Query 045202
Match_columns 887
No_of_seqs 749 out of 5552
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.1E-90 1.5E-94 862.1 69.1 820 1-875 166-1101(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2E-54 4.4E-59 513.5 21.8 556 22-643 161-787 (889)
3 PLN00113 leucine-rich repeat r 100.0 2.8E-34 6E-39 361.1 21.1 378 338-719 156-588 (968)
4 PLN00113 leucine-rich repeat r 100.0 6.7E-34 1.4E-38 357.7 21.7 367 317-696 188-589 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 5.5E-35 1.2E-39 315.1 5.3 248 24-280 1-283 (287)
6 KOG4194 Membrane glycoprotein 100.0 8E-33 1.7E-37 294.8 3.0 360 345-710 78-447 (873)
7 KOG4194 Membrane glycoprotein 100.0 4.7E-31 1E-35 281.4 4.3 360 346-714 53-428 (873)
8 KOG0444 Cytoskeletal regulator 100.0 7.3E-32 1.6E-36 288.5 -6.8 345 335-690 21-374 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 4.6E-29 1E-33 267.2 -4.9 313 318-643 56-379 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 2.3E-29 5.1E-34 257.7 -10.5 356 345-713 68-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 1.6E-28 3.5E-33 251.6 -10.0 344 335-691 103-541 (565)
12 PLN03210 Resistant to P. syrin 99.9 4.2E-23 9.2E-28 260.0 24.9 310 317-643 589-910 (1153)
13 KOG0618 Serine/threonine phosp 99.9 1.5E-25 3.2E-30 252.2 -1.8 378 318-711 46-509 (1081)
14 KOG0618 Serine/threonine phosp 99.8 9.2E-23 2E-27 229.9 -1.4 353 345-715 45-443 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 4E-19 8.7E-24 207.9 19.4 263 347-698 203-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.5E-19 9.7E-24 207.5 18.5 257 318-639 202-458 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4E-19 8.8E-24 209.4 14.1 250 346-667 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.8E-18 3.8E-23 204.1 15.7 248 416-691 178-428 (754)
19 KOG4237 Extracellular matrix p 99.7 1.3E-19 2.8E-24 186.6 -5.2 354 349-710 50-496 (498)
20 KOG0617 Ras suppressor protein 99.7 6.2E-19 1.3E-23 161.4 -4.8 152 461-637 33-184 (264)
21 KOG4237 Extracellular matrix p 99.7 2E-18 4.3E-23 177.9 -6.1 258 450-712 56-356 (498)
22 cd00116 LRR_RI Leucine-rich re 99.6 2.2E-16 4.7E-21 173.1 1.2 190 504-693 77-293 (319)
23 KOG0617 Ras suppressor protein 99.6 5.9E-17 1.3E-21 148.5 -3.5 187 504-698 29-219 (264)
24 cd00116 LRR_RI Leucine-rich re 99.5 1E-15 2.2E-20 167.8 1.6 88 480-567 132-233 (319)
25 KOG0532 Leucine-rich repeat (L 99.4 2.2E-14 4.7E-19 154.8 -3.8 182 450-637 60-245 (722)
26 KOG4658 Apoptotic ATPase [Sign 99.2 3.8E-11 8.3E-16 144.5 12.3 168 267-449 478-652 (889)
27 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 5.1E-16 137.3 7.5 193 443-640 97-291 (394)
28 COG4886 Leucine-rich repeat (L 99.1 9.1E-11 2E-15 132.5 7.9 201 420-626 97-300 (394)
29 PF01637 Arch_ATPase: Archaeal 99.1 5E-10 1.1E-14 116.6 11.4 196 21-221 1-233 (234)
30 KOG0532 Leucine-rich repeat (L 99.1 8.2E-12 1.8E-16 135.2 -2.3 193 438-637 74-271 (722)
31 KOG1259 Nischarin, modulator o 99.1 4.2E-11 9.2E-16 119.7 2.7 137 528-672 280-417 (490)
32 PRK00411 cdc6 cell division co 99.1 3.9E-09 8.4E-14 119.2 18.0 205 16-225 27-258 (394)
33 KOG1259 Nischarin, modulator o 99.1 4.3E-11 9.4E-16 119.7 1.8 191 438-637 213-410 (490)
34 KOG3207 Beta-tubulin folding c 99.0 2.8E-11 6.2E-16 127.4 -0.6 84 554-637 245-337 (505)
35 PF05729 NACHT: NACHT domain 99.0 1.9E-09 4.1E-14 105.7 12.3 143 43-191 1-163 (166)
36 KOG3207 Beta-tubulin folding c 99.0 8.8E-11 1.9E-15 123.8 1.3 59 579-637 245-312 (505)
37 TIGR02928 orc1/cdc6 family rep 99.0 2.3E-08 5.1E-13 111.6 19.4 200 15-218 11-242 (365)
38 PF14580 LRR_9: Leucine-rich r 99.0 5.1E-10 1.1E-14 108.5 4.6 101 533-637 20-124 (175)
39 PF14580 LRR_9: Leucine-rich r 98.9 5E-10 1.1E-14 108.6 4.1 103 531-636 41-150 (175)
40 COG2256 MGS1 ATPase related to 98.9 1.3E-08 2.8E-13 107.4 13.6 166 20-218 31-208 (436)
41 TIGR03015 pepcterm_ATPase puta 98.9 4.8E-08 1E-12 104.1 18.2 179 42-227 43-243 (269)
42 KOG1909 Ran GTPase-activating 98.9 2.5E-10 5.4E-15 117.4 0.4 185 506-690 90-310 (382)
43 PRK06893 DNA replication initi 98.9 4.2E-08 9.1E-13 101.2 15.3 181 14-226 11-207 (229)
44 KOG1909 Ran GTPase-activating 98.8 2.9E-10 6.4E-15 116.9 -2.8 132 506-637 155-309 (382)
45 PRK13342 recombination factor 98.7 2.1E-07 4.5E-12 105.1 16.1 179 15-223 8-197 (413)
46 TIGR00635 ruvB Holliday juncti 98.7 1.2E-07 2.7E-12 102.9 11.7 193 19-227 4-206 (305)
47 PRK00080 ruvB Holliday junctio 98.7 1.7E-07 3.6E-12 102.6 12.6 181 15-227 21-227 (328)
48 TIGR03420 DnaA_homol_Hda DnaA 98.6 6.9E-07 1.5E-11 92.5 16.0 178 17-227 13-206 (226)
49 PRK04841 transcriptional regul 98.6 4.8E-07 1E-11 113.9 17.1 193 14-226 9-229 (903)
50 KOG0531 Protein phosphatase 1, 98.6 9.6E-09 2.1E-13 116.3 -0.3 221 462-696 96-323 (414)
51 KOG0531 Protein phosphatase 1, 98.6 1.2E-08 2.6E-13 115.5 0.0 248 414-671 70-322 (414)
52 TIGR01242 26Sp45 26S proteasom 98.6 3.5E-07 7.5E-12 101.6 11.7 174 16-216 119-328 (364)
53 PLN03150 hypothetical protein; 98.6 1.4E-07 2.9E-12 111.9 8.6 105 486-591 420-526 (623)
54 PF05496 RuvB_N: Holliday junc 98.5 3.6E-07 7.8E-12 90.5 10.0 173 15-219 20-218 (233)
55 PLN03150 hypothetical protein; 98.5 1.7E-07 3.7E-12 111.1 8.8 109 534-643 420-532 (623)
56 PTZ00112 origin recognition co 98.5 1.7E-06 3.6E-11 100.4 14.7 208 15-226 751-986 (1164)
57 PF13401 AAA_22: AAA domain; P 98.5 5.7E-07 1.2E-11 84.2 8.9 113 42-160 4-125 (131)
58 KOG2028 ATPase related to the 98.5 5.4E-07 1.2E-11 93.2 9.1 150 15-190 134-293 (554)
59 cd00009 AAA The AAA+ (ATPases 98.5 1.4E-06 2.9E-11 83.2 11.6 123 22-162 1-131 (151)
60 PRK05564 DNA polymerase III su 98.4 6.5E-06 1.4E-10 89.5 17.4 178 18-222 3-190 (313)
61 PRK14961 DNA polymerase III su 98.4 4.5E-06 9.8E-11 92.4 16.4 182 15-220 12-218 (363)
62 PF13173 AAA_14: AAA domain 98.4 1.1E-06 2.5E-11 81.8 9.8 120 42-183 2-127 (128)
63 PRK07003 DNA polymerase III su 98.4 2.2E-06 4.7E-11 99.1 13.8 195 15-223 12-222 (830)
64 PRK14949 DNA polymerase III su 98.4 3.7E-06 8E-11 99.2 15.9 185 15-219 12-217 (944)
65 PRK12402 replication factor C 98.4 2.3E-06 5E-11 94.5 13.7 197 15-220 11-224 (337)
66 PRK14960 DNA polymerase III su 98.4 6E-06 1.3E-10 94.6 16.2 192 15-220 11-217 (702)
67 PRK04195 replication factor C 98.4 3.5E-06 7.6E-11 97.0 14.6 180 14-219 9-199 (482)
68 PLN03025 replication factor C 98.4 4E-06 8.7E-11 91.3 13.8 184 15-219 9-197 (319)
69 PRK13341 recombination factor 98.4 3.6E-06 7.8E-11 99.9 14.2 173 15-218 24-213 (725)
70 PF13191 AAA_16: AAA ATPase do 98.4 6E-07 1.3E-11 89.7 6.3 50 20-69 1-51 (185)
71 KOG1859 Leucine-rich repeat pr 98.3 2.2E-08 4.7E-13 111.8 -4.7 128 534-668 166-293 (1096)
72 PRK15386 type III secretion pr 98.3 2.5E-06 5.4E-11 92.8 11.0 113 484-614 72-188 (426)
73 PRK08727 hypothetical protein; 98.3 1.2E-05 2.6E-10 83.2 15.7 170 18-220 18-202 (233)
74 PRK14963 DNA polymerase III su 98.3 7.6E-06 1.7E-10 93.6 15.4 191 15-219 10-214 (504)
75 PRK14957 DNA polymerase III su 98.3 8.8E-06 1.9E-10 93.2 15.8 184 15-222 12-221 (546)
76 PRK12323 DNA polymerase III su 98.3 5.8E-06 1.2E-10 94.5 14.0 197 15-221 12-224 (700)
77 PRK08903 DnaA regulatory inact 98.3 1.2E-05 2.7E-10 83.1 15.5 178 15-228 14-205 (227)
78 PRK09087 hypothetical protein; 98.3 1.8E-05 3.8E-10 81.3 16.3 144 42-227 44-200 (226)
79 PRK14956 DNA polymerase III su 98.3 1E-05 2.3E-10 90.2 15.4 190 15-218 14-218 (484)
80 COG1474 CDC6 Cdc6-related prot 98.3 1.8E-05 3.9E-10 86.8 17.0 204 14-223 12-239 (366)
81 PRK03992 proteasome-activating 98.3 1.1E-05 2.5E-10 89.9 15.5 172 17-216 129-337 (389)
82 PF13855 LRR_8: Leucine rich r 98.3 5.3E-07 1.1E-11 71.7 3.5 58 462-519 2-60 (61)
83 PRK05642 DNA replication initi 98.3 2.5E-05 5.3E-10 80.9 16.8 154 43-227 46-213 (234)
84 PRK00440 rfc replication facto 98.3 1.3E-05 2.9E-10 87.7 15.8 184 15-219 13-200 (319)
85 PRK06645 DNA polymerase III su 98.3 1.2E-05 2.7E-10 91.4 15.7 185 15-219 17-226 (507)
86 PRK14962 DNA polymerase III su 98.3 1.1E-05 2.4E-10 91.4 14.8 185 15-223 10-220 (472)
87 PRK08084 DNA replication initi 98.3 1.8E-05 3.9E-10 82.0 15.2 174 20-226 24-213 (235)
88 KOG1859 Leucine-rich repeat pr 98.3 4.1E-08 9E-13 109.6 -5.1 199 387-592 81-291 (1096)
89 PRK05896 DNA polymerase III su 98.2 2E-05 4.4E-10 90.3 16.1 192 15-219 12-217 (605)
90 PTZ00202 tuzin; Provisional 98.2 6E-06 1.3E-10 89.1 10.9 164 14-190 257-433 (550)
91 PF13855 LRR_8: Leucine rich r 98.2 9.2E-07 2E-11 70.3 3.3 61 484-544 1-61 (61)
92 PF00308 Bac_DnaA: Bacterial d 98.2 2E-05 4.3E-10 80.6 13.9 182 18-221 7-207 (219)
93 TIGR02397 dnaX_nterm DNA polym 98.2 3.3E-05 7.2E-10 85.9 16.8 184 15-222 10-218 (355)
94 PRK15386 type III secretion pr 98.2 4.4E-06 9.5E-11 90.9 9.3 58 388-452 50-107 (426)
95 PRK08691 DNA polymerase III su 98.2 1.3E-05 2.9E-10 92.7 13.5 194 15-220 12-218 (709)
96 PRK07994 DNA polymerase III su 98.2 2.4E-05 5.1E-10 91.1 15.5 191 15-220 12-218 (647)
97 TIGR02903 spore_lon_C ATP-depe 98.2 1.8E-05 3.9E-10 93.2 14.5 206 15-225 150-398 (615)
98 PRK14964 DNA polymerase III su 98.2 3.6E-05 7.7E-10 87.0 16.1 181 15-219 9-214 (491)
99 PRK09112 DNA polymerase III su 98.2 4.7E-05 1E-09 83.2 16.2 197 14-223 18-241 (351)
100 PRK07471 DNA polymerase III su 98.2 4.9E-05 1.1E-09 83.5 16.3 201 14-223 14-239 (365)
101 PRK07940 DNA polymerase III su 98.2 5.5E-05 1.2E-09 83.8 16.7 178 18-222 4-213 (394)
102 PRK14951 DNA polymerase III su 98.1 5.1E-05 1.1E-09 88.2 16.9 193 15-220 12-223 (618)
103 PRK14958 DNA polymerase III su 98.1 3.2E-05 6.9E-10 88.8 15.0 182 15-220 12-218 (509)
104 PRK14955 DNA polymerase III su 98.1 2.9E-05 6.3E-10 87.1 13.7 199 15-220 12-226 (397)
105 KOG2982 Uncharacterized conser 98.1 2.8E-06 6.1E-11 85.9 4.7 202 461-662 71-287 (418)
106 PRK14087 dnaA chromosomal repl 98.1 5.6E-05 1.2E-09 85.7 15.8 188 21-226 118-323 (450)
107 TIGR00678 holB DNA polymerase 98.1 0.00011 2.4E-09 73.5 16.1 160 30-218 3-187 (188)
108 KOG4341 F-box protein containi 98.1 9.3E-08 2E-12 100.9 -6.7 254 385-638 159-438 (483)
109 PHA02544 44 clamp loader, smal 98.1 2.5E-05 5.4E-10 85.4 11.9 150 15-189 17-171 (316)
110 COG3899 Predicted ATPase [Gene 98.1 2E-05 4.4E-10 96.0 12.0 207 20-229 1-267 (849)
111 PRK09376 rho transcription ter 98.1 4E-06 8.6E-11 90.3 5.0 91 43-135 170-268 (416)
112 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3.1E-12 95.0 -5.7 170 369-542 187-373 (419)
113 PRK14969 DNA polymerase III su 98.0 5.7E-05 1.2E-09 87.4 14.6 181 15-219 12-217 (527)
114 PRK09111 DNA polymerase III su 98.0 6.5E-05 1.4E-09 87.5 15.1 197 15-222 20-233 (598)
115 KOG4579 Leucine-rich repeat (L 98.0 5.8E-07 1.3E-11 80.5 -1.5 111 534-650 29-143 (177)
116 KOG2982 Uncharacterized conser 98.0 9.1E-07 2E-11 89.3 -0.5 198 507-717 44-264 (418)
117 TIGR02881 spore_V_K stage V sp 98.0 2.9E-05 6.2E-10 82.1 10.7 154 19-192 6-192 (261)
118 KOG2120 SCF ubiquitin ligase, 98.0 1.9E-07 4.1E-12 94.1 -5.5 85 461-545 185-273 (419)
119 COG5238 RNA1 Ran GTPase-activa 98.0 1.5E-06 3.3E-11 86.6 0.5 134 504-637 88-253 (388)
120 PRK00149 dnaA chromosomal repl 98.0 0.00012 2.5E-09 83.9 15.9 178 21-220 125-320 (450)
121 PRK14952 DNA polymerase III su 98.0 0.00016 3.6E-09 83.7 17.0 191 15-217 9-214 (584)
122 PTZ00361 26 proteosome regulat 98.0 4.2E-05 9.2E-10 85.5 11.7 154 16-193 180-369 (438)
123 TIGR03689 pup_AAA proteasome A 98.0 3.2E-05 6.9E-10 87.7 10.9 158 16-191 179-378 (512)
124 PRK06620 hypothetical protein; 98.0 6.7E-05 1.5E-09 76.3 11.8 135 43-221 45-188 (214)
125 cd01128 rho_factor Transcripti 97.9 4.7E-06 1E-10 86.2 3.1 91 43-135 17-115 (249)
126 PRK14088 dnaA chromosomal repl 97.9 0.00021 4.5E-09 81.1 16.5 178 21-220 108-303 (440)
127 PRK14970 DNA polymerase III su 97.9 8.2E-05 1.8E-09 83.0 13.2 182 15-219 13-206 (367)
128 PRK14959 DNA polymerase III su 97.9 0.00012 2.6E-09 84.6 14.6 197 15-225 12-224 (624)
129 TIGR02880 cbbX_cfxQ probable R 97.9 0.00013 2.9E-09 77.7 14.0 152 20-191 23-208 (284)
130 TIGR00362 DnaA chromosomal rep 97.9 0.00026 5.5E-09 80.1 17.1 178 21-220 113-308 (405)
131 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00013 2.8E-09 89.1 15.5 150 16-189 184-361 (852)
132 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.5E-10 58.7 3.9 39 581-619 2-40 (44)
133 PRK06305 DNA polymerase III su 97.9 0.00035 7.6E-09 79.3 17.6 184 15-218 13-218 (451)
134 PRK07764 DNA polymerase III su 97.9 0.00018 4E-09 86.7 16.0 193 15-219 11-218 (824)
135 PRK08451 DNA polymerase III su 97.9 0.00034 7.3E-09 80.0 16.9 183 15-221 10-217 (535)
136 PTZ00454 26S protease regulato 97.9 0.00015 3.1E-09 80.7 13.6 177 15-217 141-352 (398)
137 PRK14950 DNA polymerase III su 97.9 0.00028 6E-09 83.2 16.7 196 15-222 12-221 (585)
138 TIGR02639 ClpA ATP-dependent C 97.9 9.9E-05 2.1E-09 89.5 13.1 149 17-191 180-358 (731)
139 PRK07133 DNA polymerase III su 97.9 0.00037 8.1E-09 81.8 17.0 191 15-219 14-216 (725)
140 PRK14954 DNA polymerase III su 97.9 0.00043 9.3E-09 80.9 17.4 197 15-218 12-224 (620)
141 PRK12422 chromosomal replicati 97.8 0.0005 1.1E-08 77.8 17.4 152 21-192 114-285 (445)
142 COG1222 RPT1 ATP-dependent 26S 97.8 0.00042 9.1E-09 72.8 15.0 172 16-217 148-358 (406)
143 PRK14953 DNA polymerase III su 97.8 0.00047 1E-08 78.8 16.9 196 15-223 12-221 (486)
144 TIGR00767 rho transcription te 97.8 3.1E-05 6.8E-10 84.0 6.5 91 43-135 169-267 (415)
145 PRK14948 DNA polymerase III su 97.8 0.00049 1.1E-08 80.9 16.6 197 15-222 12-222 (620)
146 CHL00176 ftsH cell division pr 97.8 0.00031 6.7E-09 82.6 14.8 175 17-216 181-388 (638)
147 PRK14086 dnaA chromosomal repl 97.8 0.00067 1.4E-08 78.2 16.6 156 43-220 315-486 (617)
148 PRK10865 protein disaggregatio 97.8 0.00023 5E-09 87.3 13.8 50 17-68 176-225 (857)
149 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.7E-10 56.5 3.6 41 603-644 1-41 (44)
150 CHL00181 cbbX CbbX; Provisiona 97.7 0.0011 2.5E-08 70.5 17.1 154 20-193 24-211 (287)
151 PRK06647 DNA polymerase III su 97.7 0.00091 2E-08 77.7 17.5 189 15-220 12-218 (563)
152 KOG0989 Replication factor C, 97.7 0.00023 5E-09 73.0 10.9 189 15-221 32-230 (346)
153 KOG4341 F-box protein containi 97.7 1E-06 2.2E-11 93.2 -6.2 248 390-637 138-412 (483)
154 KOG3665 ZYG-1-like serine/thre 97.7 1.1E-05 2.4E-10 95.4 1.6 127 507-634 147-283 (699)
155 KOG4579 Leucine-rich repeat (L 97.7 2.2E-06 4.8E-11 76.9 -3.3 92 529-622 50-142 (177)
156 PRK08116 hypothetical protein; 97.7 0.0002 4.2E-09 75.6 10.3 101 43-160 115-220 (268)
157 KOG2543 Origin recognition com 97.7 0.0011 2.4E-08 70.2 15.4 198 17-224 4-228 (438)
158 CHL00095 clpC Clp protease ATP 97.7 0.00031 6.7E-09 86.3 13.3 150 19-189 179-352 (821)
159 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00035 7.6E-09 86.0 13.8 151 17-190 171-348 (852)
160 PF00004 AAA: ATPase family as 97.7 0.00045 9.7E-09 64.4 11.4 25 45-69 1-25 (132)
161 PF14516 AAA_35: AAA-like doma 97.7 0.002 4.4E-08 70.3 18.0 204 15-228 7-245 (331)
162 COG2909 MalT ATP-dependent tra 97.7 0.00062 1.4E-08 79.2 14.2 192 15-223 15-234 (894)
163 PRK14971 DNA polymerase III su 97.6 0.0014 3E-08 77.2 17.4 179 16-219 14-219 (614)
164 PRK11034 clpA ATP-dependent Cl 97.6 0.00028 6.1E-09 84.5 11.8 152 19-191 186-362 (758)
165 PRK05707 DNA polymerase III su 97.6 0.002 4.2E-08 70.0 17.1 95 122-223 106-204 (328)
166 PRK05563 DNA polymerase III su 97.6 0.0013 2.8E-08 76.8 16.8 194 15-220 12-218 (559)
167 COG3903 Predicted ATPase [Gene 97.6 2.9E-05 6.4E-10 83.1 2.9 173 41-223 13-190 (414)
168 COG5238 RNA1 Ran GTPase-activa 97.6 2.3E-05 5E-10 78.5 1.9 161 479-639 87-285 (388)
169 TIGR01241 FtsH_fam ATP-depende 97.6 0.00089 1.9E-08 77.7 14.9 175 17-216 53-260 (495)
170 COG1373 Predicted ATPase (AAA+ 97.6 0.00058 1.3E-08 76.3 12.9 119 44-187 39-163 (398)
171 PRK14965 DNA polymerase III su 97.5 0.0012 2.5E-08 77.5 14.9 182 15-216 12-214 (576)
172 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.5E-10 90.9 1.8 127 508-637 122-261 (699)
173 KOG2227 Pre-initiation complex 97.5 0.0026 5.6E-08 69.2 15.2 180 6-191 139-338 (529)
174 PF05673 DUF815: Protein of un 97.5 0.00097 2.1E-08 67.5 11.4 56 14-70 22-80 (249)
175 KOG1644 U2-associated snRNP A' 97.5 0.00023 4.9E-09 68.7 6.2 79 485-565 43-123 (233)
176 COG2255 RuvB Holliday junction 97.5 0.00077 1.7E-08 68.6 10.2 177 15-223 22-224 (332)
177 TIGR00602 rad24 checkpoint pro 97.4 0.00057 1.2E-08 79.8 10.1 54 14-67 79-135 (637)
178 smart00382 AAA ATPases associa 97.3 0.00038 8.2E-09 65.5 6.4 34 43-76 3-36 (148)
179 PRK12377 putative replication 97.3 0.00083 1.8E-08 69.5 8.9 35 42-76 101-135 (248)
180 TIGR01243 CDC48 AAA family ATP 97.3 0.0033 7.2E-08 76.6 15.4 170 19-216 453-657 (733)
181 PRK07399 DNA polymerase III su 97.3 0.0048 1E-07 66.6 14.8 191 19-221 4-220 (314)
182 PF05621 TniB: Bacterial TniB 97.3 0.0042 9.2E-08 65.0 13.7 201 19-223 34-262 (302)
183 PRK08181 transposase; Validate 97.3 0.00076 1.6E-08 70.8 8.2 34 43-76 107-140 (269)
184 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0036 7.9E-08 71.3 14.3 174 19-217 228-430 (489)
185 PRK11331 5-methylcytosine-spec 97.3 0.00055 1.2E-08 75.7 7.4 105 19-135 175-284 (459)
186 PLN00020 ribulose bisphosphate 97.3 0.0042 9.1E-08 66.6 13.3 153 40-217 146-333 (413)
187 KOG1644 U2-associated snRNP A' 97.2 0.00054 1.2E-08 66.2 5.9 102 461-563 42-148 (233)
188 PRK09183 transposase/IS protei 97.2 0.00092 2E-08 70.2 8.3 34 43-76 103-136 (259)
189 COG0593 DnaA ATPase involved i 97.2 0.011 2.4E-07 65.0 16.8 151 20-193 89-259 (408)
190 PRK10536 hypothetical protein; 97.2 0.0012 2.7E-08 67.6 8.6 137 19-162 55-214 (262)
191 COG1223 Predicted ATPase (AAA+ 97.2 0.0034 7.4E-08 62.9 11.3 171 17-216 119-319 (368)
192 TIGR01243 CDC48 AAA family ATP 97.2 0.004 8.7E-08 75.9 14.6 175 17-218 176-383 (733)
193 PRK10865 protein disaggregatio 97.2 0.0034 7.4E-08 77.1 14.0 51 18-68 567-624 (857)
194 PRK06526 transposase; Provisio 97.2 0.00073 1.6E-08 70.5 6.9 35 42-76 98-132 (254)
195 PRK06921 hypothetical protein; 97.1 0.0011 2.4E-08 69.8 7.1 36 42-77 117-153 (266)
196 TIGR02640 gas_vesic_GvpN gas v 97.1 0.012 2.6E-07 62.1 15.0 38 29-70 12-49 (262)
197 PF04665 Pox_A32: Poxvirus A32 97.0 0.0036 7.9E-08 63.9 10.0 34 43-76 14-47 (241)
198 PRK08118 topology modulation p 97.0 0.00046 1E-08 67.3 3.4 33 44-76 3-38 (167)
199 COG3267 ExeA Type II secretory 97.0 0.03 6.4E-07 56.7 16.0 177 40-223 49-246 (269)
200 PRK07952 DNA replication prote 97.0 0.0032 6.9E-08 65.1 9.6 49 28-76 85-133 (244)
201 COG0466 Lon ATP-dependent Lon 97.0 0.0037 8E-08 71.7 10.6 157 19-192 323-509 (782)
202 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0078 1.7E-07 74.3 14.3 52 18-69 564-622 (852)
203 PF07693 KAP_NTPase: KAP famil 97.0 0.023 5E-07 62.3 16.5 44 26-69 3-47 (325)
204 TIGR02639 ClpA ATP-dependent C 96.9 0.012 2.7E-07 71.5 15.1 50 18-67 453-509 (731)
205 COG0470 HolB ATPase involved i 96.9 0.0065 1.4E-07 66.6 11.7 143 20-182 2-172 (325)
206 KOG0991 Replication factor C, 96.9 0.0017 3.8E-08 63.8 6.0 51 14-66 22-72 (333)
207 TIGR00763 lon ATP-dependent pr 96.9 0.0098 2.1E-07 72.8 13.7 53 19-71 320-376 (775)
208 KOG0731 AAA+-type ATPase conta 96.9 0.013 2.7E-07 68.8 13.6 180 16-219 308-521 (774)
209 PF01695 IstB_IS21: IstB-like 96.9 0.00071 1.5E-08 66.6 3.1 35 42-76 47-81 (178)
210 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.5E-08 71.3 4.5 50 19-68 51-104 (361)
211 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0032 6.8E-08 65.6 7.5 91 43-135 70-175 (274)
212 KOG0730 AAA+-type ATPase [Post 96.8 0.018 3.8E-07 65.6 13.6 151 20-193 435-617 (693)
213 KOG2228 Origin recognition com 96.8 0.0077 1.7E-07 62.9 9.9 183 7-191 12-219 (408)
214 PRK08058 DNA polymerase III su 96.8 0.023 5E-07 62.0 14.5 158 19-189 5-180 (329)
215 KOG0733 Nuclear AAA ATPase (VC 96.8 0.012 2.7E-07 65.9 12.1 184 18-223 189-407 (802)
216 PRK06835 DNA replication prote 96.8 0.0051 1.1E-07 66.6 9.1 34 43-76 184-217 (329)
217 KOG0735 AAA+-type ATPase [Post 96.8 0.02 4.2E-07 65.5 13.6 154 41-215 430-608 (952)
218 PRK10787 DNA-binding ATP-depen 96.8 0.0032 6.8E-08 76.3 8.1 157 19-191 322-506 (784)
219 COG2607 Predicted ATPase (AAA+ 96.7 0.016 3.4E-07 57.9 11.2 123 16-165 57-188 (287)
220 PRK08939 primosomal protein Dn 96.7 0.0053 1.1E-07 66.0 8.8 112 28-159 140-259 (306)
221 PRK08769 DNA polymerase III su 96.7 0.032 7E-07 60.1 14.4 94 122-223 112-209 (319)
222 COG0542 clpA ATP-binding subun 96.7 0.0094 2E-07 70.3 11.0 119 19-147 491-619 (786)
223 PRK10733 hflB ATP-dependent me 96.7 0.02 4.3E-07 68.4 14.0 152 19-192 152-336 (644)
224 PRK07261 topology modulation p 96.7 0.0049 1.1E-07 60.4 7.3 23 44-66 2-24 (171)
225 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0065 1.4E-07 74.5 10.0 51 18-68 565-622 (852)
226 COG2812 DnaX DNA polymerase II 96.6 0.0092 2E-07 67.6 10.1 184 15-216 12-214 (515)
227 cd01131 PilT Pilus retraction 96.6 0.0053 1.1E-07 61.8 7.6 110 43-164 2-112 (198)
228 PF02562 PhoH: PhoH-like prote 96.6 0.0072 1.6E-07 60.3 8.2 128 24-163 5-158 (205)
229 KOG0741 AAA+-type ATPase [Post 96.6 0.013 2.8E-07 64.6 10.6 148 40-212 536-704 (744)
230 PRK06871 DNA polymerase III su 96.6 0.061 1.3E-06 58.1 15.8 173 28-220 11-201 (325)
231 PF13207 AAA_17: AAA domain; P 96.6 0.0018 3.9E-08 59.5 3.7 23 44-66 1-23 (121)
232 COG0542 clpA ATP-binding subun 96.6 0.0036 7.8E-08 73.7 6.9 151 19-189 170-344 (786)
233 PHA00729 NTP-binding motif con 96.6 0.011 2.3E-07 59.9 9.2 27 41-67 16-42 (226)
234 cd00561 CobA_CobO_BtuR ATP:cor 96.6 0.003 6.4E-08 60.3 5.0 133 43-177 3-154 (159)
235 cd01120 RecA-like_NTPases RecA 96.6 0.012 2.6E-07 56.9 9.5 33 44-76 1-33 (165)
236 TIGR02902 spore_lonB ATP-depen 96.6 0.011 2.3E-07 69.0 10.5 49 17-67 63-111 (531)
237 KOG2739 Leucine-rich acidic nu 96.6 0.00096 2.1E-08 67.4 1.6 61 577-637 62-127 (260)
238 PRK07993 DNA polymerase III su 96.6 0.046 1E-06 59.5 14.7 177 27-220 10-202 (334)
239 PF14532 Sigma54_activ_2: Sigm 96.5 0.0024 5.3E-08 60.2 4.2 46 22-67 1-46 (138)
240 PRK05541 adenylylsulfate kinas 96.5 0.02 4.3E-07 56.5 10.9 35 42-76 7-41 (176)
241 COG1484 DnaC DNA replication p 96.5 0.0065 1.4E-07 63.5 7.7 36 41-76 104-139 (254)
242 KOG2739 Leucine-rich acidic nu 96.5 0.0014 3E-08 66.2 2.4 59 579-637 90-154 (260)
243 KOG0728 26S proteasome regulat 96.5 0.042 9.1E-07 54.8 12.5 148 20-193 147-333 (404)
244 PRK04296 thymidine kinase; Pro 96.5 0.0053 1.1E-07 61.3 6.4 112 43-163 3-118 (190)
245 CHL00095 clpC Clp protease ATP 96.5 0.012 2.6E-07 72.5 10.8 133 18-160 508-661 (821)
246 PRK06090 DNA polymerase III su 96.5 0.083 1.8E-06 56.9 15.7 91 123-223 108-202 (319)
247 PRK07667 uridine kinase; Provi 96.5 0.0055 1.2E-07 61.4 6.4 42 27-68 2-43 (193)
248 PF13177 DNA_pol3_delta2: DNA 96.4 0.017 3.7E-07 56.0 9.5 137 23-178 1-161 (162)
249 PRK06696 uridine kinase; Valid 96.4 0.005 1.1E-07 63.3 5.8 46 24-69 3-49 (223)
250 PRK12608 transcription termina 96.4 0.0073 1.6E-07 65.5 7.0 104 29-135 121-232 (380)
251 KOG0744 AAA+-type ATPase [Post 96.4 0.023 5.1E-07 59.0 10.2 25 42-66 177-201 (423)
252 PF13306 LRR_5: Leucine rich r 96.3 0.0034 7.4E-08 58.2 3.9 97 599-704 31-128 (129)
253 PF07728 AAA_5: AAA domain (dy 96.3 0.0025 5.4E-08 60.2 2.9 23 45-67 2-24 (139)
254 KOG0734 AAA+-type ATPase conta 96.3 0.03 6.5E-07 61.9 11.2 148 18-191 303-484 (752)
255 COG0464 SpoVK ATPases of the A 96.3 0.038 8.1E-07 64.4 13.0 152 19-193 242-425 (494)
256 KOG2123 Uncharacterized conser 96.3 0.00016 3.6E-09 72.8 -5.6 57 508-567 19-75 (388)
257 COG1618 Predicted nucleotide k 96.3 0.0044 9.6E-08 57.9 4.0 38 43-80 6-45 (179)
258 KOG0652 26S proteasome regulat 96.3 0.078 1.7E-06 53.3 12.8 169 15-209 167-374 (424)
259 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0091 2E-07 56.7 6.1 111 43-175 27-140 (144)
260 KOG1947 Leucine rich repeat pr 96.2 0.00065 1.4E-08 78.9 -2.2 39 483-521 268-308 (482)
261 PRK04132 replication factor C 96.2 0.071 1.5E-06 64.5 14.8 150 50-220 574-729 (846)
262 PRK11889 flhF flagellar biosyn 96.2 0.025 5.4E-07 61.6 9.8 36 41-76 240-275 (436)
263 PRK06964 DNA polymerase III su 96.2 0.097 2.1E-06 56.9 14.5 91 122-222 131-225 (342)
264 KOG0727 26S proteasome regulat 96.2 0.14 3.1E-06 51.3 14.1 147 19-191 155-339 (408)
265 PRK11034 clpA ATP-dependent Cl 96.2 0.02 4.3E-07 69.0 9.8 49 19-67 458-513 (758)
266 PRK09361 radB DNA repair and r 96.1 0.011 2.3E-07 61.1 6.4 48 30-77 11-58 (225)
267 PRK15455 PrkA family serine pr 96.1 0.0061 1.3E-07 69.1 4.8 50 19-68 76-129 (644)
268 COG4608 AppF ABC-type oligopep 96.1 0.017 3.8E-07 59.2 7.5 143 42-188 39-199 (268)
269 cd01394 radB RadB. The archaea 96.0 0.018 3.9E-07 59.1 7.7 48 29-76 6-53 (218)
270 COG0465 HflB ATP-dependent Zn 96.0 0.038 8.3E-07 63.6 10.6 174 16-218 147-357 (596)
271 cd03214 ABC_Iron-Siderophores_ 96.0 0.021 4.5E-07 56.6 7.7 130 43-175 26-171 (180)
272 PF13306 LRR_5: Leucine rich r 96.0 0.02 4.4E-07 53.0 7.1 73 576-656 54-128 (129)
273 KOG0733 Nuclear AAA ATPase (VC 96.0 0.06 1.3E-06 60.7 11.5 150 42-216 545-718 (802)
274 PF01583 APS_kinase: Adenylyls 95.9 0.0098 2.1E-07 56.5 4.8 34 43-76 3-36 (156)
275 KOG0651 26S proteasome regulat 95.9 0.042 9E-07 56.9 9.3 127 41-190 165-315 (388)
276 TIGR01817 nifA Nif-specific re 95.9 0.034 7.4E-07 65.3 10.0 50 17-66 194-243 (534)
277 PRK14974 cell division protein 95.8 0.035 7.7E-07 60.2 9.0 29 41-69 139-167 (336)
278 TIGR02974 phageshock_pspF psp 95.8 0.026 5.7E-07 61.5 8.1 45 21-65 1-45 (329)
279 PF13238 AAA_18: AAA domain; P 95.8 0.0078 1.7E-07 55.7 3.4 22 45-66 1-22 (129)
280 PF13604 AAA_30: AAA domain; P 95.8 0.035 7.6E-07 55.7 8.3 105 43-164 19-134 (196)
281 PRK08699 DNA polymerase III su 95.8 0.099 2.1E-06 56.8 12.2 86 123-219 114-203 (325)
282 PRK15429 formate hydrogenlyase 95.7 0.024 5.3E-07 68.6 8.3 50 17-66 374-423 (686)
283 PF13671 AAA_33: AAA domain; P 95.7 0.009 2E-07 56.6 3.7 24 44-67 1-24 (143)
284 PF00485 PRK: Phosphoribulokin 95.7 0.009 1.9E-07 60.0 3.8 26 44-69 1-26 (194)
285 TIGR00064 ftsY signal recognit 95.7 0.017 3.6E-07 61.1 5.9 36 41-76 71-106 (272)
286 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.084 1.8E-06 52.3 10.8 23 44-66 1-23 (183)
287 cd02027 APSK Adenosine 5'-phos 95.7 0.038 8.1E-07 52.8 7.9 24 44-67 1-24 (149)
288 TIGR01650 PD_CobS cobaltochela 95.7 0.18 3.9E-06 54.1 13.5 44 26-73 52-95 (327)
289 KOG0739 AAA+-type ATPase [Post 95.7 0.19 4.1E-06 51.8 12.7 52 19-70 133-194 (439)
290 cd01121 Sms Sms (bacterial rad 95.7 0.034 7.3E-07 61.4 8.3 49 28-76 68-116 (372)
291 PF10443 RNA12: RNA12 protein; 95.7 0.5 1.1E-05 52.1 16.9 100 123-226 148-282 (431)
292 TIGR02237 recomb_radB DNA repa 95.7 0.021 4.6E-07 58.1 6.3 38 40-77 10-47 (209)
293 COG0572 Udk Uridine kinase [Nu 95.6 0.014 3E-07 58.3 4.6 30 40-69 6-35 (218)
294 cd01393 recA_like RecA is a b 95.6 0.047 1E-06 56.2 8.9 48 30-77 7-60 (226)
295 PF00448 SRP54: SRP54-type pro 95.6 0.012 2.7E-07 58.8 4.3 34 43-76 2-35 (196)
296 cd03222 ABC_RNaseL_inhibitor T 95.6 0.021 4.6E-07 56.0 5.8 114 43-176 26-146 (177)
297 PRK11608 pspF phage shock prot 95.6 0.02 4.2E-07 62.5 6.0 48 18-65 5-52 (326)
298 KOG2123 Uncharacterized conser 95.6 0.0015 3.2E-08 66.1 -2.5 79 556-638 20-100 (388)
299 KOG0726 26S proteasome regulat 95.6 0.031 6.6E-07 57.1 6.7 61 10-70 176-247 (440)
300 TIGR00708 cobA cob(I)alamin ad 95.5 0.038 8.2E-07 53.5 7.1 128 43-177 6-156 (173)
301 PRK00889 adenylylsulfate kinas 95.5 0.038 8.2E-07 54.4 7.4 27 42-68 4-30 (175)
302 PF07726 AAA_3: ATPase family 95.5 0.01 2.2E-07 53.9 2.7 31 45-75 2-32 (131)
303 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.025 5.5E-07 58.7 6.2 47 31-77 8-60 (235)
304 PRK05703 flhF flagellar biosyn 95.5 0.068 1.5E-06 60.3 9.9 35 42-76 221-257 (424)
305 KOG1514 Origin recognition com 95.4 0.07 1.5E-06 61.3 9.6 134 17-158 394-546 (767)
306 CHL00206 ycf2 Ycf2; Provisiona 95.4 0.091 2E-06 67.3 11.5 31 40-70 1628-1658(2281)
307 TIGR02858 spore_III_AA stage I 95.4 0.053 1.2E-06 57.0 8.2 130 29-165 99-233 (270)
308 cd03223 ABCD_peroxisomal_ALDP 95.4 0.041 8.8E-07 53.7 6.9 126 43-176 28-161 (166)
309 PTZ00301 uridine kinase; Provi 95.4 0.014 2.9E-07 59.1 3.6 29 42-70 3-31 (210)
310 PRK13531 regulatory ATPase Rav 95.4 0.019 4.2E-07 64.3 5.0 47 18-68 19-65 (498)
311 PRK00771 signal recognition pa 95.3 0.077 1.7E-06 59.7 9.8 29 41-69 94-122 (437)
312 PRK06067 flagellar accessory p 95.3 0.049 1.1E-06 56.5 7.7 49 29-77 12-60 (234)
313 PF00406 ADK: Adenylate kinase 95.3 0.073 1.6E-06 50.9 8.4 91 47-143 1-94 (151)
314 PRK05480 uridine/cytidine kina 95.3 0.016 3.5E-07 59.0 4.0 26 41-66 5-30 (209)
315 KOG1969 DNA replication checkp 95.3 0.039 8.5E-07 63.5 7.2 74 40-135 324-399 (877)
316 PRK03839 putative kinase; Prov 95.3 0.014 3.1E-07 57.8 3.4 24 44-67 2-25 (180)
317 TIGR00235 udk uridine kinase. 95.3 0.019 4E-07 58.4 4.3 28 40-67 4-31 (207)
318 cd03228 ABCC_MRP_Like The MRP 95.3 0.045 9.8E-07 53.6 6.9 125 43-176 29-168 (171)
319 cd01122 GP4d_helicase GP4d_hel 95.3 0.11 2.4E-06 55.2 10.4 52 42-99 30-82 (271)
320 COG1120 FepC ABC-type cobalami 95.2 0.027 5.9E-07 58.1 5.3 63 112-176 145-213 (258)
321 COG0563 Adk Adenylate kinase a 95.2 0.072 1.6E-06 52.3 8.1 94 44-144 2-99 (178)
322 cd03238 ABC_UvrA The excision 95.2 0.075 1.6E-06 52.2 8.2 22 43-64 22-43 (176)
323 cd02019 NK Nucleoside/nucleoti 95.2 0.016 3.4E-07 47.2 2.9 23 44-66 1-23 (69)
324 KOG2004 Mitochondrial ATP-depe 95.2 0.02 4.3E-07 65.6 4.6 54 18-71 410-467 (906)
325 PF00910 RNA_helicase: RNA hel 95.2 0.013 2.8E-07 52.5 2.5 26 45-70 1-26 (107)
326 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.054 1.2E-06 55.6 7.3 59 113-174 147-211 (254)
327 PRK04040 adenylate kinase; Pro 95.2 0.023 5.1E-07 56.5 4.6 25 43-67 3-27 (188)
328 cd03216 ABC_Carb_Monos_I This 95.2 0.031 6.7E-07 54.3 5.3 125 43-175 27-155 (163)
329 cd03115 SRP The signal recogni 95.2 0.032 6.8E-07 54.9 5.5 26 44-69 2-27 (173)
330 PRK05022 anaerobic nitric oxid 95.2 0.04 8.7E-07 64.1 7.2 50 17-66 185-234 (509)
331 PRK08233 hypothetical protein; 95.2 0.017 3.7E-07 57.3 3.5 26 42-67 3-28 (182)
332 PRK05986 cob(I)alamin adenolsy 95.1 0.035 7.5E-07 54.6 5.5 135 41-177 21-174 (191)
333 PRK00625 shikimate kinase; Pro 95.1 0.017 3.6E-07 56.6 3.3 24 44-67 2-25 (173)
334 PF00158 Sigma54_activat: Sigm 95.1 0.02 4.4E-07 55.7 3.8 45 21-65 1-45 (168)
335 PRK06762 hypothetical protein; 95.1 0.018 4E-07 56.1 3.6 24 43-66 3-26 (166)
336 PRK12726 flagellar biosynthesi 95.1 0.16 3.6E-06 55.2 11.0 36 41-76 205-240 (407)
337 COG4088 Predicted nucleotide k 95.1 0.068 1.5E-06 52.1 7.2 32 43-74 2-33 (261)
338 cd03247 ABCC_cytochrome_bd The 95.1 0.05 1.1E-06 53.7 6.7 125 43-176 29-170 (178)
339 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 36.0 0.9 20 604-623 1-20 (22)
340 TIGR03574 selen_PSTK L-seryl-t 95.0 0.12 2.6E-06 54.1 9.6 25 45-69 2-26 (249)
341 TIGR01420 pilT_fam pilus retra 94.9 0.075 1.6E-06 58.4 8.1 108 43-162 123-231 (343)
342 KOG1970 Checkpoint RAD17-RFC c 94.9 0.13 2.8E-06 57.5 9.7 41 26-66 89-134 (634)
343 COG0703 AroK Shikimate kinase 94.9 0.057 1.2E-06 51.9 6.1 27 44-70 4-30 (172)
344 cd00267 ABC_ATPase ABC (ATP-bi 94.9 0.045 9.8E-07 52.8 5.6 125 43-176 26-154 (157)
345 cd03230 ABC_DR_subfamily_A Thi 94.9 0.058 1.3E-06 53.0 6.4 122 43-175 27-168 (173)
346 PRK00131 aroK shikimate kinase 94.9 0.023 5.1E-07 55.7 3.6 25 43-67 5-29 (175)
347 TIGR03499 FlhF flagellar biosy 94.8 0.071 1.5E-06 56.9 7.4 28 41-68 193-220 (282)
348 KOG1947 Leucine rich repeat pr 94.8 0.0057 1.2E-07 71.0 -1.0 35 579-613 268-305 (482)
349 PRK06547 hypothetical protein; 94.8 0.042 9E-07 53.8 5.2 27 40-66 13-39 (172)
350 PRK09270 nucleoside triphospha 94.8 0.04 8.7E-07 56.9 5.4 31 39-69 30-60 (229)
351 cd03237 ABC_RNaseL_inhibitor_d 94.8 0.064 1.4E-06 56.0 6.9 23 43-65 26-48 (246)
352 PRK14722 flhF flagellar biosyn 94.8 0.15 3.3E-06 56.0 9.9 35 42-76 137-173 (374)
353 KOG4308 LRR-containing protein 94.8 0.0004 8.8E-09 78.9 -10.4 172 478-670 109-306 (478)
354 cd03240 ABC_Rad50 The catalyti 94.8 0.089 1.9E-06 53.2 7.6 60 116-177 132-197 (204)
355 PRK13947 shikimate kinase; Pro 94.8 0.023 5E-07 55.7 3.2 26 45-70 4-29 (171)
356 TIGR00150 HI0065_YjeE ATPase, 94.7 0.039 8.4E-07 51.0 4.3 40 27-66 7-46 (133)
357 PRK11823 DNA repair protein Ra 94.7 0.13 2.8E-06 58.6 9.3 49 28-76 66-114 (446)
358 PRK08356 hypothetical protein; 94.7 0.091 2E-06 52.7 7.3 20 43-62 6-25 (195)
359 cd00983 recA RecA is a bacter 94.7 0.079 1.7E-06 56.9 7.2 50 28-77 40-90 (325)
360 PRK12727 flagellar biosynthesi 94.7 0.1 2.2E-06 59.4 8.2 29 41-69 349-377 (559)
361 PRK12723 flagellar biosynthesi 94.7 0.15 3.3E-06 56.4 9.5 27 41-67 173-199 (388)
362 TIGR00455 apsK adenylylsulfate 94.6 0.098 2.1E-06 52.0 7.4 27 41-67 17-43 (184)
363 PRK10820 DNA-binding transcrip 94.6 0.11 2.4E-06 60.5 9.0 51 15-65 200-250 (520)
364 TIGR02012 tigrfam_recA protein 94.6 0.083 1.8E-06 56.8 7.2 50 28-77 40-90 (321)
365 TIGR00416 sms DNA repair prote 94.6 0.099 2.1E-06 59.5 8.1 50 27-76 79-128 (454)
366 COG1136 SalX ABC-type antimicr 94.6 0.13 2.7E-06 52.1 7.9 61 113-176 150-216 (226)
367 TIGR01360 aden_kin_iso1 adenyl 94.6 0.032 6.9E-07 55.6 3.7 26 41-66 2-27 (188)
368 TIGR00390 hslU ATP-dependent p 94.5 0.053 1.1E-06 59.7 5.5 52 19-70 12-75 (441)
369 COG2884 FtsE Predicted ATPase 94.5 0.14 3E-06 49.6 7.5 55 113-167 145-203 (223)
370 cd03246 ABCC_Protease_Secretio 94.5 0.067 1.4E-06 52.6 5.8 126 43-176 29-169 (173)
371 PRK09354 recA recombinase A; P 94.5 0.1 2.3E-06 56.5 7.5 51 28-78 45-96 (349)
372 COG1875 NYN ribonuclease and A 94.4 0.2 4.4E-06 53.3 9.2 37 124-163 352-390 (436)
373 PRK12724 flagellar biosynthesi 94.4 0.21 4.6E-06 55.3 9.9 25 42-66 223-247 (432)
374 PRK10751 molybdopterin-guanine 94.4 0.045 9.8E-07 53.1 4.2 30 40-69 4-33 (173)
375 PRK05201 hslU ATP-dependent pr 94.4 0.061 1.3E-06 59.3 5.6 52 19-70 15-78 (443)
376 cd03232 ABC_PDR_domain2 The pl 94.4 0.12 2.5E-06 51.8 7.4 22 43-64 34-55 (192)
377 KOG0729 26S proteasome regulat 94.4 0.098 2.1E-06 52.8 6.5 50 20-69 178-238 (435)
378 cd03285 ABC_MSH2_euk MutS2 hom 94.4 0.023 5E-07 58.2 2.2 24 41-64 29-52 (222)
379 KOG2035 Replication factor C, 94.3 0.69 1.5E-05 47.5 12.4 184 17-216 11-222 (351)
380 cd03217 ABC_FeS_Assembly ABC-t 94.3 0.086 1.9E-06 53.2 6.2 23 43-65 27-49 (200)
381 PRK03846 adenylylsulfate kinas 94.3 0.056 1.2E-06 54.4 4.9 37 40-76 22-58 (198)
382 cd02028 UMPK_like Uridine mono 94.3 0.045 9.7E-07 54.1 4.0 25 44-68 1-25 (179)
383 COG0488 Uup ATPase components 94.3 0.17 3.6E-06 58.5 9.2 55 117-177 451-511 (530)
384 cd00227 CPT Chloramphenicol (C 94.3 0.039 8.4E-07 54.3 3.6 25 43-67 3-27 (175)
385 COG1066 Sms Predicted ATP-depe 94.3 0.19 4.2E-06 54.4 8.8 101 26-134 77-179 (456)
386 PRK10416 signal recognition pa 94.3 0.065 1.4E-06 57.9 5.5 29 41-69 113-141 (318)
387 cd03289 ABCC_CFTR2 The CFTR su 94.2 0.21 4.5E-06 53.1 9.2 32 43-76 31-62 (275)
388 PF03205 MobB: Molybdopterin g 94.2 0.059 1.3E-06 50.7 4.5 32 43-74 1-32 (140)
389 COG0529 CysC Adenylylsulfate k 94.2 0.05 1.1E-06 51.8 3.9 37 40-76 21-57 (197)
390 cd02024 NRK1 Nicotinamide ribo 94.2 0.033 7.1E-07 55.1 2.8 23 44-66 1-23 (187)
391 PF08433 KTI12: Chromatin asso 94.2 0.14 3E-06 54.0 7.6 33 44-76 3-35 (270)
392 COG1428 Deoxynucleoside kinase 94.2 0.039 8.5E-07 54.4 3.2 26 42-67 4-29 (216)
393 cd03233 ABC_PDR_domain1 The pl 94.1 0.14 2.9E-06 51.8 7.2 25 43-67 34-58 (202)
394 PF06309 Torsin: Torsin; Inte 94.1 0.13 2.8E-06 46.7 6.2 47 19-65 25-76 (127)
395 PRK13765 ATP-dependent proteas 94.1 0.054 1.2E-06 63.8 4.8 76 14-98 26-102 (637)
396 PRK10867 signal recognition pa 94.1 0.3 6.5E-06 54.9 10.4 28 42-69 100-127 (433)
397 PF03308 ArgK: ArgK protein; 94.1 0.077 1.7E-06 54.3 5.2 43 27-69 14-56 (266)
398 cd02023 UMPK Uridine monophosp 94.1 0.034 7.4E-07 56.0 2.7 23 44-66 1-23 (198)
399 cd02025 PanK Pantothenate kina 94.1 0.037 7.9E-07 56.6 2.9 24 44-67 1-24 (220)
400 PRK13949 shikimate kinase; Pro 94.0 0.041 8.9E-07 53.8 3.1 24 44-67 3-26 (169)
401 cd00464 SK Shikimate kinase (S 94.0 0.044 9.5E-07 52.6 3.3 23 45-67 2-24 (154)
402 TIGR03600 phage_DnaB phage rep 94.0 0.29 6.2E-06 55.7 10.4 73 21-100 174-247 (421)
403 PRK06217 hypothetical protein; 94.0 0.04 8.6E-07 54.7 3.0 24 44-67 3-26 (183)
