Query 045199
Match_columns 82
No_of_seqs 57 out of 59
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 10:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06472 ACD_ScHsp26_like Alpha 99.2 2.1E-11 4.6E-16 77.1 3.0 36 33-68 57-92 (92)
2 PRK11597 heat shock chaperone 99.1 1.1E-10 2.4E-15 82.1 4.5 42 34-77 89-135 (142)
3 PRK10743 heat shock protein Ib 99.1 1.4E-10 3E-15 80.6 4.6 42 33-76 90-136 (137)
4 PF00011 HSP20: Hsp20/alpha cr 99.1 2.4E-10 5.2E-15 71.7 4.4 38 33-70 52-89 (102)
5 cd06476 ACD_HspB2_like Alpha c 99.1 1.3E-10 2.8E-15 74.6 3.1 36 33-68 47-83 (83)
6 cd06498 ACD_alphaB-crystallin_ 99.0 1.4E-10 3.1E-15 74.2 3.0 34 36-69 50-84 (84)
7 cd06497 ACD_alphaA-crystallin_ 99.0 1.7E-10 3.7E-15 73.9 3.0 32 37-68 54-86 (86)
8 cd06481 ACD_HspB9_like Alpha c 99.0 3.1E-10 6.7E-15 72.9 2.8 35 34-68 52-87 (87)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.0 4E-10 8.6E-15 71.5 2.9 32 37-68 51-83 (83)
10 cd06471 ACD_LpsHSP_like Group 99.0 4E-10 8.8E-15 70.7 2.8 34 34-68 60-93 (93)
11 cd06464 ACD_sHsps-like Alpha-c 99.0 4E-10 8.8E-15 67.2 2.7 40 29-68 49-88 (88)
12 cd06526 metazoan_ACD Alpha-cry 98.9 5.8E-10 1.3E-14 69.5 2.8 34 35-68 49-83 (83)
13 COG0071 IbpA Molecular chapero 98.9 1.1E-09 2.3E-14 74.8 4.0 38 34-71 98-135 (146)
14 cd06479 ACD_HspB7_like Alpha c 98.9 6.9E-10 1.5E-14 71.4 2.8 35 34-68 46-81 (81)
15 cd06475 ACD_HspB1_like Alpha c 98.9 1.7E-09 3.8E-14 69.3 2.7 32 36-67 53-85 (86)
16 cd06477 ACD_HspB3_Like Alpha c 98.7 1E-08 2.3E-13 66.3 3.3 32 36-67 50-82 (83)
17 cd06482 ACD_HspB10 Alpha cryst 98.7 7.9E-09 1.7E-13 67.5 2.4 34 34-67 52-86 (87)
18 cd06470 ACD_IbpA-B_like Alpha- 98.7 2.3E-08 4.9E-13 63.7 3.3 34 33-68 57-90 (90)
19 cd06480 ACD_HspB8_like Alpha-c 98.6 4.7E-08 1E-12 64.7 3.1 32 36-67 58-90 (91)
20 cd00298 ACD_sHsps_p23-like Thi 98.5 7.2E-08 1.6E-12 54.3 2.8 38 31-68 43-80 (80)
21 KOG3591 Alpha crystallins [Pos 98.5 1.3E-07 2.9E-12 68.4 3.7 48 32-79 111-164 (173)
22 KOG0710 Molecular chaperone (s 98.3 4.6E-07 9.9E-12 65.7 3.0 38 34-71 145-182 (196)
23 cd06469 p23_DYX1C1_like p23_li 98.0 7.6E-06 1.7E-10 49.1 3.8 36 36-71 36-71 (78)
24 cd06463 p23_like Proteins cont 97.7 5E-05 1.1E-09 44.3 3.6 38 34-71 39-76 (84)
25 cd06466 p23_CS_SGT1_like p23_l 96.8 0.0018 3.8E-08 39.0 3.4 37 35-71 41-77 (84)
26 PF05455 GvpH: GvpH; InterPro 93.2 0.12 2.6E-06 38.6 3.6 44 12-71 127-170 (177)
27 PF04969 CS: CS domain; Inter 93.0 0.17 3.7E-06 29.2 3.3 33 36-68 47-79 (79)
28 PF08190 PIH1: pre-RNA process 92.8 0.15 3.3E-06 37.5 3.7 31 37-67 295-327 (328)
29 cd06465 p23_hB-ind1_like p23_l 87.1 0.89 1.9E-05 29.2 3.2 33 38-70 46-78 (108)
30 cd06489 p23_CS_hSgt1_like p23_ 86.8 1.1 2.3E-05 27.5 3.3 35 37-71 43-77 (84)
31 cd06488 p23_melusin_like p23_l 82.2 2 4.3E-05 27.0 3.1 36 36-71 44-80 (87)
32 cd06464 ACD_sHsps-like Alpha-c 80.8 2.3 4.9E-05 24.9 2.8 33 36-69 7-39 (88)
33 cd06467 p23_NUDC_like p23_like 80.2 2.1 4.4E-05 25.8 2.6 36 36-71 41-77 (85)
34 cd06471 ACD_LpsHSP_like Group 78.5 3 6.4E-05 25.9 3.0 34 35-69 9-42 (93)
35 cd06526 metazoan_ACD Alpha-cry 78.1 3 6.5E-05 25.7 2.9 33 37-70 8-40 (83)
36 PF06261 LktC: Actinobacillus 70.0 1.6 3.4E-05 32.1 0.2 24 54-78 60-83 (150)
37 cd06470 ACD_IbpA-B_like Alpha- 66.3 9.6 0.00021 24.0 3.2 33 35-68 10-42 (90)
38 cd06493 p23_NUDCD1_like p23_NU 58.0 18 0.0004 22.3 3.4 33 39-71 44-77 (85)
39 PF14814 UB2H: Bifunctional tr 54.5 13 0.00027 23.6 2.3 29 38-66 43-72 (85)
40 cd06468 p23_CacyBP p23_like do 49.9 27 0.00058 21.3 3.1 35 37-71 50-85 (92)
41 cd06492 p23_mNUDC_like p23-lik 44.6 26 0.00055 22.3 2.5 34 38-71 45-79 (87)
42 PF09972 DUF2207: Predicted me 44.4 60 0.0013 24.7 4.8 49 29-77 125-185 (511)
43 cd06490 p23_NCB5OR p23_like do 41.6 57 0.0012 20.5 3.8 33 38-71 46-80 (87)
44 PF07683 CobW_C: Cobalamin syn 40.0 15 0.00033 22.2 0.9 25 39-63 3-30 (94)
45 PF13600 DUF4140: N-terminal d 39.0 44 0.00095 21.2 3.0 29 31-60 18-47 (104)
46 PF00970 FAD_binding_6: Oxidor 38.3 35 0.00076 20.6 2.4 36 33-69 30-70 (99)
47 PF03153 TFIIA: Transcription 34.9 18 0.0004 27.8 0.8 37 5-64 323-359 (375)
48 PF04798 Baculo_19: Baculoviru 32.4 25 0.00055 25.8 1.2 20 22-41 56-77 (146)
49 PF00339 Arrestin_N: Arrestin 31.6 32 0.0007 21.6 1.5 26 30-56 87-114 (149)
50 cd06494 p23_NUDCD2_like p23-li 30.2 58 0.0013 21.2 2.5 29 43-71 54-83 (93)
51 cd06482 ACD_HspB10 Alpha cryst 30.0 89 0.0019 20.2 3.3 37 32-69 4-40 (87)
52 PLN03088 SGT1, suppressor of 26.4 88 0.0019 24.1 3.3 34 37-70 202-235 (356)
53 PF06029 AlkA_N: AlkA N-termin 24.9 1.2E+02 0.0027 20.5 3.5 13 35-47 32-44 (116)
54 PF14558 TRP_N: ML-like domain 24.7 90 0.0019 21.4 2.8 43 27-69 70-121 (141)
55 PF07699 GCC2_GCC3: GCC2 and G 23.8 35 0.00075 19.3 0.5 10 30-39 11-20 (48)
56 PF09953 DUF2187: Uncharacteri 23.7 68 0.0015 20.3 1.9 20 56-76 11-30 (57)
57 PF07629 DUF1590: Protein of u 23.7 64 0.0014 18.6 1.6 23 27-49 1-23 (32)
58 PF14900 DUF4493: Domain of un 23.6 2E+02 0.0043 20.8 4.5 59 16-76 45-104 (235)
59 PF03762 VOMI: Vitelline membr 22.3 43 0.00093 24.6 0.9 24 27-52 76-99 (176)
60 cd06200 SiR_like1 Cytochrome p 21.8 1.5E+02 0.0032 21.3 3.5 34 35-69 34-69 (245)
61 PF08308 PEGA: PEGA domain; I 21.7 66 0.0014 18.8 1.5 19 33-51 32-50 (71)
