BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045201
         (66 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QO7|A Chain A, Structure Of Aspergillus Niger Epoxide Hydrolase
 pdb|1QO7|B Chain B, Structure Of Aspergillus Niger Epoxide Hydrolase
 pdb|3G0I|A Chain A, Complex Of Aspergillus Niger Epoxide Hydrolase With
           Valpromide (2-Propylpentanamide)
 pdb|3G0I|B Chain B, Complex Of Aspergillus Niger Epoxide Hydrolase With
           Valpromide (2-Propylpentanamide)
          Length = 394

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 41  DGPLVTEKILFAVKRYWVTEN 61
           D PL +E IL  V  YW+TE+
Sbjct: 284 DKPLPSETILEMVSLYWLTES 304


>pdb|3G02|A Chain A, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
           From Aspergillus Niger Generated By Directed Evolution
 pdb|3G02|B Chain B, Structure Of Enantioselective Mutant Of Epoxide Hydrolase
           From Aspergillus Niger Generated By Directed Evolution
          Length = 408

 Score = 26.2 bits (56), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 41  DGPLVTEKILFAVKRYWVTEN 61
           D PL +E IL  V  YW+TE+
Sbjct: 287 DKPLPSETILEMVSLYWLTES 307


>pdb|3MUN|A Chain A, Appep_pepclose Closed State
 pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
          Length = 693

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 6   RPEGAVIIRDQADVLVKVRKIVGGMRWNTKIIDHEDGPLVT 46
           R  GA +  DQ  +L+       G R   K +  E+ PL+T
Sbjct: 235 RYVGATVTEDQRFLLISAANSTSGNRLYVKDLSQENAPLLT 275


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,956,116
Number of Sequences: 62578
Number of extensions: 61473
Number of successful extensions: 106
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)