404 TIGR02788 VirB11 P-type DNA tr 94.0 0.079 1.7E-06 57.3 5.5 108 42-162 144-254 (308)
405 cd02020 CMPK Cytidine monophos 94.0 0.042 9E-07 52.2 3.0 24 44-67 1-24 (147)
406 cd03215 ABC_Carb_Monos_II This 93.9 0.14 3.1E-06 50.7 6.9 23 43-65 27-49 (182)
407 PRK01184 hypothetical protein; 93.9 0.15 3.3E-06 50.5 7.1 21 43-64 2-22 (184)
408 PRK13946 shikimate kinase; Pro 93.9 0.046 1E-06 54.3 3.2 25 43-67 11-35 (184)
409 COG0003 ArsA Predicted ATPase 93.9 0.068 1.5E-06 57.5 4.6 35 42-76 2-36 (322)
410 PRK13948 shikimate kinase; Pro 93.9 0.052 1.1E-06 53.6 3.5 29 41-69 9-37 (182)
411 cd01130 VirB11-like_ATPase Typ 93.9 0.062 1.3E-06 53.5 4.1 93 42-142 25-119 (186)
412 KOG1532 GTPase XAB1, interacts 93.9 0.052 1.1E-06 55.1 3.4 33 40-72 17-49 (366)
413 COG1936 Predicted nucleotide k 93.9 0.043 9.3E-07 52.2 2.7 20 44-63 2-21 (180)
414 PF12775 AAA_7: P-loop contain 93.8 0.043 9.4E-07 58.0 3.1 35 29-66 23-57 (272)
415 TIGR03740 galliderm_ABC gallid 93.8 0.18 4E-06 51.8 7.7 22 43-64 27-48 (223)
416 PF10236 DAP3: Mitochondrial r 93.8 2.6 5.7E-05 45.5 16.8 48 172-219 258-306 (309)
417 PRK12678 transcription termina 93.8 0.088 1.9E-06 59.8 5.4 91 43-135 417-515 (672)
418 PRK05439 pantothenate kinase; 93.8 0.08 1.7E-06 56.6 4.9 29 40-68 84-112 (311)
419 PF13481 AAA_25: AAA domain; P 93.8 0.15 3.3E-06 51.0 6.8 25 43-67 33-57 (193)
420 cd03281 ABC_MSH5_euk MutS5 hom 93.7 0.081 1.8E-06 53.8 4.7 23 42-64 29-51 (213)
421 TIGR02322 phosphon_PhnN phosph 93.7 0.052 1.1E-06 53.7 3.3 25 43-67 2-26 (179)
422 PF03969 AFG1_ATPase: AFG1-lik 93.7 0.16 3.4E-06 56.0 7.1 100 41-163 61-169 (362)
423 PRK11174 cysteine/glutathione 93.7 0.18 4E-06 60.1 8.4 24 43-66 377-400 (588)
424 COG1224 TIP49 DNA helicase TIP 93.7 0.12 2.5E-06 54.8 5.7 55 17-71 37-94 (450)
425 PF06068 TIP49: TIP49 C-termin 93.7 0.09 2E-06 56.5 5.0 60 17-76 22-84 (398)
426 KOG1051 Chaperone HSP104 and r 93.6 0.52 1.1E-05 57.0 11.7 105 19-136 562-673 (898)
427 PF00560 LRR_1: Leucine Rich R 93.6 0.026 5.6E-07 34.2 0.5 21 581-601 1-21 (22)
428 TIGR02238 recomb_DMC1 meiotic 93.6 0.2 4.2E-06 54.1 7.6 50 28-77 82-137 (313)
429 cd00071 GMPK Guanosine monopho 93.6 0.049 1.1E-06 51.1 2.6 26 44-69 1-26 (137)
430 TIGR00764 lon_rel lon-related 93.6 0.11 2.3E-06 61.6 5.9 73 18-99 17-90 (608)
431 KOG0736 Peroxisome assembly fa 93.5 0.88 1.9E-05 53.2 12.8 143 19-183 672-848 (953)
432 cd02021 GntK Gluconate kinase 93.5 0.052 1.1E-06 51.9 2.8 22 44-65 1-22 (150)
433 PTZ00088 adenylate kinase 1; P 93.5 0.32 6.8E-06 50.0 8.6 22 45-66 9-30 (229)
434 TIGR02782 TrbB_P P-type conjug 93.5 0.15 3.3E-06 54.7 6.5 88 43-142 133-223 (299)
435 PF03266 NTPase_1: NTPase; In 93.5 0.063 1.4E-06 52.2 3.3 24 45-68 2-25 (168)
436 PLN02318 phosphoribulokinase/u 93.5 0.086 1.9E-06 60.4 4.8 35 32-66 55-89 (656)
437 PF07724 AAA_2: AAA domain (Cd 93.4 0.05 1.1E-06 53.1 2.6 35 42-76 3-38 (171)
438 PRK05057 aroK shikimate kinase 93.4 0.067 1.4E-06 52.5 3.4 25 43-67 5-29 (172)
439 TIGR00176 mobB molybdopterin-g 93.4 0.085 1.8E-06 50.6 4.1 33 44-76 1-33 (155)
440 PRK13657 cyclic beta-1,2-gluca 93.4 0.21 4.6E-06 59.6 8.4 22 43-64 362-383 (588)
441 cd01129 PulE-GspE PulE/GspE Th 93.4 0.33 7.2E-06 51.1 8.8 105 22-141 62-167 (264)
442 PF13504 LRR_7: Leucine rich r 93.4 0.052 1.1E-06 30.5 1.5 16 604-619 2-17 (17)
443 COG1703 ArgK Putative periplas 93.4 0.14 3E-06 53.2 5.6 46 28-73 37-82 (323)
444 PRK05342 clpX ATP-dependent pr 93.4 0.085 1.8E-06 59.1 4.6 52 19-70 71-136 (412)
445 COG3640 CooC CO dehydrogenase 93.4 0.097 2.1E-06 52.4 4.4 26 44-69 2-27 (255)
446 KOG0736 Peroxisome assembly fa 93.4 0.87 1.9E-05 53.2 12.4 171 20-218 402-600 (953)
447 cd03236 ABC_RNaseL_inhibitor_d 93.3 0.33 7.2E-06 50.9 8.7 23 43-65 27-49 (255)
448 PLN02348 phosphoribulokinase 93.3 0.11 2.5E-06 56.8 5.3 30 39-68 46-75 (395)
449 PF08298 AAA_PrkA: PrkA AAA do 93.3 0.095 2.1E-06 56.2 4.5 52 18-69 60-115 (358)
450 COG3910 Predicted ATPase [Gene 93.3 0.45 9.8E-06 46.0 8.5 68 107-176 130-202 (233)
451 cd03243 ABC_MutS_homologs The 93.3 0.066 1.4E-06 54.1 3.2 22 43-64 30-51 (202)
452 TIGR01425 SRP54_euk signal rec 93.3 0.52 1.1E-05 52.8 10.4 35 42-76 100-134 (429)
453 PF00625 Guanylate_kin: Guanyl 93.3 0.086 1.9E-06 52.3 4.0 35 42-76 2-36 (183)
454 cd01125 repA Hexameric Replica 93.2 0.58 1.3E-05 48.6 10.3 24 44-67 3-26 (239)
455 PRK13975 thymidylate kinase; P 93.2 0.077 1.7E-06 53.3 3.7 26 43-68 3-28 (196)
456 PRK03731 aroL shikimate kinase 93.2 0.073 1.6E-06 52.1 3.4 24 44-67 4-27 (171)
457 COG0467 RAD55 RecA-superfamily 93.2 0.21 4.5E-06 52.8 7.0 42 35-76 16-57 (260)
458 PRK14249 phosphate ABC transpo 93.2 0.31 6.7E-06 51.1 8.3 24 43-66 31-54 (251)
459 PRK10463 hydrogenase nickel in 93.2 0.15 3.4E-06 53.6 5.8 37 40-76 102-138 (290)
460 KOG0743 AAA+-type ATPase [Post 93.2 0.76 1.7E-05 50.7 11.2 48 20-67 201-260 (457)
461 cd01124 KaiC KaiC is a circadi 93.1 0.15 3.2E-06 50.7 5.5 32 45-76 2-33 (187)
462 cd01428 ADK Adenylate kinase ( 93.1 0.81 1.8E-05 45.7 10.9 22 45-66 2-23 (194)
463 PF01078 Mg_chelatase: Magnesi 93.1 0.11 2.4E-06 51.7 4.4 43 18-64 2-44 (206)
464 COG1124 DppF ABC-type dipeptid 93.1 0.082 1.8E-06 53.3 3.5 22 43-64 34-55 (252)
465 TIGR03877 thermo_KaiC_1 KaiC d 93.1 0.25 5.4E-06 51.3 7.3 48 29-76 8-55 (237)
466 TIGR03263 guanyl_kin guanylate 93.1 0.065 1.4E-06 53.0 2.8 24 43-66 2-25 (180)
467 PRK12339 2-phosphoglycerate ki 93.1 0.086 1.9E-06 52.8 3.6 25 42-66 3-27 (197)
468 COG1102 Cmk Cytidylate kinase 93.1 0.08 1.7E-06 49.7 3.0 26 44-69 2-27 (179)
469 PF03215 Rad17: Rad17 cell cyc 93.1 0.11 2.3E-06 60.0 4.8 61 15-77 15-78 (519)
470 PRK09435 membrane ATPase/prote 93.0 0.13 2.9E-06 55.6 5.2 41 29-69 43-83 (332)
471 cd03282 ABC_MSH4_euk MutS4 hom 93.0 0.099 2.1E-06 52.7 4.0 117 41-167 28-157 (204)
472 PRK04220 2-phosphoglycerate ki 93.0 0.14 3E-06 54.2 5.2 25 42-66 92-116 (301)
473 PRK04182 cytidylate kinase; Pr 93.0 0.078 1.7E-06 52.3 3.3 24 44-67 2-25 (180)
474 TIGR03575 selen_PSTK_euk L-ser 92.9 0.71 1.5E-05 50.1 10.6 23 45-67 2-24 (340)
475 TIGR01818 ntrC nitrogen regula 92.9 0.35 7.6E-06 55.9 9.0 48 19-66 134-181 (463)
476 COG0714 MoxR-like ATPases [Gen 92.9 0.13 2.9E-06 56.2 5.2 56 17-76 22-77 (329)
477 cd03213 ABCG_EPDR ABCG transpo 92.9 0.27 5.8E-06 49.3 7.0 24 43-66 36-59 (194)
478 PRK14738 gmk guanylate kinase; 92.9 0.091 2E-06 53.2 3.6 29 37-65 8-36 (206)
479 PRK14493 putative bifunctional 92.9 0.12 2.5E-06 54.6 4.4 33 43-76 2-34 (274)
480 PF02374 ArsA_ATPase: Anion-tr 92.9 0.1 2.2E-06 56.2 4.1 34 43-76 2-35 (305)
481 COG2842 Uncharacterized ATPase 92.8 0.43 9.2E-06 49.8 8.3 158 16-196 69-228 (297)
482 PF03193 DUF258: Protein of un 92.8 0.15 3.3E-06 48.8 4.7 36 25-65 23-58 (161)
483 PHA02244 ATPase-like protein 92.8 0.1 2.2E-06 56.6 3.9 47 20-70 97-147 (383)
484 cd03287 ABC_MSH3_euk MutS3 hom 92.8 0.13 2.7E-06 52.6 4.4 118 41-167 30-160 (222)
485 smart00534 MUTSac ATPase domai 92.8 0.046 9.9E-07 54.4 1.2 21 44-64 1-21 (185)
486 PRK10923 glnG nitrogen regulat 92.8 0.16 3.6E-06 58.7 6.0 47 19-65 138-184 (469)
487 PRK00300 gmk guanylate kinase; 92.8 0.084 1.8E-06 53.5 3.2 25 42-66 5-29 (205)
488 TIGR00958 3a01208 Conjugate Tr 92.8 0.41 8.8E-06 58.5 9.6 22 43-64 508-529 (711)
489 PRK14530 adenylate kinase; Pro 92.8 0.091 2E-06 53.7 3.4 23 44-66 5-27 (215)
490 COG0468 RecA RecA/RadA recombi 92.7 0.23 5.1E-06 52.1 6.3 46 32-77 50-95 (279)
491 TIGR00554 panK_bact pantothena 92.7 0.094 2E-06 55.7 3.5 28 40-67 60-87 (290)
492 cd01983 Fer4_NifH The Fer4_Nif 92.7 0.14 3E-06 44.3 4.1 25 44-68 1-25 (99)
493 PRK10875 recD exonuclease V su 92.7 0.46 1E-05 56.1 9.5 27 42-68 167-193 (615)
494 PRK06731 flhF flagellar biosyn 92.7 0.54 1.2E-05 49.5 9.0 35 42-76 75-109 (270)
495 PRK15453 phosphoribulokinase; 92.7 0.15 3.2E-06 53.3 4.7 27 41-67 4-30 (290)
496 PRK10078 ribose 1,5-bisphospho 92.7 0.075 1.6E-06 52.9 2.6 24 43-66 3-26 (186)
497 PRK08533 flagellar accessory p 92.7 0.2 4.2E-06 51.7 5.7 46 31-76 13-58 (230)
498 TIGR00959 ffh signal recogniti 92.6 0.42 9.1E-06 53.8 8.7 26 42-67 99-124 (428)
499 KOG3347 Predicted nucleotide k 92.6 0.097 2.1E-06 48.3 2.9 22 44-65 9-30 (176)
500 PF00437 T2SE: Type II/IV secr 92.6 0.068 1.5E-06 56.8 2.3 127 19-160 104-231 (270)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.1e-90 Score=862.05 Aligned_cols=820 Identities=26% Similarity=0.379 Sum_probs=619.6
Q ss_pred ChHHHHHHhhcccCCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcccc-
Q 045202 1 EIVNAILKRLDDTFQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNV- 79 (887)
Q Consensus 1 ~i~~~~~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~- 79 (887)
+||++|+++++.+++.+.+++|||++++++|..+|..+.+++++||||||||+||||||+++|+++..+|++.+|+...
T Consensus 166 ~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~ 245 (1153)
T PLN03210 166 EIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAF 245 (1153)
T ss_pred HHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccc
Confidence 6999999999999999999999999999999999988788899999999999999999999999999999999998642
Q ss_pred -HHHH---h-----cC-CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHHHHHHhcCCCCCC
Q 045202 80 -REAE---E-----TG-RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFLVGRLDLFA 149 (887)
Q Consensus 80 -~~~s---~-----~~-~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~ 149 (887)
+... . .+ ....++++++.++......... ....+++++++||+||||||||+.++|+.+.+...|++
T Consensus 246 v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~ 322 (1153)
T PLN03210 246 ISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFG 322 (1153)
T ss_pred cccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCC
Confidence 1111 0 01 1346777888887665433221 13568899999999999999999999999999889999
Q ss_pred CCcEEEEEeCChhhhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHH-----
Q 045202 150 SGSRIIITTRDRQLLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQ----- 224 (887)
Q Consensus 150 ~gsrIiiTTR~~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~----- 224 (887)
+|||||||||+++++..++++++|+|+.|++++||+||+++||++..+++++++++++|+++|+|+|||++++|+
T Consensus 323 ~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k 402 (1153)
T PLN03210 323 SGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR 402 (1153)
T ss_pred CCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC
Confidence 999999999999999988888999999999999999999999998888888999999999999999999999994
Q ss_pred -------HHhHhh-cCCCce--EEEeeec-------cccceeecccch----hhhHHHHh-cc-----------------
Q 045202 225 -------AVFIIE-ITKCKI--EIKINLI-------LLLILDIRMHAD----DELLMIAS-AD----------------- 265 (887)
Q Consensus 225 -------~L~~l~-~~~~~i--~l~~sy~-------k~~fl~~a~~~~----~~~~~~l~-~~----------------- 265 (887)
++.+++ .++.+| +|++||| |.||+|||||.. +++..+++ ++
T Consensus 403 ~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~ 482 (1153)
T PLN03210 403 DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIH 482 (1153)
T ss_pred CHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEE
Confidence 444555 455667 9999999 889999999654 44555554 32
Q ss_pred -CCceEeeCCchhhHHHHHHHHHhhhcccCcCCeEeecchhHHHHHHhcCCC---------------------------C
Q 045202 266 -AYLNFFVHFATHMFHAMGREVVRQESINDLGRRSRIWHHKEIYKILSENRT---------------------------P 317 (887)
Q Consensus 266 -~~~~i~mh~a~~ll~~~~~~iv~~~~~~~~~~~s~l~~~~~i~~~l~~~~~---------------------------~ 317 (887)
..+.+.|| +++|+||++++++++ .++++|+|+|+++++++++.+++| +
T Consensus 483 ~~~~~~~MH---dLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~ 558 (1153)
T PLN03210 483 VREDIVEMH---SLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558 (1153)
T ss_pred EcCCeEEhh---hHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence 24679999 999999999999998 789999999999999999987765 6
Q ss_pred CccEEEeecccc-ccCccceeccCCCCC--CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCce
Q 045202 318 NLRILKFYRSMN-EENKCKVSYFQVPGF--TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQ 394 (887)
Q Consensus 318 ~Lr~L~l~~~~~-~~~~~~~~~p~~~~~--~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 394 (887)
+|++|+++.... .......++|+++.. .+||+|+|.+|+++++|+.+.+++|+.|+|++|+++.+|.++..+++|+.
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~ 638 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRN 638 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCE
Confidence 788888876532 123355778888877 78999999999999999999999999999999999999999999999999
Q ss_pred eecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccC-CCCccEEEeecCCCCCCCccccc-CCccEEEccCCC
Q 045202 395 IITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-LGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTA 472 (887)
Q Consensus 395 L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~ 472 (887)
|++++++.+..+|. +..+++|+.|+|++|..+..+|..+. +++|+.|++++|..++.+|.... ++|+.|++++|.
T Consensus 639 L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 639 IDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred EECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 99999988877764 56789999999999999999999885 99999999999999999998665 899999999874
Q ss_pred -CCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCC-------CCchhhcCCCCCceeeccCcc-
Q 045202 473 -PEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQ-------RLPEELGNLQALDSLHAVGTA- 543 (887)
Q Consensus 473 -i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~-------~~p~~l~~l~~L~~L~L~~n~- 543 (887)
+..+|.. ..+|+.|+|++|. +..+|..+ .+++|++|.+.++.... ..|......++|+.|++++|.
T Consensus 716 ~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 716 RLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred Cccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 4455542 4689999999987 56778765 68889999887754211 112223345789999999885
Q ss_pred CccCCccccCCCCCCEEEcccc-CCCcccccccccCCCcccEEecccCCCC-CccccccCCCCCcEEEcCCCCCcccchh
Q 045202 544 ITEVPPSIVRLKRVRGIYLGRN-RGLSLPITFSVDGLQNLLDLSLNDCCIM-ELPESLGLLSSVRELHLNGNNFERIPES 621 (887)
Q Consensus 544 i~~lp~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~L~~n~l~~lp~~ 621 (887)
+..+|.+++++++|+.|++++| .+. .+|..+ .+++|+.|++++|... .+|.. .++|+.|+|++|.++.+|.+
T Consensus 791 l~~lP~si~~L~~L~~L~Ls~C~~L~--~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~s 864 (1153)
T PLN03210 791 LVELPSSIQNLHKLEHLEIENCINLE--TLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWW 864 (1153)
T ss_pred ccccChhhhCCCCCCEEECCCCCCcC--eeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHH
Confidence 4478999999999999999654 444 345544 7889999999998544 35543 46899999999999999999
Q ss_pred hhcCCCccEeeccccccccccCCCccccc-------ccCccceEecccCCCCCCCC--cc------hhhhhcccCcccCC
Q 045202 622 IIQLSNLKSLFIRYCERLQFLPKLPCNLL-------VGCASLHGTGIIRRFIPNSS--ES------DFLDLYLSDNFKLD 686 (887)
Q Consensus 622 l~~l~~L~~L~L~~c~~l~~lp~lp~~l~-------~~~~~L~~L~l~~N~l~~~~--~~------~~~~l~~l~~l~L~ 686 (887)
+..+++|+.|+|++|+.++.+|..+..+. .+|++|+.+.+..+...... .. ....+....|++|+
T Consensus 865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 99999999999999998888876544332 25555555544322111000 00 00001111233332
Q ss_pred CCCCCcchhHHHHHhHHHHHHhhhhhhhcCCCCCCceEEEccCCCCCCCccccCCCcEEE-EEcCCCCCCCCCeeeEEEE
Q 045202 687 PNDLGGIFKGALQKIQLLATARLKEAREKISYPWLQGRGFLPWNEIPKWFSFQSVGSCVT-LEMPPGFFNNERLFGFAFS 765 (887)
Q Consensus 687 ~N~l~~i~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~pg~~ip~wf~~~~~g~~i~-~~lp~~~~~~~~~~g~~~c 765 (887)
+..+ +. + ......+++||.++|+||.||..|++++ |++|+.|+ +..|.||++|
T Consensus 945 ~~a~------------------l~-~------~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c 998 (1153)
T PLN03210 945 QEAL------------------LQ-Q------QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRAC 998 (1153)
T ss_pred chhh------------------hc-c------cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEE
Confidence 2211 00 0 0112347899999999999999999998 99999999 7789999999
Q ss_pred EEEeecCcccccccccCcccceeEEEeccCCCCCceeEeeeeccceeeeecCCeEEEEEeecchhhhhhhc-ccCCCCee
Q 045202 766 VILRFSEKFSFFCISKKKFNMYCEYIVSPKDNHQHCSTSRRTLLGVVYCVVYDHLFFGYYFFDRKEFNDFR-KYNCIPVA 844 (887)
Q Consensus 766 ~v~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~-~~~~~~~~ 844 (887)
+|+++.... .....+.+.|.|.+. ...+.++........+......+|++++...... ..+.. ...+.++|
T Consensus 999 ~v~~~~~~~----~~~~~~~~~~~c~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~ 1070 (1153)
T PLN03210 999 AVVDSESFF----IISVSFDIQVCCRFI--DRLGNHFDSPYQPHVFSVTKKGSHLVIFDCCFPL--NEDNAPLAELNYDH 1070 (1153)
T ss_pred EEEecCccc----cCCCceeEEEEEEEE--CCCCCccccCCCceeEeeeccccceEEecccccc--cccccchhccCCce
Confidence 999887642 122245566666662 2222222110000000001124455444322110 00000 11234666
Q ss_pred EEEEEEecCccCcccEEeeccEEEEcCCCCC
Q 045202 845 VRFYFKEGNEFLDCPAKKCGIRLFHAPDSRE 875 (887)
Q Consensus 845 ~~~~~~~~~~~~~~~v~~cg~~l~~~~~~~~ 875 (887)
+++.|+.......++||+|||+++|++++.+
T Consensus 1071 ~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~~ 1101 (1153)
T PLN03210 1071 VDIQFRLTNKNSQLKLKGCGIRLSEDDSSLN 1101 (1153)
T ss_pred eeEEEEEecCCCCeEEEeeeEEEeccCCCcc
Confidence 5555532222334799999999999776664
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-54 Score=513.50 Aligned_cols=556 Identities=21% Similarity=0.255 Sum_probs=366.7
Q ss_pred ccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH---HhcccceEEEccccHHHHhcCCHHHHHHHHHHH
Q 045202 22 VGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK---ISRHSAGSYFANNVREAEETGRLGDLRQQLLST 98 (887)
Q Consensus 22 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~ 98 (887)
||.+..++++.+.|..++. .++||+||||+||||||+.++|+ ++++|+..+|+ .+|+.+...+++++|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV----~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWV----VVSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEE----EEcccccHHhHHHHHHHH
Confidence 9999999999999986544 89999999999999999999993 78999999999 789999999999999998
Q ss_pred HhcCCCCCC--CcccchHHHHHhhCCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhh-cCCCceEec
Q 045202 99 LLNDGNVKS--FPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTN-CGVDEKYQM 175 (887)
Q Consensus 99 l~~~~~~~~--~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~-~~~~~~~~v 175 (887)
+........ ..++....+.+.|++||++|||||||+..+|+.+..++|....||+|++|||++.|+.. ++++..+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 876444332 23577888999999999999999999999999999999988899999999999999998 888899999
Q ss_pred CCCChHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHhhCCChHHHHHHHHHHhHh-------------hcC--------C
Q 045202 176 KELVHADALKLFSRHAFGGD-HPYESHTELTCKTIKYARGVPLALKVWHQAVFII-------------EIT--------K 233 (887)
Q Consensus 176 ~~L~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~l-------------~~~--------~ 233 (887)
+.|+.+|||+||++.||... ...++.+++|++|+++|+|+|||+.++|.+++.. ... .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999999863 4445689999999999999999999999444322 110 2
Q ss_pred Cce--EEEeeec------cccceeecccchhhhHHHHhccCCceEeeCCchhhHHH---------HHHHHHhh----hcc
Q 045202 234 CKI--EIKINLI------LLLILDIRMHADDELLMIASADAYLNFFVHFATHMFHA---------MGREVVRQ----ESI 292 (887)
Q Consensus 234 ~~i--~l~~sy~------k~~fl~~a~~~~~~~~~~l~~~~~~~i~mh~a~~ll~~---------~~~~iv~~----~~~ 292 (887)
+.| +++.||| |.||+|||.||+||.++. ...+..|+||++++. .|.+++.+ .-.
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~-----e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKK-----EKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccch-----HHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 234 9999999 999999999999998873 334444444444322 11111100 000
Q ss_pred cCc---CCeEeecchhHHHHHH---hcCCCCCccEEEeeccccccCccceeccCCCCCCCeeEEEecCCCCCCCCCCCCC
Q 045202 293 NDL---GRRSRIWHHKEIYKIL---SENRTPNLRILKFYRSMNEENKCKVSYFQVPGFTEVRYLHWHRYPLKSLPSNIHP 366 (887)
Q Consensus 293 ~~~---~~~s~l~~~~~i~~~l---~~~~~~~Lr~L~l~~~~~~~~~~~~~~p~~~~~~~Lr~L~l~~~~l~~lp~~~~~ 366 (887)
.+. ++......|+-++++. +.+.+.+... .+.... ....+.|+.......|...+.++.+..++.....
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~----~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~ 544 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDG----VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSEN 544 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECC----cCccccccccchhheeEEEEeccchhhccCCCCC
Confidence 000 0111111111111111 0000100000 111100 0111233333335566666666665555554433
Q ss_pred CCccEEEcCCCCCccchhhhcCCccCceeecCcCcC-CCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEE
Q 045202 367 EKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNF-FSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELN 445 (887)
Q Consensus 367 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~ 445 (887)
++|+. |-+..|.. +.. ....+|.. ++.|++||
T Consensus 545 ~~L~t-----------------------Lll~~n~~~l~~-is~~ff~~-----------------------m~~LrVLD 577 (889)
T KOG4658|consen 545 PKLRT-----------------------LLLQRNSDWLLE-ISGEFFRS-----------------------LPLLRVLD 577 (889)
T ss_pred Cccce-----------------------EEEeecchhhhh-cCHHHHhh-----------------------CcceEEEE
Confidence 33333 33333321 111 01122333 44445555
Q ss_pred eecCCCCCCCccccc--CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC--CC
Q 045202 446 LSGCSKLKRLPEISS--GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS--NL 521 (887)
Q Consensus 446 L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~--~~ 521 (887)
|++|..+..+|.... -+|++|+|+++.+..+|.++++|..|.+||+..+..+..+|..+..|++|++|.+..-. ..
T Consensus 578 Ls~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~ 657 (889)
T KOG4658|consen 578 LSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND 657 (889)
T ss_pred CCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccc
Confidence 555555555554444 55666666667888999999999999999999988888888877789999999997643 11
Q ss_pred CCCchhhcCCCCCceeeccCccCccCCccccCCCCCCE----EEccccCCCcccccccccCCCcccEEecccCCCCCccc
Q 045202 522 QRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRG----IYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE 597 (887)
Q Consensus 522 ~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~----L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 597 (887)
...-..+.++++|+.|....... .+-..+..+.+|.. +.+.+.. ....+..+..+.+|+.|.+.+|.+.+...
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~i~~~~~~e~~~ 734 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELSILDCGISEIVI 734 (889)
T ss_pred hhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEEEEcCCCchhhc
Confidence 22223345555555555544333 22222333344432 2222211 12345557788999999999998875321
Q ss_pred -ccc------CCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccC
Q 045202 598 -SLG------LLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLP 643 (887)
Q Consensus 598 -~~~------~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 643 (887)
+.. .+++|..+...++..-..+.+....++|+.|.+..|+.+..+.
T Consensus 735 ~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 735 EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 111 1345555555555555666667778999999999998766554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-34 Score=361.14 Aligned_cols=378 Identities=19% Similarity=0.233 Sum_probs=188.1
Q ss_pred ccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCCc-cchhhhcCCccCceeecCcCcCCCCCCCCcccc
Q 045202 338 YFQVPGF-TEVRYLHWHRYPLK-SLPSNI-HPEKLVLLKMPHSNIE-QVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQ 413 (887)
Q Consensus 338 ~p~~~~~-~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 413 (887)
+|..++. .+|++|++++|.+. .+|..+ .+++|++|+|++|.+. .+|..+..+++|+.|++++|+..... |..++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~l~ 233 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI--PYEIG 233 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC--ChhHh
Confidence 3333433 45555555555443 334333 4445555555554444 23344444555555555444422222 22234
Q ss_pred cCCCCcEEEecCCCCCCCCCCccC-CCCccEEEeecC------------------------CCCCCCccccc--CCccEE
Q 045202 414 HLNKLAILNLSGRKNLQSLPARIH-LGLLKELNLSGC------------------------SKLKRLPEISS--GNIETM 466 (887)
Q Consensus 414 ~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~------------------------~~l~~lp~~~~--~~L~~L 466 (887)
.+++|++|++++|.+.+.+|..+. +++|++|+|++| .....+|.... ++|++|
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 444444444444444444444432 444444444444 43333433322 444444
Q ss_pred EccCCCCC-CCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCc
Q 045202 467 RLDGTAPE-ELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAIT 545 (887)
Q Consensus 467 ~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~ 545 (887)
++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 44444443 33334444444444554444444444444444445555555544444444444444445555555555444
Q ss_pred -cCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCc-ccchhh
Q 045202 546 -EVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFE-RIPESI 622 (887)
Q Consensus 546 -~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~-~lp~~l 622 (887)
.+|..+..+++|+.|++++|.+. ...|..+..+++|+.|++++|.+++ +|..+..+++|+.|+|++|++. .+|..+
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFS-GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEee-eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 34445555555666666555533 2344555666666666666666654 4445555666666666655544 233221
Q ss_pred hcCCCccEeeccccccccccCCCcc--------------------cccccCccceEecccCCCCCCCCcchhhhhcccCc
Q 045202 623 IQLSNLKSLFIRYCERLQFLPKLPC--------------------NLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDN 682 (887)
Q Consensus 623 ~~l~~L~~L~L~~c~~l~~lp~lp~--------------------~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~ 682 (887)
..++|+.|+|++|+..+.+|.... ....++++|+.|++++|.+++..+..+..+..|+.
T Consensus 473 -~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 473 -GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred -ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 223444444444433322221100 01124566666666666666666666666666666
Q ss_pred ccCCCCCCCcchhHHHHHhHHHHHHhhhhhhhcCCCC
Q 045202 683 FKLDPNDLGGIFKGALQKIQLLATARLKEAREKISYP 719 (887)
Q Consensus 683 l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~~~~~ 719 (887)
|+|++|++++.+|..+.+++.|+.+++++|.+.+.+|
T Consensus 552 L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred EECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 7777777766666666666666677776666555444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.7e-34 Score=357.66 Aligned_cols=367 Identities=19% Similarity=0.230 Sum_probs=230.6
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCCccEEEcCCCCCc-cchhhhcCCccC
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLK-SLPSNI-HPEKLVLLKMPHSNIE-QVFDSVQHYLKL 392 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~n~i~-~l~~~~~~l~~L 392 (887)
++|+.|++.++. ....+|..++. .+|+.|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+..+++|
T Consensus 188 ~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 188 TSLEFLTLASNQ-----LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred cCCCeeeccCCC-----CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 355666665432 12234555554 66666666666554 444444 5566666666666655 344556666666
Q ss_pred ceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCccccc--CCccEEEcc
Q 045202 393 NQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISS--GNIETMRLD 469 (887)
Q Consensus 393 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~ 469 (887)
+.|++++|...... |..+..+++|++|++++|.+.+.+|..+ ++++|++|++++|...+.+|.... ++|+.|+++
T Consensus 263 ~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 263 QYLFLYQNKLSGPI--PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CEEECcCCeeeccC--chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 66666655433222 2334455666666666666555555554 366666666666555444444333 556666666
Q ss_pred CCCCC-CCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCc-cC
Q 045202 470 GTAPE-ELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAIT-EV 547 (887)
Q Consensus 470 ~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~l 547 (887)
+|.+. .+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.++ .+
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~ 420 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence 65554 45555555555666666555555555555555555555555555554445554555555555555554444 33
Q ss_pred Ccccc------------------------CCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCC
Q 045202 548 PPSIV------------------------RLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLL 602 (887)
Q Consensus 548 p~~l~------------------------~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l 602 (887)
|..+. .+++|+.|++++|.+.. .+|.. ...++|+.|++++|++++ +|..+..+
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG-GLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee-ecCcc-cccccceEEECcCCccCCccChhhhhh
Confidence 44444 45555555555444321 22332 234677888888888875 77788888
Q ss_pred CCCcEEEcCCCCCc-ccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccC
Q 045202 603 SSVRELHLNGNNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSD 681 (887)
Q Consensus 603 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~ 681 (887)
++|+.|+|++|++. .+|..+..+++|++|+|++|...+.+|.. +.++++|+.|++++|.+++..|..+..+..|+
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS----FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh----HhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 99999999999888 78888999999999999999866666543 23679999999999999999999999999999
Q ss_pred cccCCCCCCCcchhH
Q 045202 682 NFKLDPNDLGGIFKG 696 (887)
Q Consensus 682 ~l~L~~N~l~~i~~~ 696 (887)
.+++++|.+.+.+|.
T Consensus 575 ~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 575 QVNISHNHLHGSLPS 589 (968)
T ss_pred EEeccCCcceeeCCC
Confidence 999999999998774
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.5e-35 Score=315.07 Aligned_cols=248 Identities=24% Similarity=0.292 Sum_probs=190.7
Q ss_pred ccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH--HhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhc
Q 045202 24 VELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK--ISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLN 101 (887)
Q Consensus 24 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~ 101 (887)
||+++++|.+.|....++.++|+|+||||+||||||+++|++ ++.+|+.++|+ ..+......+++++++.++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv----~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWV----SLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEE----EEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccc----ccccccccccccccccccccc
Confidence 789999999999986688999999999999999999999987 89999999999 445556668999999999877
Q ss_pred CCC---CCCCcccchHHHHHhhCCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCC-CceEecCC
Q 045202 102 DGN---VKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGV-DEKYQMKE 177 (887)
Q Consensus 102 ~~~---~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~-~~~~~v~~ 177 (887)
... ...+.......+++.++++++||||||||+..+|+.+...++.+..|++||||||++.++..++. ...|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 643 23455667888999999999999999999999999998888777889999999999999877644 67999999
Q ss_pred CChHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHhhCCChHHHHHHHHHHhHh-------------h-cC------CCce
Q 045202 178 LVHADALKLFSRHAFGGD-HPYESHTELTCKTIKYARGVPLALKVWHQAVFII-------------E-IT------KCKI 236 (887)
Q Consensus 178 L~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~l-------------~-~~------~~~i 236 (887)
|+.+||++||.+.++... .+.+...+.+++|+++|+|+|||++++|+.++.. . .. ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998765 3445667889999999999999999999666322 1 10 1223
Q ss_pred --EEEeeec------cccceeecccchhhhHHHHhccCCceEeeCCchhhHH
Q 045202 237 --EIKINLI------LLLILDIRMHADDELLMIASADAYLNFFVHFATHMFH 280 (887)
Q Consensus 237 --~l~~sy~------k~~fl~~a~~~~~~~~~~l~~~~~~~i~mh~a~~ll~ 280 (887)
++..||+ |.||+|+|+||.++.+. +...+.+|++++++.
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~-----~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIP-----RERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EE-----HHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceEC-----HHHHHHHHHHCCCCc
Confidence 7788888 99999999999987765 244567777777654
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=8e-33 Score=294.77 Aligned_cols=360 Identities=19% Similarity=0.163 Sum_probs=292.7
Q ss_pred CCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEE
Q 045202 345 TEVRYLHWHRYPLKSLPSNI--HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILN 422 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 422 (887)
...+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+|.+|... .........++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~--sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS--SVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc--cccHHHHHhHhhhhhhh
Confidence 55677888888877665442 788888888888888888877777777888888876522 22344556777888888
Q ss_pred ecCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCccccc---CCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCC
Q 045202 423 LSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISS---GNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTL 497 (887)
Q Consensus 423 L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~ 497 (887)
|+.|.+...--..+ .-.++++|+|++|. ++.+....+ .+|..|.|++|+|+.+|.. |.+|++|+.|+|..|.+-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 88887654332333 35788889998875 333333222 6888999999999999976 777999999999998754
Q ss_pred ccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccc
Q 045202 498 KSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSV 576 (887)
Q Consensus 498 ~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~ 576 (887)
..--..|.+|++|+.|.+..|.+...-...|..|.++++|+|..|++..+.. ++.+|++|+.|+++.|.+..+.. ..+
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~-d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI-DSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec-chh
Confidence 4435568899999999999998877767788999999999999999998876 78899999999999999887664 447
Q ss_pred cCCCcccEEecccCCCCCcc-ccccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeeccccccccccCCCcccccccCc
Q 045202 577 DGLQNLLDLSLNDCCIMELP-ESLGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCA 654 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~ 654 (887)
+..++|+.|+|++|++++++ ..+..+..|++|+|++|.+..+.+ .|..+++|+.|||++|.....|.+ .+..+.+++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~ 392 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLP 392 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccch
Confidence 88899999999999999976 478889999999999999998874 678899999999999987766655 444556999
Q ss_pred cceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhh
Q 045202 655 SLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLK 710 (887)
Q Consensus 655 ~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~ 710 (887)
+|+.|.+.+|+|..++...|..+..|+.|+|.+|.|..|.+.+|..+ .|..|-++
T Consensus 393 ~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 99999999999999999999999999999999999999999999998 78777653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=4.7e-31 Score=281.35 Aligned_cols=360 Identities=20% Similarity=0.241 Sum_probs=305.5
Q ss_pred CeeEEEecCCCCCCCCC----CCCCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcE
Q 045202 346 EVRYLHWHRYPLKSLPS----NIHPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAI 420 (887)
Q Consensus 346 ~Lr~L~l~~~~l~~lp~----~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 420 (887)
.-+.|++++..++.+.. .+-+..-+.|++++|++..+. ..+.++++|+.+.+..|. ++.+| .+..-..+|+.