62 PF00020 TNFR_c6: TNFR/NGFR cy 21.5 40 0.00088 18.2 0.5 9 33-41 1-9 (39)
63 TIGR01633 phi3626_gp14_N putat 20.8 73 0.0016 20.1 1.6 13 36-48 110-122 (124)
64 PF13715 DUF4480: Domain of un 20.2 1.1E+02 0.0023 18.2 2.2 33 14-51 27-59 (88)
No 1
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.16 E-value=2.1e-11 Score=77.07 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=34.6
Q ss_pred CCCCceEEEEeCCCCCCcccccccccCceEEEEeec
Q 045199 33 CPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKK 68 (82)
Q Consensus 33 CPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK 68 (82)
-..|+|+|+|+||.+||++.++|+|.||||++.+||
T Consensus 57 ~~~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~lPK 92 (92)
T cd06472 57 RSSGRFVRRFRLPENADADEVKAFLENGVLTVTVPK 92 (92)
T ss_pred EeccEEEEEEECCCCCCHHHCEEEEECCEEEEEecC
Confidence 468999999999999999999999999999999998
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.09 E-value=1.1e-10 Score=82.10 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=37.2
Q ss_pred CCCceEEEEeCCCCCCcccccccccCceEEEEeecC-----CcCceeee
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKK-----VTRSIQLR 77 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~-----k~rsI~i~ 77 (82)
..|.|+|+|+||..||.+ +|+|+||||+|.+||. ++|.|+|.
T Consensus 89 ~~g~F~R~f~LP~~vd~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 89 VNQPFSLSFTLAENMEVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred eCcEEEEEEECCCCcccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 679999999999999998 7999999999999995 45677764
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.08 E-value=1.4e-10 Score=80.64 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=36.3
Q ss_pred CCCCceEEEEeCCCCCCcccccccccCceEEEEeecC-----CcCceee
Q 045199 33 CPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKK-----VTRSIQL 76 (82)
Q Consensus 33 CPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~-----k~rsI~i 76 (82)
-..|+|+|+|+||..||.+ +|+|+||||+|.+||. ++|.|+|
T Consensus 90 r~~g~F~R~~~LP~~Vd~~--~A~~~dGVL~I~lPK~~~~~~~~r~I~I 136 (137)
T PRK10743 90 IAERNFERKFQLAENIHVR--GANLVNGLLYIDLERVIPEAKKPRRIEI 136 (137)
T ss_pred EECCEEEEEEECCCCcccC--cCEEeCCEEEEEEeCCCccccCCeEEee
Confidence 4689999999999999999 5999999999999995 3455665
No 4
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.06 E-value=2.4e-10 Score=71.75 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=31.9
Q ss_pred CCCCceEEEEeCCCCCCcccccccccCceEEEEeecCC
Q 045199 33 CPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKV 70 (82)
Q Consensus 33 CPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k 70 (82)
...|.|+++|.||..||++.++|+|.||+|.|.+||..
T Consensus 52 ~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~ 89 (102)
T PF00011_consen 52 RRYGSFERSIRLPEDVDPDKIKASYENGVLTITIPKKE 89 (102)
T ss_dssp S-SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSS
T ss_pred cccceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccc
Confidence 47899999999999999999999999999999999943
No 5
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.05 E-value=1.3e-10 Score=74.60 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=33.1
Q ss_pred CCCCceEEEEeCCCCCCcccccccc-cCceEEEEeec
Q 045199 33 CPPGDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVKK 68 (82)
Q Consensus 33 CPpG~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVpK 68 (82)
.-.++|+|+|+||..||+++++|+| .||+|+|.+||
T Consensus 47 ~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 47 FVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred EEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 4456899999999999999999999 59999999997
No 6
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.04 E-value=1.4e-10 Score=74.22 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=31.9
Q ss_pred CceEEEEeCCCCCCcccccccc-cCceEEEEeecC
Q 045199 36 GDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVKKK 69 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVpK~ 69 (82)
++|+|+|+||..||++.++|+| .||||.|.+||.
T Consensus 50 ~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 50 REFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred EEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 4799999999999999999999 599999999983
No 7
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.03 E-value=1.7e-10 Score=73.94 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=31.1
Q ss_pred ceEEEEeCCCCCCcccccccc-cCceEEEEeec
Q 045199 37 DFSITFQLPGCLDDQQFNGDF-TDGIFIGVVKK 68 (82)
Q Consensus 37 ~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVpK 68 (82)
+|+|+|+||..||+++++|+| +||||+|.+||
T Consensus 54 ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 54 EFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK 86 (86)
T ss_pred EEEEEEECCCCCChHHeEEEeCCCCEEEEEecC
Confidence 599999999999999999999 89999999998
No 8
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=98.98 E-value=3.1e-10 Score=72.88 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCCceEEEEeCCCCCCcccccccc-cCceEEEEeec
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVKK 68 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVpK 68 (82)
-.|+|+|+|+||..||++.++|+| +||||.|.+|.
