Query 045196
Match_columns 255
No_of_seqs 382 out of 1227
Neff 11.2
Searched_HMMs 13730
Date Mon Mar 25 19:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.7 1.8E-16 1.3E-20 127.8 19.0 149 62-216 51-206 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.6 8.3E-15 6.1E-19 116.1 18.5 137 74-220 266-406 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.6 1.2E-14 8.5E-19 117.0 17.8 183 27-214 241-430 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 99.3 3.1E-12 2.3E-16 101.0 10.7 180 30-219 2-193 (417)
5 d2axti1 f.23.37.1 (I:1-35) Pho 15.4 55 0.004 14.4 2.9 18 79-96 13-30 (35)
6 d2nr9a1 f.51.1.1 (A:4-192) Glp 9.0 90 0.0065 19.9 2.3 22 78-99 167-188 (189)
7 d3b60a2 f.37.1.1 (A:10-328) Mu 7.0 2.4E+02 0.017 18.7 4.1 12 38-49 15-26 (319)
8 d2rk5a1 d.145.1.4 (A:5-88) Put 5.5 85 0.0062 16.9 0.6 11 86-96 35-45 (84)
9 d3b45a1 f.51.1.1 (A:91-270) Gl 5.2 3.6E+02 0.026 16.4 5.3 36 79-114 63-99 (180)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 4.9 1.6E+02 0.012 11.9 3.2 14 204-217 12-26 (30)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.73 E-value=1.8e-16 Score=127.82 Aligned_cols=149 Identities=11% Similarity=0.056 Sum_probs=112.8
Q ss_pred ecccCchh---HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHH
Q 045196 62 VGNLNFNL---YFSVALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEG 138 (255)
Q Consensus 62 ~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (255)
+.+.|.+. ........++..++.+++|+++||+|||+++.++.++.+++.++..+.... ..+.+..++..+
T Consensus 51 ~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 124 (447)
T d1pw4a_ 51 LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA------TSSIAVMFVLLF 124 (447)
T ss_dssp TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH------HSSSSHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh------hhhHHHHHHHHH
Confidence 34556543 333444556778899999999999999999999999888887776654211 135667777788
Q ss_pred HHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHhhhhhhhHHHh---hhcCCCchhHHHHHHHHHHHHHHH-Hh
Q 045196 139 VGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLGASVSPLLVVV---GRMSPSLSFLVFGALSIFSGVLSL-WL 214 (255)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~ 214 (255)
+.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+. ...+|+..+++.+.+.++..++.+ ++
T Consensus 125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhc
Confidence 88888888889999999999999999999999999999999999887763 223567777777777666655544 44
Q ss_pred cc
Q 045196 215 PE 216 (255)
Q Consensus 215 ~e 216 (255)
++
T Consensus 205 ~~ 206 (447)
T d1pw4a_ 205 RD 206 (447)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.64 E-value=8.3e-15 Score=116.09 Aligned_cols=137 Identities=9% Similarity=0.084 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhh
Q 045196 74 ALNALMEIPAVVIGTVLLSFTNRRLLLSRSAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYI 153 (255)
Q Consensus 74 ~~~~~~~~~~~~~~g~l~dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
....++..++..+.+++.||.|||+.+.++..+.++..+.+.+. .+.+..++..++.+++.+...+....
T Consensus 266 ~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (417)
T d1pv7a_ 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------TSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc----------cccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33445677788999999999999999999998888877777665 46666677777777777888899999
Q ss_pred hhccccchhcHHHHHHHHH-HHHHHhhhhhhhHHHh--hhcCCCchhHHHHHHHHHHHHHHH-HhccCCCC
Q 045196 154 YCVELFPTNVRNIAVSFLR-QALMLGASVSPLLVVV--GRMSPSLSFLVFGALSIFSGVLSL-WLPETKNA 220 (255)
Q Consensus 154 ~~~e~~p~~~r~~~~~~~~-~~~~~g~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 220 (255)
++.|.+|++.|+++.++.. ....+|.+++|.+.++ ...++...+++.+++.++..++.+ .++++++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 9999999999999999865 4556899999998874 445666778888877777666554 44544443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.62 E-value=1.2e-14 Score=117.05 Aligned_cols=183 Identities=15% Similarity=0.023 Sum_probs=111.0
Q ss_pred chHHhhcChhHHHHHHHHHHHHHHHH-HHhhheeeeecccCchhHHH---HHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 045196 27 KNESLWGTKWAAKRLIMVMTAGFGVG-FVYYGIQLNVGNLNFNLYFS---VALNALMEIPAVVIGTVLLSFTNRRLLLSR 102 (255)
Q Consensus 27 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~dr~grr~~l~~ 102 (255)
..+..++++..+......++...... ...+...+..+..+.+.... ..+..+..+++.++.|+++||++||+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (447)
T d1pw4a_ 241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 320 (447)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence 35566777765444433333333332 22222223333445544333 344556778899999999999998765444
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCchHHHHHHHHHHHHHhhhhhhhhhhhccccchhcHHHHHHHHHHHHHHh-hhh
Q 045196 103 SAYVAGSASILCTLFSNNNNNKGKGGGSWPQLIIEGVGFMAASTAFDVMYIYCVELFPTNVRNIAVSFLRQALMLG-ASV 181 (255)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g-~~~ 181 (255)
......+........... ...+.+...+..++.+++..+..+..+.+..|.+|++.|+++.|+.+..++++ .++
T Consensus 321 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~ 395 (447)
T d1pw4a_ 321 GVFFMTLVTIATIVYWMN-----PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395 (447)
T ss_dssp HHHHHHHHHHHHHHTTSC-----CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333332222222100 12344555555566666666777888999999999999999999999988875 566
Q ss_pred hhhHHHh--hhcCCCchhHHHHHHHHHHHHHHHHh
Q 045196 182 SPLLVVV--GRMSPSLSFLVFGALSIFSGVLSLWL 214 (255)
Q Consensus 182 ~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (255)
+|.+.+. ...++...+++.+++++++.++...+
T Consensus 396 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 7888774 34456666777777666666555433
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.34 E-value=3.1e-12 Score=100.95 Aligned_cols=180 Identities=10% Similarity=-0.087 Sum_probs=98.0
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHHHhhheeeeec-ccCchhHHHHHHH---HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 045196 30 SLWGTKWAAKRLIMVMTAGFGVGFVYYGIQLNVG-NLNFNLYFSVALN---ALMEIPAVVIGTVLLSFTNRRLLLSRSAY 105 (255)
Q Consensus 30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~g~l~dr~grr~~l~~~~~ 105 (255)
+.+|||++|......++..+........++.++. ..|.+....+.+. .++..++.++.|+++||+|||+.++++..