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP--~f~~~sghl~~ 129 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIP--RFGHESGHLEK 129 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcc--cccccccceeE
Confidence 44678888888776532 245677889999999999884 789999999999999876 55554 34455677999
Q ss_pred EEecCCCCCCCCCCccC-CCCccEEEeecCCCCCCCccccc---CCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCC
Q 045202 421 LNLSGRKNLQSLPARIH-LGLLKELNLSGCSKLKRLPEISS---GNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCK 495 (887)
Q Consensus 421 L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 495 (887)
|+|.+|.+...-.+.+. ++.|++||||.| .+..+|...+ .++++|+|++|.|+.+... |..+.+|..|.|++|.
T Consensus 130 L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 99999987766555554 999999999996 5666665444 7999999999999988765 8999999999999999
Q ss_pred CCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccc
Q 045202 496 TLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITF 574 (887)
Q Consensus 496 ~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~ 574 (887)
+....+..|.+|++|+.|+|..|.+...---.|.++++|+.|.|..|.|..+-+ .|..|.++++|+|..|++.... ..
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g 287 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EG 287 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cc
Confidence 776666788889999999999988655445678999999999999999998877 6889999999999999987654 34
Q ss_pred cccCCCcccEEecccCCCCCc-cccccCCCCCcEEEcCCCCCcccc-hhhhcCCCccEeeccccccccccCCCccccccc
Q 045202 575 SVDGLQNLLDLSLNDCCIMEL-PESLGLLSSVRELHLNGNNFERIP-ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVG 652 (887)
Q Consensus 575 ~~~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~ 652 (887)
++-++++|+.|+||+|.|..+ ++.....++|++|+|+.|+|+.++ .++..|..|++|.|++|. +..+....+.+
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns----i~~l~e~af~~ 363 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS----IDHLAEGAFVG 363 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc----hHHHHhhHHHH
Confidence 577999999999999999984 577888999999999999999998 478889999999999997 66666777779
Q ss_pred CccceEecccCCCCCCCCc---chhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhhhh
Q 045202 653 CASLHGTGIIRRFIPNSSE---SDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEARE 714 (887)
Q Consensus 653 ~~~L~~L~l~~N~l~~~~~---~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~ 714 (887)
+.+|+.|+|.+|.|+.... ..|..+.+|+.|.|.+|++..|...+|.+++.|+.|+|.+|.+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 9999999999999987654 3556799999999999999999999999999999999998854
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.3e-32 Score=288.55 Aligned_cols=345 Identities=22% Similarity=0.284 Sum_probs=211.1
Q ss_pred ceeccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCccc
Q 045202 335 KVSYFQVPGF-TEVRYLHWHRYPLKSLPSNI-HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLT 412 (887)
Q Consensus 335 ~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 412 (887)
...||..... +++++|.+....+..+|... .+.+|++|.+++|++..+...+..++.|+.+++.+|+.-..-. |.-.
T Consensus 21 g~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGi-P~di 99 (1255)
T KOG0444|consen 21 GDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGI-PTDI 99 (1255)
T ss_pred CCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCC-Cchh
Confidence 3567777666 78888888888888888776 6778888888888888777777778888888777766322222 2233
Q ss_pred ccCCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCccccc---CCccEEEccCCCCCCCCcchhcCCCCcE
Q 045202 413 QHLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISS---GNIETMRLDGTAPEELPSSIECLSKLLH 488 (887)
Q Consensus 413 ~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 488 (887)
.++..|..|+|++|++ ...|..+ ..+++-+|+||+| .+..+|...+ ..|-.|+|++|.++.+|+.+..|.+|++
T Consensus 100 F~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchhhh-hhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 4566666666666663 3445544 3666666666664 4555555444 4555666666666666666666666666
Q ss_pred EecccCCCCccCCcccCCCCCCcEEEeeCCC-CCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCC
Q 045202 489 LDLVDCKTLKSLPSGLGKLKSLGILSIDGCS-NLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRG 567 (887)
Q Consensus 489 L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~-~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~ 567 (887)
|+|++|.+...--..+..+++|++|.+++.+ .+..+|..+..|.+|..+|++.|.+..+|..+.++++|+.|+|++|++
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 6666665433222223345566666666533 234566666666666666666666666666666666666666666665
Q ss_pred CcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCc--ccchhhhcCCCccEeeccccccccccCCC
Q 045202 568 LSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFE--RIPESIIQLSNLKSLFIRYCERLQFLPKL 645 (887)
Q Consensus 568 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 645 (887)
+... ...+...+|++|+||.|.++.+|+.+..++.|+.|.+.+|+++ .||+.|+.+.+|+.+..++|. +.-.
T Consensus 258 teL~--~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~----LElV 331 (1255)
T KOG0444|consen 258 TELN--MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK----LELV 331 (1255)
T ss_pred eeee--ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc----cccC
Confidence 5332 2234455666666666666666666666666666666666554 666666666666666666653 2222
Q ss_pred cccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCC
Q 045202 646 PCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDL 690 (887)
Q Consensus 646 p~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l 690 (887)
|.++ ..|..|+.|.++.|.+.. .|.....++.+..|+|.+|.-
T Consensus 332 PEgl-cRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 332 PEGL-CRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred chhh-hhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcC
Confidence 3332 256666666666666554 234444555566666665543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=4.6e-29 Score=267.19 Aligned_cols=313 Identities=24% Similarity=0.338 Sum_probs=269.6
Q ss_pred CccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCC--CCCCC-CCCCCccEEEcCCCCCccchhhhcCCccCc
Q 045202 318 NLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLK--SLPSN-IHPEKLVLLKMPHSNIEQVFDSVQHYLKLN 393 (887)
Q Consensus 318 ~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~--~lp~~-~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~ 393 (887)
+|..|.+.++. -..+-..+.. +.||.+.+..|.++ -+|.. |.++.|+.|+|++|+++.+|..+..-+++-
T Consensus 56 kLEHLs~~HN~------L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 56 KLEHLSMAHNQ------LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred hhhhhhhhhhh------hHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 45566665542 2334444555 88999999999886 57776 599999999999999999999999999999
Q ss_pred eeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCC----CCCCcccccCCccEEEc
Q 045202 394 QIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSK----LKRLPEISSGNIETMRL 468 (887)
Q Consensus 394 ~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~----l~~lp~~~~~~L~~L~L 468 (887)
+|+||+|+ .+..+..++-+++.|-+|+|++|++ ..+|..+ .+.+|++|+|++|.. +..+|.. .+|+.|.+
T Consensus 130 VLNLS~N~--IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm--tsL~vLhm 204 (1255)
T KOG0444|consen 130 VLNLSYNN--IETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM--TSLSVLHM 204 (1255)
T ss_pred EEEcccCc--cccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc--hhhhhhhc
Confidence 99999987 4445567888999999999999985 4555556 599999999999863 3344432 67899999
Q ss_pred cCCCCC--CCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCcc
Q 045202 469 DGTAPE--ELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITE 546 (887)
Q Consensus 469 ~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~ 546 (887)
++++-+ .+|.++..+.+|..+|+|.|. +..+|+.+.++++|+.|+||+|.+. .+....+...+|++|+++.|+++.
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc
Confidence 988744 899999999999999999865 7889999999999999999998754 455566777899999999999999
Q ss_pred CCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCC
Q 045202 547 VPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLS 626 (887)
Q Consensus 547 lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 626 (887)
+|+.+.++++|+.|++.+|++.-..+|+.++.+.+|+.+..++|.+.-+|+.+..+..|+.|.|+.|++.++|+.|.-++
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~ 362 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLP 362 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CccEeeccccccccccC
Q 045202 627 NLKSLFIRYCERLQFLP 643 (887)
Q Consensus 627 ~L~~L~L~~c~~l~~lp 643 (887)
.|+.|||..|+.+---|
T Consensus 363 ~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CcceeeccCCcCccCCC
Confidence 99999999999875433
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.3e-29 Score=257.75 Aligned_cols=356 Identities=22% Similarity=0.282 Sum_probs=219.2
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCC---------------
Q 045202 345 TEVRYLHWHRYPLKSLPSNI-HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPT--------------- 408 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--------------- 408 (887)
..+.+|..+.|.+..+|+.+ .+..++.++.++|++.++|+.+..+.+|+.++.++|... +.++
T Consensus 68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence 55555666666665555554 555555666666666666655555556665555555422 2211
Q ss_pred ------CcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCCcch
Q 045202 409 ------PSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELPSSI 480 (887)
Q Consensus 409 ------~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~~i 480 (887)
|..+.++.+|..|++.+|......|..++++.|+.||...| .++.+|...+ .+|+.|+|..|.|..+| +|
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef 224 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EF 224 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CC
Confidence 22233444455555555554444444444555555555543 4444544433 55666666666666666 46
Q ss_pred hcCCCCcEEecccCCCCccCCcccC-CCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCE
Q 045202 481 ECLSKLLHLDLVDCKTLKSLPSGLG-KLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRG 559 (887)
Q Consensus 481 ~~l~~L~~L~L~~~~~~~~lp~~l~-~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 559 (887)
..+..|..|.++.|. ++.+|...+ +|++|.+|++..|. +...|+.+..+.+|+.||+++|.|+.+|.+++++ .|+.
T Consensus 225 ~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF 301 (565)
T ss_pred CccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence 666666666666543 455666555 78888888888865 5678888888899999999999999999999988 8888
Q ss_pred EEccccCCCcc-----------------------------------------cccccccCCCc-----------------
Q 045202 560 IYLGRNRGLSL-----------------------------------------PITFSVDGLQN----------------- 581 (887)
Q Consensus 560 L~L~~n~~~~~-----------------------------------------~~~~~~~~l~~----------------- 581 (887)
|-+.+|.+.+. .+|. ...+.+
T Consensus 302 L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~-~~~~i~tkiL~~s~~qlt~VPdE 380 (565)
T KOG0472|consen 302 LALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD-IYAIITTKILDVSDKQLTLVPDE 380 (565)
T ss_pred hhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc-hhhhhhhhhhcccccccccCCHH
Confidence 88877765431 0000 001112
Q ss_pred ---------ccEEecccCCCCC------------------------ccccccCCCCCcEEEcCCCCCcccchhhhcCCCc
Q 045202 582 ---------LLDLSLNDCCIME------------------------LPESLGLLSSVRELHLNGNNFERIPESIIQLSNL 628 (887)
Q Consensus 582 ---------L~~L~Ls~n~l~~------------------------lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 628 (887)
....+++.|++.+ +|..++.+++|..|+|++|-+..+|..++.+-.|
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~L 460 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRL 460 (565)
T ss_pred HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhh
Confidence 2233344444333 3334456677777777777777777777777777
Q ss_pred cEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHh
Q 045202 629 KSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATAR 708 (887)
Q Consensus 629 ~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~ 708 (887)
+.|+|++|+ ++.+|..+. ...-|+++..+.|++..+.++....+..|..|||.+|.+..|.| .++++++|++|+
T Consensus 461 q~LnlS~Nr----Fr~lP~~~y-~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp-~LgnmtnL~hLe 534 (565)
T KOG0472|consen 461 QTLNLSFNR----FRMLPECLY-ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP-ILGNMTNLRHLE 534 (565)
T ss_pred heecccccc----cccchHHHh-hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh-hhccccceeEEE
Confidence 777777774 444443221 22345666666677777777777777777778887777776644 677777777777
Q ss_pred hhhhh
Q 045202 709 LKEAR 713 (887)
Q Consensus 709 l~~n~ 713 (887)
+.+|.
T Consensus 535 L~gNp 539 (565)
T KOG0472|consen 535 LDGNP 539 (565)
T ss_pred ecCCc
Confidence 77773
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.6e-28 Score=251.63 Aligned_cols=344 Identities=23% Similarity=0.303 Sum_probs=281.0
Q ss_pred ceeccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCccc
Q 045202 335 KVSYFQVPGF-TEVRYLHWHRYPLKSLPSNI-HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLT 412 (887)
Q Consensus 335 ~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 412 (887)
...+|+.++. .+++.|+++.|.+..+|+.+ .+..+..++..+|++..+|.++..+.+|..+++.+|+ +...++ +..
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~-~~i 180 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPE-NHI 180 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCH-HHH
Confidence 4567888877 89999999999999999887 7889999999999999999999999999999999987 334433 333
Q ss_pred ccCCCCcEEEecCCCCCCCCCCccC-CCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchh-cCCCCcEE
Q 045202 413 QHLNKLAILNLSGRKNLQSLPARIH-LGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIE-CLSKLLHL 489 (887)
Q Consensus 413 ~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L 489 (887)
.++.|++||...|. ++.+|..++ +.+|..|+|..| .+..+|++.+ ..|.+|+++.|.|+-+|.... ++++|.+|
T Consensus 181 -~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 -AMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred -HHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceee
Confidence 39999999998876 566777774 999999999995 6788897777 899999999999999999865 89999999
Q ss_pred ecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCcc-------------------
Q 045202 490 DLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPS------------------- 550 (887)
Q Consensus 490 ~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~------------------- 550 (887)
||++|+ +.+.|+.++.|.+|++|++|+|. +..+|..+++| .|+.|-+.||.+..+-.+
T Consensus 258 DLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 258 DLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred eccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 999987 78899999999999999999976 45688999999 899999988864321110
Q ss_pred -----------------------ccCCCCCCEEEccccCCCcc-------------------------------------
Q 045202 551 -----------------------IVRLKRVRGIYLGRNRGLSL------------------------------------- 570 (887)
Q Consensus 551 -----------------------l~~l~~L~~L~L~~n~~~~~------------------------------------- 570 (887)
...+.+.+.|+++.-+++..
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelv 414 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELV 414 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHH
Confidence 11223444444443333221
Q ss_pred -----------cccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccc
Q 045202 571 -----------PITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERL 639 (887)
Q Consensus 571 -----------~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 639 (887)
-.|..++.+++|..|+|++|-+.++|..++.+..|+.|+++.|+|..+|..+..+..|+.+-.++|+
T Consensus 415 T~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-- 492 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-- 492 (565)
T ss_pred HHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc--
Confidence 1233356789999999999999999999999999999999999999999998888888888777775
Q ss_pred cccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCC
Q 045202 640 QFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLG 691 (887)
Q Consensus 640 ~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~ 691 (887)
+..++++=..++.+|.+|++.+|.+..+ |.....+.+++.|.|++|.+.
T Consensus 493 --i~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 493 --IGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred --ccccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 5555555223889999999999999985 556788999999999999998
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.2e-23 Score=259.98 Aligned_cols=310 Identities=28% Similarity=0.342 Sum_probs=261.3
Q ss_pred CCccEEEeeccccccCccceeccCCCCCCCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCC-CccchhhhcCCccCce
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGFTEVRYLHWHRYPLKSLPSNI-HPEKLVLLKMPHSN-IEQVFDSVQHYLKLNQ 394 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~-i~~l~~~~~~l~~L~~ 394 (887)
.+||.|.+..+ ....+|..+...+|+.|++.++.++.+|..+ .+++|+.|+|+++. +..+| .+..+++|+.
T Consensus 589 ~~Lr~L~~~~~------~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~ 661 (1153)
T PLN03210 589 PKLRLLRWDKY------PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLET 661 (1153)
T ss_pred cccEEEEecCC------CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccE
Confidence 57889988765 3356788777799999999999999999877 79999999999865 66665 4778999999
Q ss_pred eecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCC
Q 045202 395 IITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPE 474 (887)
Q Consensus 395 L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~ 474 (887)
|++++|..+..+| ..+.++++|+.|++++|..++.+|..+++++|+.|+|++|..+..+|... .+|++|+|++|.+.
T Consensus 662 L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~-~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 662 LKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS-TNISWLDLDETAIE 738 (1153)
T ss_pred EEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc-CCcCeeecCCCccc
Confidence 9999999887765 45789999999999999999999998899999999999999998888653 68999999999999
Q ss_pred CCCcchhcCCCCcEEecccCCCCc-------cCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc-cCcc
Q 045202 475 ELPSSIECLSKLLHLDLVDCKTLK-------SLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT-AITE 546 (887)
Q Consensus 475 ~lp~~i~~l~~L~~L~L~~~~~~~-------~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n-~i~~ 546 (887)
.+|..+ .+++|+.|++.++.... ..|......++|+.|++++|.....+|..++++++|+.|++++| .+..
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 999876 68899999998754211 11122334579999999999999999999999999999999986 5678
Q ss_pred CCccccCCCCCCEEEccccC-CCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCC-CCCcccchhhhc
Q 045202 547 VPPSIVRLKRVRGIYLGRNR-GLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNG-NNFERIPESIIQ 624 (887)
Q Consensus 547 lp~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~-n~l~~lp~~l~~ 624 (887)
+|..+ .+++|+.|+++++. +.. +|. ..++|+.|+|++|.++++|.++..+++|+.|+|++ ++++.+|..+..
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~--~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRT--FPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred eCCCC-CccccCEEECCCCCcccc--ccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc
Confidence 88776 79999999996654 332 232 24689999999999999999999999999999999 478899999999
Q ss_pred CCCccEeeccccccccccC
Q 045202 625 LSNLKSLFIRYCERLQFLP 643 (887)
Q Consensus 625 l~~L~~L~L~~c~~l~~lp 643 (887)
+++|+.|++++|..+..++
T Consensus 892 L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 892 LKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccCCCeeecCCCccccccc
Confidence 9999999999998887553
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=1.5e-25 Score=252.25 Aligned_cols=378 Identities=18% Similarity=0.201 Sum_probs=244.0
Q ss_pred CccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCCccchhhhcCCccCcee
Q 045202 318 NLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPSNI-HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQI 395 (887)
Q Consensus 318 ~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L 395 (887)
+|+.|+++++ ....+|..+.. .+|+.|.++.|-+.++|... .+.+|+++.|.+|.+..+|.++..+.+|+.|
T Consensus 46 ~L~~l~lsnn------~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNN------QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eeEEeecccc------ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 3777888765 34567777766 88888888888888888665 7888888888888888888888888888888
Q ss_pred ecCcCcCCCCCCCC----------c----------------------------ccccCCCCcE-EEecCCCCCCC----C
Q 045202 396 ITAAFNFFSKTPTP----------S----------------------------LTQHLNKLAI-LNLSGRKNLQS----L 432 (887)
Q Consensus 396 ~l~~~~~l~~~~~~----------~----------------------------~~~~l~~L~~-L~L~~~~~~~~----l 432 (887)
+++.|.+. .+|.. . +......|++ |+|++|.+... .
T Consensus 120 dlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~ 198 (1081)
T KOG0618|consen 120 DLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNL 198 (1081)
T ss_pred ccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhc
Confidence 88887643 22220 0 0011122222 45555443300 0
Q ss_pred CC------------c--cCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCc
Q 045202 433 PA------------R--IHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLK 498 (887)
Q Consensus 433 p~------------~--~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 498 (887)
+. . +.-++|+.|..+.|......+.....+|++++++.|.+..+|++++.+.+|+.|+..+|.+ .
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~ 277 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-V 277 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-H
Confidence 00 0 0123444555555544433333334788888888888888888888888888888888775 6
Q ss_pred cCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccC-------------------------
Q 045202 499 SLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVR------------------------- 553 (887)
Q Consensus 499 ~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~------------------------- 553 (887)
.+|..+....+|+.|.+..|. +..+|...+.+++|++|+|..|.+..+|+.+..
T Consensus 278 ~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~ 356 (1081)
T KOG0618|consen 278 ALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN 356 (1081)
T ss_pred hhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence 777777788888888887764 556777777788888888888888877763211
Q ss_pred -CCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCcccchhhhcCCCccEe
Q 045202 554 -LKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFERIPESIIQLSNLKSL 631 (887)
Q Consensus 554 -l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 631 (887)
.+.|+.|++.+|.+..--+|. +.++.+|+.|+|++|++.++|+ .+..++.|+.|+||||+++.||..+..++.|++|
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL 435 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH
Confidence 123344444455544433333 5666777777777777777774 3556777777777777777777777777777777
Q ss_pred eccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhh
Q 045202 632 FIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKE 711 (887)
Q Consensus 632 ~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~ 711 (887)
...+|. +...|++ +..++|+.++++.|.++...-..-..-+.|+.|||++|.........|..++.++..++.-
T Consensus 436 ~ahsN~-l~~fPe~-----~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~ 509 (1081)
T KOG0618|consen 436 RAHSNQ-LLSFPEL-----AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL 509 (1081)
T ss_pred hhcCCc-eeechhh-----hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence 776664 2233322 2567777777777777754333322236777777777776665555555555555555433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=9.2e-23 Score=229.94 Aligned_cols=353 Identities=20% Similarity=0.189 Sum_probs=234.9
Q ss_pred CCeeEEEecCCCCCCCCCCC-CCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEe
Q 045202 345 TEVRYLHWHRYPLKSLPSNI-HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNL 423 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L 423 (887)
-+|+.|++++|.+.+.|..+ .+.+|+.|+++.|.|..+|....++.+|+++.|..|.. .. .|..+..+++|++|++
T Consensus 45 v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l-~~--lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 45 VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL-QS--LPASISELKNLQYLDL 121 (1081)
T ss_pred eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh-hc--CchhHHhhhccccccc
Confidence 45999999999999999987 78999999999999999999999999999999998762 22 3556788999999999
Q ss_pred cCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCC-CCCcchhcCCCCcEEecccCCCCc---
Q 045202 424 SGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPE-ELPSSIECLSKLLHLDLVDCKTLK--- 498 (887)
Q Consensus 424 ~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~--- 498 (887)
++|.+. .+|..+ .++.+..++.++|..+..++... ++.+++..|.+. .++..+..+.+ .|+|+.|.+..
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~---ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS---IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL 195 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc---chhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh
Confidence 999865 445545 47777778888774443333322 334444433332 23333333333 34444333220
Q ss_pred -------c-------CCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccc
Q 045202 499 -------S-------LPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGR 564 (887)
Q Consensus 499 -------~-------lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 564 (887)
. +..-...-++|+.|+.+.|.+....+. ..-.+|+++++++|.++.+|+++..+.+|+.|..+.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccc
Confidence 0 000011234566666666665533222 123467777777777777777777777777777777
Q ss_pred cCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhc--------------------
Q 045202 565 NRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQ-------------------- 624 (887)
Q Consensus 565 n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~-------------------- 624 (887)
|++. .+|..+...++|+.|.+.+|.+..+|+....+.+|++|+|..|+|..+|..+..
T Consensus 274 N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 274 NRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred hhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 7663 445556666667777777777666666666667777777777766666653321
Q ss_pred ------CCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHH
Q 045202 625 ------LSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGAL 698 (887)
Q Consensus 625 ------l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~ 698 (887)
++.|+.|.+.+|......- | +..+...|+.|++++|++..++...+..+..|+.|+||+|.++.+. ...
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~--p--~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tv 426 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCF--P--VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTV 426 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccch--h--hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHH
Confidence 2334444444443221110 0 0126788999999999999888888888999999999999998885 788
Q ss_pred HHhHHHHHHhhhhhhhc
Q 045202 699 QKIQLLATARLKEAREK 715 (887)
Q Consensus 699 ~~l~~L~~l~l~~n~~~ 715 (887)
.++..|++|..++|.+.
T Consensus 427 a~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred HhhhhhHHHhhcCCcee
Confidence 88899999988888654
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4e-19 Score=207.91 Aligned_cols=263 Identities=24% Similarity=0.293 Sum_probs=143.9
Q ss_pred eeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCC
Q 045202 347 VRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGR 426 (887)
Q Consensus 347 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 426 (887)
-..|+++++.++++|..+ +.+|+.|++.+|+++.+|.. . ++|++|+|++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l---p--------------------------~~Lk~LdLs~N 252 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL---P--------------------------PELRTLEVSGN 252 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC---C--------------------------CCCcEEEecCC
Confidence 456788888888888766 34778888888877766531 2 34555555555
Q ss_pred CCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCC
Q 045202 427 KNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGK 506 (887)
Q Consensus 427 ~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~ 506 (887)
.+. .+|.. .++|+.|+|++|. +..+|... .+|+.|++++|.++.+|.. +++|+.|+|++|.+. .+|..
T Consensus 253 ~Lt-sLP~l--p~sL~~L~Ls~N~-L~~Lp~lp-~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~l--- 320 (788)
T PRK15387 253 QLT-SLPVL--PPGLLELSIFSNP-LTHLPALP-SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPAL--- 320 (788)
T ss_pred ccC-cccCc--ccccceeeccCCc-hhhhhhch-hhcCEEECcCCcccccccc---ccccceeECCCCccc-cCCCC---
Confidence 433 33432 3567777777753 44555422 4677777777777777652 356777777776543 34431
Q ss_pred CCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEe
Q 045202 507 LKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLS 586 (887)
Q Consensus 507 L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 586 (887)
..+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|.. ..+|+ .|+
T Consensus 321 p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~-------------------------~L~ 368 (788)
T PRK15387 321 PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLASLPTL---PSELY-------------------------KLW 368 (788)
T ss_pred cccccccccccCccc-ccccc---ccccceEecCCCccCCCCCC---Ccccc-------------------------eeh
Confidence 234555666665543 24431 13455666666666555542 23344 444
Q ss_pred cccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCC
Q 045202 587 LNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFI 666 (887)
Q Consensus 587 Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l 666 (887)
+++|.+..+|.. +++|+.|++++|+|+.+|.. .++|+.|++++|+ +..+|.+| .+|+.|++++|+|
T Consensus 369 Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~-------~~L~~L~Ls~NqL 434 (788)
T PRK15387 369 AYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLPMLP-------SGLLSLSVYRNQL 434 (788)
T ss_pred hhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCCcch-------hhhhhhhhccCcc
Confidence 444444444432 23455555555555555532 2345555555553 22333322 2344555555665
Q ss_pred CCCCcchhhhhcccCcccCCCCCCCcchhHHH
Q 045202 667 PNSSESDFLDLYLSDNFKLDPNDLGGIFKGAL 698 (887)
Q Consensus 667 ~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~ 698 (887)
+.+ |..+..+..+..++|++|.+++..+..+
T Consensus 435 t~L-P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 435 TRL-PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ccc-ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 543 3345555566666666666666555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.5e-19 Score=207.50 Aligned_cols=257 Identities=22% Similarity=0.216 Sum_probs=147.5
Q ss_pred CccEEEeeccccccCccceeccCCCCCCCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeec
Q 045202 318 NLRILKFYRSMNEENKCKVSYFQVPGFTEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIIT 397 (887)
Q Consensus 318 ~Lr~L~l~~~~~~~~~~~~~~p~~~~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l 397 (887)
+-..|++..+. -..+|..+. .+++.|.+.+|.++.+|.. +++|++|+|++|+++.+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~------LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESG------LTTLPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCC------CCcCCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeec
Confidence 44567776643 134666554 5799999999999999974 68999999999999998753 467888888
Q ss_pred CcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCC
Q 045202 398 AAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELP 477 (887)
Q Consensus 398 ~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp 477 (887)
++|. +..++. ...+|+.|++++|.+. .+|.. +++|+.|+|++| .+..+|.. ..+|+.|++++|.++.+|
T Consensus 270 s~N~-L~~Lp~-----lp~~L~~L~Ls~N~Lt-~LP~~--p~~L~~LdLS~N-~L~~Lp~l-p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 270 FSNP-LTHLPA-----LPSGLCKLWIFGNQLT-SLPVL--PPGLQELSVSDN-QLASLPAL-PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred cCCc-hhhhhh-----chhhcCEEECcCCccc-ccccc--ccccceeECCCC-ccccCCCC-cccccccccccCcccccc
Confidence 8775 333332 2356777777777644 34432 456677777665 33444432 134555555555555555
Q ss_pred cchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCC
Q 045202 478 SSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRV 557 (887)
Q Consensus 478 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 557 (887)
.. ..+|+.|+|++|.+. .+|.. ..+|+.| ++++|.+..+|.. ..+|
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L------------------------~Ls~N~L~~LP~l---~~~L 384 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLA-SLPTL---PSELYKL------------------------WAYNNRLTSLPAL---PSGL 384 (788)
T ss_pred cc---ccccceEecCCCccC-CCCCC---Cccccee------------------------hhhccccccCccc---cccc
Confidence 31 134555555554432 23331 1234444 4444444444432 1344
Q ss_pred CEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccc
Q 045202 558 RGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 558 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 637 (887)
+.|++++|.+.. +|.. .++|+.|++++|.++.+|.. +.+|+.|++++|+|+.+|..+.++++|+.|+|++|+
T Consensus 385 ~~LdLs~N~Lt~--LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 385 KELIVSGNRLTS--LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ceEEecCCcccC--CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 455555554442 1211 23455566666665555542 234555666666666666666666666666666665
Q ss_pred cc
Q 045202 638 RL 639 (887)
Q Consensus 638 ~l 639 (887)
..
T Consensus 457 Ls 458 (788)
T PRK15387 457 LS 458 (788)
T ss_pred CC
Confidence 43
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4e-19 Score=209.43 Aligned_cols=250 Identities=22% Similarity=0.297 Sum_probs=127.8
Q ss_pred CeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecC
Q 045202 346 EVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSG 425 (887)
Q Consensus 346 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 425 (887)
+...|+++++.++++|..+ +++|+.|+|++|+++.+|..+. .+|+.|++++|+ +.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-Lt--------------------- 233 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LT--------------------- 233 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cc---------------------
Confidence 3456777777888887755 4577888888887777765432 345555555433 11
Q ss_pred CCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccC
Q 045202 426 RKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLG 505 (887)
Q Consensus 426 ~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~ 505 (887)
.+|..+ ..+|+.|+|++| .+..+|..+. .+|+.|++++|.+. .+|..+.
T Consensus 234 -----sLP~~l-~~~L~~L~Ls~N----------------------~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~ 282 (754)
T PRK15370 234 -----SIPATL-PDTIQEMELSIN----------------------RITELPERLP--SALQSLDLFHNKIS-CLPENLP 282 (754)
T ss_pred -----cCChhh-hccccEEECcCC----------------------ccCcCChhHh--CCCCEEECcCCccC-ccccccC
Confidence 222211 123455555554 3334443332 24555555544322 3444332
Q ss_pred CCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEE
Q 045202 506 KLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDL 585 (887)
Q Consensus 506 ~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 585 (887)
++|+.|++++|++. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+.. +|..+ .++|+.|
T Consensus 283 --~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L 351 (754)
T PRK15370 283 --EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTS--LPASL--PPELQVL 351 (754)
T ss_pred --CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcccc--CChhh--cCcccEE
Confidence 34555555554433 2333222 245566666666665554332 455555555555443 22222 2456666
Q ss_pred ecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCC
Q 045202 586 SLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRF 665 (887)
Q Consensus 586 ~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~ 665 (887)
++++|+++.+|..+ .++|+.|+|++|+++.+|..+. ..|+.|++++|+ +..+|...+++...++++..+++.+|.
T Consensus 352 ~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 352 DVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 66666666665544 2466666666666666665543 246666666664 223333222222244555555555555
Q ss_pred CC
Q 045202 666 IP 667 (887)
Q Consensus 666 l~ 667 (887)
++
T Consensus 427 ls 428 (754)
T PRK15370 427 FS 428 (754)
T ss_pred cc
Confidence 44
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.8e-18 Score=204.07 Aligned_cols=248 Identities=23% Similarity=0.266 Sum_probs=194.4
Q ss_pred CCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCC
Q 045202 416 NKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCK 495 (887)
Q Consensus 416 ~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 495 (887)
.+...|+++++.+. .+|..+ .++|+.|+|++| .+..+|.....+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI-PEQITTLILDNN-ELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc-ccCCcEEEecCC-CCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 34567888877644 466543 357899999886 5667887666899999999999999998764 489999999988
Q ss_pred CCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCccccccc
Q 045202 496 TLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFS 575 (887)
Q Consensus 496 ~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~ 575 (887)
+. .+|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+... |..
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L--P~~ 322 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTAL--PET 322 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccC--Ccc
Confidence 55 7787664 58999999988765 5787664 589999999999999987653 5799999999988753 332
Q ss_pred ccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCcc
Q 045202 576 VDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCAS 655 (887)
Q Consensus 576 ~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~ 655 (887)
+ .++|+.|++++|.++.+|..+. ++|+.|++++|+|+.+|..+ .++|+.|+|++|. +..+|+.+. .+
T Consensus 323 l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~----Lt~LP~~l~---~s 389 (754)
T PRK15370 323 L--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNA----LTNLPENLP---AA 389 (754)
T ss_pred c--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCc----CCCCCHhHH---HH
Confidence 2 3689999999999999997664 79999999999999999766 3799999999996 334444442 47
Q ss_pred ceEecccCCCCCCCCcchh---hhhcccCcccCCCCCCC
Q 045202 656 LHGTGIIRRFIPNSSESDF---LDLYLSDNFKLDPNDLG 691 (887)
Q Consensus 656 L~~L~l~~N~l~~~~~~~~---~~l~~l~~l~L~~N~l~ 691 (887)
|+.|++++|+++.++.... ...+.+..++|.+|.++
T Consensus 390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8999999999997644322 22466778999999987
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-19 Score=186.59 Aligned_cols=354 Identities=18% Similarity=0.190 Sum_probs=230.0
Q ss_pred EEEecCCCCCCCCCCCCCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCC
Q 045202 349 YLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRK 427 (887)
Q Consensus 349 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~ 427 (887)
..+.++-.++.+|... +++-+.++|..|+|+.+| ..|+.+++|+.|||++|+ .+...|..|..+++|..|-+.++.
T Consensus 50 ~VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccc--hhhcChHhhhhhHhhhHHHhhcCC
Confidence 4566777788888776 667788888888888887 567888888888888876 344556777888888888777755
Q ss_pred CCCCCCCcc--CCCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCC-----
Q 045202 428 NLQSLPARI--HLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTL----- 497 (887)
Q Consensus 428 ~~~~lp~~~--~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~----- 497 (887)
.+..+|... ++.+|+.|.+.-|..--.....+. +++..|.+..|.+..++. ++..+..++.+.+..|...
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 566666554 388888887776543322223332 677788888888888887 5888888888888776621
Q ss_pred -------ccCCcccCCCCCCcEE-------------------------EeeCCCCCCCCc-hhhcCCCCCceeeccCccC
Q 045202 498 -------KSLPSGLGKLKSLGIL-------------------------SIDGCSNLQRLP-EELGNLQALDSLHAVGTAI 544 (887)
Q Consensus 498 -------~~lp~~l~~L~~L~~L-------------------------~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~i 544 (887)
...|..++......-. ..+.|......| ..|+.+++|++|+|++|+|
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 2223222222211111 112233333444 3488999999999999999
Q ss_pred ccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCc------
Q 045202 545 TEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFE------ 616 (887)
Q Consensus 545 ~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~------ 616 (887)
+.+-+ +|..+..++.|.|..|++..+. ...|.++..|+.|+|.+|+|+. .|..|..+.+|.+|+|-.|.+-
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 97755 8899999999999999876544 3347889999999999999998 6778889999999999888654
Q ss_pred ccchhhhc-----------CCCccEeeccccccccc---cCC----Cccccc-ccCccc---------------------
Q 045202 617 RIPESIIQ-----------LSNLKSLFIRYCERLQF---LPK----LPCNLL-VGCASL--------------------- 656 (887)
Q Consensus 617 ~lp~~l~~-----------l~~L~~L~L~~c~~l~~---lp~----lp~~l~-~~~~~L--------------------- 656 (887)
-+-+|+.+ -..++.+.+++...-.. -|+ .+++.- ..|+-+
T Consensus 366 wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d 445 (498)
T KOG4237|consen 366 WLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVD 445 (498)
T ss_pred HHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCch
Confidence 12233321 23455666655421110 000 000000 012222
Q ss_pred -eEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhh
Q 045202 657 -HGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLK 710 (887)
Q Consensus 657 -~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~ 710 (887)
.++++.+|.++.++... +..+ .++|++|+++.+....|.++.+|+++-|+
T Consensus 446 ~telyl~gn~~~~vp~~~---~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlils 496 (498)
T KOG4237|consen 446 VTELYLDGNAITSVPDEL---LRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILS 496 (498)
T ss_pred hHHHhcccchhcccCHHH---Hhhh-hcccccCceehhhcccccchhhhheeEEe
Confidence 34556666666655542 3334 56777777777766667777666665443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=6.2e-19 Score=161.36 Aligned_cols=152 Identities=26% Similarity=0.370 Sum_probs=95.5
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
.++..|-|++|.++.+|+.+..+.+|+.|++++|. +..+|.+++.|++|+.|+++-|. +..+|..|+.++.|+.|||+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhcc
Confidence 45556666666666777777777777777777654 55666666667777766666543 34556666666666666666
Q ss_pred CccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch
Q 045202 541 GTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 541 ~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
+|.+. .-.+|..|-.+..|+.|.|++|.+.-+|..++.+++|+.|.+..|.+-++|.
T Consensus 111 ynnl~-----------------------e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 111 YNNLN-----------------------ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred ccccc-----------------------cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 66554 2233433444455555555555555566666666666666666666666666
Q ss_pred hhhcCCCccEeeccccc
Q 045202 621 SIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 621 ~l~~l~~L~~L~L~~c~ 637 (887)
.++.+..|++|.+.+|+
T Consensus 168 eig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHHHHhcccce
Confidence 66666677777776664
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.65 E-value=2e-18 Score=177.90 Aligned_cols=258 Identities=21% Similarity=0.229 Sum_probs=194.5
Q ss_pred CCCCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCc-hh
Q 045202 450 SKLKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLP-EE 527 (887)
Q Consensus 450 ~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p-~~ 527 (887)
..+..+|.-.......++|..|.|+.||+. |+.+++|+.|||++|.+...-|..|.+|++|..|.+.+++.+..+| ..
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 466777777778889999999999999987 8999999999999999988999999999999999988866666666 45
Q ss_pred hcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC------------
Q 045202 528 LGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME------------ 594 (887)
Q Consensus 528 l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------------ 594 (887)
|++|..|+.|.+.-|++..++. .+..+++|..|.+..|.+.... ...+..+.+++.+.+..|.+..
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~-~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSIC-KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhc-cccccchhccchHhhhcCccccccccchhhhHHh
Confidence 8999999999999999987665 7888999999999888766432 1246777888888877665211
Q ss_pred -ccccccCCCCCcEEEcC--------------------------CCCCcccc-hhhhcCCCccEeeccccccccccCCCc
Q 045202 595 -LPESLGLLSSVRELHLN--------------------------GNNFERIP-ESIIQLSNLKSLFIRYCERLQFLPKLP 646 (887)
Q Consensus 595 -lp~~~~~l~~L~~L~L~--------------------------~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~lp 646 (887)
.|..+++.....-..+. .+.....| ..|..+++|+.|+|++|+ |..+-
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~----i~~i~ 290 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK----ITRIE 290 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc----cchhh
Confidence 22222222222111111 11222344 357788888888888886 55566
Q ss_pred ccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhh
Q 045202 647 CNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEA 712 (887)
Q Consensus 647 ~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n 712 (887)
...|.+..+++.|.+..|+|..+....|..+..|+.|+|.+|+|+.+.|.+|+.+..|++++|-.|
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccC
Confidence 666677888888888888888888888888888888888888888888888888888888887666
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=2.2e-16 Score=173.12 Aligned_cols=190 Identities=20% Similarity=0.176 Sum_probs=92.3
Q ss_pred cCCCCCCcEEEeeCCCCCCCCchhhcCCCC---CceeeccCccCcc-----CCccccCC-CCCCEEEccccCCCcc---c
Q 045202 504 LGKLKSLGILSIDGCSNLQRLPEELGNLQA---LDSLHAVGTAITE-----VPPSIVRL-KRVRGIYLGRNRGLSL---P 571 (887)
Q Consensus 504 l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~---L~~L~L~~n~i~~-----lp~~l~~l-~~L~~L~L~~n~~~~~---~ 571 (887)
+..+++|+.|++++|.+....+..+..+.. |++|++++|.+.. +...+..+ ++|+.|++++|.+... .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 334445555555554444333333333333 5555555554441 12233344 5555555555554421 1
Q ss_pred ccccccCCCcccEEecccCCCCC-----ccccccCCCCCcEEEcCCCCCc-----ccchhhhcCCCccEeecccccccc-
Q 045202 572 ITFSVDGLQNLLDLSLNDCCIME-----LPESLGLLSSVRELHLNGNNFE-----RIPESIIQLSNLKSLFIRYCERLQ- 640 (887)
Q Consensus 572 ~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~l~- 640 (887)
++..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|.++ .++..+..+++|++|++++|+...
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 22234445566666666666652 3333444556666666666654 233344556666666666664221
Q ss_pred ccCCCcccccccCccceEecccCCCCCCCCcc----hhhhhcccCcccCCCCCCCcc
Q 045202 641 FLPKLPCNLLVGCASLHGTGIIRRFIPNSSES----DFLDLYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 641 ~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~----~~~~l~~l~~l~L~~N~l~~i 693 (887)
.+..+...+..+.+.|+.|++++|.++..... .+.....++.+++++|.++.-
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 01111111111235677777777766532221 222345667777777777654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=5.9e-17 Score=148.46 Aligned_cols=187 Identities=22% Similarity=0.268 Sum_probs=154.3
Q ss_pred cCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCccc
Q 045202 504 LGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLL 583 (887)
Q Consensus 504 l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 583 (887)
+.++.....|.+|+|. +..+|..+..+.+|+.|++++|+|.++|.+++.+++|+.|+++-|++. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhh
Confidence 3356677777888865 456677788999999999999999999999999999999999999876 5788999999999
Q ss_pred EEecccCCCCC--ccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecc
Q 045202 584 DLSLNDCCIME--LPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGI 661 (887)
Q Consensus 584 ~L~Ls~n~l~~--lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l 661 (887)
.|||++|++.+ +|..|..++.|+.|+|+.|.++.+|..++++++|+.|.+.+|..+ ++|..+. .++.|++|++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll----~lpkeig-~lt~lrelhi 180 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL----SLPKEIG-DLTRLRELHI 180 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh----hCcHHHH-HHHHHHHHhc
Confidence 99999999997 999999999999999999999999999999999999999999633 4444332 6689999999
Q ss_pred cCCCCCCCCcchhh--hhcccCcccCCCCCCCcchhHHH
Q 045202 662 IRRFIPNSSESDFL--DLYLSDNFKLDPNDLGGIFKGAL 698 (887)
Q Consensus 662 ~~N~l~~~~~~~~~--~l~~l~~l~L~~N~l~~i~~~~~ 698 (887)
.+|.++-++|..-. -...-+.+.+.+|.+..-+...|
T Consensus 181 qgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 181 QGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred ccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 99999987775431 12334467788888766554433
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=1e-15 Score=167.84 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=39.1
Q ss_pred hhcC-CCCcEEecccCCCCc----cCCcccCCCCCCcEEEeeCCCCCC----CCchhhcCCCCCceeeccCccCcc----
Q 045202 480 IECL-SKLLHLDLVDCKTLK----SLPSGLGKLKSLGILSIDGCSNLQ----RLPEELGNLQALDSLHAVGTAITE---- 546 (887)
Q Consensus 480 i~~l-~~L~~L~L~~~~~~~----~lp~~l~~L~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~~---- 546 (887)
+..+ ++|+.|++++|.+.+ .++..+..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3344 555555555555442 122234444555555555554432 122233334455555555555431
Q ss_pred -CCccccCCCCCCEEEccccCC
Q 045202 547 -VPPSIVRLKRVRGIYLGRNRG 567 (887)
Q Consensus 547 -lp~~l~~l~~L~~L~L~~n~~ 567 (887)
++..+..+++|+.|++++|.+
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcC
Confidence 222333444455555544443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=2.2e-14 Score=154.83 Aligned_cols=182 Identities=22% Similarity=0.326 Sum_probs=135.4
Q ss_pred CCCCCCccccc----CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCc
Q 045202 450 SKLKRLPEISS----GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLP 525 (887)
Q Consensus 450 ~~l~~lp~~~~----~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p 525 (887)
..++.+|.... .-....+|+.|++.++|..+..+..|+.|.|..|. ...+|..+++|..|.+|+|+.|+ +..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCC
Confidence 34445544333 33345677777778888877777788888887765 56777778888888888888765 44567
Q ss_pred hhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCC
Q 045202 526 EELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSV 605 (887)
Q Consensus 526 ~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L 605 (887)
..+..|+ |+.|-+++|+++.+|..++.+..|..|+.++|.+. .+|..++++.+|+.|.+..|++..+|+.+..|+ |
T Consensus 138 ~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-L 213 (722)
T KOG0532|consen 138 DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-L 213 (722)
T ss_pred hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-e
Confidence 6666665 78888888888888888887788888888877766 456667788888888888888888887777554 7
Q ss_pred cEEEcCCCCCcccchhhhcCCCccEeeccccc
Q 045202 606 RELHLNGNNFERIPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 606 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 637 (887)
..||++.|++..||..|..|..|++|.|.+|+
T Consensus 214 i~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 88888888888888888888888888888876
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=3.8e-11 Score=144.52 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=112.8
Q ss_pred CceEeeCCchhhHHHHHHHHHhhhcccCcCCeEeecchh-HHHHHHhcCCCCCccEEEeeccccccCccceeccCCCCCC
Q 045202 267 YLNFFVHFATHMFHAMGREVVRQESINDLGRRSRIWHHK-EIYKILSENRTPNLRILKFYRSMNEENKCKVSYFQVPGFT 345 (887)
Q Consensus 267 ~~~i~mh~a~~ll~~~~~~iv~~~~~~~~~~~s~l~~~~-~i~~~l~~~~~~~Lr~L~l~~~~~~~~~~~~~~p~~~~~~ 345 (887)
...+.|| |++++||..+..+....+-. .+..+. ...+.-........|...+.++ ...+.+.....+
T Consensus 478 ~~~~kmH---DvvRe~al~ias~~~~~~e~---~iv~~~~~~~~~~~~~~~~~~rr~s~~~~------~~~~~~~~~~~~ 545 (889)
T KOG4658|consen 478 KETVKMH---DVVREMALWIASDFGKQEEN---QIVSDGVGLSEIPQVKSWNSVRRMSLMNN------KIEHIAGSSENP 545 (889)
T ss_pred eeEEEee---HHHHHHHHHHhccccccccc---eEEECCcCccccccccchhheeEEEEecc------chhhccCCCCCC
Confidence 4789999 99999999998843321111 111110 1111001111135566666554 234555566667
Q ss_pred CeeEEEecCCC--CCCCCCCC--CCCCccEEEcCCC-CCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcE
Q 045202 346 EVRYLHWHRYP--LKSLPSNI--HPEKLVLLKMPHS-NIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAI 420 (887)
Q Consensus 346 ~Lr~L~l~~~~--l~~lp~~~--~~~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 420 (887)
+|+.|-+.++. +..++..| .++.|+.|||++| .+.++|..++.+-+||.|++++.. +..+ |..+++++.|.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~L--P~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHL--PSGLGNLKKLIY 622 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-cccc--chHHHHHHhhhe
Confidence 89999999986 77777764 6889999999854 567888888889999988888865 2222 456678888888
Q ss_pred EEecCCCCCCCCCCccC-CCCccEEEeecC
Q 045202 421 LNLSGRKNLQSLPARIH-LGLLKELNLSGC 449 (887)
Q Consensus 421 L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~ 449 (887)
|++..+.....+|.... +++|++|.+..-
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 88888877777766665 888888888764
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=2.3e-11 Score=137.34 Aligned_cols=193 Identities=31% Similarity=0.425 Sum_probs=126.4
Q ss_pred EEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCC-CCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCC
Q 045202 443 ELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLS-KLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSN 520 (887)
Q Consensus 443 ~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~ 520 (887)
.|++..+........... ..++.|++.+|.+.++|+....+. +|+.|++++|. +..+|..+..+++|+.|+++.|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchh
Confidence 455555443233333333 467777777777777777776664 77777777765 445555566777777777777654
Q ss_pred CCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcccccc
Q 045202 521 LQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLG 600 (887)
Q Consensus 521 ~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~ 600 (887)
. .+|...+.+++|+.|++++|.+..+|..+..+..|+.|.++.|... ..+..+..+.++..|.+.+|.+..++..++
T Consensus 176 ~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 176 S-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred h-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce--ecchhhhhcccccccccCCceeeeccchhc
Confidence 3 4455455677777777777777777776666666777777766422 334446666677777777777766667777
Q ss_pred CCCCCcEEEcCCCCCcccchhhhcCCCccEeecccccccc
Q 045202 601 LLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQ 640 (887)
Q Consensus 601 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~ 640 (887)
.+++|+.|++++|.++.++. ++.+.+|+.|+++++....