T Consensus 52 ~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P~ 87 (87)
T cd06481 52 EYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAPR 87 (87)
T ss_pred EeeEEEEEEECCCCcChHHeEEEeCCCceEEEEcCC
Confidence 369999999999999999999999 99999999984
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=98.97 E-value=4e-10 Score=71.52 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=30.9
Q ss_pred ceEEEEeCCCCCCcccccccc-cCceEEEEeec
Q 045199 37 DFSITFQLPGCLDDQQFNGDF-TDGIFIGVVKK 68 (82)
Q Consensus 37 ~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVpK 68 (82)
+|+|+|+||..||+++++|+| +||+|.|.+||
T Consensus 51 ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 51 EFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred EEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 599999999999999999999 79999999998
No 10
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=98.97 E-value=4e-10 Score=70.74 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=32.7
Q ss_pred CCCceEEEEeCCCCCCcccccccccCceEEEEeec
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKK 68 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK 68 (82)
..|.|.|+|.|| +||++.++|+|+||+|+|.+||
T Consensus 60 ~~g~f~r~~~lp-~v~~~~i~A~~~dGvL~I~lPK 93 (93)
T cd06471 60 YYGSFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93 (93)
T ss_pred eccEEEEEEECC-CCCHHHCEEEEECCEEEEEEcC
Confidence 679999999999 7999999999999999999998
No 11
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.97 E-value=4e-10 Score=67.19 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=37.2
Q ss_pred cccCCCCCceEEEEeCCCCCCcccccccccCceEEEEeec
Q 045199 29 TRNLCPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKK 68 (82)
Q Consensus 29 ~q~LCPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK 68 (82)
..+-+..|.|.|+|+||..||++.++|+|.||+|+|.+||
T Consensus 49 ~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~pk 88 (88)
T cd06464 49 LRRERSYGSFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88 (88)
T ss_pred EEEEEeCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEEcC
Confidence 3466789999999999999999999999999999999997
No 12
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=98.94 E-value=5.8e-10 Score=69.55 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=32.3
Q ss_pred CCceEEEEeCCCCCCcccccccccC-ceEEEEeec
Q 045199 35 PGDFSITFQLPGCLDDQQFNGDFTD-GIFIGVVKK 68 (82)
Q Consensus 35 pG~FsrSF~lPgpVD~~~~sa~F~D-GILe~vVpK 68 (82)
.|+|+|+|+||..||++.++|+|.+ |||+|.+||
T Consensus 49 ~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 49 SREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred EEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 4899999999999999999999976 999999998
No 13
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-09 Score=74.76 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=35.2
Q ss_pred CCCceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
..|.|.|+|.||..||++.++|+|+||+|+|.+||..+
T Consensus 98 ~~~~f~r~~~Lp~~v~~~~~~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 98 AYGEFERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred EeeeEEEEEECcccccccceeeEeeCcEEEEEEecccc
Confidence 36999999999999999999999999999999999544
No 14
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=98.93 E-value=6.9e-10 Score=71.41 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=33.0
Q ss_pred CCCceEEEEeCCCCCCcccccccc-cCceEEEEeec
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVKK 68 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVpK 68 (82)
..|+|+|+|+||.+||++.++|+| +||+|++.+++
T Consensus 46 ~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 46 VMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred EEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 579999999999999999999998 99999999875
No 15
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=98.85 E-value=1.7e-09 Score=69.28 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=30.5
Q ss_pred CceEEEEeCCCCCCccccccccc-CceEEEEee
Q 045199 36 GDFSITFQLPGCLDDQQFNGDFT-DGIFIGVVK 67 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F~-DGILe~vVp 67 (82)
++|+|+|+||..||+++++|+|. ||+|.+.+|
T Consensus 53 ~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP 85 (86)
T cd06475 53 RCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAP 85 (86)
T ss_pred EEEEEEEECCCCCCHHHcEEEECCCCeEEEEec
Confidence 48999999999999999999995 999999987
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.72 E-value=1e-08 Score=66.30 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=29.9
Q ss_pred CceEEEEeCCCCCCcccccccc-cCceEEEEee
Q 045199 36 GDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVK 67 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVp 67 (82)
++|+|+|+||..||++.++|+| +||+|+|..+
T Consensus 50 r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 50 RSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 3999999999999999999998 8999999865
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.71 E-value=7.9e-09 Score=67.50 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=31.4
Q ss_pred CCCceEEEEeCCCCCCcccccccc-cCceEEEEee
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVK 67 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVp 67 (82)
.+|+|+|+|.||..||.++++|+| +||+|++--|
T Consensus 52 ~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~~ 86 (87)
T cd06482 52 SYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETP 86 (87)
T ss_pred EEEEEEEEEECCCCcChHHcEEEEcCCCEEEEeeC
Confidence 899999999999999999999999 7779998655
No 18
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=98.66 E-value=2.3e-08 Score=63.66 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCCceEEEEeCCCCCCcccccccccCceEEEEeec
Q 045199 33 CPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKK 68 (82)
Q Consensus 33 CPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK 68 (82)
-+.|.|+|+|.||.+||.. +|+|.||+|.|.+++
T Consensus 57 ~~~g~f~R~~~LP~~vd~~--~A~~~~GvL~I~l~~ 90 (90)
T cd06470 57 IAKRAFERSFNLADHVKVK--GAELENGLLTIDLER 90 (90)
T ss_pred EeceEEEEEEECCCCceEC--eeEEeCCEEEEEEEC
Confidence 4579999999999999985 999999999999985
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.57 E-value=4.7e-08 Score=64.65 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=30.7
Q ss_pred CceEEEEeCCCCCCcccccccc-cCceEEEEee
Q 045199 36 GDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVK 67 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVp 67 (82)
++|+|+|+||..||++.+++++ +||+|.|..|
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 8999999999999999999999 5999999887
No 20
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.54 E-value=7.2e-08 Score=54.35 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=35.5
Q ss_pred cCCCCCceEEEEeCCCCCCcccccccccCceEEEEeec
Q 045199 31 NLCPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKK 68 (82)
Q Consensus 31 ~LCPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK 68 (82)
+-++.++|.++|+||++||++..+++|.+|+|++.++|
T Consensus 43 ~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 43 RERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred ceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 45678999999999999999999999999999999997
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.3e-07 Score=68.36 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=41.3
Q ss_pred CCCCCceEEEEeCCCCCCcccccccc-cCceEEEEeecCC-----cCceeeeee
Q 045199 32 LCPPGDFSITFQLPGCLDDQQFNGDF-TDGIFIGVVKKKV-----TRSIQLRQI 79 (82)
Q Consensus 32 LCPpG~FsrSF~lPgpVD~~~~sa~F-~DGILe~vVpK~k-----~rsI~i~~~ 79 (82)
-+=-=+|+|.|.||..||+.++++++ .||||.|.+||.. .|+|.|.++
T Consensus 111 G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~~ 164 (173)
T KOG3591|consen 111 GYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQV 164 (173)
T ss_pred CeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEeec
