CSTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHH
Confidence 666654443 33456778899999999999 899999999999888888777665 4667777788888
Q ss_pred HHHHhhhhhhhhhhhccccchhc--HHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHH
Q 045196 141 FMAASTAFDVMYIYCVELFPTNV--RNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLW 213 (255)
Q Consensus 141 ~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (255)
+++.+...+...+++.|.+|++. |+.+.++.+....+|..++|.+.+. ...+++..|++.++..+++.++.++
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999988 7778888889999999999999884 3356777787777666666555443
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.57 E-value=5.3e-15 Score=118.73 Aligned_cols=153 Identities=13% Similarity=0.054 Sum_probs=118.6
Q ss_pred eeeeecccCchhHHHHH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHH
Q 045196 58 IQLNVGNLNFNLYFSVA---LNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQL 134 (255)
Q Consensus 58 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (255)
.+.+.++++.+...... ...++..++.++.|+++||+|||+.+.++..+.++..++..+. ++.+..+
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~l~ 92 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----------SSLTVLI 92 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------HHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------ccHHHHH
Confidence 34456667776554433 3446777889999999999999999999999988888887776 3667777
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHH-H
Q 045196 135 IIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVL-S 211 (255)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~ 211 (255)
+..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+. ...+++..+++.+++.++..+. .
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888889999999999999999999999999999999999999884 2235666777777766665553 3
Q ss_pred HHhccCCCC
Q 045196 212 LWLPETKNA 220 (255)
Q Consensus 212 ~~~~e~~~~ 220 (255)
+++||++++
T Consensus 173 ~~~~~~~~~ 181 (375)
T 2gfp_A 173 RWMPETRPV 181 (375)
T ss_dssp CSSCCCSTT
T ss_pred HHCcccCCC
Confidence 456776443
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.52 E-value=1.3e-13 Score=115.50 Aligned_cols=129 Identities=8% Similarity=0.016 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC-CchHHHHHHHHHHHHHhhhhhhh
Q 045196 74 ALNALMEIPAVVIGTVLLSFT-NRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGG-GSWPQLIIEGVGFMAASTAFDVM 151 (255)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~-grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 151 (255)
....++..++.+++|+++||+ |||+++.++.++.++..++..+. . +.+..++..++.+++.+...+..
T Consensus 61 ~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----------EHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp HHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----------SSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHhccccchhH
Confidence 344567788899999999999 99999999998888888777765 3 66677777788888888888999
Q ss_pred hhhhccccchhcHHHHHHH---HHHHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH
Q 045196 152 YIYCVELFPTNVRNIAVSF---LRQALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL 212 (255)
Q Consensus 152 ~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 212 (255)
.++++|.+|++.|+++.+. .+....+|.+++|.+.+. ...++...|++.+++.+++.++.+
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999766665 888888999999988774 234566677777766665554443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.42 E-value=7.8e-13 Score=109.83 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhh
Q 045196 73 VALNALMEIPAVVIGTVLLSFTNRRLLLS-----RSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTA 147 (255)
Q Consensus 73 ~~~~~~~~~~~~~~~g~l~dr~grr~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (255)
.....+..+++.++.++++||+|||+... ++..+++++.+++........ .....+.+..+...++.+++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 325 QSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG-TSGKVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC-CCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred hccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccHHHHHHHHHHHHHHHHHH
Confidence 34455677778899999999999986544 555555555544443211110 011234455555666666666777
Q ss_pred hhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh-hhcCCCchhHHHHHHHHHHHHHHHHh-ccC
Q 045196 148 FDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV-GRMSPSLSFLVFGALSIFSGVLSLWL-PET 217 (255)
Q Consensus 148 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~ 217 (255)
.+..+.++.|.+|++.|+++.|+.+....+|++++|.+.+. .+.+....+.+.+++++++.++.+++ ++.
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999884 44455667777777777766655444 443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=1.5e-12 Score=104.36 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=95.9
Q ss_pred CccchHHhhcChhHHHHHHHHHHHHHHHHHHhhheeeeecc-cCchhHHHH---HHHHHHHHHHHHHHHHHHhhcchhHH
Q 045196 24 SDNKNESLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVGN-LNFNLYFSV---ALNALMEIPAVVIGTVLLSFTNRRLL 99 (255)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~g~l~dr~grr~~ 99 (255)
.+.++++++++|..+...+..++..+.........+.+..+ .+.+..... ....++.+++.++.+++.||+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~- 266 (375)
T 2gfp_A 188 LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM- 266 (375)
T ss_dssp TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34567788888876655555444444444444444444444 555544333 3344567778888888888888732
Q ss_pred HHHHHHH-HHHHHH--HHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHH
Q 045196 100 LSRSAYV-AGSASI--LCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALM 176 (255)
Q Consensus 100 l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 176 (255)
..+... ...... ...... ..+.+..++..++.+++.+...+....+..|.+| +.|+++.|+.+....
T Consensus 267 -~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~ 336 (375)
T 2gfp_A 267 -WQSVICCLLAGLLMWIPDWFG--------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQN 336 (375)
T ss_dssp -HHHHHHHHHTSSSSSHHHHHH--------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhhc--------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHH
Confidence 222222 111111 111110 0133444455566666777778899999999999 789999999999999
Q ss_pred HhhhhhhhHHHh
Q 045196 177 LGASVSPLLVVV 188 (255)
Q Consensus 177 ~g~~~~p~~~~~ 188 (255)
+|+.++|.+.+.