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 77777777777777777765 6677777777777775433
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=9.1e-11 Score=132.52 Aligned_cols=201 Identities=29% Similarity=0.421 Sum_probs=163.9
Q ss_pred EEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc-C--CccEEEccCCCCCCCCcchhcCCCCcEEecccCCC
Q 045202 420 ILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS-G--NIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKT 496 (887)
Q Consensus 420 ~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~-~--~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 496 (887)
.+++..+...........++.++.|++.++ .+..++.... . +|+.|++++|.+..+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-
Confidence 566666665455544445778889998886 4555555444 3 8999999999999999889999999999999987
Q ss_pred CccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccc
Q 045202 497 LKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSV 576 (887)
Q Consensus 497 ~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 576 (887)
+..+|...+.++.|+.|++++|. ...+|..++.+..|++|.+++|.+...+..+.++.++..|.+.+|++.. ++..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~ 251 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchh
Confidence 55666666689999999999976 5567777777788999999999988888999999999999999888663 25668
Q ss_pred cCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCC
Q 045202 577 DGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLS 626 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 626 (887)
+.+++|+.|++++|.++.++. ++.+.+|+.|++++|.+..++.......
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~~ 300 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLL 300 (394)
T ss_pred ccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhccc
Confidence 889999999999999999887 8899999999999999986665444433
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=5e-10 Score=116.57 Aligned_cols=196 Identities=19% Similarity=0.216 Sum_probs=101.7
Q ss_pred cccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH------HHH
Q 045202 21 LVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL------RQQ 94 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l------~~~ 94 (887)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+......... ....+ .+.
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 699999999999999854 346799999999999999999999774433334444322111100 01111 111
Q ss_pred HHHHHhcCCC----------CCCCcccchHHHHHhh--CCceEEEEEecCCCHH-----------HHHHHhcCCCCCCCC
Q 045202 95 LLSTLLNDGN----------VKSFPNIGLNFQSKRL--TRKKVLIVFYDVNHPR-----------QIEFLVGRLDLFASG 151 (887)
Q Consensus 95 il~~l~~~~~----------~~~~~~~~~~~~~~~l--~~kk~LiVlDdv~~~~-----------~~~~l~~~~~~~~~g 151 (887)
+...+..... ...........+.+.+ .+++++||+||++... .+..+..... ....
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCC
Confidence 2222211110 0111122233333333 2356999999997554 1222333222 2234
Q ss_pred cEEEEEeCChhhhhh--------cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 152 SRIIITTRDRQLLTN--------CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 152 srIiiTTR~~~v~~~--------~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
-.+|+++....+... .+....+.+++|+.+++++++...+-.. ..-+.-.+..++|+..++|+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 445556555555443 1233459999999999999998865322 11012345668999999999988753
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=8.2e-12 Score=135.23 Aligned_cols=193 Identities=27% Similarity=0.374 Sum_probs=160.4
Q ss_pred CCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEe
Q 045202 438 LGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSI 515 (887)
Q Consensus 438 l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L 515 (887)
+..-...||+.| ....+|.-.. ..|+.+.|..|.+..+|..+.++..|.+|||+.|. +..+|..++.|+ |+.|.+
T Consensus 74 ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence 444455666664 3444554433 67788888889999999999999999999999977 678888888776 899999
Q ss_pred eCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCc
Q 045202 516 DGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMEL 595 (887)
Q Consensus 516 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l 595 (887)
++|+ +..+|+.++.+..|..||.+.|.+..+|+.++.+.+|+.|.+..|++. .+|..+..+ .|..||+|+|++..+
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~--~lp~El~~L-pLi~lDfScNkis~i 226 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE--DLPEELCSL-PLIRLDFSCNKISYL 226 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh--hCCHHHhCC-ceeeeecccCceeec
Confidence 9864 678899999999999999999999999999999999999999888877 456656644 689999999999999
Q ss_pred cccccCCCCCcEEEcCCCCCcccchhhhc---CCCccEeeccccc
Q 045202 596 PESLGLLSSVRELHLNGNNFERIPESIIQ---LSNLKSLFIRYCE 637 (887)
Q Consensus 596 p~~~~~l~~L~~L~L~~n~l~~lp~~l~~---l~~L~~L~L~~c~ 637 (887)
|-.|..+..|++|-|.+|.+.+=|..+.- ..--++|+..-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 99999999999999999999998877643 4456788888884
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=4.2e-11 Score=119.74 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=108.3
Q ss_pred hcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcE
Q 045202 528 LGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRE 607 (887)
Q Consensus 528 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~ 607 (887)
+...+.|++|||++|.|+++..+..-++.++.|+++.|.+.... .+..+++|+.||||+|.++++..+-..+-+.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh---hhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 44456799999999999999999999999999999999876432 377889999999999999888777778888999
Q ss_pred EEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccc-cCccceEecccCCCCCCCCcc
Q 045202 608 LHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLV-GCASLHGTGIIRRFIPNSSES 672 (887)
Q Consensus 608 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~-~~~~L~~L~l~~N~l~~~~~~ 672 (887)
|.|++|.|.++. .+..+-+|..||+++|+ |.++-.--.. ++|-|+.+.+.+|.+.++...
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N~----Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSNQ----IEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheeccccccc----hhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 999999888876 68888999999999986 3222211112 667788888888888876543
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.06 E-value=3.9e-09 Score=119.21 Aligned_cols=205 Identities=14% Similarity=0.136 Sum_probs=124.9
Q ss_pred CCCCCcccccccHHHHHHhHhcC--CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc--eEEEccccHHHHhcCCHHHH
Q 045202 16 SETNDLVGVELPMKEIESLLRSG--STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA--GSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~~~~l 91 (887)
..++.++||+.++++|...+... ......+.|+|++|+||||+++.+++++..... ..+++. .....+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHH
Confidence 46678999999999999998542 223456789999999999999999998765542 233442 1222345677
Q ss_pred HHHHHHHHhcCCCCC--CCcccchHHHHHhhC--CceEEEEEecCCCHH------HHHHHhcCCCCCCCCcE--EEEEeC
Q 045202 92 RQQLLSTLLNDGNVK--SFPNIGLNFQSKRLT--RKKVLIVFYDVNHPR------QIEFLVGRLDLFASGSR--IIITTR 159 (887)
Q Consensus 92 ~~~il~~l~~~~~~~--~~~~~~~~~~~~~l~--~kk~LiVlDdv~~~~------~~~~l~~~~~~~~~gsr--IiiTTR 159 (887)
..+++.++....... .+..+....+.+.+. ++.++||||+++... .+..+...... ..+++ ||.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEEC
Confidence 788888876532211 223344455555554 456899999998643 34444433221 13333 666766
Q ss_pred ChhhhhhcC-------CCceEecCCCChHHHHHHHHHhh---cCCCCCCccH-HHHHHHHHHhhCCChHHHHHHHHH
Q 045202 160 DRQLLTNCG-------VDEKYQMKELVHADALKLFSRHA---FGGDHPYESH-TELTCKTIKYARGVPLALKVWHQA 225 (887)
Q Consensus 160 ~~~v~~~~~-------~~~~~~v~~L~~~~a~~Lf~~~a---f~~~~~~~~~-~~l~~~i~~~~~GlPLal~~lg~~ 225 (887)
+..+..... ....+.+++++.++..+++..++ |......++. ..+++......+..+.|+.++-.+
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 654433221 13467899999999999988775 2222222222 222333323345577787766543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=4.3e-11 Score=119.68 Aligned_cols=191 Identities=21% Similarity=0.183 Sum_probs=127.8
Q ss_pred CCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCCcchhcCCCCcEEeccc---CCCCccCCcccCCCCCCcE
Q 045202 438 LGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELPSSIECLSKLLHLDLVD---CKTLKSLPSGLGKLKSLGI 512 (887)
Q Consensus 438 l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~---~~~~~~lp~~l~~L~~L~~ 512 (887)
+.+|+.+.++.|.. +.+-.+.. +.|.++...++.+...|.-+ -...+ -|... ....+..-..+..+..|++
T Consensus 213 f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 213 FRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETIL--ADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hhhhheeeeeccch-hheeceeecCchhheeeeeccccccccccc-chhhh--cCccCCCCCccCCceEEecchHhhhhh
Confidence 77888888888753 22222222 78888888887776443211 00111 11111 1112222333445677888
Q ss_pred EEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCC
Q 045202 513 LSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCI 592 (887)
Q Consensus 513 L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l 592 (887)
|+||+|.+ ..+.+.+.-++.++.|++++|.|..+-. +..+++|+.|+|++|.+.. +..+-..+-+.+.|.|+.|.+
T Consensus 289 lDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 289 LDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred ccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhH
Confidence 88888653 4556667777888888888888887654 7888888888888887653 223334567888888888877
Q ss_pred CCccccccCCCCCcEEEcCCCCCcccc--hhhhcCCCccEeeccccc
Q 045202 593 MELPESLGLLSSVRELHLNGNNFERIP--ESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 593 ~~lp~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~ 637 (887)
.++ +.++.+-+|..||+++|+|..+. ..|+++|.|++|.|.+|+
T Consensus 365 E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 365 ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 665 35667788999999999988665 478899999999999997
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.8e-11 Score=127.44 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=45.3
Q ss_pred CCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC--cccc-----ccCCCCCcEEEcCCCCCcccc--hhhhc
Q 045202 554 LKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME--LPES-----LGLLSSVRELHLNGNNFERIP--ESIIQ 624 (887)
Q Consensus 554 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--lp~~-----~~~l~~L~~L~L~~n~l~~lp--~~l~~ 624 (887)
+..|+.|+|++|++.++..-...+.++.|..|+++.|.+.+ +|+. ...+++|++|++..|++..++ ..+..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 34444455544444433333334555555555555555554 3332 345667777777777776555 24455
Q ss_pred CCCccEeeccccc
Q 045202 625 LSNLKSLFIRYCE 637 (887)
Q Consensus 625 l~~L~~L~L~~c~ 637 (887)
+++|+.|.+..|.
T Consensus 325 l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 325 LENLKHLRITLNY 337 (505)
T ss_pred cchhhhhhccccc
Confidence 6666666665554
No 35
>PF05729 NACHT: NACHT domain
Probab=99.03 E-value=1.9e-09 Score=105.71 Aligned_cols=143 Identities=17% Similarity=0.243 Sum_probs=86.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhccc------ceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHS------AGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQ 116 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~ 116 (887)
|++.|.|.+|+||||+++.++.++.... ...+|+ ..+..........+...+..+......... . ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~--~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFF-SLRDISDSNNSRSLADLLFDQLPESIAPIE---E--LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEE-eehhhhhccccchHHHHHHHhhccchhhhH---H--HHH
Confidence 6899999999999999999998765443 333343 333433332222344444333322111111 1 111
Q ss_pred HHhhCCceEEEEEecCCCHHH---------HHHHh-cCCCC-CCCCcEEEEEeCChhh---hhhcCCCceEecCCCChHH
Q 045202 117 SKRLTRKKVLIVFYDVNHPRQ---------IEFLV-GRLDL-FASGSRIIITTRDRQL---LTNCGVDEKYQMKELVHAD 182 (887)
Q Consensus 117 ~~~l~~kk~LiVlDdv~~~~~---------~~~l~-~~~~~-~~~gsrIiiTTR~~~v---~~~~~~~~~~~v~~L~~~~ 182 (887)
.-....++++||+|++|+... +..+. .-++. ..++.+||||+|.... .........+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 122257899999999975432 11222 11221 3578999999998777 2233344689999999999
Q ss_pred HHHHHHHhh
Q 045202 183 ALKLFSRHA 191 (887)
Q Consensus 183 a~~Lf~~~a 191 (887)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999886654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.8e-11 Score=123.81 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=28.5
Q ss_pred CCcccEEecccCCCCCcc--ccccCCCCCcEEEcCCCCCc--ccchh-----hhcCCCccEeeccccc
Q 045202 579 LQNLLDLSLNDCCIMELP--ESLGLLSSVRELHLNGNNFE--RIPES-----IIQLSNLKSLFIRYCE 637 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l~--~lp~~-----l~~l~~L~~L~L~~c~ 637 (887)
++.|+.|||++|++.+++ ...+.++.|+.|+++.|.+. .+|+. ...+++|++|++..|+
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 444555555555555444 34445555555555555554 22322 2334555555555554
No 37
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.97 E-value=2.3e-08 Score=111.63 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=120.9
Q ss_pred CCCCCCcccccccHHHHHHhHhcC--CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc------eEEEccccHHHHhcC
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG--STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA------GSYFANNVREAEETG 86 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~s~~~ 86 (887)
...++.++||+.++++|..+|... ......+.|+|++|+|||++|+++++++....+ ..+|+.. ....
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~~~ 86 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QILD 86 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CCCC
Confidence 345678999999999999998741 223457899999999999999999997654322 2344421 2223
Q ss_pred CHHHHHHHHHHHHhc--CCCCC--CCcccchHHHHHhh--CCceEEEEEecCCCHH-----HHHHHhcCCCC-C--CCCc
Q 045202 87 RLGDLRQQLLSTLLN--DGNVK--SFPNIGLNFQSKRL--TRKKVLIVFYDVNHPR-----QIEFLVGRLDL-F--ASGS 152 (887)
Q Consensus 87 ~~~~l~~~il~~l~~--~~~~~--~~~~~~~~~~~~~l--~~kk~LiVlDdv~~~~-----~~~~l~~~~~~-~--~~gs 152 (887)
+..++...++.++.. ..... .+..+....+.+.+ .+++++||||+++... .+..+.....+ . +..-
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 445777778877742 11111 11222334444444 3568999999998761 13333322111 1 1233
Q ss_pred EEEEEeCChhhhhhcC-------CCceEecCCCChHHHHHHHHHhhc---CCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 153 RIIITTRDRQLLTNCG-------VDEKYQMKELVHADALKLFSRHAF---GGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 153 rIiiTTR~~~v~~~~~-------~~~~~~v~~L~~~~a~~Lf~~~af---~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
.+|.+|.......... ....+.+++.+.++..+++..++- ....-.++..+.+.+++....|.|-.
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 4556665554322211 125688999999999999988762 22222334445666677777888843
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=5.1e-10 Score=108.53 Aligned_cols=101 Identities=25% Similarity=0.354 Sum_probs=24.8
Q ss_pred CCceeeccCccCccCCcccc-CCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccc-cCCCCCcEEEc
Q 045202 533 ALDSLHAVGTAITEVPPSIV-RLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESL-GLLSSVRELHL 610 (887)
Q Consensus 533 ~L~~L~L~~n~i~~lp~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~-~~l~~L~~L~L 610 (887)
.++.|+|++|.|+.+. .++ .+.+|+.|++++|.+.... .+..++.|++|++++|.++++++.+ ..+++|++|+|
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~---~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE---GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T---T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc---CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3444555555444432 222 3444555555555444322 2444555555555555555554333 24555666666
Q ss_pred CCCCCcccc--hhhhcCCCccEeeccccc
Q 045202 611 NGNNFERIP--ESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 611 ~~n~l~~lp--~~l~~l~~L~~L~L~~c~ 637 (887)
++|+|..+. ..+..+++|+.|+|.+|+
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 665555332 234455556666666555
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=5e-10 Score=108.55 Aligned_cols=103 Identities=30% Similarity=0.339 Sum_probs=38.6
Q ss_pred CCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccc-cCCCcccEEecccCCCCCcc--ccccCCCCCcE
Q 045202 531 LQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSV-DGLQNLLDLSLNDCCIMELP--ESLGLLSSVRE 607 (887)
Q Consensus 531 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~ 607 (887)
+.+|+.|++++|.|+.++ .+..+++|+.|++++|.+.+.. ..+ ..+++|+.|++++|++.++- ..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~--~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS--EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C--HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc--cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 344444444444444442 2444455555555555544321 112 23555666666666555432 34566788888
Q ss_pred EEcCCCCCcccc----hhhhcCCCccEeecccc
Q 045202 608 LHLNGNNFERIP----ESIIQLSNLKSLFIRYC 636 (887)
Q Consensus 608 L~L~~n~l~~lp----~~l~~l~~L~~L~L~~c 636 (887)
|+|.+|.++.-+ ..+..+|+|+.||-...
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 888888777554 24677888888886553
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.92 E-value=1.3e-08 Score=107.36 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=106.1
Q ss_pred CcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHH
Q 045202 20 DLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTL 99 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l 99 (887)
+++|-+..+.+ ++. +..+.-+-.||++|+||||||+.+.......|...-=+ ..++.++.+-+ ++
T Consensus 31 HLlg~~~~lrr---~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~-e~- 95 (436)
T COG2256 31 HLLGEGKPLRR---AVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREII-EE- 95 (436)
T ss_pred hhhCCCchHHH---HHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHH-HH-
Confidence 44444444443 343 34566778999999999999999999888777643222 23445554332 11
Q ss_pred hcCCCCCCCcccchHHHHHhhCCceEEEEEecCC--CHHHHHHHhcCCCCCCCCcEEEE--EeCChhhhhh---cCCCce
Q 045202 100 LNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVN--HPRQIEFLVGRLDLFASGSRIII--TTRDRQLLTN---CGVDEK 172 (887)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~~---~~~~~~ 172 (887)
.-+.+..++|.++++|.|. +..|-+.+++. ...|.-|+| ||.++...-. .....+
T Consensus 96 ---------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 96 ---------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred ---------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 1134456899999999996 45556666554 457887776 7777665322 234579
Q ss_pred EecCCCChHHHHHHHHHhhcCCCCCC-----ccHHHHHHHHHHhhCCChHH
Q 045202 173 YQMKELVHADALKLFSRHAFGGDHPY-----ESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 173 ~~v~~L~~~~a~~Lf~~~af~~~~~~-----~~~~~l~~~i~~~~~GlPLa 218 (887)
+++++|+.++-.+++.+.+-.....- .--++.-+-+++.+.|---+
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 99999999999999988442221111 11234556677788886543
No 41
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=4.8e-08 Score=104.12 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=108.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHH---
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSK--- 118 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~--- 118 (887)
..++.|+|++|+||||+|+.+++.....=-..+|+. ....+..++...+...++..... .........+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHH
Confidence 457999999999999999999987653211223332 12334567777777766443221 111112222322
Q ss_pred --hhCCceEEEEEecCCCHH--HHHHHhcCCC---CCCCCcEEEEEeCChhhhhhc----------CCCceEecCCCChH
Q 045202 119 --RLTRKKVLIVFYDVNHPR--QIEFLVGRLD---LFASGSRIIITTRDRQLLTNC----------GVDEKYQMKELVHA 181 (887)
Q Consensus 119 --~l~~kk~LiVlDdv~~~~--~~~~l~~~~~---~~~~gsrIiiTTR~~~v~~~~----------~~~~~~~v~~L~~~ 181 (887)
...++++++|+||++... .++.+..-.. .......|++|.... +.... .....+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 226788999999998743 4555432211 112233456665432 22111 12346889999999
Q ss_pred HHHHHHHHhhcCCC--CCCccHHHHHHHHHHhhCCChHHHHHHHHHHh
Q 045202 182 DALKLFSRHAFGGD--HPYESHTELTCKTIKYARGVPLALKVWHQAVF 227 (887)
Q Consensus 182 ~a~~Lf~~~af~~~--~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 227 (887)
|..+++...+-... ....--.+..+.|++.++|.|..+..++..+.
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 99998877653221 11122357889999999999999998885543
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=2.5e-10 Score=117.44 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=106.4
Q ss_pred CCCCCcEEEeeCCCCCCCCch----hhcCCCCCceeeccCccCccCC--------------ccccCCCCCCEEEccccCC
Q 045202 506 KLKSLGILSIDGCSNLQRLPE----ELGNLQALDSLHAVGTAITEVP--------------PSIVRLKRVRGIYLGRNRG 567 (887)
Q Consensus 506 ~L~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~L~~n~i~~lp--------------~~l~~l~~L~~L~L~~n~~ 567 (887)
..++|++|+||.|-+-...+. -+..++.|++|.|.+|.+...- .-+..-+.|+++..+.|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 344555555555544333222 2344555555555555554111 1233456788888888876
Q ss_pred Ccccc---cccccCCCcccEEecccCCCCC-----ccccccCCCCCcEEEcCCCCCc-----ccchhhhcCCCccEeecc
Q 045202 568 LSLPI---TFSVDGLQNLLDLSLNDCCIME-----LPESLGLLSSVRELHLNGNNFE-----RIPESIIQLSNLKSLFIR 634 (887)
Q Consensus 568 ~~~~~---~~~~~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~ 634 (887)
..++- ...+...+.|+.+.++.|.+.. +-..+..+++|+.|||..|-++ .+...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 65432 2235556788888888887763 3456778888888888888776 344556677888888888
Q ss_pred ccccccccC-CCcccccccCccceEecccCCCCCCCCcchh----hhhcccCcccCCCCCC
Q 045202 635 YCERLQFLP-KLPCNLLVGCASLHGTGIIRRFIPNSSESDF----LDLYLSDNFKLDPNDL 690 (887)
Q Consensus 635 ~c~~l~~lp-~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~----~~l~~l~~l~L~~N~l 690 (887)
+|..-..=. .+...+....++|+.+.+.+|.|+.-..... ...+.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 885221110 0111111245777777777777764221111 2245555666666666
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.87 E-value=4.2e-08 Score=101.24 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=108.1
Q ss_pred CCCCCCCcccccccHHHHHHhHhc-CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRS-GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
.+...++|+|-+... -+..+... .....+.+.+||.+|+|||+||+++.+++..+.....|+.. ... ....
T Consensus 11 ~~~~fd~f~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~~---~~~~ 82 (229)
T PRK06893 11 DDETLDNFYADNNLL-LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SKS---QYFS 82 (229)
T ss_pred CcccccccccCChHH-HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HHh---hhhh
Confidence 344556777544321 12212111 11233578999999999999999999987666666677732 100 0000
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH---HHHHH-HhcCCCC-CCCCcEEEEEeCC-------
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP---RQIEF-LVGRLDL-FASGSRIIITTRD------- 160 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~---~~~~~-l~~~~~~-~~~gsrIiiTTR~------- 160 (887)
.+ +.+.+. +.-+||+||+|.. .+|+. +...+.. ...|++||++|.+
T Consensus 83 ~~---------------------~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~ 140 (229)
T PRK06893 83 PA---------------------VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALS 140 (229)
T ss_pred HH---------------------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc
Confidence 01 111122 2248999999863 34542 2222221 1246666555443
Q ss_pred ---hhhhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHH
Q 045202 161 ---RQLLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAV 226 (887)
Q Consensus 161 ---~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 226 (887)
+.+...++....++++.+++++.++++.+.++...-. --.+..+-+++++.|..-++..+-..|
T Consensus 141 ~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 141 IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3555555556799999999999999999999754322 224677888889998887766544444
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=2.9e-10 Score=116.92 Aligned_cols=132 Identities=15% Similarity=0.218 Sum_probs=62.6
Q ss_pred CCCCCcEEEeeCCCCCC----CCchhhcCCCCCceeeccCccCc--c---CCccccCCCCCCEEEccccCCCc---cccc
Q 045202 506 KLKSLGILSIDGCSNLQ----RLPEELGNLQALDSLHAVGTAIT--E---VPPSIVRLKRVRGIYLGRNRGLS---LPIT 573 (887)
Q Consensus 506 ~L~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~--~---lp~~l~~l~~L~~L~L~~n~~~~---~~~~ 573 (887)
+-+.|+++...+|..-. .+...+...+.|+.+.+..|.|. . +-..+..+++|+.|+|..|.++. ..+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34455555555554321 12233445555566666555554 1 12244555566666665554332 1222
Q ss_pred ccccCCCcccEEecccCCCCC-----ccccc-cCCCCCcEEEcCCCCCc-----ccchhhhcCCCccEeeccccc
Q 045202 574 FSVDGLQNLLDLSLNDCCIME-----LPESL-GLLSSVRELHLNGNNFE-----RIPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 574 ~~~~~l~~L~~L~Ls~n~l~~-----lp~~~-~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~ 637 (887)
..++.+++|+.|++++|.+.. +-..+ ...|+|+.|.|.+|.|+ .+-..+...+.|..|+|++|.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 234445555666666665543 11111 23455566666665554 222333445555555555554
No 45
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=2.1e-07 Score=105.06 Aligned_cols=179 Identities=18% Similarity=0.275 Sum_probs=109.8
Q ss_pred CCCCCCcccccccHHH---HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKE---IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||.+..+.+ +..++..+ ....+.++|++|+||||+|+.+++.....|...... ..+..++
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~--------~~~~~~i 77 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV--------TSGVKDL 77 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc--------cccHHHH
Confidence 3445689999877666 77777643 455788899999999999999999876555322111 1122222
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEE--EeCChhhh--h
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIII--TTRDRQLL--T 165 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIii--TTR~~~v~--~ 165 (887)
++++..... ....+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.... .
T Consensus 78 -r~ii~~~~~----------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 -REVIEEARQ----------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred -HHHHHHHHH----------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 122222110 112457889999999854 45566655543 3555555 34443221 1
Q ss_pred h-cCCCceEecCCCChHHHHHHHHHhhcCCCCCC-ccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 166 N-CGVDEKYQMKELVHADALKLFSRHAFGGDHPY-ESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 166 ~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
. ......++++.++.++..+++.+.+-...... .-..+..+.++++++|.+..+..+-
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1 12236899999999999999988653211111 2234667888999999997665433
No 46
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.66 E-value=1.2e-07 Score=102.90 Aligned_cols=193 Identities=17% Similarity=0.167 Sum_probs=107.4
Q ss_pred CCcccccccHHHHHHhHhcC---CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSG---STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQL 95 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~i 95 (887)
++|||++..+++|..++... ......+.++|++|+|||+||+++.+++...+.. . .. .......++.. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~---~-~~---~~~~~~~~l~~-~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKI---T-SG---PALEKPGDLAA-I 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE---e-cc---chhcCchhHHH-H
Confidence 57999999999999888632 2234568899999999999999999987544321 1 00 00011111111 1
Q ss_pred HHHHhcCCCC-----CCCcccchHHHHHhhCCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhc--C
Q 045202 96 LSTLLNDGNV-----KSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNC--G 168 (887)
Q Consensus 96 l~~l~~~~~~-----~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~--~ 168 (887)
+..+....-. ..-.....+.+...+.+.+..+|+|+.....++... ..+.+-|..||+...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 1111110000 000001112223333334444444444333322211 12345566677765443322 1
Q ss_pred CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHh
Q 045202 169 VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVF 227 (887)
Q Consensus 169 ~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 227 (887)
....++++.++.++..+++.+.+-.... .--.+....+++.|+|.|-.+..++..+.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 2357899999999999999988743221 22246678899999999977666664443
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.66 E-value=1.7e-07 Score=102.61 Aligned_cols=181 Identities=18% Similarity=0.191 Sum_probs=106.6
Q ss_pred CCCCCCcccccccHHHHHHhHhc---CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRS---GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||++..++++..++.. .......+.|+|++|+||||+|+++.+++...+.. .. ..... ...++
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~---~~-~~~~~---~~~~l 93 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI---TS-GPALE---KPGDL 93 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEE---Ee-ccccc---ChHHH
Confidence 44567899999999999888763 12335678899999999999999999987654321 10 00000 01111
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--HHHHHhcCCC-------------------CCCC
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--QIEFLVGRLD-------------------LFAS 150 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~~~~l~~~~~-------------------~~~~ 150 (887)
..++..+ ++.-+|++||++... ..+.+..... ...+
T Consensus 94 -~~~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 94 -AAILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred -HHHHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 1112111 123355666664321 1111111000 0112
Q ss_pred CcEEEEEeCChhhhhhc--CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHh
Q 045202 151 GSRIIITTRDRQLLTNC--GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVF 227 (887)
Q Consensus 151 gsrIiiTTR~~~v~~~~--~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 227 (887)
.+-|..|||...+.... .....++++.++.++..+++.+.+-.... .--.+.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 45566677755443322 12357899999999999999988744322 22346788999999999976655554433
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.64 E-value=6.9e-07 Score=92.51 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=105.7
Q ss_pred CCCCccc--ccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 17 ETNDLVG--VELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 17 ~~~~~vG--r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
..+++++ .+..++++.+++.. ...+.|.|+|.+|+||||+|++++++.........++. +...... . ..
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~--~----~~ 83 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA--D----PE 83 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh--H----HH
Confidence 3456663 33456677777542 33467999999999999999999997665544455552 1111110 0 01
Q ss_pred HHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCChh-------
Q 045202 95 LLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR---Q-IEFLVGRLDL-FASGSRIIITTRDRQ------- 162 (887)
Q Consensus 95 il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~~------- 162 (887)
++ ..+.. .-+||+||++... . .+.+...+.. ...+.+||+||+...
T Consensus 84 ~~---------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 84 VL---------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred HH---------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 11 11112 2389999997543 2 2233322211 123457888887432
Q ss_pred --hhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHh
Q 045202 163 --LLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVF 227 (887)
Q Consensus 163 --v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 227 (887)
+.........+++++++.++...++...+-+... .--.+..+.+++++.|.|..+.-+-..+.
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 2222222467999999999999998876532221 12245667888889999988876654433
No 49
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=4.8e-07 Score=113.93 Aligned_cols=193 Identities=14% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~ 93 (887)
+|....++|-|+.-++. |.. ....+++.|.|++|.||||++.....+ ++.++|+..- ....+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~----l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l~---~~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAK----LSG-ANNYRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSLD---ESDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHH----Hhc-ccCCCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEecC---cccCCHHHHHH
Confidence 45566788888744444 432 246789999999999999999987753 3358899421 12223344555
Q ss_pred HHHHHHhcCCCCC-------------CCcccchHHHHHhhC--CceEEEEEecCCCHH------HHHHHhcCCCCCCCCc
Q 045202 94 QLLSTLLNDGNVK-------------SFPNIGLNFQSKRLT--RKKVLIVFYDVNHPR------QIEFLVGRLDLFASGS 152 (887)
Q Consensus 94 ~il~~l~~~~~~~-------------~~~~~~~~~~~~~l~--~kk~LiVlDdv~~~~------~~~~l~~~~~~~~~gs 152 (887)
.++..+....... .........+...+. +.+++|||||+...+ .+..+... ..++-
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCe
Confidence 5555553211110 000111122222332 678999999996532 23344433 34677
Q ss_pred EEEEEeCChhhhh--hc-CCCceEecC----CCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHH
Q 045202 153 RIIITTRDRQLLT--NC-GVDEKYQMK----ELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQA 225 (887)
Q Consensus 153 rIiiTTR~~~v~~--~~-~~~~~~~v~----~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~ 225 (887)
++|||||...-.. .. -.....++. .|+.+|+.++|....-. . --.+.+.++.+.++|.|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~----~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-P----IEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-C----CCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 8989999843221 11 123355666 89999999999765411 1 12356778999999999999988854
Q ss_pred H
Q 045202 226 V 226 (887)
Q Consensus 226 L 226 (887)
+
T Consensus 229 ~ 229 (903)
T PRK04841 229 A 229 (903)
T ss_pred H
Confidence 4
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=9.6e-09 Score=116.30 Aligned_cols=221 Identities=25% Similarity=0.209 Sum_probs=105.3
Q ss_pred CccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccC
Q 045202 462 NIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVG 541 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 541 (887)
+|+.|++.+|.|..+...+..+++|++|+|++|.+...-+ +..++.|+.|++++|.+... ..+..+++|+.+++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSY 171 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCc
Confidence 3333444444444444334455555555555554333221 33444455555555543321 2233355566666666
Q ss_pred ccCccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCC--CCcEEEcCCCCCccc
Q 045202 542 TAITEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLS--SVRELHLNGNNFERI 618 (887)
Q Consensus 542 n~i~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~--~L~~L~L~~n~l~~l 618 (887)
|.+..+... ...+.+|+.+.++.|.+.... .+..+..+..+++..|.++.+-. +..+. .|+.+++++|.+..+
T Consensus 172 n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 172 NRIVDIENDELSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred chhhhhhhhhhhhccchHHHhccCCchhccc---chHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccc
Confidence 665555443 355555666666555543221 12233334444555555554221 11122 266666666666666
Q ss_pred chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCC---cch-hhhhcccCcccCCCCCCCcch
Q 045202 619 PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSS---ESD-FLDLYLSDNFKLDPNDLGGIF 694 (887)
Q Consensus 619 p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~---~~~-~~~l~~l~~l~L~~N~l~~i~ 694 (887)
+..+..+..+..|++.+|+.. .+..++ ..+.+..+....|.+.... ... ......+....+..|.+....
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRIS-NLEGLE-----RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cccccccccccccchhhcccc-cccccc-----ccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 555666666666666666411 111111 2233444444444444211 111 223455556777777776665
Q ss_pred hH
Q 045202 695 KG 696 (887)
Q Consensus 695 ~~ 696 (887)
+.
T Consensus 322 ~~ 323 (414)
T KOG0531|consen 322 SL 323 (414)
T ss_pred cc
Confidence 43
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=1.2e-08 Score=115.54 Aligned_cols=248 Identities=23% Similarity=0.233 Sum_probs=150.5
Q ss_pred cCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcc-ccc-CCccEEEccCCCCCCCCcchhcCCCCcEEec
Q 045202 414 HLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPE-ISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDL 491 (887)
Q Consensus 414 ~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~-~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 491 (887)
.+..++.+++..|.+.......-.+++|+.|++.+|. +..+.. ... .+|++|++++|.|+.+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 4556666667766655422222247788888888753 444444 333 788888888888887764 666777888888
Q ss_pred ccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCc-hhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcc
Q 045202 492 VDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLP-EELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSL 570 (887)
Q Consensus 492 ~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~ 570 (887)
++|.+.. ++ .+..+++|+.+++++|.+...-+ . ...+.+|+.+.+.+|.+..+. .+..+..+..+++..|.+...
T Consensus 148 ~~N~i~~-~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 148 SGNLISD-IS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred ccCcchh-cc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceec
Confidence 8876433 22 24457788888888877654433 2 466777888888888776553 223333444446666654432
Q ss_pred cccccccCCC--cccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCccc
Q 045202 571 PITFSVDGLQ--NLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCN 648 (887)
Q Consensus 571 ~~~~~~~~l~--~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~ 648 (887)
.- +..+. .|+.+++++|.+..++..+..+..+..|++..|++..+. .+...+.+..+.+..++...........
T Consensus 224 ~~---l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 224 EG---LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred cC---cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhhhccc
Confidence 11 22222 277888888888777666777778888888888776554 3455666666666666533221111111
Q ss_pred ccccCccceEecccCCCCCCCCc
Q 045202 649 LLVGCASLHGTGIIRRFIPNSSE 671 (887)
Q Consensus 649 l~~~~~~L~~L~l~~N~l~~~~~ 671 (887)
.....+.++.+.+..|.+....+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccccccCccccccc
Confidence 11245667777777776665444
No 52
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.56 E-value=3.5e-07 Score=101.64 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=103.5
Q ss_pred CCCCCcccccccHHHHHHhHhcC--C---------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 16 SETNDLVGVELPMKEIESLLRSG--S---------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
...+++.|++..+++|.+.+... . ...+-+.++|++|+|||++|++++++....|-.....
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~-------- 190 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS-------- 190 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH--------
Confidence 34467899999999998877421 1 1245689999999999999999999876655322110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccch-HHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCCCC
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGL-NFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRLDL 147 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~-~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~~~ 147 (887)
++......+ ..... ..++..-...+.+|++||++.. ..+..+...+..
T Consensus 191 -----~l~~~~~g~----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 191 -----ELVRKYIGE----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred -----HHHHHhhhH----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 111110000 00001 1111112345679999998753 113333333322
Q ss_pred C--CCCcEEEEEeCChhh-----hhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCC-ccHHHHHHHHHHhhCCCh
Q 045202 148 F--ASGSRIIITTRDRQL-----LTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPY-ESHTELTCKTIKYARGVP 216 (887)
Q Consensus 148 ~--~~gsrIiiTTR~~~v-----~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlP 216 (887)
. ..+.+||.||..... ......+..++++..+.++..++|..++.+...+. .++ ..+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 1 246778888875433 22223467899999999999999999886544332 233 45566676654
No 53
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.4e-07 Score=111.90 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=51.3
Q ss_pred CcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCc-cCCccccCCCCCCEEEccc
Q 045202 486 LLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAIT-EVPPSIVRLKRVRGIYLGR 564 (887)
Q Consensus 486 L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~ 564 (887)
++.|+|++|.+.+.+|..++++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+. .+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444455555444455555555555555555555544455555555555555555555554 3444455555555555554
Q ss_pred cCCCcccccccccCC-CcccEEecccCC
Q 045202 565 NRGLSLPITFSVDGL-QNLLDLSLNDCC 591 (887)
Q Consensus 565 n~~~~~~~~~~~~~l-~~L~~L~Ls~n~ 591 (887)
|.+. +.+|..+..+ .++..+++.+|.
T Consensus 500 N~l~-g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLS-GRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred Cccc-ccCChHHhhccccCceEEecCCc
Confidence 4422 2334433332 344555666553
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.55 E-value=3.6e-07 Score=90.53 Aligned_cols=173 Identities=20% Similarity=0.237 Sum_probs=98.2
Q ss_pred CCCCCCcccccccHHHHHHhHhc---CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRS---GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||-+.-++++.-++.. ..+...-+-.||++|+||||||+.+.++....|.. .... .... ..++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg~-~i~k---~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSGP-AIEK---AGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EECC-C--S---CHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccch-hhhh---HHHH
Confidence 55678999999888887766542 23446678999999999999999999998877742 2100 0111 1122
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCC--------CCCC----------
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDL--------FASG---------- 151 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~--------~~~g---------- 151 (887)
.. ++ ..+ +++-++++|+++.. .+-+.|.....+ .+++
T Consensus 93 ~~-il---------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 AA-IL---------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp HH-HH---------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred HH-HH---------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 11 11 112 23457888999753 334444333221 1222
Q ss_pred -cEEEEEeCChhhhhhcCC--CceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 152 -SRIIITTRDRQLLTNCGV--DEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 152 -srIiiTTR~~~v~~~~~~--~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
+-|=.|||...+...... .-+.+++..+.+|-.++..+.|-.-.. +-..+.+.+|++++.|-|--.
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHH
Confidence 345568887666544422 235689999999999999988743322 334678899999999999543
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.7e-07 Score=111.10 Aligned_cols=109 Identities=28% Similarity=0.352 Sum_probs=68.3
Q ss_pred CceeeccCccCc-cCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcC
Q 045202 534 LDSLHAVGTAIT-EVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLN 611 (887)
Q Consensus 534 L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~ 611 (887)
++.|+|++|.+. .+|..+..+++|+.|+|+.|.+. +.+|..++.+++|+.|+|++|+++. +|+.++.+++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 445555555555 44555555555666666555532 3445556666667777777777664 67777777777777777
Q ss_pred CCCCc-ccchhhhcC-CCccEeeccccccccccC
Q 045202 612 GNNFE-RIPESIIQL-SNLKSLFIRYCERLQFLP 643 (887)
Q Consensus 612 ~n~l~-~lp~~l~~l-~~L~~L~L~~c~~l~~lp 643 (887)
+|+++ .+|..+..+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 77777 777766553 456677777776554444
No 56
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.49 E-value=1.7e-06 Score=100.36 Aligned_cols=208 Identities=15% Similarity=0.115 Sum_probs=112.0
Q ss_pred CCCCCCcccccccHHHHHHhHhc---CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-----cc--eEEEccccHHHHh
Q 045202 15 QSETNDLVGVELPMKEIESLLRS---GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-----SA--GSYFANNVREAEE 84 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----f~--~~~~~~~~~~~s~ 84 (887)
...++.++|||.++++|...|.. ++....++-|+|++|+|||+.++.|.+++... .. ..+++. + ..
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-C---m~ 826 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-G---MN 826 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-C---Cc
Confidence 34568999999999999988875 22333578899999999999999999876432 11 123331 1 11
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC-CCcccchHHHHHhh-C--CceEEEEEecCCCHH--HHHHHhcCCCCC-CCCcEEEE-
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVK-SFPNIGLNFQSKRL-T--RKKVLIVFYDVNHPR--QIEFLVGRLDLF-ASGSRIII- 156 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~-~~~~~~~~~~~~~l-~--~kk~LiVlDdv~~~~--~~~~l~~~~~~~-~~gsrIii- 156 (887)
-.....+...|..++.+..... ....+....+.+.+ . +...+||||+|+... .-+.|..-+.|. ..+++|++
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 1234456666666664432211 11112223333333 1 224599999997542 112222222221 24556554
Q ss_pred -EeCChhhh----hhcC---CCceEecCCCChHHHHHHHHHhhcCCC-CCCccHHH-HHHHHHHhhCCChHHHHHHHHHH
Q 045202 157 -TTRDRQLL----TNCG---VDEKYQMKELVHADALKLFSRHAFGGD-HPYESHTE-LTCKTIKYARGVPLALKVWHQAV 226 (887)
Q Consensus 157 -TTR~~~v~----~~~~---~~~~~~v~~L~~~~a~~Lf~~~af~~~-~~~~~~~~-l~~~i~~~~~GlPLal~~lg~~L 226 (887)
++.+..+. ..+. ....+..++.+.++-.+++..++-... .-.++..+ +|+.++...|-.-.||.++-.+.
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 33322221 1111 123466799999999999998874321 11222222 33333333344456665555443
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=5.7e-07 Score=84.25 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=76.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc-----cceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH-----SAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQ 116 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~ 116 (887)
-+++.|+|.+|+|||++++.+.++...+ -...+|+ ......+...+.+.++.++...........+....+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYV----NCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEE----EHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEE----EeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 4679999999999999999999876543 2334566 344444788999999999987665544455555666
Q ss_pred HHhhCCc-eEEEEEecCCCH---HHHHHHhcCCCCCCCCcEEEEEeCC
Q 045202 117 SKRLTRK-KVLIVFYDVNHP---RQIEFLVGRLDLFASGSRIIITTRD 160 (887)
Q Consensus 117 ~~~l~~k-k~LiVlDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~ 160 (887)
.+.+... ..+||+|+++.. +.++.+..-.. ..+.+||+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6666544 459999999765 33555544333 667788887765
No 58
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.46 E-value=5.4e-07 Score=93.19 Aligned_cols=150 Identities=21% Similarity=0.356 Sum_probs=95.1
Q ss_pred CCCCCCcccccccHHH---HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKE---IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...++.||.+.-+.+ |.+++. .+....+.+||++|+||||||+.+...-+.+- ..||......+...++
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dv--- 206 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDV--- 206 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHH---
Confidence 3444667777655543 444444 34566788999999999999999998655442 3455322122222222
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEE--EeCChhhhhh-
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIII--TTRDRQLLTN- 166 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~~- 166 (887)
+.++++... ...+.++|..+++|.|.. ..|-+.+ +|....|+-++| ||.++...-.
T Consensus 207 -R~ife~aq~---------------~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 207 -RDIFEQAQN---------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNA 267 (554)
T ss_pred -HHHHHHHHH---------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhH
Confidence 333333221 234678899999999963 3333433 345567887776 7777665321
Q ss_pred --cCCCceEecCCCChHHHHHHHHHh
Q 045202 167 --CGVDEKYQMKELVHADALKLFSRH 190 (887)
Q Consensus 167 --~~~~~~~~v~~L~~~~a~~Lf~~~ 190 (887)
.....++-++.|+.++-..++.+.
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHH
Confidence 234578999999999999998874
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=1.4e-06 Score=83.19 Aligned_cols=123 Identities=20% Similarity=0.166 Sum_probs=70.7
Q ss_pred ccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhc
Q 045202 22 VGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLN 101 (887)
Q Consensus 22 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~ 101 (887)
+|++..++++...+... ..+.+.|+|.+|+||||+|+++++.+...-....++. ....... ......+...
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~---~~~~~~~~~~--- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG---LVVAELFGHF--- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh---hHHHHHhhhh---
Confidence 47888889998888643 3467899999999999999999998753333344442 1111111 1111000000
Q ss_pred CCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-----HHHHHHhcCCCCC---CCCcEEEEEeCChh
Q 045202 102 DGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-----RQIEFLVGRLDLF---ASGSRIIITTRDRQ 162 (887)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-----~~~~~l~~~~~~~---~~gsrIiiTTR~~~ 162 (887)
............++.++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999853 2233333333221 46788888888654
No 60
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=6.5e-06 Score=89.50 Aligned_cols=178 Identities=17% Similarity=0.213 Sum_probs=113.9
Q ss_pred CCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh------cccceEEEccccHHHHhcCCHHHH
Q 045202 18 TNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS------RHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~------~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
.++++|-+..++++...+..+. -.+...++|+.|+||||+|++++..+. .|.+...|... ......+.++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~v~~i 78 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIGVDDI 78 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCCHHHH
Confidence 3578998888899999987543 235778999999999999999998652 34444444320 1122233332
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecC--CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhh-hh-c
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDV--NHPRQIEFLVGRLDLFASGSRIIITTRDRQLL-TN-C 167 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv--~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~ 167 (887)
. ++.+.+... -...++| ++|+|++ .+...++.+...+....+++.+|++|.+.+.. .. .