Confidence 33344899999999999999999999 9999999999944 778888764
No 22
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=4.6e-07 Score=65.72 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=35.3
Q ss_pred CCCceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
..|.|+++|.||.+|+-++++|.+.||+|.|+|||..+
T Consensus 145 ~~g~F~r~~~lPenv~~d~ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 145 KLGKFKRRFELPENVDVDEIKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred cccceEeeecCCccccHHHHHHHhhCCeEEEEEecccc
Confidence 35799999999999999999999999999999999665
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.03 E-value=7.6e-06 Score=49.11 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=33.8
Q ss_pred CceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 36 GDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
.+|.++++||++||++..++++.+|.|++.++|+.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 469999999999999999999999999999999765
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.72 E-value=5e-05 Score=44.28 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=35.4
Q ss_pred CCCceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 34 PPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 34 PpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
+.++|.+++.|+++||++..++++.+|.|++.++|+.+
T Consensus 39 ~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 39 GGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 46889999999999999999999999999999999775
No 25
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=96.82 E-value=0.0018 Score=39.00 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=34.3
Q ss_pred CCceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 35 PGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 35 pG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
.+.|.+.+.|+++||++..+.++.+|.+++.+.|..+
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP 77 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC
Confidence 5589999999999999999999999999999999765
No 26
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=93.18 E-value=0.12 Score=38.61 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=34.4
Q ss_pred ccceEEEehhhhhhhhhcccCCCCCceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 12 TTEILLKFRDQIRNLLDTRNLCPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 12 tge~~v~~~sqvf~~M~~q~LCPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
+++.++.....+.+ ...||-+ +++..++.|++|||||++-|..+
T Consensus 127 ~~~L~i~~~~~~~k---------------rv~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 127 EGALTIRVGEKYLK---------------RVALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred CceEEEecCCceEe---------------eEecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 46666665555444 6788977 78999999999999999988655
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=92.99 E-value=0.17 Score=29.22 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=29.6
Q ss_pred CceEEEEeCCCCCCcccccccccCceEEEEeec
Q 045199 36 GDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKK 68 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK 68 (82)
-+|....+|.++|+++.-+.+..++-|++.+.|
T Consensus 47 ~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 47 KEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp CEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred ceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 489999999999999999999999999999887
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=92.83 E-value=0.15 Score=37.48 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=29.5
Q ss_pred ceEEEEeCCCCCCcccccccc--cCceEEEEee
Q 045199 37 DFSITFQLPGCLDDQQFNGDF--TDGIFIGVVK 67 (82)
Q Consensus 37 ~FsrSF~lPgpVD~~~~sa~F--~DGILe~vVp 67 (82)
.|.+...||-+||.+..+|.| +-++|.|++|
T Consensus 295 ~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 295 KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 799999999999999999999 7899999987
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=87.10 E-value=0.89 Score=29.24 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred eEEEEeCCCCCCcccccccccCceEEEEeecCC
Q 045199 38 FSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKV 70 (82)
Q Consensus 38 FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k 70 (82)
|.....|.++|+++.-+.++.++.+++.+.|+.
T Consensus 46 y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 46 YEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred EEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 888999999999999999998899999999976
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=86.78 E-value=1.1 Score=27.49 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=31.6
Q ss_pred ceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 37 DFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 37 ~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
.|...+.|.++|+|+..+-+..++-+|+.+.|+.+
T Consensus 43 ~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 43 DYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA 77 (84)
T ss_pred cEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC
Confidence 69999999999999998888888889999999753
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=82.17 E-value=2 Score=26.95 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=32.1
Q ss_pred C-ceEEEEeCCCCCCcccccccccCceEEEEeecCCc
Q 045199 36 G-DFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 36 G-~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
| .|...+.|-++|||+.-+-+....-+|+.+.|+.+
T Consensus 44 ~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 44 NKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 5 59999999999999998878899999999999764
No 32
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=80.83 E-value=2.3 Score=24.89 Aligned_cols=33 Identities=15% Similarity=0.431 Sum_probs=29.5
Q ss_pred CceEEEEeCCCCCCcccccccccCceEEEEeecC
Q 045199 36 GDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKK 69 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~ 69 (82)
..|.+.+.||| |+++.++=+..++.|.|.--+.
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~ 39 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEVEDGVLTISGERE 39 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEe
Confidence 57999999999 9999999999899999986664
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=80.22 E-value=2.1 Score=25.75 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=30.3
Q ss_pred CceEEEEeCCCCCCcccccccccC-ceEEEEeecCCc
Q 045199 36 GDFSITFQLPGCLDDQQFNGDFTD-GIFIGVVKKKVT 71 (82)
Q Consensus 36 G~FsrSF~lPgpVD~~~~sa~F~D-GILe~vVpK~k~ 71 (82)
+++-+.-.|.++||++.-+-+..+ ..+++.+.|+.+
T Consensus 41 ~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 41 GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 456666789999999988888888 999999999865
No 34
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=78.48 E-value=3 Score=25.89 Aligned_cols=34 Identities=21% Similarity=0.502 Sum_probs=29.7
Q ss_pred CCceEEEEeCCCCCCcccccccccCceEEEEeecC
Q 045199 35 PGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKK 69 (82)
Q Consensus 35 pG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~ 69 (82)
.+.|.+.+.||| |+.+.++-...++.|.|..-+.
T Consensus 9 ~~~~~i~~~lPG-v~~edi~v~~~~~~L~I~g~~~ 42 (93)
T cd06471 9 DDEYIVEADLPG-FKKEDIKLDYKDGYLTISAKRD 42 (93)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEc
Confidence 467899999999 9999999999999999877653
No 35
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=78.14 E-value=3 Score=25.68 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=29.9
Q ss_pred ceEEEEeCCCCCCcccccccccCceEEEEeecCC
Q 045199 37 DFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKV 70 (82)
Q Consensus 37 ~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k 70 (82)
.|.+.+.||| +.++.++-...++.|.|.-.+..