T Consensus 2 ~~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~ 81 (417)
T d1pv7a_ 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred CcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3578888776655555555554444434444443 4677765555444 45777889999999999999999998888
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCchHH----HHHHHHHHHHHhhhhhhhhhhhccccch--hcHHHHHHHHHHHHHHhh
Q 045196 106 VAGSASILCTLFSNNNNNKGKGGGSWPQ----LIIEGVGFMAASTAFDVMYIYCVELFPT--NVRNIAVSFLRQALMLGA 179 (255)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~ 179 (255)
+..++..+..... ..... +....+.+...+...........+..+. +.+....+........+.
T Consensus 82 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (417)
T d1pv7a_ 82 GMLVMFAPFFIFI----------FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGW 151 (417)
T ss_dssp HHHHTHHHHHHHT----------HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh----------hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccc
Confidence 7777766665542 11111 1112222222222222222222222222 234445566666666777
Q ss_pred hhhhhHHHh-hhcCCCchhHHHHHHHHHHHHH-HHHhccCCC
Q 045196 180 SVSPLLVVV-GRMSPSLSFLVFGALSIFSGVL-SLWLPETKN 219 (255)
Q Consensus 180 ~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~ 219 (255)
.++|.+.+. ....+...+........+..++ .+..+++..
T Consensus 152 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T d1pv7a_ 152 ALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHhccccc
Confidence 777777763 3333444444444444443333 344455443
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.38 E-value=55 Score=14.35 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhcch
Q 045196 79 MEIPAVVIGTVLLSFTNR 96 (255)
Q Consensus 79 ~~~~~~~~~g~l~dr~gr 96 (255)
..+++-+++|+++.-=+|
T Consensus 13 ~fFv~lFiFGFLSnDP~R 30 (35)
T d2axti1 13 TFFVLLFVFGFLSGDPAR 30 (35)
T ss_dssp HHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhhccCCCCC
Confidence 344555666777654433
No 6
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=9.04 E-value=90 Score=19.89 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhcchhHH
Q 045196 78 LMEIPAVVIGTVLLSFTNRRLL 99 (255)
Q Consensus 78 ~~~~~~~~~~g~l~dr~grr~~ 99 (255)
+++++..++.+++..|..||++
T Consensus 167 l~G~l~G~~~g~~~~~~~k~~~ 188 (189)
T d2nr9a1 167 ISGLIVGLIWGFIDSKLRKNSL 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccccc
Confidence 4556666777888888777763
No 7
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.03 E-value=2.4e+02 Score=18.67 Aligned_cols=12 Identities=25% Similarity=0.080 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 045196 38 AKRLIMVMTAGF 49 (255)
Q Consensus 38 ~~~~~~~~~~~~ 49 (255)
++.++..++...
T Consensus 15 k~~l~~~~i~~~ 26 (319)
T d3b60a2 15 KAGLIVAGIALI 26 (319)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 8
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=5.49 E-value=85 Score=16.88 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=5.4
Q ss_pred HHHHHHhhcch
Q 045196 86 IGTVLLSFTNR 96 (255)
Q Consensus 86 ~~g~l~dr~gr 96 (255)
++|++.+++||
T Consensus 35 lgG~v~~~lg~ 45 (84)
T d2rk5a1 35 IAGFYLTGVGT 45 (84)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHhCc
Confidence 34455555554
No 9
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=5.15 E-value=3.6e+02 Score=16.43 Aligned_cols=36 Identities=6% Similarity=-0.201 Sum_probs=19.6
Q ss_pred HHHHHHHHHH-HHHhhcchhHHHHHHHHHHHHHHHHH
Q 045196 79 MEIPAVVIGT-VLLSFTNRRLLLSRSAYVAGSASILC 114 (255)
Q Consensus 79 ~~~~~~~~~g-~l~dr~grr~~l~~~~~~~~~~~~~~ 114 (255)
.+++.-...| .+-+++|+|+.+.+..+...+..+..
T Consensus 63 ~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~ 99 (180)
T d3b45a1 63 FNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQ 99 (180)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHH
Confidence 3444444445 55556898887655554444444433
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.88 E-value=1.6e+02 Score=11.91 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=5.6
Q ss_pred HHHHHHHH-HHhccC
Q 045196 204 SIFSGVLS-LWLPET 217 (255)
Q Consensus 204 ~~~~~~~~-~~~~e~ 217 (255)
|++++.+. .+++|.
T Consensus 12 c~i~lfffaiffrep 26 (30)
T d2axtt1 12 CIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 44443332 344443
Done!