T Consensus 79 r-~~~~~~~~~---------------p~~~~~k-v~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 R-NIIEEVNKK---------------PYEGDKK-VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred H-HHHHHHhcC---------------cccCCce-EEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2 222222110 0112344 4555555 45667888888888777899999988766533 22 1
Q ss_pred CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 168 GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 168 ~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
...+.++++.++.++..+.+...+ .. -..+.++.++.+++|.|..+..+
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~-~~-----~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKY-ND-----IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHh-cC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 234689999999999988776543 21 11344678899999998765444
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=4.5e-06 Score=92.43 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=112.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc---------------------eE
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA---------------------GS 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~ 73 (887)
|...++++|-+.-++.+...+..+. -.+.+.++|+.|+||||+|+++.+.+..... ..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3456789999999999999887542 2457889999999999999999987542110 00
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--HHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--QIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~~~g 151 (887)
.++. .+....+.+ .+++.+.+.. ....+++-++|+|+++... .++.+...+......
T Consensus 91 ~~~~----~~~~~~v~~-ir~i~~~~~~----------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 91 IEID----AASRTKVEE-MREILDNIYY----------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred EEec----ccccCCHHH-HHHHHHHHhc----------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1110 000011111 1111111100 0012455689999998654 467777776655567
Q ss_pred cEEEEEeCChh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 152 SRIIITTRDRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 152 srIiiTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
.++|++|.+.+ +.... +....+++++++.++..+.+...+-.... .--.+.++.+++.++|.|-.+.
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 77887776543 33222 23468999999999998888776533221 1123566788899999886443
No 62
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=1.1e-06 Score=81.76 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=77.6
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT 121 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (887)
-+++.|.|+.|+||||+++.++.+.. .-...+++.-- +... ..... . + ..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~-~~~~----~~~~~---~------------~-~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD-DPRD----RRLAD---P------------D-LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC-CHHH----HHHhh---h------------h-hHHHHHHhhc
Confidence 36899999999999999999988755 22334444211 1100 00000 0 0 1233333344
Q ss_pred CceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhc------CCCceEecCCCChHHH
Q 045202 122 RKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNC------GVDEKYQMKELVHADA 183 (887)
Q Consensus 122 ~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~------~~~~~~~v~~L~~~~a 183 (887)
.++.+|+||+|.....|......+-..++..+|++|+......... |....+++.+|+..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 4778899999998888877766665555678999999987776431 2235688999988774
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=2.2e-06 Score=99.10 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=113.9
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--cceEEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--SAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...+++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.+... ... ...+.-+..
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-----------~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-----------QPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-----------CCCcccHHH
Confidence 4456789999999999999988543 23566799999999999999988865311 100 000000111
Q ss_pred HHHHHHHhcCC-CCCCCcccchHHHHHh--------hCCceEEEEEecCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh
Q 045202 93 QQLLSTLLNDG-NVKSFPNIGLNFQSKR--------LTRKKVLIVFYDVNHPR--QIEFLVGRLDLFASGSRIIITTRDR 161 (887)
Q Consensus 93 ~~il~~l~~~~-~~~~~~~~~~~~~~~~--------l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~ 161 (887)
+.+...-...- ........+.+.+++. ..++.-++|||+++... .+..|+..+.......++|+||++.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 11110000000 0000000111111111 12345578899998654 3777777665555678888888875
Q ss_pred hhhh-h-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh-HHHHHHH
Q 045202 162 QLLT-N-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP-LALKVWH 223 (887)
Q Consensus 162 ~v~~-~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg 223 (887)
+-.. . ......++++.++.++..+.+.+.+-.... .--.+..+.|++.++|.. -|+..+-
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5432 2 123468999999999999988876632221 223466778889998865 4554433
No 64
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.7e-06 Score=99.20 Aligned_cols=185 Identities=14% Similarity=0.141 Sum_probs=113.9
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-c-ce-EEEccc-cH----------
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-S-AG-SYFANN-VR---------- 80 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f-~~-~~~~~~-~~---------- 80 (887)
|...+++||-+.-++.|.+++..+. =...+.++|..|+||||+|+.+.+.+... . .. .|.... ..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 3456789999999999999887542 23456899999999999999999876432 1 00 011000 00
Q ss_pred ---HHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEE
Q 045202 81 ---EAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRII 155 (887)
Q Consensus 81 ---~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIi 155 (887)
..+...++..+ +++...+. .....+++-++|||+++.. ..++.|+..+.......++|
T Consensus 91 iEidAas~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 00001111111 22222111 0112467779999999754 55777777776555677777
Q ss_pred EEeCChh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 156 ITTRDRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 156 iTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
++|.+.+ +.... .....|+++.++.++..+.+.+.+-... ..-..+..+.|++.++|.|--+
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 7666544 33222 2347899999999999988877552211 1223456788999999988533
No 65
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.42 E-value=2.3e-06 Score=94.48 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=108.1
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-ce-EEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-AG-SYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...++++|++..++++..++..+ ....+.++|.+|+||||+|+++.+.+..+. .. ...+. ..+.... ....+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhh
Confidence 444578999999999999988743 334578999999999999999998764332 21 22331 1111000 000000
Q ss_pred H--HHHHHHhcCCCCCCCcccchHHHHH----h-----hCCceEEEEEecCCCHH--HHHHHhcCCCCCCCCcEEEEEeC
Q 045202 93 Q--QLLSTLLNDGNVKSFPNIGLNFQSK----R-----LTRKKVLIVFYDVNHPR--QIEFLVGRLDLFASGSRIIITTR 159 (887)
Q Consensus 93 ~--~il~~l~~~~~~~~~~~~~~~~~~~----~-----l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR 159 (887)
. .... ..... .... ......+++ . ..+.+-+||+||++... ..+.+...+......+++|+||.
T Consensus 87 ~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 87 EDPRFAH-FLGTD-KRIR-SSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred cCcchhh-hhhhh-hhhc-cchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 0 0000 00000 0000 000111111 1 11334589999997542 23444443333345677888775
Q ss_pred Chh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 160 DRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 160 ~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
... +.... .....+++.+++.++..+.+...+-..... --.+....++++++|.+-.+.
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 432 22222 223578899999999988888766332211 224577788889988765543
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6e-06 Score=94.61 Aligned_cols=192 Identities=14% Similarity=0.097 Sum_probs=112.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+.+.+-... +... ...+.-.-.+.
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~----~~~~-----~pCg~C~sC~~ 80 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCET----GVTS-----TPCEVCATCKA 80 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCc----CCCC-----CCCccCHHHHH
Confidence 3456799999999999999998543 236789999999999999999988653211 1100 00000000000
Q ss_pred HHHHHhcCCCC---CCCcccchHHHHHh--------hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh
Q 045202 95 LLSTLLNDGNV---KSFPNIGLNFQSKR--------LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR 161 (887)
Q Consensus 95 il~~l~~~~~~---~~~~~~~~~~~~~~--------l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 161 (887)
+...- ..+. ........+.+++. ..+++-++|+|+|+.. ...+.+...+.....+.++|++|.+.
T Consensus 81 I~~g~--hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 81 VNEGR--FIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred HhcCC--CCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 00000 0000 00000111111111 1356668999999864 45666766665555677888888764
Q ss_pred hhhh-h-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 162 QLLT-N-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 162 ~v~~-~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
.-.. . ......++++.++.++..+.+.+.+-+.+. .--.+....|++.++|.+-.+.
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 4321 1 233478999999999998888776633221 2234566788899999775443
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=98.39 E-value=3.5e-06 Score=97.04 Aligned_cols=180 Identities=16% Similarity=0.154 Sum_probs=109.2
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCC--CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGS--TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
.|...++++|.+..++++..|+..-. ...+.+.|+|++|+||||+|+++.+++. ++... + ..+.... .+.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ie-l----nasd~r~-~~~ 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIE-L----NASDQRT-ADV 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEE-E----ccccccc-HHH
Confidence 35556789999999999999987422 2267899999999999999999999864 22221 2 1122111 222
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH------HHHHHhcCCCCCCCCcEEEEEeCChhhh-
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR------QIEFLVGRLDLFASGSRIIITTRDRQLL- 164 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~------~~~~l~~~~~~~~~gsrIiiTTR~~~v~- 164 (887)
.++++....... .....++-+||+|+++... .++.+...+. ..+..||+|+.+..-.
T Consensus 81 i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 81 IERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 233332221110 0111367799999997642 2444443333 2344566666543211
Q ss_pred h-h-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 165 T-N-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 165 ~-~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
. . ......++++.++.++....+...+....... -.+....|++.++|..-++
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSA 199 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 1 1 12346789999999998888877664333221 2467788888998876544
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.37 E-value=4e-06 Score=91.32 Aligned_cols=184 Identities=14% Similarity=0.184 Sum_probs=108.8
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh-cccceEEEccccHHHHhcCCHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~s~~~~~~~l~~ 93 (887)
|...++++|.+..++.|..++..+ +..-+.+||++|+||||+|+++.+.+. ..|...+.-- ..+...+...+ +
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el---n~sd~~~~~~v-r 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL---NASDDRGIDVV-R 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee---cccccccHHHH-H
Confidence 455678999998888888887743 334467999999999999999998763 2332211110 11222233322 2
Q ss_pred HHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhc-CC
Q 045202 94 QLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR-QLLTNC-GV 169 (887)
Q Consensus 94 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~ 169 (887)
+.+......... .-.++.-++|+|+++.. ...+.+...+......+++|+++... .+.... ..
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222221111000 00234668999999864 23444444444445667888777543 221111 12
Q ss_pred CceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 170 DEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 170 ~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
...++++.+++++..+.+.+.+-..+... -.+..+.+++.++|..-.+
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 35899999999999888887763322211 2456788889999876443
No 69
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.37 E-value=3.6e-06 Score=99.89 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=103.1
Q ss_pred CCCCCCcccccccHH---HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMK---EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||.+..+. .+.+++.. .....+.+||++|+||||+|+++++....+|. .+. .. ..++.++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~--~~~i~di 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AV--LAGVKDL 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hh--hhhhHHH
Confidence 445568999988774 46666653 34556789999999999999999998766552 221 11 1122222
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHh--hCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEE--eCChh--h
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKR--LTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIIT--TRDRQ--L 163 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~--l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiT--TR~~~--v 163 (887)
++++.. ..+. ..+++.++||||++. ..+.+.+.... ..|+.++|+ |.+.. +
T Consensus 94 -r~~i~~-----------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 94 -RAEVDR-----------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEV 152 (725)
T ss_pred -HHHHHH-----------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhh
Confidence 111111 1111 124677999999974 45566666543 346666653 44432 1
Q ss_pred hhhc-CCCceEecCCCChHHHHHHHHHhhcCC-----CCCCccHHHHHHHHHHhhCCChHH
Q 045202 164 LTNC-GVDEKYQMKELVHADALKLFSRHAFGG-----DHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 164 ~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~-----~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
.... .....+++++++.++..+++.+.+-.. .....--.+..+.+++++.|.--.
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 1111 224689999999999999988765310 111122345667888888887533
No 70
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.35 E-value=6e-07 Score=89.69 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=35.4
Q ss_pred CcccccccHHHHHHhHhc-CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 20 DLVGVELPMKEIESLLRS-GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.||||+++++++...+.. .....+.+.|+|.+|+|||+|+++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999952 23456899999999999999999999987666
No 71
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=2.2e-08 Score=111.79 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=76.8
Q ss_pred CceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCC
Q 045202 534 LDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGN 613 (887)
Q Consensus 534 L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n 613 (887)
|.+.+.+.|.+..+-.++.-++.|+.|+|+.|++.... .+..++.|++|||++|.+..+|..-..-..|+.|.|++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 55566666777666667777777777777777765433 356677777777777777766643222223777777777
Q ss_pred CCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCC
Q 045202 614 NFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPN 668 (887)
Q Consensus 614 ~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~ 668 (887)
.++++- .+.+|.+|+.||+++|-.. .-.++-+- ..+.+|..|.|.+|.+--
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyNll~-~hseL~pL--wsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYNLLS-EHSELEPL--WSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHhhhh-cchhhhHH--HHHHHHHHHhhcCCcccc
Confidence 777665 5667777777777776321 12222110 034455666666665543
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=2.5e-06 Score=92.82 Aligned_cols=113 Identities=27% Similarity=0.448 Sum_probs=63.1
Q ss_pred CCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccC---ccCCccccCCCCCCEE
Q 045202 484 SKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAI---TEVPPSIVRLKRVRGI 560 (887)
Q Consensus 484 ~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i---~~lp~~l~~l~~L~~L 560 (887)
.+|+.|.+++|..+..+|..+ .++|++|.+++|..+..+|. +|+.|++.++.. ..+|+ +|+.|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L 137 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPN------GLTSL 137 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccccCcc------hHhhe
Confidence 357777777777777777654 25777777777755555554 355666665543 34444 34455
Q ss_pred Eccc-cCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCC
Q 045202 561 YLGR-NRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNN 614 (887)
Q Consensus 561 ~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~ 614 (887)
.+.. +......++.. -.++|++|++++|....+|..+. .+|+.|+++.+.
T Consensus 138 ~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 138 SINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 5522 21111111110 11467777777777665554332 577777776653
No 73
>PRK08727 hypothetical protein; Validated
Probab=98.34 E-value=1.2e-05 Score=83.20 Aligned_cols=170 Identities=15% Similarity=0.098 Sum_probs=99.7
Q ss_pred CCCcccccc-cHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHH
Q 045202 18 TNDLVGVEL-PMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLL 96 (887)
Q Consensus 18 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il 96 (887)
.++||+... .+..+..+.. + .....+.|+|..|+|||+||+++++....+.....|+.. .+....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~----------~~~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL----------QAAAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH----------HHhhhhHH
Confidence 455665544 3344444332 2 223569999999999999999999987766555667631 11111111
Q ss_pred HHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH---HHHH-HHhcCCCC-CCCCcEEEEEeCCh---------h
Q 045202 97 STLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP---RQIE-FLVGRLDL-FASGSRIIITTRDR---------Q 162 (887)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~---~~~~-~l~~~~~~-~~~gsrIiiTTR~~---------~ 162 (887)
. ..+.+ .+.-+||+||++.. ..|+ .+...+.. ...|..||+|++.. .
T Consensus 86 ~------------------~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 86 D------------------ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred H------------------HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 0 11111 12248999999743 2232 22211111 13466799999842 2
Q ss_pred hhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 163 LLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 163 v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
+.........+++++++.++-.+++.+++....- .--.+...-+++.+.|-.-++.
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHH
Confidence 2222233568999999999999999987754322 1224567778888887665553
No 74
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=7.6e-06 Score=93.60 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=113.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh--cccceEEEccccH-HHHhc--CCHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS--RHSAGSYFANNVR-EAEET--GRLG 89 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~-~~s~~--~~~~ 89 (887)
|...+++||-+..++.|..++..+. -...+.++|++|+||||+|+++++.+. ..+...||..... .+... .++.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 4456789999988888998887543 235679999999999999999998763 2233334431100 00000 0000
Q ss_pred HHHHHHHHHHhcCCCCCCCcccchHHHHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-h
Q 045202 90 DLRQQLLSTLLNDGNVKSFPNIGLNFQSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRD-R 161 (887)
Q Consensus 90 ~l~~~il~~l~~~~~~~~~~~~~~~~~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~ 161 (887)
. +.... .... ..++.+++. ..+++-++|+|+++.. +.++.+...+........+|++|.. .
T Consensus 89 e--------l~~~~--~~~v-d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 89 E--------IDAAS--NNSV-EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred E--------ecccc--cCCH-HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 0 00000 0000 001112211 2345668999999854 4577777766555556666666544 3
Q ss_pred hhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 162 QLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 162 ~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
.+.... .....+++..++.++..+.+.+.+-..... --.+....|++.++|.+--+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 333222 234689999999999999998877433322 13456788999999988544
No 75
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=8.8e-06 Score=93.20 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=111.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc---------------------ceE
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS---------------------AGS 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~ 73 (887)
|...+++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.+.... ...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 3456789999999999999887542 235678999999999999999998653211 111
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~g 151 (887)
.++. .....++.++ +++++.+.. .-..+++-++|+|+++.. ..++.|...+......
T Consensus 91 ieid----aas~~gvd~i-r~ii~~~~~----------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID----AASRTGVEET-KEILDNIQY----------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee----cccccCHHHH-HHHHHHHHh----------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1110 0011122211 112211100 112356679999999754 4577777776655566
Q ss_pred cEEEEEeCChh-hhhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH-HHHHH
Q 045202 152 SRIIITTRDRQ-LLTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL-ALKVW 222 (887)
Q Consensus 152 srIiiTTR~~~-v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 222 (887)
+++|++|.+.+ +... ......++++.++.++..+.+.+.+-..+ ..--.+....+++.++|.+- |+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776665543 3322 22347899999999998877776542211 12234556788899999664 44333
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=5.8e-06 Score=94.49 Aligned_cols=197 Identities=11% Similarity=0.090 Sum_probs=112.8
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-ceEEEccccHHHHhcCCHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-AGSYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~s~~~~~~~l~~ 93 (887)
|...+++||-+.-++.|.+++..+. -.+.+.++|..|+||||+|+.+.+.+-..- +..--+. +...+.-.-.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~ 85 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACT 85 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHH
Confidence 4456799999999999999998543 235678999999999999999988653210 0000000 00000001111
Q ss_pred HHHHHHhcCCCC---CCCcccchHHHHH---h-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC
Q 045202 94 QLLSTLLNDGNV---KSFPNIGLNFQSK---R-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRD 160 (887)
Q Consensus 94 ~il~~l~~~~~~---~~~~~~~~~~~~~---~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 160 (887)
.|... ...+. ......+.+.+++ . ..++.-++|+|+++.. ..++.|+..+.......++|++|.+
T Consensus 86 ~I~aG--~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 86 EIDAG--RFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred HHHcC--CCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 11000 00000 0000011222221 1 1345668999999864 4577787777655566776666554
Q ss_pred -hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 161 -RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 161 -~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
..+.... .....+.++.++.++..+.+.+.+-.... .-..+..+.|++.++|.|.....
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3443322 22468999999999999888766532221 11234567889999999865443
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.33 E-value=1.2e-05 Score=83.11 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=99.9
Q ss_pred CCCCCCcc-cccccH-HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLV-GVELPM-KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
+...++++ |.+... ..+.++.. .....+.+.|+|..|+|||+||++++++....-....++... . +.
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~---------~~ 82 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-S---------PL 82 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-H---------hH
Confidence 33445655 554444 33444443 223346789999999999999999999764333334455211 1 10
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--HHHHHhcCCCC-CCCCc-EEEEEeCChhhhh---
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--QIEFLVGRLDL-FASGS-RIIITTRDRQLLT--- 165 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~~~~l~~~~~~-~~~gs-rIiiTTR~~~v~~--- 165 (887)
..+ ... ...-+||+||++... +.+.+...+.. ...|. .||+|++......
T Consensus 83 ~~~----------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 83 LAF----------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred HHH----------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 000 011 123368899996432 22223222211 12344 3666666433211
Q ss_pred -----hcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHhH
Q 045202 166 -----NCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVFI 228 (887)
Q Consensus 166 -----~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~ 228 (887)
.+.....++++++++++-.+++.+.+-.... .--.+..+.+++.+.|.+..+..+-..+..
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l~~ 205 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDALDR 205 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 2222368999999998877776654422111 122457778888899999998877766554
No 78
>PRK09087 hypothetical protein; Validated
Probab=98.32 E-value=1.8e-05 Score=81.27 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=89.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT 121 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (887)
.+.+.|||..|+|||+|++++.+... ..++.. ..+...+...+ .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~---------------------~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA---------------------A 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh---------------------h
Confidence 35699999999999999999877532 224421 11111121111 0
Q ss_pred CceEEEEEecCCC----HHHHHHHhcCCCCCCCCcEEEEEeCC---------hhhhhhcCCCceEecCCCChHHHHHHHH
Q 045202 122 RKKVLIVFYDVNH----PRQIEFLVGRLDLFASGSRIIITTRD---------RQLLTNCGVDEKYQMKELVHADALKLFS 188 (887)
Q Consensus 122 ~kk~LiVlDdv~~----~~~~~~l~~~~~~~~~gsrIiiTTR~---------~~v~~~~~~~~~~~v~~L~~~~a~~Lf~ 188 (887)
. -+|++||++. .+.+-.+..... ..|..||+|++. +.+...+....++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 1 2788899953 233333332222 346778888873 3444444556799999999999999999
Q ss_pred HhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHh
Q 045202 189 RHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVF 227 (887)
Q Consensus 189 ~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 227 (887)
+++-... ..--++..+-+++++.|..-++..+-..|.
T Consensus 164 ~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 164 KLFADRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8883321 112256777888888888777765444443
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1e-05 Score=90.17 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=110.5
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-c--eEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-A--GSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-~--~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||-+..+..|..++..+. -...+.++|+.|+||||+|+.+.+.+...- . ..|.. +.+ ..++
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~----C~s----C~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE----CTS----CLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC----CcH----HHHH
Confidence 4556789999999999999888543 124688999999999999999988653221 0 00111 000 0011
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHH---HH-----hhCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCC-
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQ---SK-----RLTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRD- 160 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~---~~-----~l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~- 160 (887)
......++..- ......+.+.+ .+ ...++.-++|+|+++. .+.++.|...+........+|++|.+
T Consensus 85 ~~g~~~dviEI---daas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~ 161 (484)
T PRK14956 85 TKGISSDVLEI---DAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEF 161 (484)
T ss_pred HccCCccceee---chhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCCh
Confidence 10000000000 00000111111 11 1235667899999975 45588887777544455665555554
Q ss_pred hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 161 RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 161 ~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
..+.... ...+.|.+..++.++..+.+.+.+-..+. .--.+....|++.++|.+--
T Consensus 162 ~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 162 HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHHH
Confidence 4443332 23467999999999988888776633221 12345678899999998843
No 80
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.8e-05 Score=86.75 Aligned_cols=204 Identities=14% Similarity=0.148 Sum_probs=125.7
Q ss_pred CCCCCCCcccccccHHHHHHhHhcC--CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceE--EEccccHHHHhcCCHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSG--STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGS--YFANNVREAEETGRLG 89 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~--~~~~~~~~~s~~~~~~ 89 (887)
+...++.+.+||.+++++...|..- .....-+.|+|..|+|||+.++.|.+++....... +++. + -...+..
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c---~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-C---LELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-e---eeCCCHH
Confidence 3445566999999999999887641 11222389999999999999999999876664433 4552 2 2234556
Q ss_pred HHHHHHHHHHhcCCCCCCCcccchHHHHHhh--CCceEEEEEecCCCHHH-----HHHHhcCCCCCCCCcEE--EEEeCC
Q 045202 90 DLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL--TRKKVLIVFYDVNHPRQ-----IEFLVGRLDLFASGSRI--IITTRD 160 (887)
Q Consensus 90 ~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l--~~kk~LiVlDdv~~~~~-----~~~l~~~~~~~~~gsrI--iiTTR~ 160 (887)
++..++++++...........+....+.+.+ .++.++||||+++.... +-.|....... +++| |..+-+
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEecc
Confidence 7888888877632222233444455666666 45889999999975422 22333322222 4443 334444
Q ss_pred hhhhhhcC-------CCceEecCCCChHHHHHHHHHhh---cCCCCCCccHHHHHHHHHHhhCC-ChHHHHHHH
Q 045202 161 RQLLTNCG-------VDEKYQMKELVHADALKLFSRHA---FGGDHPYESHTELTCKTIKYARG-VPLALKVWH 223 (887)
Q Consensus 161 ~~v~~~~~-------~~~~~~v~~L~~~~a~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~G-lPLal~~lg 223 (887)
..+..... ....+..++-+.+|-.+.+...+ |......++..+++..++.+.+| .-.|+..+-
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 44332221 12336778888888888887664 55555556677777777777665 334544433
No 81
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.30 E-value=1.1e-05 Score=89.89 Aligned_cols=172 Identities=15% Similarity=0.141 Sum_probs=99.4
Q ss_pred CCCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhc
Q 045202 17 ETNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEET 85 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~ 85 (887)
..+++.|++..++++.+.+... -...+-|.++|++|+|||++|++++++....|-. +. .......
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~---v~-~~~l~~~ 204 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR---VV-GSELVQK 204 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE---ee-hHHHhHh
Confidence 3357889999999998876421 1234668999999999999999999987654321 10 0011000
Q ss_pred -CC-HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------------HH---HHHHhcCCCC
Q 045202 86 -GR-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------------RQ---IEFLVGRLDL 147 (887)
Q Consensus 86 -~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------------~~---~~~l~~~~~~ 147 (887)
.+ .....+++ +...-...+.+|++||++.. +. +..+......
T Consensus 205 ~~g~~~~~i~~~--------------------f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 205 FIGEGARLVREL--------------------FELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred hccchHHHHHHH--------------------HHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 00 00111111 11112345688999999753 11 2222222222
Q ss_pred C--CCCcEEEEEeCChhhhhh-----cCCCceEecCCCChHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHhhCCCh
Q 045202 148 F--ASGSRIIITTRDRQLLTN-----CGVDEKYQMKELVHADALKLFSRHAFGGDHP-YESHTELTCKTIKYARGVP 216 (887)
Q Consensus 148 ~--~~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~GlP 216 (887)
. ..+.+||.||........ -..+..++++..+.++..++|..++.+...+ ..++ ..+++.+.|.-
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 1 235677777775443221 1235689999999999999999887543322 2333 44555566644
No 82
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=5.3e-07 Score=71.73 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=39.4
Q ss_pred CccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC
Q 045202 462 NIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS 519 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~ 519 (887)
+|++|++++|.+..+|+. |.++++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 566666666777777653 6677777777777776655555666777777777777664
No 83
>PRK05642 DNA replication initiation factor; Validated
Probab=98.29 E-value=2.5e-05 Score=80.87 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=94.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
..+.|||..|+|||.||+++.+++..+-..++|+.. .++... ...+.+.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~----------~~~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL----------AELLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH----------HHHHhh------------------hHHHHHhhhh
Confidence 578999999999999999999877655455667731 111111 0112233332
Q ss_pred ceEEEEEecCCCH---HHHHH-HhcCCCC-CCCCcEEEEEeCChhh-h--------hhcCCCceEecCCCChHHHHHHHH
Q 045202 123 KKVLIVFYDVNHP---RQIEF-LVGRLDL-FASGSRIIITTRDRQL-L--------TNCGVDEKYQMKELVHADALKLFS 188 (887)
Q Consensus 123 kk~LiVlDdv~~~---~~~~~-l~~~~~~-~~~gsrIiiTTR~~~v-~--------~~~~~~~~~~v~~L~~~~a~~Lf~ 188 (887)
-. ++|+||++.. .+|+. +..-+.. ...|.+||+|++...- . .......++++++++.++-.+.+.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 6788999632 23432 2222221 2356788888874322 1 112234679999999999999998
Q ss_pred HhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHh
Q 045202 189 RHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVF 227 (887)
Q Consensus 189 ~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~ 227 (887)
+++....-. --.+...-+++++.|..-++..+-..|.
T Consensus 177 ~ka~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 177 LRASRRGLH--LTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 776443221 1247788888889988777665554444
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.29 E-value=1.3e-05 Score=87.67 Aligned_cols=184 Identities=13% Similarity=0.134 Sum_probs=108.0
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...++++|++..++.+..++..+ ....+.++|..|+||||+|+++.+++........++. + ..+...+...+ ++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~-~~~~~~~~~~~-~~ 87 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-L-NASDERGIDVI-RN 87 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-e-ccccccchHHH-HH
Confidence 445578999999999999998754 3345799999999999999999987643221111221 0 01111111111 11
Q ss_pred HHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhhhh-cCCC
Q 045202 95 LLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR-QLLTN-CGVD 170 (887)
Q Consensus 95 il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~-~~~~ 170 (887)
.+.+...... .....+-+|++|+++.. +..+.+...+......+++|+++... .+... ....
T Consensus 88 ~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 88 KIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 1111111000 00123568999999754 33445555444445567788777432 22111 1123
Q ss_pred ceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 171 EKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 171 ~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
..+++++++.++....+...+-..... -..+....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 478999999999988888776433221 12456778889999987554
No 85
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.2e-05 Score=91.44 Aligned_cols=185 Identities=18% Similarity=0.185 Sum_probs=111.9
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc-------eEEEcc-ccHH-----
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA-------GSYFAN-NVRE----- 81 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~-~~~~----- 81 (887)
|....++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-..-. ..|... ..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 4556789999999999888776442 2357889999999999999999986532110 001110 0000
Q ss_pred --------HHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCC
Q 045202 82 --------AEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASG 151 (887)
Q Consensus 82 --------~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~g 151 (887)
.....++.++.+ +++... ..-..+++-++|+|+++.. ..++.|...+....+.
T Consensus 96 h~Dv~eidaas~~~vd~Ir~-iie~a~----------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRR-IIESAE----------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCcEEEeeccCCCCHHHHHH-HHHHHH----------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 001112222211 111110 0112356678999999864 4577777776655566
Q ss_pred cEEEE-EeCChhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 152 SRIII-TTRDRQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 152 srIii-TTR~~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
+++|+ ||+...+.... .....++++.++.++..+.+.+.+-..+.. --.+....|++.++|.+--+
T Consensus 159 ~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 67665 44444444432 234689999999999999998877433221 12345677888999977444
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.1e-05 Score=91.43 Aligned_cols=185 Identities=16% Similarity=0.137 Sum_probs=107.5
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc----cc-----------------eE
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH----SA-----------------GS 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----f~-----------------~~ 73 (887)
|...+++||.+.-.+.|...+..+. -...+.+||++|+||||+|+.+.+.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 4456789999887777888776432 22567899999999999999998865321 00 01
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~g 151 (887)
..+. .+...++.++. ++...+.. ....+++-++|+|+++.. .+.+.+...+......
T Consensus 89 ~el~----aa~~~gid~iR-~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELD----AASNRGIDEIR-KIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEe----CcccCCHHHHH-HHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 1110 01111222221 12111100 012346679999999754 3466666666544445
Q ss_pred cEEEEEeCC-hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCC-hHHHHHHH
Q 045202 152 SRIIITTRD-RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGV-PLALKVWH 223 (887)
Q Consensus 152 srIiiTTR~-~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~lg 223 (887)
..+|++|.+ ..+.... .....+++++++.++....+.+.+...... --.+....++++++|. +.|+..+.
T Consensus 148 vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred EEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555544 3333322 234689999999999888887776332211 1245667788877654 55555444
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.27 E-value=1.8e-05 Score=81.97 Aligned_cols=174 Identities=13% Similarity=0.177 Sum_probs=100.4
Q ss_pred Cccccccc-HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHH
Q 045202 20 DLVGVELP-MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLST 98 (887)
Q Consensus 20 ~~vGr~~~-~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~ 98 (887)
.++|.+.. +..+..+... ...+.+.|||+.|+|||+||+++++....+-..+.|+.. .... ....+
T Consensus 24 f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~----~~~~---~~~~~---- 90 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL----DKRA---WFVPE---- 90 (235)
T ss_pred cccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH----HHHh---hhhHH----
Confidence 34473332 2334444332 233578999999999999999999977655445556621 1100 00001
Q ss_pred HhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH---HHHHHHh-cCCCC-CCCC-cEEEEEeCCh---------hh
Q 045202 99 LLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP---RQIEFLV-GRLDL-FASG-SRIIITTRDR---------QL 163 (887)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~---~~~~~l~-~~~~~-~~~g-srIiiTTR~~---------~v 163 (887)
+.+.+.. --++++||++.. .+|+... ..+.. ...| .++|+||+.. .+
T Consensus 91 -----------------~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 91 -----------------VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred -----------------HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 1111111 137899999653 3343221 11111 1133 4789998754 22
Q ss_pred hhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHH
Q 045202 164 LTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAV 226 (887)
Q Consensus 164 ~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 226 (887)
...+....+++++++++++-.+++.++|.... -.--++...-+++++.|..-++..+-..+
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 33344557999999999999999988674322 12235677888888888776665444333
No 88
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=4.1e-08 Score=109.60 Aligned_cols=199 Identities=18% Similarity=0.096 Sum_probs=96.0
Q ss_pred cCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccC-CCCccEEEeecCC---------CCCCCc
Q 045202 387 QHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-LGLLKELNLSGCS---------KLKRLP 456 (887)
Q Consensus 387 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~~---------~l~~lp 456 (887)
.-+++++.+.+-+...-.-+. |-....+.+|++|.|.+|.+.. .-.... -..|+.|.-.+.- -.+.+.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence 345566666555543211111 2233567778888888776543 111111 1123333222200 011121
Q ss_pred cccc-CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchh-hcCCCCC
Q 045202 457 EISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEE-LGNLQAL 534 (887)
Q Consensus 457 ~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~-l~~l~~L 534 (887)
.... ..|...+.+.|.+..+..++.-++.|+.|||++|++...- .+..|+.|++|||+.|.+. .+|.. ...+. |
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L 234 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-h
Confidence 1111 4455566666666666666666677777777776654432 4555666666666665432 22321 22222 5
Q ss_pred ceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCC
Q 045202 535 DSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCI 592 (887)
Q Consensus 535 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l 592 (887)
+.|.+++|.++.+- .+.+|++|+.||++.|-+....--..+..+..|+.|+|.+|.+
T Consensus 235 ~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 56666666555442 3455555555555555444332222234445555555555544
No 89
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2e-05 Score=90.31 Aligned_cols=192 Identities=15% Similarity=0.114 Sum_probs=107.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+.+.+...- |... ...+--...+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-----~~Cg~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-----DCCNSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-----CCCcccHHHHH
Confidence 4556799999999999999887543 236788999999999999999988653110 1100 00000111111
Q ss_pred HHHHHhcCCC-CCCCcccchHHHH---H------hhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-h
Q 045202 95 LLSTLLNDGN-VKSFPNIGLNFQS---K------RLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRD-R 161 (887)
Q Consensus 95 il~~l~~~~~-~~~~~~~~~~~~~---~------~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~ 161 (887)
+.......-. .......+.+.++ + ...++| ++|+|+++.. ..+..|...+........+|++|.. .
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~K-VIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYK-VYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcE-EEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 1110000000 0000001111111 1 112344 5999999753 4566666665544456666655543 3
Q ss_pred hhhhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 162 QLLTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 162 ~v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
.+... ......+++..++.++....+...+-..+.. --.+.+..+++.++|.+--+
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 33322 2234689999999999988887765332211 12455778899999976433
No 90
>PTZ00202 tuzin; Provisional
Probab=98.24 E-value=6e-06 Score=89.12 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=104.8
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCC-CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGS-TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
.|.+..+||||+.++.+|...|...+ ...+++.|.|++|+|||||++.+..... ...++.+.+ +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHH
Confidence 36677899999999999999997543 3356999999999999999999987654 225554432 558899
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhh------CCceEEEEEecCCC--HHH-HHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRL------TRKKVLIVFYDVNH--PRQ-IEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l------~~kk~LiVlDdv~~--~~~-~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
+.++.+++.+.. ....+....|.+.+ ++++.+||+-==.. ..- ..+.. .+.....-|.|++----+.+
T Consensus 327 r~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 327 RSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhc
Confidence 999999886322 11123334444333 36777777754322 111 11111 11122355778776655554
Q ss_pred hhhcC---CCceEecCCCChHHHHHHHHHh
Q 045202 164 LTNCG---VDEKYQMKELVHADALKLFSRH 190 (887)
Q Consensus 164 ~~~~~---~~~~~~v~~L~~~~a~~Lf~~~ 190 (887)
-...- .-+.|-++.++.++|.+.-...
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 33221 1358999999999998876543
No 91
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=9.2e-07 Score=70.32 Aligned_cols=61 Identities=23% Similarity=0.310 Sum_probs=35.5
Q ss_pred CCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccC
Q 045202 484 SKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAI 544 (887)
Q Consensus 484 ~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i 544 (887)
++|+.|++++|.+....+..|.++++|++|++++|.+....|..|..+++|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666654444444566666666666666655554455566666666666666543
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.21 E-value=2e-05 Score=80.55 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=102.1
Q ss_pred CCCc-ccccccHH-HHHHhHhcC-CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc--eEEEccccHHHHhcCCHHHHH
Q 045202 18 TNDL-VGVELPMK-EIESLLRSG-STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA--GSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 18 ~~~~-vGr~~~~~-~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~~~~l~ 92 (887)
.+.| +|-..+.. .....+..+ ......+.|||..|+|||.|.+++++++....+ .++++. ..++.
T Consensus 7 Fdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~ 76 (219)
T PF00308_consen 7 FDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFI 76 (219)
T ss_dssp CCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHH
T ss_pred cccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHH
Confidence 3444 57544432 333334333 333456899999999999999999998765433 244552 23444
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH---HHHHH-HhcCCC-CCCCCcEEEEEeCChhh----
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP---RQIEF-LVGRLD-LFASGSRIIITTRDRQL---- 163 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~---~~~~~-l~~~~~-~~~~gsrIiiTTR~~~v---- 163 (887)
+.+...+... ....+++.++.- =++++||++.. ..|+. +..-+. ....|-+||+|++...-
T Consensus 77 ~~~~~~~~~~---------~~~~~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 77 REFADALRDG---------EIEEFKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHHTT---------SHHHHHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHHcc---------cchhhhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 4454444331 144556666643 36789999643 22322 211111 12357789999964321
Q ss_pred -----hhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 164 -----LTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 164 -----~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
.......-++++++++.++..+++.+.|-...-. --+++++-+++.+.+..-.+.-
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHH
Confidence 1222345689999999999999999988433322 2346677777777776655543
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.21 E-value=3.3e-05 Score=85.92 Aligned_cols=184 Identities=13% Similarity=0.138 Sum_probs=112.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc----cce-----------------E
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH----SAG-----------------S 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----f~~-----------------~ 73 (887)
|...+++||.+..++.+.+++..+. -...+-++|.+|+||||+|+.+...+... +.. .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3455789999999999999887543 23567899999999999999998865321 110 1
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~g 151 (887)
.++.. ....+..+ .+++...+.. .-..+++-+||+|+++.. ...+.+...+......
T Consensus 89 ~~~~~----~~~~~~~~-~~~l~~~~~~----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEIDA----ASNNGVDD-IREILDNVKY----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEeec----cccCCHHH-HHHHHHHHhc----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 11100 00011111 1122222110 011234558889999754 4466666666555567
Q ss_pred cEEEEEeCChh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 152 SRIIITTRDRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 152 srIiiTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
+.+|++|.+.. +.... .....+++++++.++..+.+...+-...... -.+.+..+++.++|.|..+...
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHH
Confidence 77777776554 22222 2345789999999998888887663322211 2467778889999988665543
No 94
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=4.4e-06 Score=90.92 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCC
Q 045202 388 HYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKL 452 (887)
Q Consensus 388 ~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l 452 (887)
.+.+++.|++++| .+..+|. -..+|+.|.+++|..+..+|..+ .++|++|++++|..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEI 107 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccc
Confidence 3455555555544 2333321 11234444444444444444322 234444444444333
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=1.3e-05 Score=92.74 Aligned_cols=194 Identities=15% Similarity=0.110 Sum_probs=108.5
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||.+..++.|..++..+. -.+.+.++|..|+||||+|+.+.+.+-..-.. -+. ..+.....+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~--------pCg~C~sCr~ 81 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGE--------PCGVCQSCTQ 81 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCC--------CCcccHHHHH
Confidence 4456799999999999999988543 23578999999999999999998854321100 000 0000000000
Q ss_pred HHHHHhcCC-CCCCCcccchHHHHHh--------hCCceEEEEEecCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-
Q 045202 95 LLSTLLNDG-NVKSFPNIGLNFQSKR--------LTRKKVLIVFYDVNHPR--QIEFLVGRLDLFASGSRIIITTRDRQ- 162 (887)
Q Consensus 95 il~~l~~~~-~~~~~~~~~~~~~~~~--------l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~- 162 (887)
+...-...- ........+.+.+++. ..+++-++|+|+++... ....|...+.......++|++|.+..
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 000000000 0000000111112111 12456689999998643 35555555544445677777776543
Q ss_pred hhhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 163 LLTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 163 v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
+... .+....++++.++.++..+.+.+.+-+.+. .-..+....|++.++|.+.-+.
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHH
Confidence 2211 122357888899999998888776633221 1224567889999999885544
No 96
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=2.4e-05 Score=91.12 Aligned_cols=191 Identities=13% Similarity=0.069 Sum_probs=111.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+.+.+-.... .. ....+.-...++
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~pCg~C~~C~~ 81 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATPCGECDNCRE 81 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCCCCCCHHHHH
Confidence 4556899999999999999887543 2355789999999999999999886432110 00 000111111111
Q ss_pred HHHH-------HhcCCCCCCCcccchHHHHH-----hhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC
Q 045202 95 LLST-------LLNDGNVKSFPNIGLNFQSK-----RLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRD 160 (887)
Q Consensus 95 il~~-------l~~~~~~~~~~~~~~~~~~~-----~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~ 160 (887)
+... +.... ....+. ++.+.+ -..+++-++|+|+++.. ...+.|...+.......++|++|.+
T Consensus 82 i~~g~~~D~ieidaas--~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 82 IEQGRFVDLIEIDAAS--RTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred HHcCCCCCceeecccc--cCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 1100 00000 000000 111111 12456678999999754 4577777666555566677766665
Q ss_pred hh-hhhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 161 RQ-LLTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 161 ~~-v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
.+ +... ......|.++.++.++..+.+.+.+-.... ....+....|++.++|.+--+.
T Consensus 159 ~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 159 PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 44 3322 223578999999999999888776522221 1223556788899999885443
No 97
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.18 E-value=1.8e-05 Score=93.19 Aligned_cols=206 Identities=16% Similarity=0.096 Sum_probs=113.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc--cc---ceEEEccccHHHHhcCCHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR--HS---AGSYFANNVREAEETGRLG 89 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~f---~~~~~~~~~~~~s~~~~~~ 89 (887)
|...++++|.+..++++.+.+... ....+.|+|++|+||||+|+.+++..+. .+ ....|+..- +..-..+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~-~~~l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD-GTTLRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe-chhccCCHH
Confidence 445568999999999888777533 3457999999999999999999885431 11 112232110 100011111
Q ss_pred HHHHHH---------------HHHHhcC----------CCC-------CCCcccchHHHHHhhCCceEEEEEecCCCH--
Q 045202 90 DLRQQL---------------LSTLLND----------GNV-------KSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-- 135 (887)
Q Consensus 90 ~l~~~i---------------l~~l~~~----------~~~-------~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-- 135 (887)
.+...+ +...... ..+ ..-.......+.+.+..+++.++-|+.|..
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111111 1110000 000 001112345566677778888887766543
Q ss_pred HHHHHHhcCCCCCCCCcEEEE--EeCChhhhh-hc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHh
Q 045202 136 RQIEFLVGRLDLFASGSRIII--TTRDRQLLT-NC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKY 211 (887)
Q Consensus 136 ~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~-~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~ 211 (887)
..|+.+...+....+...|++ ||++..... .. .....+.+.+++.+|.++++.+.+-..... --.+..+.|.++
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~--ls~eal~~L~~y 384 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH--LAAGVEELIARY 384 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHC
Confidence 336666555554445555555 666543211 11 122467889999999999999876322111 114556666677
Q ss_pred hCCChHHHHHHHHH
Q 045202 212 ARGVPLALKVWHQA 225 (887)
Q Consensus 212 ~~GlPLal~~lg~~ 225 (887)
+..-+-|+..++.+
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 66556777766644
No 98
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.6e-05 Score=87.01 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=111.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc---------------------cceE
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH---------------------SAGS 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~ 73 (887)
|...+++||-+.-++.|...+..+. -.+.+.++|+.|+||||+|+.+...+--. +.-.
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 4456799999988888888887543 23578899999999999999988753211 1111
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~g 151 (887)
..+ ..+...++.++. ++++.... .-..+++-++|+|+++.. ...+.|...+....+.
T Consensus 88 ~ei----daas~~~vddIR-~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEI----DAASNTSVDDIK-VILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEE----ecccCCCHHHHH-HHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 122 111122222221 22221110 001245668999999754 4467777766655667
Q ss_pred cEEEEEeCC-hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 152 SRIIITTRD-RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 152 srIiiTTR~-~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
+++|++|.+ ..+.... .....++++.++.++..+.+.+.+-..+. .--.+..+.|++.++|.+-.+
T Consensus 147 v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 147 VKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 777766643 4444332 23468999999999998888877643222 122455678889999977543
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.7e-05 Score=83.15 Aligned_cols=197 Identities=17% Similarity=0.140 Sum_probs=115.2
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc----cceEEEccccHHHHhcCCHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH----SAGSYFANNVREAEETGRLG 89 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~s~~~~~~ 89 (887)
.|...+.++|-+...+.+...+..+. -...+.|+|..|+||||+|+.+.+.+-.+ +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 56677899999999999999887543 33578999999999999999998875432 1111000 001111
Q ss_pred HHHHHHHHH-------HhcC---CCC----CCCcccchHHHHHhh-----CCceEEEEEecCCCH--HHHHHHhcCCCCC
Q 045202 90 DLRQQLLST-------LLND---GNV----KSFPNIGLNFQSKRL-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLF 148 (887)
Q Consensus 90 ~l~~~il~~-------l~~~---~~~----~~~~~~~~~~~~~~l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~ 148 (887)
...+.+... +..+ ..+ ....++ +..+.+.+ .+++-++|+|+++.. ...+.|...+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 122222211 0000 000 011111 22233333 345668999999854 3355565555444
Q ss_pred CCCcEEEEEeCCh-hhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 149 ASGSRIIITTRDR-QLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 149 ~~gsrIiiTTR~~-~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
.....+|++|... .+.... .....+++.+++.++..+++...+... . -..+....+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~--~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ--G--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc--C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555555555443 333322 234699999999999999998743211 1 113456788999999997654443
No 100
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.9e-05 Score=83.48 Aligned_cols=201 Identities=13% Similarity=0.055 Sum_probs=113.5
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc-c-cceEEEccccHHHHhcCCHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR-H-SAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~-f~~~~~~~~~~~~s~~~~~~~l 91 (887)
.|...++++|-+...+.+.+.+..+. -...+.++|+.|+||||+|.++...+-. . .......... ......+....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~-~~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP-TSLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc-ccccCCCCChH
Confidence 45666889999999899999888543 2356889999999999999998886521 1 1100000000 00000000011
Q ss_pred HHHHHHHH-------hc---CCC----CCCCcccchHHHHHhh-----CCceEEEEEecCCCH--HHHHHHhcCCCCCCC
Q 045202 92 RQQLLSTL-------LN---DGN----VKSFPNIGLNFQSKRL-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLFAS 150 (887)
Q Consensus 92 ~~~il~~l-------~~---~~~----~~~~~~~~~~~~~~~l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~ 150 (887)
.+.+.... .. +.. .....++ ++.+.+.+ .+.+.++|+||++.. .....|...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111100 00 000 0011111 22233333 245678999999754 445566655554446
Q ss_pred CcEEEEEeCChhh-hhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 151 GSRIIITTRDRQL-LTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 151 gsrIiiTTR~~~v-~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
++.+|++|.+.+- .... ...+.+.+.+++.++..+++..... .. . .+....+++.++|.|+....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~--~~---~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP--DL---P-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc--cC---C-HHHHHHHHHHcCCCHHHHHHHh
Confidence 6777777776543 2222 2357899999999999999987541 11 1 1222678899999998665443
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=5.5e-05 Score=83.85 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=108.0
Q ss_pred CCCcccccccHHHHHHhHhcCCC--------CeeEEEEEcCCCcchHHHHHHHHHHHhcccc------------------
Q 045202 18 TNDLVGVELPMKEIESLLRSGST--------NVCTLGIWGIGGIGKTTIAGAIFNKISRHSA------------------ 71 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~------------------ 71 (887)
.++++|-+.-++.|..++..+.. -.+.+.++|+.|+||||+|+.+...+-....