T Consensus 8 ~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 8 KFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eEEEEEECCC-CCHHHcEEEEECCEEEEEEEEee
Confidence 7999999999 99999999999999999887644
No 36
>PF06261 LktC: Actinobacillus actinomycetemcomitans leukotoxin activator LktC; InterPro: IPR009369 This family consists of several Actinobacillus actinomycetemcomitans leukotoxin activator (LktC) proteins. Actinobacillus actinomycetemcomitans is a Gram-negative bacterium that has been implicated in the etiology of several forms of periodontitis, especially localised juvenile periodontitis. LktC along with LktB and LktD are thought to be required for activation and localisation of the leukotoxin [].
Probab=70.04 E-value=1.6 Score=32.11 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=18.4
Q ss_pred cccccCceEEEEeecCCcCceeeee
Q 045199 54 NGDFTDGIFIGVVKKKVTRSIQLRQ 78 (82)
Q Consensus 54 sa~F~DGILe~vVpK~k~rsI~i~~ 78 (82)
.+.|.|||||+.|-|+.- |..+|+
T Consensus 60 q~tfndg~le~evakq~v-sltlrn 83 (150)
T PF06261_consen 60 QSTFNDGMLEDEVAKQEV-SLTLRN 83 (150)
T ss_pred hcccccccccchhhhhee-eeEecc
Confidence 467999999999999654 555554
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=66.30 E-value=9.6 Score=23.96 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=29.0
Q ss_pred CCceEEEEeCCCCCCcccccccccCceEEEEeec
Q 045199 35 PGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKK 68 (82)
Q Consensus 35 pG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK 68 (82)
.+.|.+...||| |+++.++-...++.|.|.--+
T Consensus 10 ~~~~~v~~~lPG-~~kedi~v~~~~~~L~I~g~~ 42 (90)
T cd06470 10 ENNYRITLAVAG-FSEDDLEIEVENNQLTVTGKK 42 (90)
T ss_pred CCeEEEEEECCC-CCHHHeEEEEECCEEEEEEEE
Confidence 368999999999 899999999999999988554
No 38
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=58.02 E-value=18 Score=22.29 Aligned_cols=33 Identities=12% Similarity=-0.013 Sum_probs=27.4
Q ss_pred EEEEeCCCCCCcccccccccCc-eEEEEeecCCc
Q 045199 39 SITFQLPGCLDDQQFNGDFTDG-IFIGVVKKKVT 71 (82)
Q Consensus 39 srSF~lPgpVD~~~~sa~F~DG-ILe~vVpK~k~ 71 (82)
-+.-+|.++||++.-+=...|| .|++.+.|+.+
T Consensus 44 ~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 44 LLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred EEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 3666899999999988887666 79999999764
No 39
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=54.52 E-value=13 Score=23.64 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=17.2
Q ss_pred eEEEEeCCCCCC-cccccccccCceEEEEe
Q 045199 38 FSITFQLPGCLD-DQQFNGDFTDGIFIGVV 66 (82)
Q Consensus 38 FsrSF~lPgpVD-~~~~sa~F~DGILe~vV 66 (82)
|+|.|+||+-.. .+.+.=+|.+|-+.-+.
T Consensus 43 ~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 43 YTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp EE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred EECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 357899996554 45678889666554433
No 40
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=49.91 E-value=27 Score=21.34 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=29.1
Q ss_pred ceEEEE-eCCCCCCcccccccccCceEEEEeecCCc
Q 045199 37 DFSITF-QLPGCLDDQQFNGDFTDGIFIGVVKKKVT 71 (82)
Q Consensus 37 ~FsrSF-~lPgpVD~~~~sa~F~DGILe~vVpK~k~ 71 (82)
+|.... +|-++|+++.-+-+..++=+++.+.|+++
T Consensus 50 ~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 50 NYRFTINRLLKKIDPEKSSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred EEEEEehHhhCccCccccEEEEeCCEEEEEEEeCCC
Confidence 355555 49999999999999988889999999875
No 41
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=44.62 E-value=26 Score=22.32 Aligned_cols=34 Identities=15% Similarity=-0.023 Sum_probs=27.6
Q ss_pred eEEEEeCCCCCCcccccccccCc-eEEEEeecCCc
Q 045199 38 FSITFQLPGCLDDQQFNGDFTDG-IFIGVVKKKVT 71 (82)
Q Consensus 38 FsrSF~lPgpVD~~~~sa~F~DG-ILe~vVpK~k~ 71 (82)
.-+.=+|.++||++.-+=...|| .|++.+-|.++
T Consensus 45 ~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~ 79 (87)
T cd06492 45 PIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINK 79 (87)
T ss_pred eEEeCcccCcccccccEEEEeCCCEEEEEEEECCC
Confidence 34666889999999888778786 89999999754
No 42
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=44.45 E-value=60 Score=24.65 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=34.6
Q ss_pred cccCCCCCceEEEEeCCCCCCccccccc-----------ccCceEEEEeec-CCcCceeee
Q 045199 29 TRNLCPPGDFSITFQLPGCLDDQQFNGD-----------FTDGIFIGVVKK-KVTRSIQLR 77 (82)
Q Consensus 29 ~q~LCPpG~FsrSF~lPgpVD~~~~sa~-----------F~DGILe~vVpK-~k~rsI~i~ 77 (82)
...--|+...+++++||.+++...+-+. ..+|.+.+...+ .....++|+
T Consensus 125 ~~~~~~i~~v~v~i~~P~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~l~~~~~~~v~ 185 (511)
T PF09972_consen 125 SGWDVPIENVTVTITLPKPVDNSKAWGHPGPYGGTVEIDDDDGTVTFTTDNLPPNEGVEVR 185 (511)
T ss_pred CCCCCccceEEEEEECCCCCcceEEEEeccCCCccceeeecCCEEEEEEeccCCCCeEEEE
Confidence 3456899999999999998888666554 346666666666 344455555
No 43
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=41.59 E-value=57 Score=20.52 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCCccccccccc--CceEEEEeecCCc
Q 045199 38 FSITFQLPGCLDDQQFNGDFT--DGIFIGVVKKKVT 71 (82)
Q Consensus 38 FsrSF~lPgpVD~~~~sa~F~--DGILe~vVpK~k~ 71 (82)
|...|.|=++||++. +-++. -|=+|+.+.|+.+
T Consensus 46 ~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 46 YLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred EEEeeeccccCCCCc-EEEEcccCceEEEEEEcCCC
Confidence 888889999999886 66664 7899999999654
No 44
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=39.97 E-value=15 Score=22.22 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=18.0
Q ss_pred EEEEeCCCCCCcccccccc---cCceEE
Q 045199 39 SITFQLPGCLDDQQFNGDF---TDGIFI 63 (82)
Q Consensus 39 srSF~lPgpVD~~~~sa~F---~DGILe 63 (82)
|.+|+.++|+|++.+.+-+ .++||.
