BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045202
(887 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 85/218 (38%), Gaps = 39/218 (17%)
Query: 449 CSKLKRLPEISS--GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTXXXXXXXXXX 506
+ L LP+ +ET+ L LP+SI L++L L +
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSI--------------- 157
Query: 507 XXXXXXXXXDGCSNLQRLPEELGNLQA---------LDSLHAVGTAITEVPPSIVRLKRV 557
C L LPE L + A L SL T I +P SI L+ +
Sbjct: 158 ---------RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 558 RGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNG-NNF 615
+ + + RN LS + ++ L L +L L C + P G + ++ L L +N
Sbjct: 209 KSLKI-RNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 616 ERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGC 653
+P I +L+ L+ L +R C L LP L L C
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 68/179 (37%), Gaps = 36/179 (20%)
Query: 409 PSLTQHLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEI-----SSG- 461
P Q L L L+ R L++LPA I L L+EL++ C +L LPE +SG
Sbjct: 120 PDTXQQFAGLETLTLA-RNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 462 -----NIETMRLDGTAPEELPSSIECLS-----------------------KLLHLDLVD 493
N++++RL+ T LP+SI L KL LDL
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 494 CKTXXXXXXXXXXXXXXXXXXXDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIV 552
C CSNL LP ++ L L+ L G PS++
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 579 LQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCER 638
L +L +++ + ELP++ + + L L N +P SI L+ L+ L IR C
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162
Query: 639 LQFLPK 644
L LP+
Sbjct: 163 LTELPE 168
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 12/122 (9%)
Query: 343 GFTEVRYLHWHRYPLKSLPSNI-HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQI----IT 397
G ++ L ++SLP++I + + L LK+ +S + + ++ H KL ++ T
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 398 AAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-LGLLKELNLSGCSKLKRLP 456
A N+ P + L L L NL +LP IH L L++L+L GC L RLP
Sbjct: 241 ALRNY------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 457 EI 458
+
Sbjct: 295 SL 296
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 553 RLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGL---LSSVRELH 609
RL ++R +YL N+ +LP + L+NL L + D + LP +G+ L ++ EL
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKE-LKNLETLWVTDNKLQALP--IGVFDQLVNLAELR 115
Query: 610 LNGNNFERIPESIIQ-LSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPN 668
L+ N + +P + L+ L L + Y E LQ LPK + L L + +P
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVP- 173
Query: 669 SSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEAREKISYPW 720
E F L KLD N L + +GA ++ L +L+E PW
Sbjct: 174 --EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE------NPW 217
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 521 LQRLPEEL-GNLQALDSLHAVGTAITEVPPSIV-RLKRVRGIYLGRNRGLSLPITFSVDG 578
LQ LP + L+ L++L + +P + +L + + L RN+ SLP D
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-FDS 131
Query: 579 LQNLLDLSLNDCCIMELPESL-GLLSSVRELHLNGNNFERIPESII-QLSNLKSL 631
L L LSL + LP+ + L+S++EL L N +R+PE +L+ LK+L
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 549 PSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVREL 608
PS++RL LG + L + +GL NL L+L C I ++P +L L + EL
Sbjct: 171 PSLMRLD------LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL 223
Query: 609 HLNGNNFERI-PESIIQLSNLKSLFI 633
++GN+F I P S LS+LK L++
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWV 249
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 521 LQRLPEEL-GNLQALDSLHAVGTAITEVPPSIV-RLKRVRGIYLGRNRGLSLPITFSVDG 578
LQ LP + L L L V + +P + +L + +YL N+ SLP D
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGV-FDK 155
Query: 579 LQNLLDLSLNDCCIMELPESL-GLLSSVRELHLNGNNFERIPESI 622
L NL L L++ + LPE + L+ +++L LN N + +P+ +
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 531 LQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDC 590
L ++D + A + I V I L VR + LG N+ L ++ L NL L L
Sbjct: 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK---LHDISALKELTNLTYLILTGN 95
Query: 591 CIMELPESL-GLLSSVRELHLNGNNFERIPESII-QLSNLKSLFIRYCERLQFLPK 644
+ LP + L++++EL L N + +P+ + +L+NL L++ Y +LQ LPK
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL-YHNQLQSLPK 150
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 531 LQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLND 589
L L L I +P + R+ +R + LG + L + +GL NL L+L
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGM 165
Query: 590 CCIMELPESLGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLFIRYCE 637
C + ++P +L L + EL L+GN + I P S L++L+ L++ + +
Sbjct: 166 CNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
>pdb|1T70|A Chain A, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|B Chain B, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|C Chain C, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|D Chain D, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|E Chain E, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|F Chain F, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|G Chain G, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
pdb|1T70|H Chain H, Crystal Structure Of A Novel Phosphatase From Deinococcus
Radiodurans
Length = 255
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 302 WHHKEIYKILSENRTPNLRILKF 324
WHHK+IY +LSE+ P +R L +
Sbjct: 68 WHHKDIYPMLSEDTYPIVRPLNY 90
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 534 LDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIM 593
L L+ G ++TE+P I L +R + L NR SLP + L D +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA--ELGSCFQLKYFYFFDNMVT 306
Query: 594 ELPESLGLLSSVRELHLNGNNFER 617
LP G L +++ L + GN E+
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 577 DGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYC 636
D L + LDLS + I + ++ + L+LNGN+ +P I LSNL+ L + +
Sbjct: 223 DQLWHALDLS--NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH- 279
Query: 637 ERLQFLP 643
RL LP
Sbjct: 280 NRLTSLP 286
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 553 RLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNG 612
R+ +R + LG + L + +GL NL L+L C + ++P +L L + EL L+G
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSG 187
Query: 613 NNFERI-PESIIQLSNLKSLFIRYCE 637
N + I P S L++L+ L++ + +
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQ 213
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 305 KEIYKILSENRTPNLRILKFYRSMNEENKCKVSYFQVPG 343
K+ Y S+ RTP+ YRS ++ + C VSY PG
Sbjct: 267 KDTYDSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPG 305
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 553 RLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNG 612
R+ +R + LG + LS + +GL NL L+L C + E+P +L L + EL L+G
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSG 216
Query: 613 NNFERI-PESIIQLSNLKSLFI 633
N+ I P S L +L+ L++
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWM 238
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 553 RLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESL-GLLSSVRELHLN 611
L + +YLG N+ SLP + L +L L+L+ + LP + L+ ++EL LN
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGV-FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108
Query: 612 GNNFERIPESII-QLSNLKSLFIRYCERLQFLP 643
N + +P+ + +L+ LK L + Y +L+ +P
Sbjct: 109 TNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVP 140
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 598 SLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFI 633
SL L ++RELHL+ N R+P + L L+ +++
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 519 SNLQRLPEELGNLQA----LDSLHAVGTAITEVPPSIVRL-------KRVRGIYLGRNRG 567
++L LP EL L A L SL A+ + + E+ S RL ++ + + NR
Sbjct: 194 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 253
Query: 568 LSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGN 613
SLP+ S LL LS+ + LPESL LSS ++L GN
Sbjct: 254 TSLPMLPS-----GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,017,663
Number of Sequences: 62578
Number of extensions: 941902
Number of successful extensions: 1889
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1853
Number of HSP's gapped (non-prelim): 58
length of query: 887
length of database: 14,973,337
effective HSP length: 107
effective length of query: 780
effective length of database: 8,277,491
effective search space: 6456442980
effective search space used: 6456442980
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)