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 45789999999999999986431 2467889999999999999999875432211
Q ss_pred --eEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCC
Q 045202 72 --GSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDL 147 (887)
Q Consensus 72 --~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~ 147 (887)
-..++. ......++.++ +++.+.+.. .-..+++-++|+|+++.. .....|...+..
T Consensus 84 hpD~~~i~---~~~~~i~i~~i-R~l~~~~~~----------------~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 84 HPDVRVVA---PEGLSIGVDEV-RELVTIAAR----------------RPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred CCCEEEec---cccccCCHHHH-HHHHHHHHh----------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 011110 00001111111 112111111 001234457788999754 335556665555
Q ss_pred CCCCcEEEEEeCCh-hhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 148 FASGSRIIITTRDR-QLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 148 ~~~gsrIiiTTR~~-~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
..++..+|++|.+. .+.... .....+.++.++.++..+.+.... + . ..+.+..++..++|.|.....+
T Consensus 144 p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 55677777777664 333332 234789999999999998887432 1 1 1355778899999999765444
No 102
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.1e-05 Score=88.23 Aligned_cols=193 Identities=12% Similarity=0.135 Sum_probs=110.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc----cceEEEccccHHHHhcCCHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH----SAGSYFANNVREAEETGRLGD 90 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~s~~~~~~~ 90 (887)
|...+++||-+.-++.|.+++..+. -...+.++|..|+||||+|+.+.+.+-.. ..+... ...+.-.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~ 82 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQ 82 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccH
Confidence 3456789998888888999888543 23567899999999999999997754210 000000 0011111
Q ss_pred HHHHHHHHHhcCCCC---CCCcccchHHHHHhh--------CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEE
Q 045202 91 LRQQLLSTLLNDGNV---KSFPNIGLNFQSKRL--------TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIIT 157 (887)
Q Consensus 91 l~~~il~~l~~~~~~---~~~~~~~~~~~~~~l--------~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiT 157 (887)
..+.+.. +...+. ......+.+.+++.+ .++.-++|+|+|+.. ..++.+...+.......++|++
T Consensus 83 ~C~~i~~--g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 83 ACRDIDS--GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred HHHHHHc--CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 1111100 000000 000011122222221 234558899999854 4577777776655566677766
Q ss_pred eCC-hhhhhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 158 TRD-RQLLTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 158 TR~-~~v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
|.+ ..+... ......++++.++.++..+.+.+.+-..+.. -..+....+++.++|.+--+.
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 654 333322 2234789999999999988887766332221 123567788899999775544
No 103
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.2e-05 Score=88.80 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=109.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc---------------------cceE
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH---------------------SAGS 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~ 73 (887)
|...+++||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.+-.. |.-.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4456789999999999999997543 23467899999999999999998854211 1111
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~g 151 (887)
..+ ..+...++.++ +++++.+... -..++.-++|+|+|+.. ...+.+...+......
T Consensus 91 ~ei----daas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEV----DAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEE----cccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 111 11112222222 1222221110 11245567899999853 4567676666555567
Q ss_pred cEEEEEeCChh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 152 SRIIITTRDRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 152 srIiiTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
+++|++|.+.+ +.... .....++++.++.++..+.+.+.+-..+.. -..+....+++.++|.+--+.
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 87887765543 22221 223678999999988777665554222211 123456778889999875543
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=2.9e-05 Score=87.06 Aligned_cols=199 Identities=12% Similarity=0.097 Sum_probs=111.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--cceEEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--SAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...++++|-+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.+... +....|.... ....+.-...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHH
Confidence 4456799999988888998887542 23468899999999999999998876321 1111111000 0001111111
Q ss_pred HHHHHHHhc-----CCCCCCCcccchHHHHHhh-----CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-
Q 045202 93 QQLLSTLLN-----DGNVKSFPNIGLNFQSKRL-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTR- 159 (887)
Q Consensus 93 ~~il~~l~~-----~~~~~~~~~~~~~~~~~~l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR- 159 (887)
+++...... ........++ +..+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++|.
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111110000 0000000001 11112222 345668899999754 457777777665556777766654
Q ss_pred Chhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 160 DRQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 160 ~~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
...+.... .....+++++++.++..+.+...+-... ..-..+.+..++++++|.+--+.
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 34443322 1235789999999998887776652211 11234677888999999775443
No 105
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=2.8e-06 Score=85.88 Aligned_cols=202 Identities=15% Similarity=0.092 Sum_probs=124.4
Q ss_pred CCccEEEccCCCCCC---CCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCC-CCCchhhcCCCCCce
Q 045202 461 GNIETMRLDGTAPEE---LPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNL-QRLPEELGNLQALDS 536 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~ 536 (887)
..++.|+|.+|.|+. +..-+.+++.|++|+|+.|.+...+...-..+.+|++|.|.+..+. ......+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 678888899888874 3344678888899998887754433221135668888888775432 222344566777777
Q ss_pred eeccCccCccCCc---cccC-CCCCCEEEccccCCCcc-cccccccCCCcccEEecccCCCCCcc--ccccCCCCCcEEE
Q 045202 537 LHAVGTAITEVPP---SIVR-LKRVRGIYLGRNRGLSL-PITFSVDGLQNLLDLSLNDCCIMELP--ESLGLLSSVRELH 609 (887)
Q Consensus 537 L~L~~n~i~~lp~---~l~~-l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~ 609 (887)
|.++.|++..+-. .+.. -+.+++|++..|..... .......-++++..+-+..|.+.... .....++.+-.|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 7777775442211 1111 12334444322211100 00011234678888888888877533 3556678888999
Q ss_pred cCCCCCcccc--hhhhcCCCccEeeccccccccccCC-Cccccc-ccCccceEeccc
Q 045202 610 LNGNNFERIP--ESIIQLSNLKSLFIRYCERLQFLPK-LPCNLL-VGCASLHGTGII 662 (887)
Q Consensus 610 L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~-lp~~l~-~~~~~L~~L~l~ 662 (887)
|+.|+|.++. ..+.+++.|..|.+++++....+.. .+.-+. +.+++++.|+=+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 9999998665 4678899999999999987766653 222222 367777776643
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=5.6e-05 Score=85.70 Aligned_cols=188 Identities=13% Similarity=0.156 Sum_probs=108.6
Q ss_pred cccccccH--HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc--ceEEEccccHHHHhcCCHHHHHHHHH
Q 045202 21 LVGVELPM--KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS--AGSYFANNVREAEETGRLGDLRQQLL 96 (887)
Q Consensus 21 ~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~~~~~~~l~~~il 96 (887)
++|...+. .....+..........+.|+|..|+|||+|++++.+.+.... ..++++ +..++...+.
T Consensus 118 v~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv----------~~~~f~~~~~ 187 (450)
T PRK14087 118 VIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM----------SGDEFARKAV 187 (450)
T ss_pred cCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE----------EHHHHHHHHH
Confidence 45765432 223333332222235689999999999999999999765432 233444 2234555555
Q ss_pred HHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCCh-hhh------
Q 045202 97 STLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR---Q-IEFLVGRLDL-FASGSRIIITTRDR-QLL------ 164 (887)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~-~v~------ 164 (887)
..+.... .....+++..+. .-++|+||++... . .+.+..-+.. ...|..||+|+... ...
T Consensus 188 ~~l~~~~-------~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~r 259 (450)
T PRK14087 188 DILQKTH-------KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNR 259 (450)
T ss_pred HHHHHhh-------hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHH
Confidence 5443210 113334444443 3478899996431 2 2233222211 23455788886532 222
Q ss_pred --hhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHH
Q 045202 165 --TNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAV 226 (887)
Q Consensus 165 --~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L 226 (887)
......-++++++++.++-.+++.+++-.......--++...-|++.+.|.|-.+.-+-..+
T Consensus 260 L~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 260 LITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 22233457889999999999999988743221112235778889999999998877555433
No 107
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.09 E-value=0.00011 Score=73.50 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=95.3
Q ss_pred HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc---------------------cceEEEccccHHHHhcCCH
Q 045202 30 EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH---------------------SAGSYFANNVREAEETGRL 88 (887)
Q Consensus 30 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------------f~~~~~~~~~~~~s~~~~~ 88 (887)
.+.+.+..+. -...+.++|+.|+||||+|+.+.+.+... +....++.. .....+.
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~---~~~~~~~ 78 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEP---EGQSIKV 78 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecc---ccCcCCH
Confidence 4555555332 23678899999999999999998876421 111111110 0001111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhhh
Q 045202 89 GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR-QLLT 165 (887)
Q Consensus 89 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~ 165 (887)
.++ +++.+.+.. .-..+.+-+||+|+++.. +.++.+...+....+.+.+|++|++. .+..
T Consensus 79 ~~i-~~i~~~~~~----------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 79 DQV-RELVEFLSR----------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHH-HHHHHHHcc----------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChH
Confidence 111 111211110 011345668999999754 34666776666556677788877654 2222
Q ss_pred hc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 166 NC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 166 ~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
.. .....+++.+++.++..+.+.+. + . ..+.+..+++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~--g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ--G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc--C--C----CHHHHHHHHHHcCCCccc
Confidence 22 23468999999999998888776 1 1 145688999999998853
No 108
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=9.3e-08 Score=100.88 Aligned_cols=254 Identities=18% Similarity=0.193 Sum_probs=121.6
Q ss_pred hhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCc-c--CCCCccEEEeecCCCCCCC--cccc
Q 045202 385 SVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPAR-I--HLGLLKELNLSGCSKLKRL--PEIS 459 (887)
Q Consensus 385 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~--~l~~L~~L~L~~~~~l~~l--p~~~ 459 (887)
...++++++.|.+.++..++...-.++...+++|++|+|..|.......-. + ++++|++|++++|..+..- ....
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 344566666666666665544333444566667777777666544322111 1 3677777777777655431 1111
Q ss_pred -c-CCccEEEccCCCCCCCC---cchhcCCCCcEEecccCCCCccCC--cccCCCCCCcEEEeeCCCCCCCCc--hhhcC
Q 045202 460 -S-GNIETMRLDGTAPEELP---SSIECLSKLLHLDLVDCKTLKSLP--SGLGKLKSLGILSIDGCSNLQRLP--EELGN 530 (887)
Q Consensus 460 -~-~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~lp--~~l~~L~~L~~L~L~~~~~~~~~p--~~l~~ 530 (887)
+ ..++.+.+.|+.=.++- ..-+....+..+++.+|..+.... ..-..+..|+.|..++|...+..+ .-..+
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 1 33444444443211111 011223345555555554333211 112245666777776665543322 11234
Q ss_pred CCCCceeeccCccC-ccCC--ccccCCCCCCEEEcccc-CCCcccccccccCCCcccEEecccCCCCC------cccccc
Q 045202 531 LQALDSLHAVGTAI-TEVP--PSIVRLKRVRGIYLGRN-RGLSLPITFSVDGLQNLLDLSLNDCCIME------LPESLG 600 (887)
Q Consensus 531 l~~L~~L~L~~n~i-~~lp--~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~------lp~~~~ 600 (887)
..+|+.|.+++++- +..- .--.+++.|+.+++... .+....+...-.+++.|+.|.|++|.+.. +...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 55666666665542 2111 11134455666655322 22222233333456666666666664331 122233
Q ss_pred CCCCCcEEEcCCCCCc--ccchhhhcCCCccEeecccccc
Q 045202 601 LLSSVRELHLNGNNFE--RIPESIIQLSNLKSLFIRYCER 638 (887)
Q Consensus 601 ~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~ 638 (887)
.+..|+.|.|+++... ..-+.+..+++|+.++|-+|..
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 4556666666666443 3334455666666666666653
No 109
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.07 E-value=2.5e-05 Score=85.35 Aligned_cols=150 Identities=16% Similarity=0.223 Sum_probs=88.6
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...++++|.+...+++..++..+. -..++.++|.+|+||||+|++++++....| ..+. . +. .....+...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~~~~~i~~~ 87 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-CRIDFVRNR 87 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-ccHHHHHHH
Confidence 5566889999999999999987532 345778899999999999999998764322 1221 1 11 112222211
Q ss_pred HHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH---HHHHHHhcCCCCCCCCcEEEEEeCChhhh-hhc-CC
Q 045202 95 LLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP---RQIEFLVGRLDLFASGSRIIITTRDRQLL-TNC-GV 169 (887)
Q Consensus 95 il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~-~~ 169 (887)
+ ...... ....+.+-+||+||++.. +..+.+...+.....++++|+||...... ... ..
T Consensus 88 l-~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 88 L-TRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred H-HHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1 111110 001134457889999755 22333333334445678899988754321 111 12
Q ss_pred CceEecCCCChHHHHHHHHH
Q 045202 170 DEKYQMKELVHADALKLFSR 189 (887)
Q Consensus 170 ~~~~~v~~L~~~~a~~Lf~~ 189 (887)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 34677778888887766543
No 110
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.06 E-value=2e-05 Score=95.96 Aligned_cols=207 Identities=18% Similarity=0.228 Sum_probs=118.8
Q ss_pred CcccccccHHHHHHhHhcCC-CCeeEEEEEcCCCcchHHHHHHHHHHHhcc--------cc-------eEEEccccHHHH
Q 045202 20 DLVGVELPMKEIESLLRSGS-TNVCTLGIWGIGGIGKTTIAGAIFNKISRH--------SA-------GSYFANNVREAE 83 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------f~-------~~~~~~~~~~~s 83 (887)
.++||+.+++.|...+..-. ....|+.+.|..|||||+++++|...+.++ |+ -..|+..+|+..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 47999999999998887643 345799999999999999999999866544 11 112233333332
Q ss_pred hc------CCHHHHHHHHHHHHhcCCCCCC-------------------Cccc--------chHHHHHhh-CCceEEEEE
Q 045202 84 ET------GRLGDLRQQLLSTLLNDGNVKS-------------------FPNI--------GLNFQSKRL-TRKKVLIVF 129 (887)
Q Consensus 84 ~~------~~~~~l~~~il~~l~~~~~~~~-------------------~~~~--------~~~~~~~~l-~~kk~LiVl 129 (887)
.. ........+++..++....... .... ....+.... +.|++.+|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 21 1111222233333322111100 0000 011122222 456999999
Q ss_pred ecCCCH-----HHHHHHhcCCCC-CCCCcEEE--EEeCCh--hhhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCc
Q 045202 130 YDVNHP-----RQIEFLVGRLDL-FASGSRII--ITTRDR--QLLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYE 199 (887)
Q Consensus 130 Ddv~~~-----~~~~~l~~~~~~-~~~gsrIi--iTTR~~--~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~ 199 (887)
||+.-. +-++.++....- .-.-..|. .|.+.. .+.........+.+.+|+..+..++.....-... .
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---~ 237 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---L 237 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---c
Confidence 999422 224444444320 00011222 233322 1222223457899999999999999977763222 2
Q ss_pred cHHHHHHHHHHhhCCChHHHHHHHHHHhHh
Q 045202 200 SHTELTCKTIKYARGVPLALKVWHQAVFII 229 (887)
Q Consensus 200 ~~~~l~~~i~~~~~GlPLal~~lg~~L~~l 229 (887)
.-.+..+.|+++.+|+|+.+..+-..+.+-
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 335688999999999999998777666553
No 111
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=4e-06 Score=90.27 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=59.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc-ccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCC--c----ccchHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR-HSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSF--P----NIGLNF 115 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~--~----~~~~~~ 115 (887)
...+|+|++|+||||||++||+.+.. +|+.++|+..+++- ...+.++++++...+......... + ....+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999997654 79999999665442 236778888887433222111110 0 011111
Q ss_pred HHHh-hCCceEEEEEecCCCH
Q 045202 116 QSKR-LTRKKVLIVFYDVNHP 135 (887)
Q Consensus 116 ~~~~-l~~kk~LiVlDdv~~~ 135 (887)
.+.. -.+++++|++|++...
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHH
Confidence 1222 3689999999999654
No 112
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.4e-07 Score=95.01 Aligned_cols=170 Identities=25% Similarity=0.309 Sum_probs=92.6
Q ss_pred ccEEEcCCCCCc--cchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCc--c-CCCCccE
Q 045202 369 LVLLKMPHSNIE--QVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPAR--I-HLGLLKE 443 (887)
Q Consensus 369 L~~L~L~~n~i~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~--~-~l~~L~~ 443 (887)
|++|||+...|+ ++..-+..+.+|+.|.+.++..-. +.......-.+|+.|+|+.|.-....... + +++.|..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 555666665555 233445556666666666544211 11222344556666666665533322111 1 3666666
Q ss_pred EEeecCCCCCCCccc----ccCCccEEEccCCCC----CCCCcchhcCCCCcEEecccCCCCcc-CCcccCCCCCCcEEE
Q 045202 444 LNLSGCSKLKRLPEI----SSGNIETMRLDGTAP----EELPSSIECLSKLLHLDLVDCKTLKS-LPSGLGKLKSLGILS 514 (887)
Q Consensus 444 L~L~~~~~l~~lp~~----~~~~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~l~~L~~L~~L~ 514 (887)
|+|++|......-.. ..++|..|+|+|+.= ..+..-...+++|..|||++|..+.. .-..|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666666543322111 115666666665431 12222345688899999998765442 223466788889998
Q ss_pred eeCCCCCCCCchh---hcCCCCCceeeccCc
Q 045202 515 IDGCSNLQRLPEE---LGNLQALDSLHAVGT 542 (887)
Q Consensus 515 L~~~~~~~~~p~~---l~~l~~L~~L~L~~n 542 (887)
++.|.. ..|+. +..+++|.+|+..++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 888864 34543 456667777776654
No 113
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=5.7e-05 Score=87.36 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=108.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc---------------------eE
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA---------------------GS 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~---------------------~~ 73 (887)
|...+++||-+.-++.+..++..+. -...+.++|..|+||||+|+.+...+..... ..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 3456789999999999999888543 2356789999999999999999886532110 01
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--HHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--QIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~~~g 151 (887)
.++. .+...++.+ .+++++.+.. .-..+++-++|+|+++... ..+.+...+......
T Consensus 91 ~ei~----~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVD----AASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEee----ccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1110 000111111 1122221110 0113566789999998653 466666666555566
Q ss_pred cEEEEEeCChh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 152 SRIIITTRDRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 152 srIiiTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
+.+|++|.+++ +.... .....++++.++.++..+.+.+.+-..+. .-..+....+++.++|.+--+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 77777665543 22221 12368899999999988877765522221 122455678889999977533
No 114
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=6.5e-05 Score=87.54 Aligned_cols=197 Identities=15% Similarity=0.178 Sum_probs=112.6
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc----eEEEccccHHHHhcCCHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA----GSYFANNVREAEETGRLGD 90 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~s~~~~~~~ 90 (887)
|...+++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.+-.... +..+- ..+.-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~--------~cg~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID--------LCGVGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc--------cCcccH
Confidence 4556789999999999999988543 2346889999999999999999886532211 00000 000000
Q ss_pred HHHHHHHHHhcCCC-CCCCcccchHHHHHh--------hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEe-
Q 045202 91 LRQQLLSTLLNDGN-VKSFPNIGLNFQSKR--------LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITT- 158 (887)
Q Consensus 91 l~~~il~~l~~~~~-~~~~~~~~~~~~~~~--------l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT- 158 (887)
-.+.+.......-. .......+++.+++. ..+++-++|+|+++.. ...+.|...+......+++|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 11111110000000 000000112222211 1234557899999754 34666766665555677776655
Q ss_pred CChhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 159 RDRQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 159 R~~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
....+.... .....++++.++.++..+.+.+.+-.... .--.+....|++.++|.+.-+..+
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 333443332 23468999999999999888877632221 122366788899999988655433
No 115
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.03 E-value=5.8e-07 Score=80.54 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=73.7
Q ss_pred CceeeccCccCccCCc---cccCCCCCCEEEccccCCCcccccccc-cCCCcccEEecccCCCCCccccccCCCCCcEEE
Q 045202 534 LDSLHAVGTAITEVPP---SIVRLKRVRGIYLGRNRGLSLPITFSV-DGLQNLLDLSLNDCCIMELPESLGLLSSVRELH 609 (887)
Q Consensus 534 L~~L~L~~n~i~~lp~---~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~ 609 (887)
+..++|+++.+-.+++ .+.....|+..+|++|.+.++ |..+ ..++.++.|+|++|.++++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f--p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF--PKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC--CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4445555555544433 233344445555666655432 2222 345578888888888888888888888899999
Q ss_pred cCCCCCcccchhhhcCCCccEeeccccccccccCCCccccc
Q 045202 610 LNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLL 650 (887)
Q Consensus 610 L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~ 650 (887)
++.|.+...|..+..+.+|-.|+..+|. +-++|..++
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na----~~eid~dl~ 143 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENA----RAEIDVDLF 143 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCc----cccCcHHHh
Confidence 9988888888888888888888888775 444554443
No 116
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=9.1e-07 Score=89.34 Aligned_cols=198 Identities=19% Similarity=0.176 Sum_probs=112.7
Q ss_pred CCCCcEEEeeCCCCCC--CCchhhcCCCCCceeeccCccCcc---CCccccCCCCCCEEEccccCCCcccccccc-cCCC
Q 045202 507 LKSLGILSIDGCSNLQ--RLPEELGNLQALDSLHAVGTAITE---VPPSIVRLKRVRGIYLGRNRGLSLPITFSV-DGLQ 580 (887)
Q Consensus 507 L~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~~n~i~~---lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~ 580 (887)
+..++.|.+.+|.+-. ..-..-...+.++.|||.+|.|+. +-..+.+++.|++|+|++|.+.+.. ..+ ....
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLK 121 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCccccc
Confidence 3344455555544321 111112345667777888887773 3345567778888888877755311 001 2345
Q ss_pred cccEEecccCCCCC--ccccccCCCCCcEEEcCCCCCcccc---hh----------hhcCCCccEeeccccccccccCCC
Q 045202 581 NLLDLSLNDCCIME--LPESLGLLSSVRELHLNGNNFERIP---ES----------IIQLSNLKSLFIRYCERLQFLPKL 645 (887)
Q Consensus 581 ~L~~L~Ls~n~l~~--lp~~~~~l~~L~~L~L~~n~l~~lp---~~----------l~~l~~L~~L~L~~c~~l~~lp~l 645 (887)
+|+.|-|.+..+.- ....+..+|.++.|.++.|++..+- .. +...+++..+.++-|+..+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r----- 196 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR----- 196 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-----
Confidence 77777777766652 4455666777777777777444211 11 2233444444444444222
Q ss_pred cccccccCccceEecccCCCCCCCCc-chhhhhcccCcccCCCCCCCcchh-HHHHHhHHHHHHhhhhhhhcCC
Q 045202 646 PCNLLVGCASLHGTGIIRRFIPNSSE-SDFLDLYLSDNFKLDPNDLGGIFK-GALQKIQLLATARLKEAREKIS 717 (887)
Q Consensus 646 p~~l~~~~~~L~~L~l~~N~l~~~~~-~~~~~l~~l~~l~L~~N~l~~i~~-~~~~~l~~L~~l~l~~n~~~~~ 717 (887)
-.+++..+-+..+.+..... ..+...+.+.||+|+.|++..-.. +++.++++|..+++++|.+..+
T Consensus 197 ------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 197 ------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred ------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 23456666666676665432 334446666799999999876532 4566777888888777765543
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.02 E-value=2.9e-05 Score=82.09 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=82.3
Q ss_pred CCcccccccHHHHHHhHhc-------------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc--ceEEEccccHHHH
Q 045202 19 NDLVGVELPMKEIESLLRS-------------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS--AGSYFANNVREAE 83 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~-------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s 83 (887)
..++|.+...++|.++... ......-+.++|++|+||||+|+.+++.+...- ....++. +..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 4689988888776543221 112445688999999999999999988653211 1111221 101
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCC----------HHHHHHHhcCCCCCCCCcE
Q 045202 84 ETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNH----------PRQIEFLVGRLDLFASGSR 153 (887)
Q Consensus 84 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~----------~~~~~~l~~~~~~~~~gsr 153 (887)
.++.. ...++ ........+.+. ..-+|++|+++. .++.+.+..........-.
T Consensus 83 -----~~l~~----~~~g~-----~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~ 145 (261)
T TIGR02881 83 -----ADLVG----EYIGH-----TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFV 145 (261)
T ss_pred -----HHhhh----hhccc-----hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEE
Confidence 01111 10000 000001111111 123889999975 2345556555543333345
Q ss_pred EEEEeCChhhhh------hc--CCCceEecCCCChHHHHHHHHHhhc
Q 045202 154 IIITTRDRQLLT------NC--GVDEKYQMKELVHADALKLFSRHAF 192 (887)
Q Consensus 154 IiiTTR~~~v~~------~~--~~~~~~~v~~L~~~~a~~Lf~~~af 192 (887)
+|+++....... .. .....++++.++.++-.+++.+.+-
T Consensus 146 vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 556654332211 00 1235689999999999999987763
No 118
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.9e-07 Score=94.13 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=51.1
Q ss_pred CCccEEEccCCCCC--CCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCc--hhhcCCCCCce
Q 045202 461 GNIETMRLDGTAPE--ELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLP--EELGNLQALDS 536 (887)
Q Consensus 461 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~ 536 (887)
..|++|+|+++.|+ .+..-+..+.+|+.|.|.++.+-..+-..+.+-.+|+.|++++|+-..... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 34555666555554 344445667777777777766655555566666777777777766443322 23456666666
Q ss_pred eeccCccCc
Q 045202 537 LHAVGTAIT 545 (887)
Q Consensus 537 L~L~~n~i~ 545 (887)
|+++.|.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 666666544
No 119
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.99 E-value=1.5e-06 Score=86.62 Aligned_cols=134 Identities=19% Similarity=0.203 Sum_probs=79.5
Q ss_pred cCCCCCCcEEEeeCCCCCCCCchh----hcCCCCCceeeccCccCccCCc--------------cccCCCCCCEEEcccc
Q 045202 504 LGKLKSLGILSIDGCSNLQRLPEE----LGNLQALDSLHAVGTAITEVPP--------------SIVRLKRVRGIYLGRN 565 (887)
Q Consensus 504 l~~L~~L~~L~L~~~~~~~~~p~~----l~~l~~L~~L~L~~n~i~~lp~--------------~l~~l~~L~~L~L~~n 565 (887)
+-++|.|+..+||.|-+....|+. +..-+.|.+|.+++|.+..+.. -...-+.|++...+.|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 345566666666665555444433 3445566666666665542211 1123467777777777
Q ss_pred CCCccccccc---ccCCCcccEEecccCCCCC------ccccccCCCCCcEEEcCCCCCccc-----chhhhcCCCccEe
Q 045202 566 RGLSLPITFS---VDGLQNLLDLSLNDCCIME------LPESLGLLSSVRELHLNGNNFERI-----PESIIQLSNLKSL 631 (887)
Q Consensus 566 ~~~~~~~~~~---~~~l~~L~~L~Ls~n~l~~------lp~~~~~l~~L~~L~L~~n~l~~l-----p~~l~~l~~L~~L 631 (887)
++..++...+ +..-..|+.+.+..|.|.. +-..+..+.+|+.|+|..|-++.. ...+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 7766543322 2223577888888887763 112345677888888888877632 2334455678888
Q ss_pred eccccc
Q 045202 632 FIRYCE 637 (887)
Q Consensus 632 ~L~~c~ 637 (887)
.+.+|-
T Consensus 248 ~lnDCl 253 (388)
T COG5238 248 RLNDCL 253 (388)
T ss_pred cccchh
Confidence 888885
No 120
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.99 E-value=0.00012 Score=83.90 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=101.1
Q ss_pred cccccccH--HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc--eEEEccccHHHHhcCCHHHHHHHHH
Q 045202 21 LVGVELPM--KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA--GSYFANNVREAEETGRLGDLRQQLL 96 (887)
Q Consensus 21 ~vGr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~~~~l~~~il 96 (887)
++|...+. .....+..........+.|+|..|+|||+||+++.+++..++. ...++. ..++..++.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHH
Confidence 45655543 2333443322223356899999999999999999998877653 234552 123333333
Q ss_pred HHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH---H-HHHHHhcCCCC-CCCCcEEEEEeCChh---------
Q 045202 97 STLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP---R-QIEFLVGRLDL-FASGSRIIITTRDRQ--------- 162 (887)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~---~-~~~~l~~~~~~-~~~gsrIiiTTR~~~--------- 162 (887)
..+... ....+++.++. .-+|||||++.. + ..+.+...+.. ...|..||+|+....
T Consensus 195 ~~~~~~---------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 195 NALRNN---------TMEEFKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHHHcC---------cHHHHHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 333211 12334444443 447889999642 1 11222221111 123456777776431
Q ss_pred hhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 163 LLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 163 v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
+...+.....+++++.+.++-.+++.+.+-... ..--.+...-|++.+.|..-.+.
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHH
Confidence 122233345899999999999999998874321 11224567777777787766554
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00016 Score=83.74 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=108.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||.+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.+...... .+- ..+.-...+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~--------pCg~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGP-TAT--------PCGVCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCC--------cccccHHHHH
Confidence 3456789999999999999988542 23467899999999999999998865421100 000 0000001111
Q ss_pred HHHHHhcCCCC---CCCcccchHHHH---Hh-----hCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCC-
Q 045202 95 LLSTLLNDGNV---KSFPNIGLNFQS---KR-----LTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRD- 160 (887)
Q Consensus 95 il~~l~~~~~~---~~~~~~~~~~~~---~~-----l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~- 160 (887)
+...-....+. ......+++.++ +. ..+++-++|+|+++. ....+.|...+........+|++|.+
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 11000000000 000001122221 11 124556889999974 44577777777655567776665544
Q ss_pred hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH
Q 045202 161 RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL 217 (887)
Q Consensus 161 ~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 217 (887)
..+.... .....|++..++.++..+.+.+.+-..... -..+....|+++++|.+-
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 4443332 235789999999999888887765332221 123456778889999774
No 122
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.99 E-value=4.2e-05 Score=85.51 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=92.5
Q ss_pred CCCCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 16 SETNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
...+++.|.+..+++|.+.+... -...+-+.++|.+|+|||++|++++++....|-...-- ....
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s----eL~~ 255 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS----ELIQ 255 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc----hhhh
Confidence 44467899999999998877521 12345688999999999999999999876665221100 1100
Q ss_pred c-CC-HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----------------HHHHHhcCCC
Q 045202 85 T-GR-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----------------QIEFLVGRLD 146 (887)
Q Consensus 85 ~-~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----------------~~~~l~~~~~ 146 (887)
. .+ .....+. .+.......+.+|+||+++... .+-.+...++
T Consensus 256 k~~Ge~~~~vr~--------------------lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 256 KYLGDGPKLVRE--------------------LFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD 315 (438)
T ss_pred hhcchHHHHHHH--------------------HHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh
Confidence 0 00 0011111 1122223567788889875321 1122222222
Q ss_pred CC--CCCcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcC
Q 045202 147 LF--ASGSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFG 193 (887)
Q Consensus 147 ~~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~ 193 (887)
.+ ..+.+||.||......... ..+..++++..+.++..++|..++-+
T Consensus 316 g~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 316 GFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred hhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 11 2356788888755544321 24678999999999999999988743
No 123
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.98 E-value=3.2e-05 Score=87.70 Aligned_cols=158 Identities=17% Similarity=0.242 Sum_probs=92.0
Q ss_pred CCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-----ceEEEcccc
Q 045202 16 SETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-----AGSYFANNV 79 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~ 79 (887)
...+++.|.+..++++.+.+.. +-...+-+.++|++|+|||++|+++++++...+ ....|+. +
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c
Confidence 3446788999999999887642 112345689999999999999999999876542 2233441 1
Q ss_pred HH--H-HhcCC-HHHHHHHHHHHHhcCCCCCCCcccchHHHHH-hhCCceEEEEEecCCCHH---------H-----HHH
Q 045202 80 RE--A-EETGR-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSK-RLTRKKVLIVFYDVNHPR---------Q-----IEF 140 (887)
Q Consensus 80 ~~--~-s~~~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~-~l~~kk~LiVlDdv~~~~---------~-----~~~ 140 (887)
.. . +...+ .....+.++. ..++ .-.+++++|++|+++..- + +..
T Consensus 258 ~~~eLl~kyvGete~~ir~iF~-----------------~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~ 320 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIFQ-----------------RAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ 320 (512)
T ss_pred cchhhcccccchHHHHHHHHHH-----------------HHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH
Confidence 10 0 00000 0011111111 1111 123578999999997421 1 223
Q ss_pred HhcCCCCCC--CCcEEEEEeCChhhhhh-c----CCCceEecCCCChHHHHHHHHHhh
Q 045202 141 LVGRLDLFA--SGSRIIITTRDRQLLTN-C----GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 141 l~~~~~~~~--~gsrIiiTTR~~~v~~~-~----~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
+...++... .+..||.||........ . ..+..++++..+.++..++|..+.
T Consensus 321 LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 321 LLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 333333222 34445556654443221 1 336679999999999999999886
No 124
>PRK06620 hypothetical protein; Validated
Probab=97.96 E-value=6.7e-05 Score=76.28 Aligned_cols=135 Identities=12% Similarity=0.038 Sum_probs=81.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
+.+.|||++|+|||+||+++.+.... .++... .. .+ +.. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~---~~-------~~------------------------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI---FF-------NE------------------------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh---hh-------ch------------------------hHH-h
Confidence 66999999999999999997665421 333100 00 00 001 1
Q ss_pred ceEEEEEecCCCHHH--HHHHhcCCCCCCCCcEEEEEeCChhh-------hhhcCCCceEecCCCChHHHHHHHHHhhcC
Q 045202 123 KKVLIVFYDVNHPRQ--IEFLVGRLDLFASGSRIIITTRDRQL-------LTNCGVDEKYQMKELVHADALKLFSRHAFG 193 (887)
Q Consensus 123 kk~LiVlDdv~~~~~--~~~l~~~~~~~~~gsrIiiTTR~~~v-------~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~ 193 (887)
..-++++||++...+ +-.+...+. ..|..||+|++.+.. ...+...-+++++.+++++-.+++.+.+-.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 224688899975432 222222211 356789998874322 223334558999999999988888877632
Q ss_pred CCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 194 GDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 194 ~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
.. -.--+++.+-+++++.|.--++.-
T Consensus 163 ~~--l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 163 SS--VTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred cC--CCCCHHHHHHHHHHccCCHHHHHH
Confidence 21 112256777888888877655543
No 125
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.95 E-value=4.7e-06 Score=86.23 Aligned_cols=91 Identities=16% Similarity=0.144 Sum_probs=59.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc-ccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCC------cccchHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR-HSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSF------PNIGLNF 115 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~------~~~~~~~ 115 (887)
..++|.|++|+|||||++.+|+.+.. +|+..+|+..+.+ ...++.++++++...+......... .......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999997643 7999999843322 1257889998884433222111111 0111222
Q ss_pred HHH-hhCCceEEEEEecCCCH
Q 045202 116 QSK-RLTRKKVLIVFYDVNHP 135 (887)
Q Consensus 116 ~~~-~l~~kk~LiVlDdv~~~ 135 (887)
.+. +-.++++++++|++...
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 222 23589999999999654
No 126
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=0.00021 Score=81.08 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=100.1
Q ss_pred cccccccHH--HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc--eEEEccccHHHHhcCCHHHHHHHHH
Q 045202 21 LVGVELPMK--EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA--GSYFANNVREAEETGRLGDLRQQLL 96 (887)
Q Consensus 21 ~vGr~~~~~--~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~~~~l~~~il 96 (887)
++|-..+.. ...++... ......+.|||.+|+|||+||+++.+++..... .+.|+. ..++..++.
T Consensus 108 v~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~ 176 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLV 176 (440)
T ss_pred ccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHH
Confidence 447554432 23333332 222345999999999999999999998766543 345552 123444444
Q ss_pred HHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH---HHH-HHHhcCCCC-CCCCcEEEEEeC-Chhhhhh----
Q 045202 97 STLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP---RQI-EFLVGRLDL-FASGSRIIITTR-DRQLLTN---- 166 (887)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~---~~~-~~l~~~~~~-~~~gsrIiiTTR-~~~v~~~---- 166 (887)
..+... .....++..+.+.-+|++||++.. ..+ +.+...+.. ...|..||+||. .+.-...
T Consensus 177 ~~~~~~---------~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 177 DSMKEG---------KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred HHHhcc---------cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 444221 123344444444558999999743 111 112111110 123457888874 4332221
Q ss_pred ----cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 167 ----CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 167 ----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
....-++++++.+.+.-.+++.+.+-..... --.++...|++++.|.--.+.
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHHH
Confidence 2234588999999999999998887432211 124567777777777654443
No 127
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=8.2e-05 Score=82.99 Aligned_cols=182 Identities=16% Similarity=0.178 Sum_probs=107.8
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--------cceEEEccccHHHHhcC
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--------SAGSYFANNVREAEETG 86 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~s~~~ 86 (887)
|...++++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+++.+.+... |....+- . ......
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l-~~~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--L-DAASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--e-ccccCC
Confidence 4456789999999999999987542 23578899999999999999998865431 2111111 0 001111
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-Chhh
Q 045202 87 RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTR-DRQL 163 (887)
Q Consensus 87 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR-~~~v 163 (887)
++.++. ++++++... -..+++-+||+|+++.. ..++.+...+......+.+|++|. ...+
T Consensus 89 ~~~~i~-~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 89 SVDDIR-NLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CHHHHH-HHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 122221 222221100 11234557999999754 346666554443344556665553 3333
Q ss_pred hhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 164 LTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 164 ~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
... ......++.++++.++..+.+...+-..+.. --.+....++++++|.+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 222 1234589999999999988888777433321 12467778888888866433
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00012 Score=84.61 Aligned_cols=197 Identities=12% Similarity=0.110 Sum_probs=112.6
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.+-.... .. ....+.-...+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~----~~-----~~pCg~C~sC~~ 81 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETA----PT-----GEPCNTCEQCRK 81 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCC----CC-----CCCCcccHHHHH
Confidence 3455788998888888888887442 2357889999999999999999886532110 00 000000111111
Q ss_pred HHHHHhcCCCCC---CCcccchHH---HHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-
Q 045202 95 LLSTLLNDGNVK---SFPNIGLNF---QSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRD- 160 (887)
Q Consensus 95 il~~l~~~~~~~---~~~~~~~~~---~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~- 160 (887)
+.... ..+.. ......++. +++. ..+++-+||+|+++.. +.++.|...+........+|++|.+
T Consensus 82 i~~g~--hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 82 VTQGM--HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HhcCC--CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 11100 00000 000001111 1111 2356678999999754 4466776666544455666666655
Q ss_pred hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh-HHHHHHHHH
Q 045202 161 RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP-LALKVWHQA 225 (887)
Q Consensus 161 ~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~lg~~ 225 (887)
..+.... .....++++.++.++..+.+...+...... -..+.++.|+++++|.+ .|+..+...
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3443322 224688999999999998888766433221 22456788889999965 676666543
No 129
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.94 E-value=0.00013 Score=77.69 Aligned_cols=152 Identities=14% Similarity=0.175 Sum_probs=84.2
Q ss_pred CcccccccHHHHHHhHhc----------C--C-CCeeEEEEEcCCCcchHHHHHHHHHHHhccc--ceEEEccccHHHHh
Q 045202 20 DLVGVELPMKEIESLLRS----------G--S-TNVCTLGIWGIGGIGKTTIAGAIFNKISRHS--AGSYFANNVREAEE 84 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~----------~--~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~ 84 (887)
.++|.+...++|.++... + . ....-+.++|.+|+||||+|+++...+...- ....|+. ++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~ 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH
Confidence 679998888887654221 0 0 1122588999999999999999887654321 1112331 111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-----------HHHHHHhcCCCCCCCCcE
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-----------RQIEFLVGRLDLFASGSR 153 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-----------~~~~~l~~~~~~~~~gsr 153 (887)
.++ ...+.+.. .......+.+. ..-+|+||+++.. +.++.+...+.....+-+
T Consensus 99 ----~~l----~~~~~g~~-----~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 162 (284)
T TIGR02880 99 ----DDL----VGQYIGHT-----APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLV 162 (284)
T ss_pred ----HHH----hHhhcccc-----hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 112 11111110 00111122221 2358889999632 224555555544445667
Q ss_pred EEEEeCChhhhhhc--------CCCceEecCCCChHHHHHHHHHhh
Q 045202 154 IIITTRDRQLLTNC--------GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 154 IiiTTR~~~v~~~~--------~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
||.++......... .....++++.++.+|-.+++...+
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 77776543221111 124679999999999999988876
No 130
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.93 E-value=0.00026 Score=80.08 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=100.3
Q ss_pred cccccccHH--HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc--eEEEccccHHHHhcCCHHHHHHHHH
Q 045202 21 LVGVELPMK--EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA--GSYFANNVREAEETGRLGDLRQQLL 96 (887)
Q Consensus 21 ~vGr~~~~~--~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~~~~~~~~s~~~~~~~l~~~il 96 (887)
++|.+.... .+..+..........+.|+|..|+|||+||+++++++..+.. .++++. ..++..++.
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~ 182 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFV 182 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHH
Confidence 567665532 233333322222356899999999999999999998876543 344552 123333444
Q ss_pred HHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH---H-HHHHhcCCCC-CCCCcEEEEEeCC-hhhh------
Q 045202 97 STLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR---Q-IEFLVGRLDL-FASGSRIIITTRD-RQLL------ 164 (887)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~-~~v~------ 164 (887)
..+... ....+++.++. .-+|||||++... . .+.+...+.. ...|..||+|+.. +...
T Consensus 183 ~~~~~~---------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~ 252 (405)
T TIGR00362 183 NALRNN---------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEER 252 (405)
T ss_pred HHHHcC---------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhh
Confidence 443321 12334444433 2378899997421 1 1222221111 1235567777753 2221
Q ss_pred --hhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 165 --TNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 165 --~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
..+.....+++++.+.++-.+++...+-.... .--++....|++.+.|..-.+.
T Consensus 253 l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 253 LRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred hhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 12222357899999999999999888743222 1225677778888888776544
No 131
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.93 E-value=0.00013 Score=89.09 Aligned_cols=150 Identities=13% Similarity=0.188 Sum_probs=87.0
Q ss_pred CCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc------ceEEEccccHHHH-hcC--
Q 045202 16 SETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS------AGSYFANNVREAE-ETG-- 86 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s-~~~-- 86 (887)
...+.+|||+.++.++...|.....+ -+.++|.+|+||||+|+.+..++.... ...+|..+..... ...
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~--n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQN--NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcC--ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 34467999999999999988754433 356899999999999999999875432 1233332221111 111
Q ss_pred -CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH-------HHH---HHhcCCCCCCCC-cEE
Q 045202 87 -RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR-------QIE---FLVGRLDLFASG-SRI 154 (887)
Q Consensus 87 -~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~-------~~~---~l~~~~~~~~~g-srI 154 (887)
...+-.++++.++ ++ .++++++++|+++... +.+ .+.+.+ ..| -++
T Consensus 262 ge~e~~lk~ii~e~-----------------~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~ 319 (852)
T TIGR03345 262 GEFENRLKSVIDEV-----------------KA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRT 319 (852)
T ss_pred hHHHHHHHHHHHHH-----------------Hh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEE
Confidence 1111222222211 11 2468999999985431 122 232222 233 455
Q ss_pred EEEeCChhhhhhc-------CCCceEecCCCChHHHHHHHHH
Q 045202 155 IITTRDRQLLTNC-------GVDEKYQMKELVHADALKLFSR 189 (887)
Q Consensus 155 iiTTR~~~v~~~~-------~~~~~~~v~~L~~~~a~~Lf~~ 189 (887)
|-||..+...+.. ..-+.+.|+.++.+++.+++..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRG 361 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHH
Confidence 6555543321111 1235899999999999999743
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.2e-05 Score=58.73 Aligned_cols=39 Identities=33% Similarity=0.514 Sum_probs=20.0
Q ss_pred cccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccc
Q 045202 581 NLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIP 619 (887)
Q Consensus 581 ~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp 619 (887)
+|++|++++|+++++|..++.+++|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555555555555555555555555443
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00035 Score=79.31 Aligned_cols=184 Identities=15% Similarity=0.184 Sum_probs=106.6
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc---ce-EEEc-cccHHHH------
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS---AG-SYFA-NNVREAE------ 83 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f---~~-~~~~-~~~~~~s------ 83 (887)
|...++++|.+..++.+..++..+. -...+.++|..|+||||+|+.+.+.+...= +. .|-. .+++...
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 3456799999999999999987542 235678899999999999999988653210 00 0000 0000000
Q ss_pred -------hcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEE
Q 045202 84 -------ETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRI 154 (887)
Q Consensus 84 -------~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrI 154 (887)
...++.++. ++.+.+. .....+++-++|+|+++.. +..+.|...+........+
T Consensus 92 ~~~i~g~~~~gid~ir-~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGASHRGIEDIR-QINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeeccccCCHHHHH-HHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 001111111 1111100 0011245667899999754 3455666665544456677
Q ss_pred EEEeCC-hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 155 IITTRD-RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 155 iiTTR~-~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
|++|.+ ..+.... .....++++.++.++..+.+.+.+-+.+. .-..+.++.++++++|.+--
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~ 218 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRD 218 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 766643 3333221 23468999999999988887776522211 12345678889999997643
No 134
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.91 E-value=0.00018 Score=86.69 Aligned_cols=193 Identities=11% Similarity=0.068 Sum_probs=108.8
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.+.-..... . ...+.-.-.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~-~--------~pCg~C~sC~~ 80 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPT-S--------TPCGECDSCVA 80 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCC-C--------CCCcccHHHHH
Confidence 3455789999998999999988543 235688999999999999999988653110000 0 00000000111
Q ss_pred HHHHHhcCCCC---CCCcccchHH---HHH-----hhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh
Q 045202 95 LLSTLLNDGNV---KSFPNIGLNF---QSK-----RLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR 161 (887)
Q Consensus 95 il~~l~~~~~~---~~~~~~~~~~---~~~-----~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~ 161 (887)
+...-....+. .......++. +++ -..+++-++|||+++.. ...+.|+..+......+.+|++|.+.