T Consensus 3 s~~~~~~~p~~~~~l~~~l~~~~~~vlR 30 (94)
T PF07683_consen 3 SVTFEFDRPFDPERLEAWLQELPGDVLR 30 (94)
T ss_dssp EEEEEESS-B-HHHHHHHHHHTTTTEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 6899999999999988766 356654
No 45
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=39.03 E-value=44 Score=21.19 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=24.5
Q ss_pred cCCCCCceEEEE-eCCCCCCcccccccccCc
Q 045199 31 NLCPPGDFSITF-QLPGCLDDQQFNGDFTDG 60 (82)
Q Consensus 31 ~LCPpG~FsrSF-~lPgpVD~~~~sa~F~DG 60 (82)
+| |+|.=.+.| .||..+|++.+..+-.+|
T Consensus 18 ~l-~~G~~~i~~~~Lp~~~d~~Sl~V~~~g~ 47 (104)
T PF13600_consen 18 SL-PAGENEIIFEGLPPSLDPDSLRVSGEGG 47 (104)
T ss_pred Ee-CCCceEEEEeCCCcccCCCcEEEEecCC
Confidence 44 779999999 699999999999887664
No 46
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=38.31 E-value=35 Score=20.64 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=21.4
Q ss_pred CCCCceEEEEeCC--CCCCccccc-ccc--cCceEEEEeecC
Q 045199 33 CPPGDFSITFQLP--GCLDDQQFN-GDF--TDGIFIGVVKKK 69 (82)
Q Consensus 33 CPpG~FsrSF~lP--gpVD~~~~s-a~F--~DGILe~vVpK~ 69 (82)
.+||+| +++++| |.--.+.+| ++. .+|.|++.|.+.
T Consensus 30 ~~pGQ~-v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~ 70 (99)
T PF00970_consen 30 FKPGQF-VSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRY 70 (99)
T ss_dssp STTT-E-EEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEEC
T ss_pred cCcceE-EEEEEccCCcceecceeEeeecCCCCcEEEEEEec
Confidence 688997 445555 222234444 222 578999999885
No 47
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=34.88 E-value=18 Score=27.81 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCCccccccceEEEehhhhhhhhhcccCCCCCceEEEEeCCCCCCcccccccccCceEEE
Q 045199 5 DGDEDDETTEILLKFRDQIRNLLDTRNLCPPGDFSITFQLPGCLDDQQFNGDFTDGIFIG 64 (82)
Q Consensus 5 dg~~d~ttge~~v~~~sqvf~~M~~q~LCPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~ 64 (82)
|.+++..|+-.+++-+..|-+ -|.+ .+..|||||+.+
T Consensus 323 ~~~~~~~~~~~~~c~~~kv~r-~k~~----------------------wk~~lk~g~~~~ 359 (375)
T PF03153_consen 323 DDEDDFDTDNVVLCQYDKVTR-VKNK----------------------WKCTLKDGIMHI 359 (375)
T ss_dssp -----STTS-EEEEEEEEEEE-ETTE----------------------EEEEEEEEEEEE
T ss_pred ccccccCcCCEEEEEeecccc-ccce----------------------eEEEeeeeEEEE
Confidence 344444667788888888877 4433 455789999986
No 48
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=32.41 E-value=25 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.806 Sum_probs=14.4
Q ss_pred hhhhhhh--cccCCCCCceEEE
Q 045199 22 QIRNLLD--TRNLCPPGDFSIT 41 (82)
Q Consensus 22 qvf~~M~--~q~LCPpG~FsrS 41 (82)
.+|-... ++-+||+++|++.
T Consensus 56 ~lYyYlegss~~~CP~nE~avV 77 (146)
T PF04798_consen 56 TLYYYLEGSSSVFCPPNEFAVV 77 (146)
T ss_pred eEEEEEeccccccCCCCceEEE
Confidence 3444344 8899999999974
No 49
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=31.55 E-value=32 Score=21.62 Aligned_cols=26 Identities=42% Similarity=0.942 Sum_probs=9.9
Q ss_pred ccCCCCCceEE--EEeCCCCCCccccccc
Q 045199 30 RNLCPPGDFSI--TFQLPGCLDDQQFNGD 56 (82)
Q Consensus 30 q~LCPpG~Fsr--SF~lPgpVD~~~~sa~ 56 (82)
-...|+|.+.- +|+||..+ |..|.+.
T Consensus 87 ~~~l~~G~~~fpF~f~LP~~l-P~S~~~~ 114 (149)
T PF00339_consen 87 PNILPPGEYEFPFEFQLPSNL-PSSFEGS 114 (149)
T ss_dssp -----C-TTEEEEEE---TTS---SEEEE
T ss_pred eecccCCCEEEEEEEECCCCC-CceEecc
Confidence 46778998776 66777666 5555544
No 50
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=30.23 E-value=58 Score=21.19 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=24.4
Q ss_pred eCCCCCCcccccccccCc-eEEEEeecCCc
Q 045199 43 QLPGCLDDQQFNGDFTDG-IFIGVVKKKVT 71 (82)
Q Consensus 43 ~lPgpVD~~~~sa~F~DG-ILe~vVpK~k~ 71 (82)
+|.++|+++.-+=...|| +|++.+.|...
T Consensus 54 ~L~~~I~~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 54 KLFDSVVADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred cccCccCcccCEEEEECCcEEEEEEEeCCC
Confidence 689999999888888776 48999999754
No 51
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=29.99 E-value=89 Score=20.20 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=32.2
Q ss_pred CCCCCceEEEEeCCCCCCcccccccccCceEEEEeecC
Q 045199 32 LCPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKK 69 (82)
Q Consensus 32 LCPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~ 69 (82)
-|--..|.++-.||| ++++.++-++.||.|.|.--+.
T Consensus 4 ~~~~~~~~v~adlPG-~~kedI~V~v~~~~L~I~ger~ 40 (87)
T cd06482 4 SCDSSNVLASVDVCG-FEPDQVKVKVKDGKVQVSAERE 40 (87)
T ss_pred cccCCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEe
Confidence 366678999999997 5999999999999999988763
No 52
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.36 E-value=88 Score=24.12 Aligned_cols=34 Identities=9% Similarity=-0.010 Sum_probs=28.8
Q ss_pred ceEEEEeCCCCCCcccccccccCceEEEEeecCC
Q 045199 37 DFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKV 70 (82)
Q Consensus 37 ~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k 70 (82)
.|...++|=++|+|+..+-+..---+||++.|+.