T Consensus 337 ~g~~~~~~~~g~ 348 (375)
T 2gfp_A 337 IGSGVLASLSAM 348 (375)
T ss_dssp HHHHCCSTTCTH
T ss_pred HHHHHHHHHHHH
Confidence 999999988774
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.07 E-value=5.8e-12 Score=102.56 Aligned_cols=176 Identities=10% Similarity=-0.091 Sum_probs=89.4
Q ss_pred hhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhH---HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 045196 31 LWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLY---FSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYV 106 (255)
Q Consensus 31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~ 106 (255)
.+|+|+++......+...+........++.++. .++.+.. .......++..++.+++|+++||+|||++++++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 577877655444433333333332223344443 3565443 333445567888999999999999999999887776
Q ss_pred HHHHHHHH---HHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccch--hcHHHHHHHHHHHHHHhhhh
Q 045196 107 AGSASILC---TLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPT--NVRNIAVSFLRQALMLGASV 181 (255)
Q Consensus 107 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~ 181 (255)
.++..... .+.... ..... ....+.+...+...+.......+..+. +.|+.+.+.....+.+|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~ 153 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGPLL------QYNIL---VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp TTSCHHHHHHHTHHHHH------HTTCC---HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHH------HHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 54422111 111000 00111 111111111111112222223333332 34566667777777788888
Q ss_pred hhhHHHh-hhcCCCchhHHHHHHHHHHHHHHHHhc
Q 045196 182 SPLLVVV-GRMSPSLSFLVFGALSIFSGVLSLWLP 215 (255)
Q Consensus 182 ~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (255)
+|.+.++ ...+++..|++.++..++..+..++.+
T Consensus 154 ~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp HHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcC
Confidence 8888773 334556666655554443333333333
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.73 E-value=3e-09 Score=89.00 Aligned_cols=122 Identities=10% Similarity=0.108 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHH
Q 045196 98 LLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALML 177 (255)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~ 177 (255)
+.+.++.++.+++.+++.+..... +.....+.+..++..++.+++.+...+..+.++.|..|++.|++++|+.+....+
T Consensus 374 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 452 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVGTIQLMM-DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTV 452 (524)
T ss_dssp HHHHTHHHHHHHHHHTTTTTTTTT-TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHH
Confidence 345556655555554443321000 0001134555555666667777777789999999999999999999999999999
Q ss_pred hhhhhhhHHHhhhcC----C---------CchhHHHHHHHHHHHHHHH-HhccCCCC
Q 045196 178 GASVSPLLVVVGRMS----P---------SLSFLVFGALSIFSGVLSL-WLPETKNA 220 (255)
Q Consensus 178 g~~~~p~~~~~~~~~----~---------~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 220 (255)
|++++|.+.+..... + ...|++.+++++++.++.+ +.++.+++
T Consensus 453 g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (524)
T 2xut_A 453 GNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQ 509 (524)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998843210 0 1125556666666655543 33554433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=75.20 E-value=1.6 Score=18.56 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=11.2
Q ss_pred HHHHHHhhcchhHH
Q 045196 86 IGTVLLSFTNRRLL 99 (255)
Q Consensus 86 ~~g~l~dr~grr~~ 99 (255)
++|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999864
No 16
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=55.47 E-value=39 Score=25.74 Aligned_cols=25 Identities=8% Similarity=-0.191 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhh-------cchhHHHHHHHH
Q 045196 81 IPAVVIGTVLLSF-------TNRRLLLSRSAY 105 (255)
Q Consensus 81 ~~~~~~~g~l~dr-------~grr~~l~~~~~ 105 (255)
.+..+++-+++.| ||..|.=.++.+
T Consensus 55 ~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al 86 (306)
T 3j1z_P 55 SIINFIAIRYAIVPADHDHRYGHGKAEPLAAL 86 (306)
T ss_dssp HHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCCCchhhHHHHHHH
Confidence 3344555566654 565554333333
No 17
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=47.81 E-value=1.1e+02 Score=24.60 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=5.2
Q ss_pred CchHHHHHHHHHH
Q 045196 129 GSWPQLIIEGVGF 141 (255)
Q Consensus 129 ~~~~~~~~~~~~~ 141 (255)
++|..++..++.+
T Consensus 258 ~p~~A~iIG~iaG 270 (407)
T 3b9w_A 258 GPVGAFVIGLLGG 270 (407)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444443333333
No 18
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=23.15 E-value=12 Score=16.69 Aligned_cols=10 Identities=30% Similarity=0.202 Sum_probs=7.1
Q ss_pred HhhcchhHHH
Q 045196 91 LSFTNRRLLL 100 (255)
Q Consensus 91 ~dr~grr~~l 100 (255)
+||-|||..+
T Consensus 9 ~~RtGRRNAl 18 (26)
T 1cmk_I 9 SGRTGRRNAI 18 (26)
T ss_pred cCcccccccc
Confidence 4788888653
Done!