T Consensus 81 ~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 10000000000 0000001111 111 12345557889999854 44677777666555677777666543
Q ss_pred -hhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 162 -QLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 162 -~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
.+.... ...+.|++..++.++..+.+.+.+-.... .-..+....+++.++|.+..+
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 344332 23578999999999988888765522221 112345678889999987444
No 135
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00034 Score=79.98 Aligned_cols=183 Identities=14% Similarity=0.111 Sum_probs=111.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc-ccc-------------------e-E
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR-HSA-------------------G-S 73 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~f~-------------------~-~ 73 (887)
|...+++||-+.-.+.+...+..+. -..+..++|..|+||||+|+.+.+.+-. ... . .
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 4456789999988899999887543 2356789999999999999998886521 110 0 1
Q ss_pred EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCC
Q 045202 74 YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASG 151 (887)
Q Consensus 74 ~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~g 151 (887)
..+ ..+...++.++...+ ..... .-..+++-++|+|+++.. +..+.|...+....+.
T Consensus 89 ~el----daas~~gId~IReli-e~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEM----DAASNRGIDDIRELI-EQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEe----ccccccCHHHHHHHH-HHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 111 001111222222111 11100 001245668899999754 4466776666555567
Q ss_pred cEEEEEeCChhh-hhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 152 SRIIITTRDRQL-LTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 152 srIiiTTR~~~v-~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
+++|++|.+..- ... ......+++.+++.++..+.+.+.+-..+.. --.+.+..+++.++|.+--+..
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 888877776422 111 1224689999999999888877655322221 1246778899999998855443
No 136
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.88 E-value=0.00015 Score=80.73 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=100.9
Q ss_pred CCCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAE 83 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s 83 (887)
.....++.|.+..+++|.+.+.. +-...+-+.++|++|+|||++|+++.+.....|-. +.. +
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~---i~~----s 213 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR---VVG----S 213 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE---Eeh----H
Confidence 33446789999999998887642 11235679999999999999999999976655422 110 0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH------------H----HHHHHhcCCCC
Q 045202 84 ETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP------------R----QIEFLVGRLDL 147 (887)
Q Consensus 84 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~------------~----~~~~l~~~~~~ 147 (887)
++.... .++ ........+.......+.+|++|+++.. . .+..+...++.
T Consensus 214 ------~l~~k~----~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 214 ------EFVQKY----LGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ------HHHHHh----cch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 111100 000 0000011122223456789999998642 0 12233333322
Q ss_pred C--CCCcEEEEEeCChhhhhh-----cCCCceEecCCCChHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHhhCCChH
Q 045202 148 F--ASGSRIIITTRDRQLLTN-----CGVDEKYQMKELVHADALKLFSRHAFGGD-HPYESHTELTCKTIKYARGVPL 217 (887)
Q Consensus 148 ~--~~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPL 217 (887)
. ..+..||.||........ -..+..++++..+.++..++|..+.-+.. .+..++. ++++.+.|..-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~sg 352 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKISA 352 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCCH
Confidence 1 245678888875544322 13467899999999999998887663322 1223333 44555666543
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00028 Score=83.17 Aligned_cols=196 Identities=12% Similarity=0.085 Sum_probs=112.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||-+.-++.|..++..+. -...+.++|..|+||||+|+.+.+.+.......- ....+..+..+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~c~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRPCGTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCccCHHHHH
Confidence 3456799999999999988887543 2356789999999999999999886532110000 000111112222
Q ss_pred HHHHHhcC-----CCCCCCcccchHHHHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-
Q 045202 95 LLSTLLND-----GNVKSFPNIGLNFQSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR- 161 (887)
Q Consensus 95 il~~l~~~-----~~~~~~~~~~~~~~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~- 161 (887)
+....... .......+. .+.+.+. ..+++-+||+|+++.. +..+.|...+......+.+|++|.+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 21110000 000000000 1111111 1245668999999754 45667766665445567777666543
Q ss_pred hhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 162 QLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 162 ~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
.+.... .....++++.++.++..+.+.+.+-..... --.+.+..+++.++|.+..+...
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 333322 234678899999999888887776332211 12456788999999988665443
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.87 E-value=9.9e-05 Score=89.46 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc------ceEEEccccHHHHh--c--C
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS------AGSYFANNVREAEE--T--G 86 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~--~--~ 86 (887)
..+.++||+.+++++...|..... .-+.++|.+|+|||++|+.+..++...- ...+|..+...... . .
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~--~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g 257 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKK--NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRG 257 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccc
Confidence 346799999999999998875432 2356899999999999999999864321 23444432211110 0 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh-CCceEEEEEecCCCH-----------HHHHHHhcCCCCCCCCc-E
Q 045202 87 RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL-TRKKVLIVFYDVNHP-----------RQIEFLVGRLDLFASGS-R 153 (887)
Q Consensus 87 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~~-----------~~~~~l~~~~~~~~~gs-r 153 (887)
...+-. ..+.+.+ ..++.+|++|+++.. +.-+.+...+ ..|. +
T Consensus 258 ~~e~~l---------------------~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~ 313 (731)
T TIGR02639 258 DFEERL---------------------KAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLR 313 (731)
T ss_pred hHHHHH---------------------HHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeE
Confidence 111111 1112222 245789999998632 1222333332 2333 4
Q ss_pred EEEEeCChhhhhh-------cCCCceEecCCCChHHHHHHHHHhh
Q 045202 154 IIITTRDRQLLTN-------CGVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 154 IiiTTR~~~v~~~-------~~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
+|-+|..++.... ...-+.++++.++.++..+++....
T Consensus 314 ~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 314 CIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4544443222111 0123579999999999999998644
No 139
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00037 Score=81.81 Aligned_cols=191 Identities=11% Similarity=0.099 Sum_probs=107.6
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh---cCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE---TGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~---~~~~~~l 91 (887)
|...+++||-+..++.|..++..+. -.+...++|+.|+||||+|+.+...+-..-....+-....|.+. ..++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 4456789999999999999987542 23567899999999999999998764221000000000000000 00000
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEe-CChhh
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITT-RDRQL 163 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~~v 163 (887)
.+ ........+ .++.+.+. ..+++-++|+|+++.. ..+..|...+........+|++| +...+
T Consensus 91 ------ei--daasn~~vd-~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 91 ------EM--DAASNNGVD-EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred ------EE--eccccCCHH-HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 00 000000000 01112221 1355668899999754 45777777665555566655555 44444
Q ss_pred hhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 164 LTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 164 ~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
... ....+.+++.+++.++..+.+...+-..+. .-..+.+..+++.++|.+--+
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 433 223468999999999988888765522221 112345778889999876433
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00043 Score=80.92 Aligned_cols=197 Identities=12% Similarity=0.075 Sum_probs=108.3
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc--ccceEEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR--HSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...+++||-+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+.+-. ..+...|.... ....+.-...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~---~~~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV---TEPCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc---CCCCccCHHH
Confidence 3456789999988888999887432 2356889999999999999999886532 11111122100 0011111111
Q ss_pred HHHHHHHhc-----CCCCCCCcccchHHHHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeC-
Q 045202 93 QQLLSTLLN-----DGNVKSFPNIGLNFQSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTR- 159 (887)
Q Consensus 93 ~~il~~l~~-----~~~~~~~~~~~~~~~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR- 159 (887)
+.+...-.. ........++ +..+.+. ..+++-++|+|+++.. ...+.|...+......+.+|++|.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 111100000 0000000011 1111111 1234457899999765 346677766655555666665554
Q ss_pred Chhhhhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 160 DRQLLTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 160 ~~~v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
...+... ......+++..++.++....+.+.+-.... .-..+.+..+++.++|..--
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRD 224 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHH
Confidence 3444333 234578999999999988777765532221 11245677888999996543
No 141
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.0005 Score=77.78 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=86.0
Q ss_pred cccccccHH--HHHHhHhcC----CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 21 LVGVELPMK--EIESLLRSG----STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 21 ~vGr~~~~~--~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
++|-..++. .+.++.... ......+.|||..|+|||+||+++.+.+..+...+.++. ...+...
T Consensus 114 v~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~ 183 (445)
T PRK12422 114 LVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEH 183 (445)
T ss_pred eeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHH
Confidence 457666543 333433211 112356889999999999999999998765544455662 1233334
Q ss_pred HHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHH----HHHHhcCCCC-CCCCcEEEEEeCC-hhh-----
Q 045202 95 LLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQ----IEFLVGRLDL-FASGSRIIITTRD-RQL----- 163 (887)
Q Consensus 95 il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~----~~~l~~~~~~-~~~gsrIiiTTR~-~~v----- 163 (887)
+...+... .....++..+. .-++++||++.... .+.+...+.. ...|..||+||.. +.-
T Consensus 184 ~~~~l~~~---------~~~~f~~~~~~-~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 184 LVSAIRSG---------EMQRFRQFYRN-VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred HHHHHhcc---------hHHHHHHHccc-CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhH
Confidence 44443221 12334444433 34788899864311 1122211110 1235678888754 221
Q ss_pred ---hhhcCCCceEecCCCChHHHHHHHHHhhc
Q 045202 164 ---LTNCGVDEKYQMKELVHADALKLFSRHAF 192 (887)
Q Consensus 164 ---~~~~~~~~~~~v~~L~~~~a~~Lf~~~af 192 (887)
...+.....+++++++.++..+++.+++-
T Consensus 254 ~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 254 ERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 12223346889999999999999988773
No 142
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00042 Score=72.76 Aligned_cols=172 Identities=17% Similarity=0.201 Sum_probs=106.8
Q ss_pred CCCCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 16 SETNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
....++=|.++.+++|.+...-. =+..+-|.+||++|.|||-||++|+++....|-.++=-
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS-------- 219 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS-------- 219 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH--------
Confidence 34456778999999998876532 13456789999999999999999999876655322111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh----CCceEEEEEecCCCH--------------HH--HHHHhcC
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL----TRKKVLIVFYDVNHP--------------RQ--IEFLVGR 144 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l----~~kk~LiVlDdv~~~--------------~~--~~~l~~~ 144 (887)
++.++.+ .++.+.+++.. ...+..|++|.+|.. .| +-.|...
T Consensus 220 -----ElVqKYi-------------GEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q 281 (406)
T COG1222 220 -----ELVQKYI-------------GEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ 281 (406)
T ss_pred -----HHHHHHh-------------ccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh
Confidence 2222221 12233333322 346789999998632 11 2334444
Q ss_pred CCCCC--CCcEEEEEeCChhhhh-----hcCCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCCh
Q 045202 145 LDLFA--SGSRIIITTRDRQLLT-----NCGVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 145 ~~~~~--~gsrIiiTTR~~~v~~-----~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 216 (887)
++-|. ..-+||.+|--.+++. .-.-++.++++.-+.+.-.++|.-|+-+..- +.-+++.+ ++.+.|..
T Consensus 282 lDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~l----a~~~~g~s 357 (406)
T COG1222 282 LDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELL----ARLTEGFS 357 (406)
T ss_pred ccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHH----HHhcCCCc
Confidence 55443 3468888777555543 2245789999977777778999988865442 33455544 44555554
Q ss_pred H
Q 045202 217 L 217 (887)
Q Consensus 217 L 217 (887)
=
T Consensus 358 G 358 (406)
T COG1222 358 G 358 (406)
T ss_pred h
Confidence 3
No 143
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00047 Score=78.84 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=108.8
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc---c--ceEEEccccHHHHhcCCHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH---S--AGSYFANNVREAEETGRLG 89 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---f--~~~~~~~~~~~~s~~~~~~ 89 (887)
|....+++|-+.-++.+..++..+. -.....++|+.|+||||+|+.+...+... . ++.. ..++...... +..
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g-~~~ 88 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKG-SFP 88 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcC-CCC
Confidence 4455789999999999999997543 23567789999999999999998865311 0 0000 0000000000 000
Q ss_pred HHHHHHHHHHhcCCCCCCCcccchHHHHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-h
Q 045202 90 DLRQQLLSTLLNDGNVKSFPNIGLNFQSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRD-R 161 (887)
Q Consensus 90 ~l~~~il~~l~~~~~~~~~~~~~~~~~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~ 161 (887)
++. .+.... .... ...+.+.+. ..+++-++|+|+++.. ...+.+...+....+...+|++|.+ .
T Consensus 89 d~~-----eidaas--~~gv-d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 89 DLI-----EIDAAS--NRGI-DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred cEE-----EEeCcc--CCCH-HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 000 000000 0000 001122221 1356679999999754 4466666666554556666665543 3
Q ss_pred hhhhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 162 QLLTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 162 ~v~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
.+... ......+++.+++.++..+.+...+-.... .--.+.+..+++.++|.+-.+..+.
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 123458999999999988888776532221 1223566778889999776554333
No 144
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=3.1e-05 Score=83.95 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=60.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCc--c----cchHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFP--N----IGLNF 115 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~--~----~~~~~ 115 (887)
..++|+|.+|+||||||+.+++.+... |+..+|+..+++ ....+.+++++++..+.......... . ...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 468999999999999999999977554 999999955422 12578899999865543332222111 1 11111
Q ss_pred HHH-hhCCceEEEEEecCCCH
Q 045202 116 QSK-RLTRKKVLIVFYDVNHP 135 (887)
Q Consensus 116 ~~~-~l~~kk~LiVlDdv~~~ 135 (887)
.+. +-.+++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 112 23689999999999654
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00049 Score=80.95 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=111.1
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEccccHHHHhcCCHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~~~~l~~ 93 (887)
|....+++|.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.+-.. .+... ....+.-+..+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~--------~~~Cg~C~~C~ 82 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT--------PEPCGKCELCR 82 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC--------CCCCcccHHHH
Confidence 3455789999999999999988543 23567899999999999999998865322 11000 00111112222
Q ss_pred HHHHHHhcCCC-CCCCcccchHHHHHh---h-----CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh
Q 045202 94 QLLSTLLNDGN-VKSFPNIGLNFQSKR---L-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQ 162 (887)
Q Consensus 94 ~il~~l~~~~~-~~~~~~~~~~~~~~~---l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 162 (887)
.+.......-. .......+.+.+++. . .+++-++|+|+++.. +.++.|...+........+|++|.+.+
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 22111100000 000001112222211 1 245568899999854 457777766654445566666655433
Q ss_pred -hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 163 -LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 163 -v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
+.... .....+++..++.++..+.+.+.+-..... --.+.+..++++++|.+..+..+
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 33222 234678888999998888777665322111 12356788899999988655433
No 146
>CHL00176 ftsH cell division protein; Validated
Probab=97.78 E-value=0.00031 Score=82.62 Aligned_cols=175 Identities=15% Similarity=0.144 Sum_probs=100.4
Q ss_pred CCCCcccccccHHHHHHhHhc---C-------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC
Q 045202 17 ETNDLVGVELPMKEIESLLRS---G-------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG 86 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~ 86 (887)
..++++|.+...+++.+.+.. . ..-.+-|.++|++|+|||++|+++..+....|- .+. .+
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i---~is----~s--- 250 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF---SIS----GS--- 250 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee---ecc----HH---
Confidence 346789998888777665432 1 112356899999999999999999887543321 110 00
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCCCCC--
Q 045202 87 RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRLDLF-- 148 (887)
Q Consensus 87 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~~~~-- 148 (887)
++..... +. ........+.+.....+.+|++||++.. ..+..+....+.+
T Consensus 251 ---~f~~~~~----g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 ---EFVEMFV----GV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred ---HHHHHhh----hh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 1110000 00 0011122334444567899999999643 1133444333322
Q ss_pred CCCcEEEEEeCChhhhhh-----cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 149 ASGSRIIITTRDRQLLTN-----CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 149 ~~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
..+-.||.||........ -.-+..+.++..+.++-.+++..++-... .........+++.+.|..
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSPDVSLELIARRTPGFS 388 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCCC
Confidence 345567777766544321 12357889999999999999988874321 111234456777777743
No 147
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00067 Score=78.17 Aligned_cols=156 Identities=11% Similarity=0.128 Sum_probs=90.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhccc--ceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHS--AGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL 120 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 120 (887)
..+.|||..|+|||.|++++.+.+...+ ..+.++. ..++..++...+... ....+++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHHh
Confidence 4589999999999999999999876543 2335552 233444444333221 122344444
Q ss_pred CCceEEEEEecCCCH---HHHH-HHhcCCCC-CCCCcEEEEEeCCh---------hhhhhcCCCceEecCCCChHHHHHH
Q 045202 121 TRKKVLIVFYDVNHP---RQIE-FLVGRLDL-FASGSRIIITTRDR---------QLLTNCGVDEKYQMKELVHADALKL 186 (887)
Q Consensus 121 ~~kk~LiVlDdv~~~---~~~~-~l~~~~~~-~~~gsrIiiTTR~~---------~v~~~~~~~~~~~v~~L~~~~a~~L 186 (887)
+.- =+|||||++.. +.|+ .+...+.. ...|..|||||+.. .+...+...-+++++..+.+.-.++
T Consensus 376 ~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aI 454 (617)
T PRK14086 376 REM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAI 454 (617)
T ss_pred hcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHH
Confidence 432 47888999643 2221 12111111 13456688888752 2222334456899999999999999
Q ss_pred HHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 187 FSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 187 f~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
+.+++-...-. --.++.+-|++.+.+..-.|.
T Consensus 455 L~kka~~r~l~--l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 455 LRKKAVQEQLN--APPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHH
Confidence 99887433221 124556666666665544433
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.76 E-value=0.00023 Score=87.26 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
..+.+|||+.++.++...|.....+ -+.++|.+|+||||+|+.+..++..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~--n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKN--NPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcC--ceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4467999999999999988754332 3568999999999999999998744
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.1e-05 Score=56.51 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=33.8
Q ss_pred CCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCC
Q 045202 603 SSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPK 644 (887)
Q Consensus 603 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 644 (887)
++|++|++++|+|+.+|..+++|++|+.|++++|+ +.+++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 57999999999999999889999999999999995 444443
No 150
>CHL00181 cbbX CbbX; Provisional
Probab=97.74 E-value=0.0011 Score=70.55 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=85.8
Q ss_pred CcccccccHHHHHHhHh---c-------C--C-CCeeEEEEEcCCCcchHHHHHHHHHHHhcc-c-ceEEEccccHHHHh
Q 045202 20 DLVGVELPMKEIESLLR---S-------G--S-TNVCTLGIWGIGGIGKTTIAGAIFNKISRH-S-AGSYFANNVREAEE 84 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~---~-------~--~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~s~ 84 (887)
+++|.+..+++|.++.. . + . ..-..+.++|.+|+||||+|+++++..... + ....|+. ++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~- 98 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT- 98 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec-
Confidence 68998888887665432 1 1 1 112347889999999999999998864321 1 1111331 11
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-----------HHHHHHhcCCCCCCCCcE
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-----------RQIEFLVGRLDLFASGSR 153 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-----------~~~~~l~~~~~~~~~gsr 153 (887)
..++.. ...+.. .......+++. ..-+|++|+++.. +..+.|.........+.+
T Consensus 99 ---~~~l~~----~~~g~~-----~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~ 163 (287)
T CHL00181 99 ---RDDLVG----QYIGHT-----APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLV 163 (287)
T ss_pred ---HHHHHH----HHhccc-----hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEE
Confidence 112221 111110 00001122221 2248899999642 334455554444445567
Q ss_pred EEEEeCChhhhhh--------cCCCceEecCCCChHHHHHHHHHhhcC
Q 045202 154 IIITTRDRQLLTN--------CGVDEKYQMKELVHADALKLFSRHAFG 193 (887)
Q Consensus 154 IiiTTR~~~v~~~--------~~~~~~~~v~~L~~~~a~~Lf~~~af~ 193 (887)
||.++....+... -..+..+.++.++.+|..+++.+.+-+
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 7777764433211 123568999999999999998887743
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00091 Score=77.75 Aligned_cols=189 Identities=11% Similarity=0.079 Sum_probs=111.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--cc--eEEEccccHHHHhc--CCH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--SA--GSYFANNVREAEET--GRL 88 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--f~--~~~~~~~~~~~s~~--~~~ 88 (887)
|...+++||-+.-+++|..++..+. -.+.+.++|..|+||||+|+++.+.+-.. .. .+--....+..... .++
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 4456799999999999999998543 23568899999999999999998865321 10 00000000000000 000
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchHHHHHh--------hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEe
Q 045202 89 GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR--------LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITT 158 (887)
Q Consensus 89 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~--------l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT 158 (887)
.. +.+ ......+.+++. ..+++-++|+|+++.. ..++.|...+........+|++|
T Consensus 91 ~~--------idg------as~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 91 IE--------IDG------ASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred EE--------ecC------cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEec
Confidence 00 000 000111112111 2345668899999754 44777777776555677777666
Q ss_pred CC-hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 159 RD-RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 159 R~-~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
.+ ..+.... .....++.+.++.++..+.+.+.+.....+ --.+.+..+++.++|.+-.+.
T Consensus 157 te~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 157 TEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred CChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 54 3333322 234578999999999888887766433322 224567778899999875443
No 152
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.73 E-value=0.00023 Score=73.05 Aligned_cols=189 Identities=14% Similarity=0.133 Sum_probs=117.3
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh--cccceEEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS--RHSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...++++|-+..+.-|.+.+.. ........+|++|.|||+-|++...++- +.|.+++-=. ++|...|..-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l---naSderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL---NASDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh---cccccccccchh
Confidence 55567899999999999988875 4567788999999999999999887653 3455443321 223333332111
Q ss_pred HHH--HHHHhcCCCCCCCcccchHHHHHhhCCce-EEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhhh-h
Q 045202 93 QQL--LSTLLNDGNVKSFPNIGLNFQSKRLTRKK-VLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQLLT-N 166 (887)
Q Consensus 93 ~~i--l~~l~~~~~~~~~~~~~~~~~~~~l~~kk-~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~-~ 166 (887)
+++ ++++....... ... ..++ -.||||+++.. +.|..+......+...+|.|+.+-...... .
T Consensus 107 ~Kik~fakl~~~~~~~----------~~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLKRS----------DGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhcCHHHHhhccccc----------cCC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 111 11111110000 000 0122 47899999865 559999888887778888776555433322 1
Q ss_pred c-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh-HHHHH
Q 045202 167 C-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP-LALKV 221 (887)
Q Consensus 167 ~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~ 221 (887)
. ....-|..+.|.+++..+-+..-|-+.+.+ -..+..+.|+++++|-- -|+.+
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 1 223578999999999988888877444332 23456788899998853 34433
No 153
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.73 E-value=1e-06 Score=93.21 Aligned_cols=248 Identities=16% Similarity=0.158 Sum_probs=125.2
Q ss_pred ccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCC-Ccc--CCCCccEEEeecCCCCCCCccc--cc--CC
Q 045202 390 LKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLP-ARI--HLGLLKELNLSGCSKLKRLPEI--SS--GN 462 (887)
Q Consensus 390 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~~--~l~~L~~L~L~~~~~l~~lp~~--~~--~~ 462 (887)
..|+.|.+.++......+-..+..+++++++|++.+|..++... ..+ .++.|++|+|..|..++...-. .. ++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 45677777777765555556677889999999999998554321 111 3889999999998766643221 11 55
Q ss_pred ccEEEccCCC-CCC--CCcchhcCCCCcEEecccCCCCcc--CCcccCCCCCCcEEEeeCCCCCCCCc--hhhcCCCCCc
Q 045202 463 IETMRLDGTA-PEE--LPSSIECLSKLLHLDLVDCKTLKS--LPSGLGKLKSLGILSIDGCSNLQRLP--EELGNLQALD 535 (887)
Q Consensus 463 L~~L~L~~~~-i~~--lp~~i~~l~~L~~L~L~~~~~~~~--lp~~l~~L~~L~~L~L~~~~~~~~~p--~~l~~l~~L~ 535 (887)
|++|+++.+. |.. +..-..++..|+.+.+++|.-.+. +-..-+...-+..+++..|..+.... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 5555555432 221 112233344444554444432210 00001122334444444443322111 1112345566
Q ss_pred eeeccCccC-ccCC-cc-ccCCCCCCEEEccc-cCCCcccccccccCCCcccEEecccCCCCC---ccccccCCCCCcEE
Q 045202 536 SLHAVGTAI-TEVP-PS-IVRLKRVRGIYLGR-NRGLSLPITFSVDGLQNLLDLSLNDCCIME---LPESLGLLSSVREL 608 (887)
Q Consensus 536 ~L~L~~n~i-~~lp-~~-l~~l~~L~~L~L~~-n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---lp~~~~~l~~L~~L 608 (887)
.|+.+++.- +..+ .. ..+..+|+.|.+.. .++....+...-.+.+.|+.+++..|.+.. +-..-.+++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 666655432 2111 11 23556677777633 333322222223355667777776665442 32333456677777
Q ss_pred EcCCCCCc------ccchhhhcCCCccEeeccccc
Q 045202 609 HLNGNNFE------RIPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 609 ~L~~n~l~------~lp~~l~~l~~L~~L~L~~c~ 637 (887)
.|+++... .+...-..+..|..|.|++|+
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p 412 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP 412 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence 77765322 112233445667777777765
No 154
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.1e-05 Score=95.44 Aligned_cols=127 Identities=22% Similarity=0.193 Sum_probs=59.7
Q ss_pred CCCCcEEEeeCCCCC-CCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEE
Q 045202 507 LKSLGILSIDGCSNL-QRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDL 585 (887)
Q Consensus 507 L~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 585 (887)
||+|+.|.+++-... ..+-....++++|..||+++++++.+ ..+++|++|+.|.+.+-.+.+...-..+-++++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 455555555542221 11223334455555555555555544 4455555555555544333322222223455556666
Q ss_pred ecccCCCCCcc-------ccccCCCCCcEEEcCCCCCc--ccchhhhcCCCccEeecc
Q 045202 586 SLNDCCIMELP-------ESLGLLSSVRELHLNGNNFE--RIPESIIQLSNLKSLFIR 634 (887)
Q Consensus 586 ~Ls~n~l~~lp-------~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~ 634 (887)
|+|.......+ +.-..+|.|+.||.|++.+. .+-.-+..-++|+.+.+-
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 66554433211 12234667777777776665 222233334455444433
No 155
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=2.2e-06 Score=76.90 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=58.4
Q ss_pred cCCCCCceeeccCccCccCCccccC-CCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcE
Q 045202 529 GNLQALDSLHAVGTAITEVPPSIVR-LKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRE 607 (887)
Q Consensus 529 ~~l~~L~~L~L~~n~i~~lp~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~ 607 (887)
.....|+..+|++|.+..+|+.+.. .+.++.|++++|.+. .+|..+..++.|+.|+++.|.+...|..+..+.+|-.
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHH
Confidence 3344455556666666666655433 335566666666555 3344466667777777777777777776666777888
Q ss_pred EEcCCCCCcccchhh
Q 045202 608 LHLNGNNFERIPESI 622 (887)
Q Consensus 608 L~L~~n~l~~lp~~l 622 (887)
|+..+|.+..+|..+
T Consensus 128 Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 128 LDSPENARAEIDVDL 142 (177)
T ss_pred hcCCCCccccCcHHH
Confidence 888888777777654
No 156
>PRK08116 hypothetical protein; Validated
Probab=97.69 E-value=0.0002 Score=75.59 Aligned_cols=101 Identities=26% Similarity=0.352 Sum_probs=58.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
..+.+||..|+|||.||.++++.+..+...++++. ..++...+........ ......+.+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~------~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG------KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc------cccHHHHHHHhcC
Confidence 46899999999999999999998876644556662 2334444443322211 1112234444554
Q ss_pred ceEEEEEecCCC--HHHH--HHHhcCCCC-CCCCcEEEEEeCC
Q 045202 123 KKVLIVFYDVNH--PRQI--EFLVGRLDL-FASGSRIIITTRD 160 (887)
Q Consensus 123 kk~LiVlDdv~~--~~~~--~~l~~~~~~-~~~gsrIiiTTR~ 160 (887)
-. ||||||+.. ...| +.+..-+.. ...|..+|+||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 899999942 2223 222222211 2356678888864
No 157
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.69 E-value=0.0011 Score=70.19 Aligned_cols=198 Identities=18% Similarity=0.225 Sum_probs=115.5
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCe-eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNV-CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQL 95 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~i 95 (887)
..+.+-+|+.++..+..++-..+..+ ..|.|+|-+|.|||.+.+.+++....+ .+|+. .-..+....+.++|
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n----~~ecft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLN----CVECFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeee----hHHhccHHHHHHHH
Confidence 45678899999999999988665533 456999999999999999999976333 47884 44556777888888
Q ss_pred HHHHh-cCCCCCCCc---ccchH---HHHH--hh--CCceEEEEEecCCCHHHHHH--------HhcCCCCCCCCcEEEE
Q 045202 96 LSTLL-NDGNVKSFP---NIGLN---FQSK--RL--TRKKVLIVFYDVNHPRQIEF--------LVGRLDLFASGSRIII 156 (887)
Q Consensus 96 l~~l~-~~~~~~~~~---~~~~~---~~~~--~l--~~kk~LiVlDdv~~~~~~~~--------l~~~~~~~~~gsrIii 156 (887)
+.++. .+.++.... +...+ .+.+ .. ++++++||||+++...+.+. +....+ .+.. +|+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i-~ii 153 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTI-VII 153 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCce-EEE
Confidence 88885 332222111 11111 1222 11 24699999999987655332 222222 2233 333
Q ss_pred EeCC---hhhhhhcCCCc--eEecCCCChHHHHHHHHHhhcCCCCC--CccHHHHHHHHHHhhCCChHHHHHHHH
Q 045202 157 TTRD---RQLLTNCGVDE--KYQMKELVHADALKLFSRHAFGGDHP--YESHTELTCKTIKYARGVPLALKVWHQ 224 (887)
Q Consensus 157 TTR~---~~v~~~~~~~~--~~~v~~L~~~~a~~Lf~~~af~~~~~--~~~~~~l~~~i~~~~~GlPLal~~lg~ 224 (887)
++-- +.....+|... +...+.-+.+|-.+++.+.-=++... ...|..+.-++.-.+.+-+-++..+.+
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~ 228 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLIS 228 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3332 22233344433 56678889999999886533111000 123344444444333336666655553
No 158
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.68 E-value=0.00031 Score=86.26 Aligned_cols=150 Identities=14% Similarity=0.146 Sum_probs=84.2
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-c-----ceEEEccccHHHHh-cCCHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-S-----AGSYFANNVREAEE-TGRLGDL 91 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f-----~~~~~~~~~~~~s~-~~~~~~l 91 (887)
+.++||+++++++.+.|.....+ -+.++|.+|+|||++|+.+..++... - ...+|..+...... .....+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~--n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~ 256 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN--NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEF 256 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC--CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHH
Confidence 57999999999999999754332 35699999999999999999876432 1 23455433222110 0000011
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH---------HHHHHhcCCCCCCCC-cEEEEEeCCh
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR---------QIEFLVGRLDLFASG-SRIIITTRDR 161 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~---------~~~~l~~~~~~~~~g-srIiiTTR~~ 161 (887)
.+ .....+.+.-..+++++++|+++... ....+..+ ....| -++|.+|..+
T Consensus 257 e~-----------------rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp--~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 257 EE-----------------RLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKP--ALARGELQCIGATTLD 317 (821)
T ss_pred HH-----------------HHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHH--HHhCCCcEEEEeCCHH
Confidence 11 01111222223467899999985221 11122211 11223 4555555554
Q ss_pred hhhhh-------cCCCceEecCCCChHHHHHHHHH
Q 045202 162 QLLTN-------CGVDEKYQMKELVHADALKLFSR 189 (887)
Q Consensus 162 ~v~~~-------~~~~~~~~v~~L~~~~a~~Lf~~ 189 (887)
...+. ....+.++++..+.++..+++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 11235788999999998888764
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.68 E-value=0.00035 Score=86.04 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=85.2
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc------ceEEEccccHHHH-hcCCHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS------AGSYFANNVREAE-ETGRLG 89 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s-~~~~~~ 89 (887)
..+.+|||+.++.++...|.....+ -+.++|.+|+|||++|+.+..++...+ ...+|..+....- ...-..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~--n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g 248 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKN--NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG 248 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCC--ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh
Confidence 3467999999999999988754433 355799999999999999998875432 2333432221110 000000
Q ss_pred HHHHHHHHHHhcCCCCCCCcccchHHHHHhh--CCceEEEEEecCCCHH----------HHHHHhcCCCCCCCC-cEEEE
Q 045202 90 DLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL--TRKKVLIVFYDVNHPR----------QIEFLVGRLDLFASG-SRIII 156 (887)
Q Consensus 90 ~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l--~~kk~LiVlDdv~~~~----------~~~~l~~~~~~~~~g-srIii 156 (887)
+. +.....+.+.+ .+++++|++|+++... .-+.+... ...| -++|-
T Consensus 249 ~~------------------e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~---l~~g~i~~Ig 307 (852)
T TIGR03346 249 EF------------------EERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA---LARGELHCIG 307 (852)
T ss_pred hH------------------HHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh---hhcCceEEEE
Confidence 00 11111111222 2468999999996432 12222222 2233 34554
Q ss_pred EeCChhhhhhc-------CCCceEecCCCChHHHHHHHHHh
Q 045202 157 TTRDRQLLTNC-------GVDEKYQMKELVHADALKLFSRH 190 (887)
Q Consensus 157 TTR~~~v~~~~-------~~~~~~~v~~L~~~~a~~Lf~~~ 190 (887)
+|..+...... ..-+.+.++..+.++..+++...
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 55444332111 12356889999999999988654
No 160
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.66 E-value=0.00045 Score=64.44 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=22.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
|.|+|.+|+||||+|+.+.+.+..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~ 25 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP 25 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc
Confidence 5789999999999999999987543
No 161
>PF14516 AAA_35: AAA-like domain
Probab=97.66 E-value=0.002 Score=70.34 Aligned_cols=204 Identities=7% Similarity=0.119 Sum_probs=117.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh--cCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE--TGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~--~~~~~~l~ 92 (887)
+.+.+..|.|...-+++.+.|... -..+.|.|+-.+|||+|...+.++....=-..+++ ++..... ..+...+.
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~i-d~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYI-DLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEE-EeecCCCcccCCHHHHH
Confidence 455667889985566666666532 24789999999999999999998775442233444 2323222 23455555
Q ss_pred HHHHHHHhcCCCCC-----------CCcccchHHHHHhh---CCceEEEEEecCCCHHH--------HHHHhcCCC----
Q 045202 93 QQLLSTLLNDGNVK-----------SFPNIGLNFQSKRL---TRKKVLIVFYDVNHPRQ--------IEFLVGRLD---- 146 (887)
Q Consensus 93 ~~il~~l~~~~~~~-----------~~~~~~~~~~~~~l---~~kk~LiVlDdv~~~~~--------~~~l~~~~~---- 146 (887)
+.+...+...-... .........+.+.+ ..++++|++|+|+..-. +..+.....
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 55554443322111 11222334444433 36899999999974321 121211111
Q ss_pred --CCCCCcEEEEEeCChhhhhh-----cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 147 --LFASGSRIIITTRDRQLLTN-----CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 147 --~~~~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
....-+-|++.+........ .++...+++++++.+|..+|..++-.. . -.+..+++...++|+|--+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHHHH
Confidence 01111122222222112111 134568899999999999999876522 1 1223889999999999888
Q ss_pred HHHHHHHhH
Q 045202 220 KVWHQAVFI 228 (887)
Q Consensus 220 ~~lg~~L~~ 228 (887)
..++..+.+
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 777766655
No 162
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.65 E-value=0.00062 Score=79.16 Aligned_cols=192 Identities=16% Similarity=0.148 Sum_probs=119.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|......|=|. ++...|.. ..+.|.+.|..++|-|||||+-.... ....-..+.|+.-- ....+...+.+.
T Consensus 15 P~~~~~~v~R~----rL~~~L~~-~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~y 85 (894)
T COG2909 15 PVRPDNYVVRP----RLLDRLRR-ANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLSY 85 (894)
T ss_pred CCCcccccccH----HHHHHHhc-CCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHHH
Confidence 33345555554 45555543 34679999999999999999999877 44455678899522 223455677777
Q ss_pred HHHHHhcCCCCCCC---------ccc----chHHHHHhh--CCceEEEEEecCCCH------HHHHHHhcCCCCCCCCcE
Q 045202 95 LLSTLLNDGNVKSF---------PNI----GLNFQSKRL--TRKKVLIVFYDVNHP------RQIEFLVGRLDLFASGSR 153 (887)
Q Consensus 95 il~~l~~~~~~~~~---------~~~----~~~~~~~~l--~~kk~LiVlDdv~~~------~~~~~l~~~~~~~~~gsr 153 (887)
++..+...-....+ ... ....+...+ -.++..+||||..-. ..++.+..+.| ++-.
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l~ 162 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENLT 162 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCeE
Confidence 77766532222111 111 112222222 246789999998532 22556665544 7888
Q ss_pred EEEEeCChhhhhhc--C-CCceEecC----CCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 154 IIITTRDRQLLTNC--G-VDEKYQMK----ELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 154 IiiTTR~~~v~~~~--~-~~~~~~v~----~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
.|+|||...-.... . .+...++. .++.+|+-++|....- .+ -...-++.+.++..|-+-|+..++
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l~--Ld~~~~~~L~~~teGW~~al~L~a 234 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---LP--LDAADLKALYDRTEGWAAALQLIA 234 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---CC--CChHHHHHHHhhcccHHHHHHHHH
Confidence 99999986543221 1 23445554 4899999999977651 11 123457788899999998887776
No 163
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.0014 Score=77.21 Aligned_cols=179 Identities=16% Similarity=0.139 Sum_probs=108.6
Q ss_pred CCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc-----------------------ccce
Q 045202 16 SETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR-----------------------HSAG 72 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-----------------------~f~~ 72 (887)
...+++||-+..++.|..++..+. -...+.++|..|+||||+|+.+...+-- +|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 456789999999999999987542 2356889999999999999998876531 1111
Q ss_pred EEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCC
Q 045202 73 SYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFAS 150 (887)
Q Consensus 73 ~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~ 150 (887)
. .+ +.+...++.++. +++.++... -..+++=++|+|+++.. ..++.|...+.....
T Consensus 93 ~-~l----d~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~ 150 (614)
T PRK14971 93 H-EL----DAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPS 150 (614)
T ss_pred E-Ee----cccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCC
Confidence 1 11 001111122221 111111100 01234457899999754 446677766655556
Q ss_pred CcEEEEEe-CChhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 151 GSRIIITT-RDRQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 151 gsrIiiTT-R~~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
.+.+|++| +...+.... ....+++++.++.++..+.+.+.+-..+. .--.+.+..+++.++|..--+
T Consensus 151 ~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 151 YAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 77766655 444444432 23568999999999998888776633221 112346778888999866433
No 164
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.64 E-value=0.00028 Score=84.51 Aligned_cols=152 Identities=17% Similarity=0.207 Sum_probs=84.2
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc------cceEEEccccHHHHhcCCHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH------SAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
+.++||+.++.++.+.|...... -+.++|.+|+|||++|+.++.++... .+...|..+. ..+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~--n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~~ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKN--NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------GSLL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCC--CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------HHHh
Confidence 56999999999999988864332 24679999999999999999875332 1233333211 1110
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhh-CCceEEEEEecCCCH----------HHHHHHhcCCCCCCCC-cEEEEEeCC
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRL-TRKKVLIVFYDVNHP----------RQIEFLVGRLDLFASG-SRIIITTRD 160 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~~----------~~~~~l~~~~~~~~~g-srIiiTTR~ 160 (887)
.+.. -..+.+.....+.+.+ +.++.+|++|+++.. .+...+..+.- ..| -+||-+|..
T Consensus 255 -------aG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~ 324 (758)
T PRK11034 255 -------AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTY 324 (758)
T ss_pred -------cccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCCh
Confidence 0000 0001111111222222 345679999999632 12222222211 233 345545544
Q ss_pred hhhhhhc-------CCCceEecCCCChHHHHHHHHHhh
Q 045202 161 RQLLTNC-------GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 161 ~~v~~~~-------~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
++..+.. +.-+.++|+.++.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3321111 123579999999999999987643
No 165
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.002 Score=69.98 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=63.2
Q ss_pred CceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-hhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCC
Q 045202 122 RKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQL-LTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHP 197 (887)
Q Consensus 122 ~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v-~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~ 197 (887)
+.|+. |+|+++.. .....+...+.....++.+|+||.+.+. .... ...+.+.+.+++.+++.+.+.... . .
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~-- 180 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-E-- 180 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-c--
Confidence 34555 67999754 4466666666555567888888877543 3332 235689999999999998887653 1 1
Q ss_pred CccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 198 YESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 198 ~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
...+.+..++..++|.|+....+.
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHHH
Confidence 112345677889999997655443
No 166
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0013 Score=76.76 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=109.1
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...+++||.+.-++.+..++..+. -.+.+.++|..|+||||+|+.+...+-..-. .. ..+.+.-+..+.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~----~~-----~~pC~~C~~C~~ 81 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP----PD-----GEPCNECEICKA 81 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCC----CC-----CCCCCccHHHHH
Confidence 4556899999999999999988543 2356778999999999999999875421100 00 000000111111
Q ss_pred HHHHHhcCCC-CCCCcccchHH---HHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-h
Q 045202 95 LLSTLLNDGN-VKSFPNIGLNF---QSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR-Q 162 (887)
Q Consensus 95 il~~l~~~~~-~~~~~~~~~~~---~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~ 162 (887)
+.......-. .......+.+. +.+. ..+++-++|+|+++.. ..+..|...+........+|++|... .
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 1110000000 00000111222 2222 2345668899999854 45777776665444555666555433 3
Q ss_pred hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 163 LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 163 v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
+.... .....++...++.++..+.+...+-..+... -.+....+++.++|.+..+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 33222 2346788999999998888877663322211 24567788889998775443
No 167
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.62 E-value=2.9e-05 Score=83.12 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=113.1
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL 120 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 120 (887)
..|-+.++|.|||||||+|-.+.. +...|....|+.+.+.++++.- +--.+...+.-.. ..-+.....+..+.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~---v~~~~ag~~gl~~---~~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPAL---VFPTLAGALGLHV---QPGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhH---hHHHHHhhccccc---ccchHHHHHHHHHH
Confidence 567899999999999999999988 8888887777766555544321 1111222222111 11122345667788
Q ss_pred CCceEEEEEecCCCHHH-HHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecCCCChH-HHHHHHHHhhcCCCC--
Q 045202 121 TRKKVLIVFYDVNHPRQ-IEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMKELVHA-DALKLFSRHAFGGDH-- 196 (887)
Q Consensus 121 ~~kk~LiVlDdv~~~~~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~~L~~~-~a~~Lf~~~af~~~~-- 196 (887)
.+++.++|+||..+... -..+...+....+.-+|+.|+|+... +..+..+.++.|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999999865432 22222223334455578888887543 335678888888877 689998877632221
Q ss_pred -CCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 197 -PYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 197 -~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
-...-.....+|.+...|.|+++...+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaa 190 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAA 190 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHH
Confidence 123334567889999999999999877
No 168
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.62 E-value=2.3e-05 Score=78.45 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=111.3
Q ss_pred chhcCCCCcEEecccCCCCccCCcc----cCCCCCCcEEEeeCCCCCCCCc-------------hhhcCCCCCceeeccC
Q 045202 479 SIECLSKLLHLDLVDCKTLKSLPSG----LGKLKSLGILSIDGCSNLQRLP-------------EELGNLQALDSLHAVG 541 (887)
Q Consensus 479 ~i~~l~~L~~L~L~~~~~~~~lp~~----l~~L~~L~~L~L~~~~~~~~~p-------------~~l~~l~~L~~L~L~~ 541 (887)
.+-+|++|+..+||+|.+....|.. +++-+.|.+|.+++|.+-..-. ....+-+.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3557899999999999877776654 5567789999999886432111 1233557799999999
Q ss_pred ccCccCCcc-----ccCCCCCCEEEccccCCCcccc----cccccCCCcccEEecccCCCCC-----ccccccCCCCCcE
Q 045202 542 TAITEVPPS-----IVRLKRVRGIYLGRNRGLSLPI----TFSVDGLQNLLDLSLNDCCIME-----LPESLGLLSSVRE 607 (887)
Q Consensus 542 n~i~~lp~~-----l~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~ 607 (887)
|++...|.. +..-.+|+.+.+..|.+..-.+ -..+..+.+|+.|||.+|.++. +...+...+.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 988866542 3333689999998887653211 1123467899999999998874 4445666778999
Q ss_pred EEcCCCCCccc-c----hhh--hcCCCccEeeccccccc
Q 045202 608 LHLNGNNFERI-P----ESI--IQLSNLKSLFIRYCERL 639 (887)
Q Consensus 608 L~L~~n~l~~l-p----~~l--~~l~~L~~L~L~~c~~l 639 (887)
|.+..|-++.- . ..+ ...|+|+.|-..+|..-
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 99999977621 1 122 23688888888888643
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.60 E-value=0.00089 Score=77.65 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=95.0
Q ss_pred CCCCcccccccHHHHHHhHh---c-------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC
Q 045202 17 ETNDLVGVELPMKEIESLLR---S-------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG 86 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~ 86 (887)
..++++|.+...+++.+++. . +....+-+.++|++|+|||++|+++.......|-. + +
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~---i------~--- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS---I------S--- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee---c------c---
Confidence 34678899887777665543 1 11223458899999999999999998875433311 1 0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----------------HHHHHhcCCCCC--
Q 045202 87 RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----------------QIEFLVGRLDLF-- 148 (887)
Q Consensus 87 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----------------~~~~l~~~~~~~-- 148 (887)
..++.... .+. ........+.......+.+|++||++... .+..+...++..