T Consensus 202 ~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~~ 235 (356)
T PLN03088 202 AYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKAE 235 (356)
T ss_pred ceeecccccccccccccEEEEecceEEEEEecCC
Confidence 5888889999999999998886668899998864
No 53
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3.2.2.21 from EC. AlkA (3-methyladenine-DNA glycosylase II) is a base excision repair glycosylase from Escherichia coli. It removes a variety of alkylated bases from DNA, primarily by removing alkylation damage from duplex and single stranded DNA. AlkA flips a 1-azaribose abasic nucleotide out of DNA. This produces a 66 degrees bend in the DNA and a marked widening of the minor groove []. This groove is a large hydrophobic cleft, which is unusually rich in aromatic residues. AlkA recognises electron-deficient methylated bases through pi-donor/acceptor interactions involving the electron-rich aromatic cleft. AlkA is similar in fold and active site location to the bifunctional glycosylase/lyase endonuclease III. This suggests that the two may use similar mechanisms for base excision []. The structural analysis of the AlkA and AlkA-hypoxanthine structures indicate that free hypoxanthine binding in the active site may inhibit glycosylase activity [].; GO: 0003905 alkylbase DNA N-glycosylase activity; PDB: 1MPG_B 3CWS_D 3CW7_C 3CWA_B 3D4V_A 3CWT_C 3CWU_B 3OGD_A 3CVS_C 1PVS_A ....
Probab=24.88 E-value=1.2e+02 Score=20.47 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=10.7
Q ss_pred CCceEEEEeCCCC
Q 045199 35 PGDFSITFQLPGC 47 (82)
Q Consensus 35 pG~FsrSF~lPgp 47 (82)
.+.|.|+|.+++-
T Consensus 32 ~~~Y~Rt~~l~~~ 44 (116)
T PF06029_consen 32 DGSYRRTFRLGGG 44 (116)
T ss_dssp SSEEEEEEEETTE
T ss_pred CCeEEEEEEeCCe
Confidence 4579999999984
No 54
>PF14558 TRP_N: ML-like domain
Probab=24.72 E-value=90 Score=21.43 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=23.0
Q ss_pred hhcccCCCC--CceEEEEeCCC-C----CCcccccccc--cCceEEEEeecC
Q 045199 27 LDTRNLCPP--GDFSITFQLPG-C----LDDQQFNGDF--TDGIFIGVVKKK 69 (82)
Q Consensus 27 M~~q~LCPp--G~FsrSF~lPg-p----VD~~~~sa~F--~DGILe~vVpK~ 69 (82)
+..+.|||- |.|....+.+- + .....++=.| -||.+.+++--.
T Consensus 70 ~~~~~lCPl~~~~~~~~~~~~~~~~~~~~~ip~iay~~pdl~a~~~v~~~~~ 121 (141)
T PF14558_consen 70 SNVPGLCPLPPGFFAIASSQIIVPPSFTSQIPSIAYAFPDLDATVRVILGDT 121 (141)
T ss_pred CCCCccccccccccccccccccCCHHHhhcCCceeEEcCCceEEEEEEEccC
Confidence 557899995 55655555443 1 1112233334 567777666443
No 55
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=23.79 E-value=35 Score=19.29 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=7.5
Q ss_pred ccCCCCCceE
Q 045199 30 RNLCPPGDFS 39 (82)
Q Consensus 30 q~LCPpG~Fs 39 (82)
=..||.|.|+
T Consensus 11 C~~Cp~GtYq 20 (48)
T PF07699_consen 11 CQPCPKGTYQ 20 (48)
T ss_pred cCCCCCCccC
Confidence 3578888886
No 56
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=23.69 E-value=68 Score=20.30 Aligned_cols=20 Identities=40% Similarity=0.793 Sum_probs=15.7
Q ss_pred cccCceEEEEeecCCcCceee
Q 045199 56 DFTDGIFIGVVKKKVTRSIQL 76 (82)
Q Consensus 56 ~F~DGILe~vVpK~k~rsI~i 76 (82)
.|++| |++.|.|...+|+=+
T Consensus 11 efk~g-~~G~V~kv~eNSVIV 30 (57)
T PF09953_consen 11 EFKDG-FTGIVEKVYENSVIV 30 (57)
T ss_pred EEcCC-cEEEEEEEecCcEEE
Confidence 47889 799999988877643
No 57
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=23.67 E-value=64 Score=18.55 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=18.5
Q ss_pred hhcccCCCCCceEEEEeCCCCCC
Q 045199 27 LDTRNLCPPGDFSITFQLPGCLD 49 (82)
Q Consensus 27 M~~q~LCPpG~FsrSF~lPgpVD 49 (82)
|..-.-|||-+-|+.-.||.|-.
T Consensus 1 m~~ga~~pppeislna~fptppa 23 (32)
T PF07629_consen 1 MENGADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCCCCCcceeccccCCChh
Confidence 45566799999999999998743
No 58
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=23.60 E-value=2e+02 Score=20.75 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=43.3
Q ss_pred EEEehhhhhhhhh-cccCCCCCceEEEEeCCCCCCcccccccccCceEEEEeecCCcCceee
Q 045199 16 LLKFRDQIRNLLD-TRNLCPPGDFSITFQLPGCLDDQQFNGDFTDGIFIGVVKKKVTRSIQL 76 (82)
Q Consensus 16 ~v~~~sqvf~~M~-~q~LCPpG~FsrSF~lPgpVD~~~~sa~F~DGILe~vVpK~k~rsI~i 76 (82)
.+...-...+ |. .+-.-|+|.|++.-. +|..-...|.+-|.-|--++.|.|.+...+.|
T Consensus 45 ~~~~~~~~~~-~~~~~i~L~~G~Ytv~A~-~g~~~~~~~d~pyy~G~~~f~I~~g~~t~v~v 104 (235)
T PF14900_consen 45 TVVKYWKYSE-MPGESIELPVGSYTVKAS-YGDNVAAGFDKPYYEGSTTFTIEKGETTTVSV 104 (235)
T ss_pred cEEEecchhc-cccceEeecCCcEEEEEE-cCCCccccccCceeecceeEEEecCCcEEEEE
Confidence 3444444445 77 777899999999999 88555556676777888899999977666654
No 59
>PF03762 VOMI: Vitelline membrane outer layer protein I (VOMI) ; InterPro: IPR005515 VOMI binds tightly to ovomucin fibrils of the egg yolk membrane. The structure [] consists of three beta-sheets forming Greek key motifs, which are related by an internal pseudo three-fold symmetry. Furthermore, the structure of VOMI has strong similarity to the structure of the delta-endotoxin, as well as a carbohydrate-binding site in the top region of the common fold [].; GO: 0030704 vitelline membrane formation; PDB: 1VMO_B.
Probab=22.34 E-value=43 Score=24.63 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=11.8
Q ss_pred hhcccCCCCCceEEEEeCCCCCCccc
Q 045199 27 LDTRNLCPPGDFSITFQLPGCLDDQQ 52 (82)
Q Consensus 27 M~~q~LCPpG~FsrSF~lPgpVD~~~ 52 (82)
=+..+.||-|.|.++|+| +|++.+
T Consensus 76 W~~~~~CP~g~~l~gF~L--rve~~q 99 (176)
T PF03762_consen 76 WSGIQWCPNGGYLIGFQL--RVEPPQ 99 (176)
T ss_dssp E---EE-S-SS-EEEEEE--EE----
T ss_pred CCCccCCCCCCeEEEEEE--EecCCC
Confidence 345688999999999998 455544
No 60
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=21.79 E-value=1.5e+02 Score=21.34 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=23.7
Q ss_pred CCceEEEEeCCCCCCccccc-ccc-cCceEEEEeecC
Q 045199 35 PGDFSITFQLPGCLDDQQFN-GDF-TDGIFIGVVKKK 69 (82)
Q Consensus 35 pG~FsrSF~lPgpVD~~~~s-a~F-~DGILe~vVpK~ 69 (82)
||+| +...+|+.-.++.+| ++. .+|-|++.|.+.
T Consensus 34 pGQ~-v~l~~~~~~~~R~YSIas~p~~~~l~l~Vk~~ 69 (245)
T cd06200 34 AGDI-AEIGPRHPLPHREYSIASLPADGALELLVRQV 69 (245)
T ss_pred CCcE-EEecCCCCCCCcceEeccCCCCCEEEEEEEEe
Confidence 8988 444466544567788 666 588899988663
No 61
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=21.66 E-value=66 Score=18.77 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=15.8
Q ss_pred CCCCceEEEEeCCCCCCcc
Q 045199 33 CPPGDFSITFQLPGCLDDQ 51 (82)
Q Consensus 33 CPpG~FsrSF~lPgpVD~~ 51 (82)
=|+|.+.+.+..||..+..
T Consensus 32 l~~G~~~v~v~~~Gy~~~~ 50 (71)
T PF08308_consen 32 LPPGEHTVTVEKPGYEPYT 50 (71)
T ss_pred cCCccEEEEEEECCCeeEE
Confidence 4799999999999986654
No 62
>PF00020 TNFR_c6: TNFR/NGFR cysteine-rich region; InterPro: IPR001368 A number of proteins, some of which are known to be receptors for growth factors have been found to contain a cysteine-rich domain at the N-terminal region that can be subdivided into four (or in some cases, three) repeats containing six conserved cysteines all of which are involved in intrachain disulphide bonds []. CD27 (also called S152 or T14) mediates a co-stimulatory signal for T and B cell activation and is involved in murine T cell development. Tyrosine-phosphorylation of ZAP-70 following CD27 ligation of T cells has been reported [], but not confirmed independently. CD30 was originally identified as Ki-1, an antigen expressed on Reed-Sternberg cells in Hodgkin's lymphomas and other non-Hodgkin's lymphomas, particularly diffuse large-cell lymphoma and immunoblastic lymphoma. CD30 has pleiotropic effects on CD30-positive lymphoma cell lines ranging from cell proliferation to cell death. It is thought to be involved in negative selection of T-cells in the thymus and is involved in TCR-mediated cell death. CD30 is a member of the TNFR family of molecules, activate NFkB through interaction with TRAF2 and TRAF5. CD40 (Bp50) plays a central role in the regulation of cell-mediated immunity as well as antibody mediated immunity. It is central to T cell dependent (TD)-responses and may influence survival of B cell lymphomas. CD95 (also called APO-1, fas antigen, Fas tumour necrosis factor receptor superfamily, member 6, TNFRSF6 or apoptosis antigen 1, APT1) is expressed, typically at high levels, on activated T and B cells. It is involved in the mediation of apoptosis-inducing signals. Other proteins known to belong to this family [, , , ] are, tumour Necrosis Factor type I and type II receptors (TNFR), Rabbit fibroma virus soluble TNF receptor (protein T2), lymphotoxin alpha/beta receptor, low-affinity nerve growth factor receptor (LA-NGFR) (p75), T-cell antigen OX40, Wsl-1, a receptor (for a yet undefined ligand) that mediates apoptosis and Vaccinia virus protein A53 (SalF19R). CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0005488 binding; PDB: 3TJE_F 3QD6_S 3ALQ_U 3IJ2_Y 3BUK_D 1SG1_X 1NCF_B 1EXT_A 1FT4_B 1TNR_R ....
Probab=21.53 E-value=40 Score=18.21 Aligned_cols=9 Identities=56% Similarity=1.416 Sum_probs=6.2
Q ss_pred CCCCceEEE
Q 045199 33 CPPGDFSIT 41 (82)
Q Consensus 33 CPpG~FsrS 41 (82)
||+|.|+-.
T Consensus 1 C~~g~y~~~ 9 (39)
T PF00020_consen 1 CPPGTYSDS 9 (39)
T ss_dssp ECTTEEEES
T ss_pred CccCcccCC
Confidence 677777654
No 63
>TIGR01633 phi3626_gp14_N putative phage tail component, N-terminal domain. This model represents the best-conserved region of about 125 amino acids, toward the N-terminus, of a family of proteins from temperate phage of a number of Gram-positive bacteria. These phage proteins range in length from 230 to 525 amino acids.
Probab=20.79 E-value=73 Score=20.10 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=11.7
Q ss_pred CceEEEEeCCCCC
Q 045199 36 GDFSITFQLPGCL 48 (82)
Q Consensus 36 G~FsrSF~lPgpV 48 (82)
|.|+++|..|.|.
T Consensus 110 ~~~titF~c~dP~ 122 (124)
T TIGR01633 110 GKGTLNFICPDPY 122 (124)
T ss_pred cEEEEEEEecCCc
Confidence 8999999999875
No 64
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=20.21 E-value=1.1e+02 Score=18.22 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=25.4
Q ss_pred ceEEEehhhhhhhhhcccCCCCCceEEEEeCCCCCCcc
Q 045199 14 EILLKFRDQIRNLLDTRNLCPPGDFSITFQLPGCLDDQ 51 (82)
Q Consensus 14 e~~v~~~sqvf~~M~~q~LCPpG~FsrSF~lPgpVD~~ 51 (82)
..++...+--|. ++ .|+|.+.+.|+.+|....+
T Consensus 27 ~~~~Td~~G~F~-i~----~~~g~~~l~is~~Gy~~~~ 59 (88)
T PF13715_consen 27 KGTVTDENGRFS-IK----LPEGDYTLKISYIGYETKT 59 (88)
T ss_pred ceEEECCCeEEE-EE----EcCCCeEEEEEEeCEEEEE
Confidence 345566677788 55 5689999999999988766
Done!