T Consensus 121 -~~~~~~~~----~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 121 -GSDFVEMF----VGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred -HHHHHHHH----hcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 00111100 000 00011122223334567899999995421 122233223222
Q ss_pred CCCcEEEEEeCChhhhh-----hcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 149 ASGSRIIITTRDRQLLT-----NCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 149 ~~gsrIiiTTR~~~v~~-----~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
..+-.||.||....... ....+..++++..+.++-.++|..++-+.... . ......+++.+.|..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-P--DVDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-c--chhHHHHHHhCCCCC
Confidence 23445666665543221 11346789999999999999998876332221 1 112346777777744
No 170
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.60 E-value=0.00058 Score=76.28 Aligned_cols=119 Identities=19% Similarity=0.186 Sum_probs=78.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRK 123 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~k 123 (887)
++.|.|+-++||||+++.+....... .+++...........+.+..+... ..... +
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~--------------------~~~~~-~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYI--------------------ELKER-E 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHH--------------------Hhhcc-C
Confidence 89999999999999997766654444 344422111111112212221111 11111 8
Q ss_pred eEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhh------cCCCceEecCCCChHHHHHHH
Q 045202 124 KVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTN------CGVDEKYQMKELVHADALKLF 187 (887)
Q Consensus 124 k~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~------~~~~~~~~v~~L~~~~a~~Lf 187 (887)
+..|+||.|.....|+.....+.+.++. +|++|+-+..+... .|....+++-+|+..|-..+-
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8999999999999999888777666666 89998887666432 244678999999999987753
No 171
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0012 Score=77.54 Aligned_cols=182 Identities=12% Similarity=0.148 Sum_probs=103.8
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc-cc-ce-EEEc-cccHHH--------
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR-HS-AG-SYFA-NNVREA-------- 82 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~f-~~-~~~~-~~~~~~-------- 82 (887)
|...+++||.+.-++.|..++..+. -...+.++|..|+||||+|+.+.+.+-. +. .. .|-. ..++..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 4456799999988889999887542 2356789999999999999999886431 11 00 0000 000000
Q ss_pred -----HhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEE
Q 045202 83 -----EETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRII 155 (887)
Q Consensus 83 -----s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIi 155 (887)
....++.++ +++...+.. .-..+++-++|+|+|+.. ...+.|...+......+.+|
T Consensus 91 ~eid~~s~~~v~~i-r~l~~~~~~----------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fI 153 (576)
T PRK14965 91 FEIDGASNTGVDDI-RELRENVKY----------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFI 153 (576)
T ss_pred eeeeccCccCHHHH-HHHHHHHHh----------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 001111111 111111100 001234557889999754 34666666665555567776
Q ss_pred EEeCC-hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 156 ITTRD-RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 156 iTTR~-~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
++|.+ ..+.... .....++++.++.++..+.+...+-..+.. --.+....+++.++|..
T Consensus 154 l~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~l 214 (576)
T PRK14965 154 FATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSM 214 (576)
T ss_pred EEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCH
Confidence 65544 4444332 234678899999998887776654222211 12355677888888865
No 172
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=3.9e-05 Score=90.87 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=70.0
Q ss_pred CCCcEEEeeCCCCC-CCCchhhc-CCCCCceeeccCccCc--cCCccccCCCCCCEEEccccCCCcccccccccCCCccc
Q 045202 508 KSLGILSIDGCSNL-QRLPEELG-NLQALDSLHAVGTAIT--EVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLL 583 (887)
Q Consensus 508 ~~L~~L~L~~~~~~-~~~p~~l~-~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 583 (887)
.+|++|+++|.... ...|..++ .+|+|+.|.+++-.+. ++..-..++++|..||+++.++... ..++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46778888775433 22333333 3677777777665543 2233345566666777766655433 3456666666
Q ss_pred EEecccCCCCCcc--ccccCCCCCcEEEcCCCCCcccch-------hhhcCCCccEeeccccc
Q 045202 584 DLSLNDCCIMELP--ESLGLLSSVRELHLNGNNFERIPE-------SIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 584 ~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l~~lp~-------~l~~l~~L~~L~L~~c~ 637 (887)
.|.+.+-.+..-. ..+..|++|+.||+|.......+. .-..||+|+.||.++..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6666665555422 245566666777766654332221 11236666666666543
No 173
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.0026 Score=69.23 Aligned_cols=180 Identities=18% Similarity=0.213 Sum_probs=110.3
Q ss_pred HHHhhcccCCCCCCCcccccccHHHHHHhHhcC--CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccce--EEEccccHH
Q 045202 6 ILKRLDDTFQSETNDLVGVELPMKEIESLLRSG--STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAG--SYFANNVRE 81 (887)
Q Consensus 6 ~~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~ 81 (887)
....+..+ ..+..++||+.+++.+.+++... .+..+-+-|.|-+|.|||.+...++.+....... ++.+. +
T Consensus 139 ~~~~l~~t--~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in---c 213 (529)
T KOG2227|consen 139 RSESLLNT--APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN---C 213 (529)
T ss_pred HHHHHHhc--CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe---e
Confidence 33444443 34668999999999999998753 3556789999999999999999999876544333 24442 2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCc--eEEEEEecCCCHHH--HHHHhcCCCCC-CCCcEEEE
Q 045202 82 AEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRK--KVLIVFYDVNHPRQ--IEFLVGRLDLF-ASGSRIII 156 (887)
Q Consensus 82 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~k--k~LiVlDdv~~~~~--~~~l~~~~~~~-~~gsrIii 156 (887)
.+- .....+...|++.+...........+....+.+...+. -+++|+|..|.... -+.+...+.|. -+++|+|+
T Consensus 214 ~sl-~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iL 292 (529)
T KOG2227|consen 214 TSL-TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIIL 292 (529)
T ss_pred ccc-cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeee
Confidence 221 23346777777776433322222222234444444433 58999999875432 22333344443 36777765
Q ss_pred EeCChhh------hhhcC-----CCceEecCCCChHHHHHHHHHhh
Q 045202 157 TTRDRQL------LTNCG-----VDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 157 TTR~~~v------~~~~~-----~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
.---..+ +.... ..+....++-+.++-.+++..+.
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 4321111 11111 24678888999999999998887
No 174
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.49 E-value=0.00097 Score=67.48 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=41.0
Q ss_pred CCCCCCCcccccccHHHHHHhH---hcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 14 FQSETNDLVGVELPMKEIESLL---RSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.+...++++|.|.+.++|.+=. ..+. ...-+-+||..|+|||++++++.++...+-
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 3445578999999998876422 2222 334577899999999999999998766544
No 175
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00023 Score=68.73 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=39.6
Q ss_pred CCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCc--cccCCCCCCEEEc
Q 045202 485 KLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPP--SIVRLKRVRGIYL 562 (887)
Q Consensus 485 ~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L 562 (887)
+...+||++|.+ ..++ .|..++.|++|.+++|.+...-|..-.-+++|..|.|.+|+|.++.+ .+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl-~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccch-hhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666542 2222 24455666666666666555555444445556666666665554422 2334444444444
Q ss_pred ccc
Q 045202 563 GRN 565 (887)
Q Consensus 563 ~~n 565 (887)
-+|
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 333
No 176
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00077 Score=68.58 Aligned_cols=177 Identities=17% Similarity=0.186 Sum_probs=105.6
Q ss_pred CCCCCCcccccccHHHHHHhHhcC---CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG---STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||-+.-.++|.-++... ....--|.++|++|.||||||..+.+++...+....== ...++.++..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp----~leK~gDlaai 97 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP----ALEKPGDLAAI 97 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc----cccChhhHHHH
Confidence 455678999999888888777642 23355789999999999999999999877655422100 01111121111
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHH--HHHHhcCCCC--------CCCCcE--------
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQ--IEFLVGRLDL--------FASGSR-------- 153 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~--~~~l~~~~~~--------~~~gsr-------- 153 (887)
+ ..|.. .=.+++|.+..... -|.|.+...+ .++++|
T Consensus 98 L-------------------------t~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 98 L-------------------------TNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred H-------------------------hcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 11222 22456677753211 1222222211 134444
Q ss_pred ---EEEEeCChhhhhhcC--CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 154 ---IIITTRDRQLLTNCG--VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 154 ---IiiTTR~~~v~~~~~--~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
|=.|||.-.+..... -.-+.+++.-+.+|-.+...+.|-.-+ .+--.+-+.+|+++.+|-|--..-+-
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHH
Confidence 446888765544331 234788899999999999999883222 12234678899999999995544333
No 177
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=0.00057 Score=79.82 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=44.2
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCC---CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGS---TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|...++++|-+..++++..++.... ...+++.|+|++|+||||+|+.+...+.
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35566789999999999999987543 2346899999999999999999988653
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.35 E-value=0.00038 Score=65.51 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=26.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..+.|+|.+|+||||+|+.+...+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4689999999999999999998766554334444
No 179
>PRK12377 putative replication protein; Provisional
Probab=97.32 E-value=0.00083 Score=69.53 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=29.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
...+.++|.+|+|||+||.++.+.+..+...+.++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 45799999999999999999999887665556666
No 180
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.30 E-value=0.0033 Score=76.59 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=96.1
Q ss_pred CCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-HhcC
Q 045202 19 NDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EETG 86 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~~~ 86 (887)
+++.|.+...++|.+.+.. +-...+-|.++|++|+|||++|+++.+.....|- .+. ..+. +...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~~~l~~~~v 528 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-GPEILSKWV 528 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hHHHhhccc
Confidence 5678888888888776542 1123456889999999999999999998665442 111 0011 1100
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--------------HHHHHHhcCCCCC--C
Q 045202 87 R-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--------------RQIEFLVGRLDLF--A 149 (887)
Q Consensus 87 ~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--------------~~~~~l~~~~~~~--~ 149 (887)
+ .....+ ......-...+.+|++|+++.. .....+...++.. .
T Consensus 529 Gese~~i~--------------------~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 529 GESEKAIR--------------------EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred CcHHHHHH--------------------HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 0 001111 1122222456789999998632 1123333333321 2
Q ss_pred CCcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCCh
Q 045202 150 SGSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 150 ~gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 216 (887)
.+-.||.||...+..... .-+..+.++..+.++-.++|..+.-+... +..++ ..+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 344566677655443221 24678999999999999999876633221 12233 44556677655
No 181
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0048 Score=66.59 Aligned_cols=191 Identities=11% Similarity=0.083 Sum_probs=107.6
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc---------------cceEEEccccHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH---------------SAGSYFANNVREAE 83 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~~~~~s 83 (887)
++++|-+..++.+...+..+. -....-++|..|+||+++|.++.+.+-.. ++-..|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 578999999999999887542 23688999999999999999988764211 1222333211000
Q ss_pred hcCCHHHHHHHHHHHHh--cCCCCCCCcccchHHHHHhh-----CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEE
Q 045202 84 ETGRLGDLRQQLLSTLL--NDGNVKSFPNIGLNFQSKRL-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRI 154 (887)
Q Consensus 84 ~~~~~~~l~~~il~~l~--~~~~~~~~~~~~~~~~~~~l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrI 154 (887)
.... +-...+...+ .........+ .++.+.+.+ .+++-++|+|+++.. .....|...+.... .+.+
T Consensus 82 ~g~~---~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKL---ITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccc---cchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0000 0000001110 0000001111 122333333 345668899999754 34556665554444 4455
Q ss_pred EEEeC-Chhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 155 IITTR-DRQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 155 iiTTR-~~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
|++|. ...+.... ...+.+++++++.++..+.+....-.. . .......++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~--~---~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE--I---LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc--c---chhHHHHHHHHcCCCHHHHHH
Confidence 55554 44444433 335799999999999999998765211 1 111235788999999966543
No 182
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.29 E-value=0.0042 Score=65.00 Aligned_cols=201 Identities=13% Similarity=0.054 Sum_probs=113.7
Q ss_pred CCccccc---ccHHHHHHhHhcCC-CCeeEEEEEcCCCcchHHHHHHHHHHHhcccce------EEEccccHHHHhcCCH
Q 045202 19 NDLVGVE---LPMKEIESLLRSGS-TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAG------SYFANNVREAEETGRL 88 (887)
Q Consensus 19 ~~~vGr~---~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~------~~~~~~~~~~s~~~~~ 88 (887)
+..||-. .-+++|.+++.... ....-+.|+|.+|+|||++++...+..-..++. ++.+ +.-...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCCh
Confidence 4556643 33456667666543 344668999999999999999988743323321 2222 34456788
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCc-eEEEEEecCCCH------HH--HHHHhcCCCCCCCCcEEEEEeC
Q 045202 89 GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRK-KVLIVFYDVNHP------RQ--IEFLVGRLDLFASGSRIIITTR 159 (887)
Q Consensus 89 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~k-k~LiVlDdv~~~------~~--~~~l~~~~~~~~~gsrIiiTTR 159 (887)
.++...|+.++...-................++.- -=+||+|++.+. +| .-.....+...-.-+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 89999999999877555444444444444444433 338899999653 11 1111112222223455666665
Q ss_pred Chhhhhhc-----CCCceEecCCCChHHH-HHHHHHhh--cC-CCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 160 DRQLLTNC-----GVDEKYQMKELVHADA-LKLFSRHA--FG-GDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 160 ~~~v~~~~-----~~~~~~~v~~L~~~~a-~~Lf~~~a--f~-~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
+..-+-.. +.-..+.++....++- ..|+.... +. .....-...++++.|...++|+.--+..+-
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 43332211 1124566666655543 44432221 11 111223457899999999999876655443
No 183
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.00076 Score=70.75 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=28.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.-+.++|.+|+|||.||.++.+.+..+...+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 3489999999999999999999876665556676
No 184
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.28 E-value=0.0036 Score=71.34 Aligned_cols=174 Identities=17% Similarity=0.080 Sum_probs=92.5
Q ss_pred CCcccccccHHHHHHhHhc--------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-HhcCCH-
Q 045202 19 NDLVGVELPMKEIESLLRS--------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EETGRL- 88 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~--------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~~~~~- 88 (887)
+++.|.+.-.+.+...... +-...+-|.++|++|+|||.+|+++.++....|-. + +.... +...+-
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~---l-~~~~l~~~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR---L-DVGKLFGGIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---E-EhHHhcccccChH
Confidence 5677877666655543211 11235678999999999999999999976544321 1 11010 000010
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--------------HHHHHhcCCCCCCCCcEE
Q 045202 89 GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--------------QIEFLVGRLDLFASGSRI 154 (887)
Q Consensus 89 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--------------~~~~l~~~~~~~~~gsrI 154 (887)
..-.+++ ++..-...+++|++|+++..- .+..+...+.....+--|
T Consensus 304 e~~l~~~--------------------f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 304 ESRMRQM--------------------IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred HHHHHHH--------------------HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 0111111 111223468899999996321 011122212222233445
Q ss_pred EEEeCChhhh-----hhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH
Q 045202 155 IITTRDRQLL-----TNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL 217 (887)
Q Consensus 155 iiTTR~~~v~-----~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 217 (887)
|.||...... +.-.-+..+.++..+.++-.++|..+.-+.. +...-......+++.+.|.--
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSG 430 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSG 430 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCH
Confidence 5677654432 2123467899999999999999988874422 111001123456666666553
No 185
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.27 E-value=0.00055 Score=75.73 Aligned_cols=105 Identities=20% Similarity=0.180 Sum_probs=64.0
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc--ccceEEEccccHHHHhcCCHHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR--HSAGSYFANNVREAEETGRLGDLRQQLL 96 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~~~~~~~~s~~~~~~~l~~~il 96 (887)
.++++.+..++.+...|... +.|.++|++|+||||+|+++++.+.. .++...|+ .++..++..++...+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V----tFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV----QFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE----eecccccHHHHhcccC
Confidence 56788888899988888743 35888999999999999999987643 45566666 4445544444432110
Q ss_pred HHHhcCCCCCC-CcccchHHHHHhh--CCceEEEEEecCCCH
Q 045202 97 STLLNDGNVKS-FPNIGLNFQSKRL--TRKKVLIVFYDVNHP 135 (887)
Q Consensus 97 ~~l~~~~~~~~-~~~~~~~~~~~~l--~~kk~LiVlDdv~~~ 135 (887)
.....-. ......+.+++.. .++++++|+|+++..
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000000 0011122333322 246899999999643
No 186
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.25 E-value=0.0042 Score=66.57 Aligned_cols=153 Identities=21% Similarity=0.207 Sum_probs=82.6
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-HhcC-CHHHHHHHHHHHHhcCCCCCCCcccchHHHH
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EETG-RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQS 117 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~~~-~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~ 117 (887)
.-.+.++|||++|+|||.+|+++++++...| +-+ ...+. +... .-....++++......
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~v-sa~eL~sk~vGEsEk~IR~~F~~A~~~--------------- 206 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVM-SAGELESENAGEPGKLIRQRYREAADI--------------- 206 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEE-EHHHhhcCcCCcHHHHHHHHHHHHHHH---------------
Confidence 3468999999999999999999999876654 122 11122 1211 2224444444332110
Q ss_pred HhhCCceEEEEEecCCCH------------HHH--HHHhcCC--------C--C----CCCCcEEEEEeCChhhhhhc--
Q 045202 118 KRLTRKKVLIVFYDVNHP------------RQI--EFLVGRL--------D--L----FASGSRIIITTRDRQLLTNC-- 167 (887)
Q Consensus 118 ~~l~~kk~LiVlDdv~~~------------~~~--~~l~~~~--------~--~----~~~gsrIiiTTR~~~v~~~~-- 167 (887)
.+-+++.+.|++||+|.. .+. ..|+... + | ...+-.||+||.+.......
T Consensus 207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 012468899999998621 111 1222111 1 1 23456778888776653321
Q ss_pred ---CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH
Q 045202 168 ---GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL 217 (887)
Q Consensus 168 ---~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 217 (887)
.-+..|. .-+.++-.+++..+.-+ .... ..-..++++...|-|+
T Consensus 287 RpGRfDk~i~--lPd~e~R~eIL~~~~r~-~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 287 RDGRMEKFYW--APTREDRIGVVHGIFRD-DGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCCceeC--CCCHHHHHHHHHHHhcc-CCCC---HHHHHHHHHcCCCCCc
Confidence 1234443 45666667777655522 2221 2344456666666654
No 187
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00054 Score=66.19 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=66.3
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCC-chhhcCCCCCceeec
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRL-PEELGNLQALDSLHA 539 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~L 539 (887)
.+...++|++|.+..++. +..+++|.+|.|.+|.+...-|.--.-+++|+.|.+.+|++...- -+-+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 355566666666665543 566778888888887776666654445677888888887754321 123566778888888
Q ss_pred cCccCccCCc----cccCCCCCCEEEcc
Q 045202 540 VGTAITEVPP----SIVRLKRVRGIYLG 563 (887)
Q Consensus 540 ~~n~i~~lp~----~l~~l~~L~~L~L~ 563 (887)
-+|.+++-.. .+..+++|+.||+.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehh
Confidence 8888774432 45566666666663
No 188
>PRK09183 transposase/IS protein; Provisional
Probab=97.23 E-value=0.00092 Score=70.17 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=25.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..+.|+|.+|+|||+||.++......+-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999988654443344455
No 189
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.011 Score=64.97 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=90.1
Q ss_pred CcccccccHHH-HHHhHhcC-CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccce--EEEccccHHHHhcCCHHHHHHHH
Q 045202 20 DLVGVELPMKE-IESLLRSG-STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAG--SYFANNVREAEETGRLGDLRQQL 95 (887)
Q Consensus 20 ~~vGr~~~~~~-l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~s~~~~~~~l~~~i 95 (887)
.++|-..+... +....... ......+-|||..|.|||.|++++.+......+. ...+. .......+
T Consensus 89 Fv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~----------se~f~~~~ 158 (408)
T COG0593 89 FVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT----------SEDFTNDF 158 (408)
T ss_pred eeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc----------HHHHHHHH
Confidence 35666555443 22223222 2235689999999999999999999988777763 33441 12333333
Q ss_pred HHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------HHHHHHhcCCCCCCCCcEEEEEeCC--------
Q 045202 96 LSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------RQIEFLVGRLDLFASGSRIIITTRD-------- 160 (887)
Q Consensus 96 l~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------~~~~~l~~~~~~~~~gsrIiiTTR~-------- 160 (887)
...+.. ......++.. .-=++++||++.. +.+-.+...+. ..|-.||+|++.
T Consensus 159 v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 159 VKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccc
Confidence 333322 1245555555 3348889999632 11222222222 244489999863
Q ss_pred -hhhhhhcCCCceEecCCCChHHHHHHHHHhhcC
Q 045202 161 -RQLLTNCGVDEKYQMKELVHADALKLFSRHAFG 193 (887)
Q Consensus 161 -~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~ 193 (887)
+.+.......-++++.+++.+.....+.+++-.
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 223333344579999999999999999887643
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.21 E-value=0.0012 Score=67.56 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=73.9
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH-H-hcccceEEEccccHHHHh-----cCCHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK-I-SRHSAGSYFANNVREAEE-----TGRLGDL 91 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~s~-----~~~~~~l 91 (887)
..+.++......+..++.. ..+|.+.|.+|+|||+||.++..+ + ...|+..+.....-...+ +.++.+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4577788888888888863 248999999999999999998874 3 444554433321111111 1112111
Q ss_pred H----HHH---HHHHhcCCCCC--C--CcccchHHHHHhhCCceE---EEEEecCCCH--HHHHHHhcCCCCCCCCcEEE
Q 045202 92 R----QQL---LSTLLNDGNVK--S--FPNIGLNFQSKRLTRKKV---LIVFYDVNHP--RQIEFLVGRLDLFASGSRII 155 (887)
Q Consensus 92 ~----~~i---l~~l~~~~~~~--~--~~~~~~~~~~~~l~~kk~---LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIi 155 (887)
. +-+ +..+.+..... . ......-.--..++++.+ +||+|++.+. .+...+.. ..+.+|+||
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCCCEEE
Confidence 1 111 11111110000 0 000000000134566554 9999999754 44555544 357899999
Q ss_pred EEeCChh
Q 045202 156 ITTRDRQ 162 (887)
Q Consensus 156 iTTR~~~ 162 (887)
+|--..+
T Consensus 208 ~~GD~~Q 214 (262)
T PRK10536 208 VNGDITQ 214 (262)
T ss_pred EeCChhh
Confidence 9875543
No 191
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0034 Score=62.92 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=103.8
Q ss_pred CCCCcccccccHHH---HHHhHhcCC----CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHH
Q 045202 17 ETNDLVGVELPMKE---IESLLRSGS----TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLG 89 (887)
Q Consensus 17 ~~~~~vGr~~~~~~---l~~~L~~~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~ 89 (887)
..+++||-+....+ |+++|.... -..+-|..+|++|.|||-+|+++.++.+..|-. +. . .
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~---vk----a------t 185 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLL---VK----A------T 185 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEE---ec----h------H
Confidence 44789999877654 678887532 246789999999999999999999976644421 11 0 1
Q ss_pred HHHHHHHHHHhcCCCCCCCcccchHHHH----HhhCCceEEEEEecCCCH--------------HHHHHHhcCCCC--CC
Q 045202 90 DLRQQLLSTLLNDGNVKSFPNIGLNFQS----KRLTRKKVLIVFYDVNHP--------------RQIEFLVGRLDL--FA 149 (887)
Q Consensus 90 ~l~~~il~~l~~~~~~~~~~~~~~~~~~----~~l~~kk~LiVlDdv~~~--------------~~~~~l~~~~~~--~~ 149 (887)
++..+- . .++...++ +.-+..++.+++|..+-. +....|+..++. .+
T Consensus 186 ~liGeh----V---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en 252 (368)
T COG1223 186 ELIGEH----V---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN 252 (368)
T ss_pred HHHHHH----h---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC
Confidence 111111 0 11122222 223456899999988632 224455555542 34
Q ss_pred CCcEEEEEeCChhhhhhc---CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 150 SGSRIIITTRDRQLLTNC---GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 150 ~gsrIiiTTR~~~v~~~~---~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
.|-..|-.|....++... .-.+-++...-+++|-.+++..++-.-.-|.+. -.+.++++.+|+.
T Consensus 253 eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~S 319 (368)
T COG1223 253 EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGMS 319 (368)
T ss_pred CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCCC
Confidence 566777777776665432 124567788889999999999988332222221 1456666677654
No 192
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.21 E-value=0.004 Score=75.90 Aligned_cols=175 Identities=16% Similarity=0.116 Sum_probs=95.3
Q ss_pred CCCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-Hh
Q 045202 17 ETNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EE 84 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~ 84 (887)
..+++.|.+..++++.+++... -...+.|.++|.+|+||||+|+++.+.....| +.+. ..+. +.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 3456899999999998876421 12345688999999999999999998775443 1221 1111 11
Q ss_pred cCCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------------HHHHHHhcCCCCC-C
Q 045202 85 TGRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------------RQIEFLVGRLDLF-A 149 (887)
Q Consensus 85 ~~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------------~~~~~l~~~~~~~-~ 149 (887)
..+. ..-.+ ..+.......+.+|++|+++.. .....+...+... .
T Consensus 252 ~~g~~~~~l~--------------------~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~ 311 (733)
T TIGR01243 252 YYGESEERLR--------------------EIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG 311 (733)
T ss_pred cccHHHHHHH--------------------HHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc
Confidence 1110 01111 1122223345678999998542 1122333322221 2
Q ss_pred CCcEEEE-EeCChh-hhhhc----CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 150 SGSRIII-TTRDRQ-LLTNC----GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 150 ~gsrIii-TTR~~~-v~~~~----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
.+..++| ||.... +.... .-+..+.+...+.++..+++..+.-+.... + ......+++.+.|..-|
T Consensus 312 ~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 312 RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-E--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-c--ccCHHHHHHhCCCCCHH
Confidence 3444444 444332 11111 124578888889999888888655221111 1 12245677777776543
No 193
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.20 E-value=0.0034 Score=77.14 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=40.0
Q ss_pred CCCcccccccHHHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 18 TNDLVGVELPMKEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.+.++|.+..+++|...+.... ....++.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4568999999999888776321 12347889999999999999999986643
No 194
>PRK06526 transposase; Provisional
Probab=97.19 E-value=0.00073 Score=70.51 Aligned_cols=35 Identities=23% Similarity=0.199 Sum_probs=26.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..-+.++|.+|+|||+||.++..+...+-..+.|+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 34689999999999999999988765443334444
No 195
>PRK06921 hypothetical protein; Provisional
Probab=97.09 E-value=0.0011 Score=69.80 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFAN 77 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 77 (887)
...+.++|..|+|||+||.++.+.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4579999999999999999999987665 45556763
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.09 E-value=0.012 Score=62.13 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=27.0
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
+++..++..+ +-|.++|.+|+|||++|+++.......|
T Consensus 12 ~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg~~~ 49 (262)
T TIGR02640 12 SRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDRPV 49 (262)
T ss_pred HHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 4444444422 3467899999999999999988654444
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.03 E-value=0.0036 Score=63.89 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=29.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
-.++|+|..|.||||++..+......+|..+..+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 3578999999999999999999899999766655
No 198
>PRK08118 topology modulation protein; Reviewed
Probab=97.03 E-value=0.00046 Score=67.30 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=26.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh---cccceEEEc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS---RHSAGSYFA 76 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~ 76 (887)
.|.|+|++|+||||+|+.++++.. -+|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 589999999999999999999754 346666653
No 199
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.03 E-value=0.03 Score=56.74 Aligned_cols=177 Identities=16% Similarity=0.128 Sum_probs=99.0
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR 119 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~ 119 (887)
++.+++.++|.-|.|||+++|++....-+.=-+.+.+. .+..+...+...++.++.. ++..........+.+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~--~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLES--QPKVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhcc--CccchhHHHHHHHHHH
Confidence 45579999999999999999965543221111222331 2234455677777777655 3333333233333333
Q ss_pred h-----CCce-EEEEEecCCCH--HHHHHHhc--CC-CCC-CCCcEEEEEe-------CChhhhhhcCCCce-EecCCCC
Q 045202 120 L-----TRKK-VLIVFYDVNHP--RQIEFLVG--RL-DLF-ASGSRIIITT-------RDRQLLTNCGVDEK-YQMKELV 179 (887)
Q Consensus 120 l-----~~kk-~LiVlDdv~~~--~~~~~l~~--~~-~~~-~~gsrIiiTT-------R~~~v~~~~~~~~~-~~v~~L~ 179 (887)
| ++++ +.+++||..+. ++++.+.- .+ ... ++-+.+++-- |-......-....+ |++++++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 2 5677 99999998643 33443321 11 111 1222232211 11111111112234 9999999
Q ss_pred hHHHHHHHHHhhcCCCCCCccH-HHHHHHHHHhhCCChHHHHHHH
Q 045202 180 HADALKLFSRHAFGGDHPYESH-TELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 180 ~~~a~~Lf~~~af~~~~~~~~~-~~l~~~i~~~~~GlPLal~~lg 223 (887)
.++...++.++.-+...+.+-+ .+....|....+|.|.++..+.
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 9988888777664443333323 3556678888999999998776
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0032 Score=65.10 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=34.7
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+..+.++...-......+.++|.+|+|||+||.++.+.+..+-..++++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3444444443223345789999999999999999999876665556666
No 201
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0037 Score=71.65 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=92.8
Q ss_pred CCcccccccHHHHHHhHhcC----CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSG----STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
++-+|.++..++|.++|.-. ...-.+++++|++|||||.||+.|++-+.+.|-. +-+.-+|+.+.=.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAEIRG------- 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAEIRG------- 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHHhcc-------
Confidence 46789999999999988642 2233699999999999999999999988888853 33433444332111
Q ss_pred HHHHHhcCCCCCCCcccchHHHH---HhhCCceEEEEEecCCCHHH------HHHHhcCCCC-----C--------CCCc
Q 045202 95 LLSTLLNDGNVKSFPNIGLNFQS---KRLTRKKVLIVFYDVNHPRQ------IEFLVGRLDL-----F--------ASGS 152 (887)
Q Consensus 95 il~~l~~~~~~~~~~~~~~~~~~---~~l~~kk~LiVlDdv~~~~~------~~~l~~~~~~-----~--------~~gs 152 (887)
. ...-.......+- +....+.-+++||.+|.... -.+|+..++. | --=|
T Consensus 395 -------H--RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 395 -------H--RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -------c--cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 0 0100111112222 22245667999999974421 2222222211 0 0124
Q ss_pred EEE-EEeCC-hh-h-hhhcCCCceEecCCCChHHHHHHHHHhhc
Q 045202 153 RII-ITTRD-RQ-L-LTNCGVDEKYQMKELVHADALKLFSRHAF 192 (887)
Q Consensus 153 rIi-iTTR~-~~-v-~~~~~~~~~~~v~~L~~~~a~~Lf~~~af 192 (887)
.|+ |||-+ -+ + +......+++++.+-+++|-.++-++|..
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 444 44443 22 1 12233457999999999999998887763
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.98 E-value=0.0078 Score=74.34 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCCcccccccHHHHHHhHhcCC------C-CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 18 TNDLVGVELPMKEIESLLRSGS------T-NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~------~-~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
...++|.+..++.+...+.... . ...++.++|+.|+|||++|+++.......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3569999999999998887421 1 23568899999999999999999876443
No 203
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.96 E-value=0.023 Score=62.25 Aligned_cols=44 Identities=14% Similarity=0.353 Sum_probs=36.3
Q ss_pred ccHHHHHHhHhcCC-CCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 26 LPMKEIESLLRSGS-TNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 26 ~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.-.+.|.+.+...+ ....+|||.|.-|+||||+.+.+.+++...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34567777777654 667899999999999999999999987766
No 204
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.93 E-value=0.012 Score=71.50 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=39.4
Q ss_pred CCCcccccccHHHHHHhHhcC------C-CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 18 TNDLVGVELPMKEIESLLRSG------S-TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+.++|.+..++.+...+... . ....++.++|+.|+|||++|+++...+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356899999999988877642 1 1234688999999999999999998764
No 205
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0065 Score=66.57 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=83.8
Q ss_pred CcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc---------------------ceEEEccc
Q 045202 20 DLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS---------------------AGSYFANN 78 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f---------------------~~~~~~~~ 78 (887)
.++|-+....++..+......-...+-++|++|+||||+|.++.+.+.... +....+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel-- 79 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL-- 79 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe--
Confidence 567888888888888875443344699999999999999999988765322 112222
Q ss_pred cHHHHhcCC---HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHH--HHHHhcCCCCCCCCcE
Q 045202 79 VREAEETGR---LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQ--IEFLVGRLDLFASGSR 153 (887)
Q Consensus 79 ~~~~s~~~~---~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~--~~~l~~~~~~~~~gsr 153 (887)
..+.... ..+..+++.+...... ..++.-+|++|+++.... -..+..........++
T Consensus 80 --~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 80 --NPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred --cccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 1111111 1222333322221110 035677899999986544 4555555555667888
Q ss_pred EEEEeCChh-hhhhc-CCCceEecCCCChHH
Q 045202 154 IIITTRDRQ-LLTNC-GVDEKYQMKELVHAD 182 (887)
Q Consensus 154 IiiTTR~~~-v~~~~-~~~~~~~v~~L~~~~ 182 (887)
+|++|.+.. +.... .....+++++.+..+
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHHH
Confidence 888887433 33222 223566666633333
No 206
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.90 E-value=0.0017 Score=63.82 Aligned_cols=51 Identities=29% Similarity=0.342 Sum_probs=41.6
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|....++||-|+.++++.....++ +..-+.|.||+|+||||-+..+.+++
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEG--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3556678999999999988777643 56668899999999999888887764
No 207
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.87 E-value=0.0098 Score=72.75 Aligned_cols=53 Identities=25% Similarity=0.328 Sum_probs=41.0
Q ss_pred CCcccccccHHHHHHhHhc----CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc
Q 045202 19 NDLVGVELPMKEIESLLRS----GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA 71 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~ 71 (887)
++++|.+...++|.+++.. +...-.++.++|++|+|||++|+++.+.+...|-
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 3578998888888886642 1223357999999999999999999998766654
No 208
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.013 Score=68.78 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=108.1
Q ss_pred CCCCCcccccccHHHHHHh---HhcC-------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhc
Q 045202 16 SETNDLVGVELPMKEIESL---LRSG-------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEET 85 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~---L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~ 85 (887)
...+++.|.|+..++|++. |... ..-++=+-++|++|+|||-||++++-+..-.| +. +|..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF-----~s----vSGS 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FS----VSGS 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCce-----ee----echH
Confidence 3457899998877776654 4432 23367789999999999999999988644333 21 1110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-----------------HHHHHHhcCCCCC
Q 045202 86 GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-----------------RQIEFLVGRLDLF 148 (887)
Q Consensus 86 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-----------------~~~~~l~~~~~~~ 148 (887)
+ +.+...+.. .....+.....-...+.+|.+|+++.. ..+..|....+-+
T Consensus 379 ----E----FvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 ----E----FVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ----H----HHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 0 111111100 000011112222345678888877421 1266666666655
Q ss_pred CCCcEE--EEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 149 ASGSRI--IITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 149 ~~gsrI--iiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
..++.| +-+|...+++... .-+..+.++.-+.....++|.-|+-+.... .+..++++ ++...-|.+=|-
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 544433 3355555543321 347789999999999999999999554433 45667777 889999988665
No 209
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.86 E-value=0.00071 Score=66.62 Aligned_cols=35 Identities=34% Similarity=0.368 Sum_probs=26.6
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
-.-+.++|..|+|||.||.++.+++..+-..+.|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 35699999999999999999998766554556677
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.0012 Score=71.26 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCcccccccHHHHHHhHhcCC----CCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 19 NDLVGVELPMKEIESLLRSGS----TNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
++++|+++.++++++++.... ...++++++|++|+||||||+++.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 389999999999999987532 34589999999999999999999886543
No 211
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.81 E-value=0.0032 Score=65.65 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=55.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCC----CCcc--------
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVK----SFPN-------- 110 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~----~~~~-------- 110 (887)
..++|.|.+|+||||||+.++++++.+|+..+++..+.+-.. .+.++.+++...-..+.... .+..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~--Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR--EGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH--HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 468999999999999999999999888887888765543322 23345444443210000000 1110
Q ss_pred cchHHHHHhh---CCceEEEEEecCCCH
Q 045202 111 IGLNFQSKRL---TRKKVLIVFYDVNHP 135 (887)
Q Consensus 111 ~~~~~~~~~l---~~kk~LiVlDdv~~~ 135 (887)
...-.+-+++ .++.+|+++||+-..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 0111223444 389999999998543
No 212
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.018 Score=65.61 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=87.3
Q ss_pred CcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC-C
Q 045202 20 DLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG-R 87 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~-~ 87 (887)
++=|.|+-..+|.+.... +-...+-|-.+|++|.||||+|+++.++..-.|-.+--- .-.|... .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp---EL~sk~vGe 511 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP---ELFSKYVGE 511 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCH---HHHHHhcCc
Confidence 344466555566644432 224567899999999999999999999877666433100 0011111 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------------HHHHHHhcCCCCCCCCcEE
Q 045202 88 LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------------RQIEFLVGRLDLFASGSRI 154 (887)
Q Consensus 88 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------------~~~~~l~~~~~~~~~gsrI 154 (887)
-.+..++++++. -+-...+|+||.+|.. ..+..|+...+-......|
T Consensus 512 SEr~ir~iF~kA--------------------R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 512 SERAIREVFRKA--------------------RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred hHHHHHHHHHHH--------------------hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 123334444332 2234578888887532 1244555555544444333
Q ss_pred EE---EeCChhhhhh-c---CCCceEecCCCChHHHHHHHHHhhcC
Q 045202 155 II---TTRDRQLLTN-C---GVDEKYQMKELVHADALKLFSRHAFG 193 (887)
Q Consensus 155 ii---TTR~~~v~~~-~---~~~~~~~v~~L~~~~a~~Lf~~~af~ 193 (887)
+| |-|...+-.. + .-++++.|+.-+.+.-.++|+.++-+
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 33 3343333222 2 25788899988888889999999944
No 213
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.79 E-value=0.0077 Score=62.92 Aligned_cols=183 Identities=18% Similarity=0.130 Sum_probs=101.0
Q ss_pred HHhhcccCCCCCCCcccccccHHHHHHhHhcCC--CCeeEEEEEcCCCcchHHHHHHHHHH---HhcccceEEEccccHH
Q 045202 7 LKRLDDTFQSETNDLVGVELPMKEIESLLRSGS--TNVCTLGIWGIGGIGKTTIAGAIFNK---ISRHSAGSYFANNVRE 81 (887)
Q Consensus 7 ~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~ 81 (887)
++.|....-.+.-.++|-.++..++..++...- .+-.-|.|+|+.|.|||+|...+..+ +.++|-.+---..+
T Consensus 12 qr~l~~rl~~~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~-- 89 (408)
T KOG2228|consen 12 QRILRERLCGPHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGEL-- 89 (408)
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccc--
Confidence 333333333345689999999999999887531 23345789999999999987666554 44444322211111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC------CceEEEEEecCCCH----HH--HHHHhc-CCCCC
Q 045202 82 AEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT------RKKVLIVFYDVNHP----RQ--IEFLVG-RLDLF 148 (887)
Q Consensus 82 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~------~kk~LiVlDdv~~~----~~--~~~l~~-~~~~~ 148 (887)
..++--+..|.+|+..++........+..+....+-..|+ +-++.+|+|..|-. .| +-.+.. .-...
T Consensus 90 ~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r 169 (408)
T KOG2228|consen 90 QTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSAR 169 (408)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcC
Confidence 1122334566666655554432223444444445544443 34799999988643 22 112221 11224
Q ss_pred CCCcEEEEEeCChhhh---hhcC---CCc-eEecCCCChHHHHHHHHHhh
Q 045202 149 ASGSRIIITTRDRQLL---TNCG---VDE-KYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 149 ~~gsrIiiTTR~~~v~---~~~~---~~~-~~~v~~L~~~~a~~Lf~~~a 191 (887)
.|-+-|-+|||-..+. +.+. ... ++-.+.++-++..++++.-.
T Consensus 170 ~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 170 APICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 5667778999954332 2221 222 55666677677666665543
No 214
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.023 Score=62.05 Aligned_cols=158 Identities=10% Similarity=0.082 Sum_probs=86.6
Q ss_pred CCccc-ccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc-c-cceEEEccccHHHHhcCCHHHHHHHH
Q 045202 19 NDLVG-VELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR-H-SAGSYFANNVREAEETGRLGDLRQQL 95 (887)
Q Consensus 19 ~~~vG-r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~-f~~~~~~~~~~~~s~~~~~~~l~~~i 95 (887)
+.++| -+..++.+...+..+. -....-++|+.|+||||+|+.+.+.+-. . ..... .+.-...+.+
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~-----------cg~C~~c~~~ 72 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP-----------CGTCTNCKRI 72 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-----------CCcCHHHHHH
Confidence 45677 4555667777776432 2457789999999999999999876421 1 11000 0000000000
Q ss_pred HHHHh------cCCCCCCCcccchHHHHHh-----hCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh
Q 045202 96 LSTLL------NDGNVKSFPNIGLNFQSKR-----LTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQ 162 (887)
Q Consensus 96 l~~l~------~~~~~~~~~~~~~~~~~~~-----l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 162 (887)
...-. .........++ +..+.+. ..+.+=++|+|+++.. +....|...+.....++.+|++|.+..
T Consensus 73 ~~~~hpD~~~i~~~~~~i~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 73 DSGNHPDVHLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKH 151 (329)
T ss_pred hcCCCCCEEEeccccccCCHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChH
Confidence 00000 00000000000 1111111 2244556899999754 346667777766667888888876543
Q ss_pred -hhhhc-CCCceEecCCCChHHHHHHHHH
Q 045202 163 -LLTNC-GVDEKYQMKELVHADALKLFSR 189 (887)
Q Consensus 163 -v~~~~-~~~~~~~v~~L~~~~a~~Lf~~ 189 (887)
+.... .....+++..++.++..+.+..
T Consensus 152 ~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 152 QILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 33322 2357899999999999887764
No 215
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.012 Score=65.92 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=101.7
Q ss_pred CCCcccccccHHHHHHhHhcC----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCC
Q 045202 18 TNDLVGVELPMKEIESLLRSG----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGR 87 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~ 87 (887)
.+++=|++..++++.+++..- -...|-|.++|++|.|||.||+++.++..-.|-.+.--
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp----------- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP----------- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch-----------
Confidence 467889999999998877541 12457889999999999999999999876555322211
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--------HH-----HHHHhcCCC---C---C
Q 045202 88 LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--------RQ-----IEFLVGRLD---L---F 148 (887)
Q Consensus 88 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--------~~-----~~~l~~~~~---~---~ 148 (887)
+|.+.+.++ +.+...+...+.-...++++++|++|-. .+ ...|....+ . +
T Consensus 258 ------eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ------EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ------hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 112222211 1111223334445667899999999632 11 222333222 1 1
Q ss_pred CCCcEEEE-EeCChhhhhh---cC-CCceEecCCCChHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 149 ASGSRIII-TTRDRQLLTN---CG-VDEKYQMKELVHADALKLFSRHAFGGD-HPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 149 ~~gsrIii-TTR~~~v~~~---~~-~~~~~~v~~L~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
+.+--||- |+|-..+-.. .| -++-+.+.--++++-.+++...+-+-. ...-++..+|+.---|.|---.|+...
T Consensus 327 g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~ 406 (802)
T KOG0733|consen 327 GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCRE 406 (802)
T ss_pred CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHH
Confidence 23333332 4554333222 22 356777777777777777766654333 223455555544333334444455444
Q ss_pred H
Q 045202 223 H 223 (887)
Q Consensus 223 g 223 (887)
|
T Consensus 407 A 407 (802)
T KOG0733|consen 407 A 407 (802)
T ss_pred H
Confidence 4
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.0051 Score=66.62 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.-+.++|..|+|||+||.++.+.+..+-..++|+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~ 217 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR 217 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 6699999999999999999999876665566677
No 217
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.02 Score=65.49 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=81.4
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-HhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR 119 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~ 119 (887)
..+-|.|.|..|+|||+||+++++.+...- .+++.-+.+. .....+..+|+.+. ..+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~ 490 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEA 490 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHHH-----------------HHHHHH
Confidence 345689999999999999999999876332 3333322222 12233555555442 233456
Q ss_pred hCCceEEEEEecCCCH--------HHHH----HHh----cCCC-CCCCCcE--EEEEeCChhhhhh-c----CCCceEec
Q 045202 120 LTRKKVLIVFYDVNHP--------RQIE----FLV----GRLD-LFASGSR--IIITTRDRQLLTN-C----GVDEKYQM 175 (887)
Q Consensus 120 l~~kk~LiVlDdv~~~--------~~~~----~l~----~~~~-~~~~gsr--IiiTTR~~~v~~~-~----~~~~~~~v 175 (887)
+...+-+|||||++-. .||. .+. .... ....+.+ +|.|....+-... . -.+....+
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 6778899999999632 1121 111 1111 1123444 3334433222211 1 12446788
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCC
Q 045202 176 KELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGV 215 (887)
Q Consensus 176 ~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 215 (887)
+.+..++-.++++.. |.......... ...-+..+|+|.
T Consensus 571 ~ap~~~~R~~IL~~~-~s~~~~~~~~~-dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTI-FSKNLSDITMD-DLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHH-HHhhhhhhhhH-HHHHHHHhcCCc
Confidence 888888777766543 33332211122 222266777763
No 218
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.75 E-value=0.0032 Score=76.28 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=86.4
Q ss_pred CCcccccccHHHHHHhHhcC----CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSG----STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
++.+|.+...++|.++|... ...-.++.++|++|+||||+|+.+...+...|-...+ ..+++. .
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-~~~~d~------~----- 389 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-GGVRDE------A----- 389 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-CCCCCH------H-----
Confidence 35899999999999887731 1234579999999999999999999877665543322 111111 1
Q ss_pred HHHHHhcCCCCC--CCcccchHHHHHhhCCceEEEEEecCCCHHH------HHHHhcCCCC---------------CCCC
Q 045202 95 LLSTLLNDGNVK--SFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQ------IEFLVGRLDL---------------FASG 151 (887)
Q Consensus 95 il~~l~~~~~~~--~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~------~~~l~~~~~~---------------~~~g 151 (887)
++.+..... .........+++. ....-+|+||.++.... .+.+...++. .-..
T Consensus 390 ---~i~g~~~~~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 390 ---EIRGHRRTYIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred ---HhccchhccCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111110000 0011112222221 22344788999964321 2333333221 0123
Q ss_pred cEEEEEeCChhhhhhc-CCCceEecCCCChHHHHHHHHHhh
Q 045202 152 SRIIITTRDRQLLTNC-GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 152 srIiiTTR~~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
.-+|.|+....+.... +.-.+++..+++.+|-.++..++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3344455443332211 233588999999999998887776
No 219
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.74 E-value=0.016 Score=57.87 Aligned_cols=123 Identities=21% Similarity=0.305 Sum_probs=70.9
Q ss_pred CCCCCcccccccHHHHHHhHhc--CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHH
Q 045202 16 SETNDLVGVELPMKEIESLLRS--GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~ 93 (887)
.....++|.|...+.+.+=... ......-|.+||--|+||+.|+|++.+++....-..+=| +..+-..+-.+.+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV----~k~dl~~Lp~l~~ 132 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEV----DKEDLATLPDLVE 132 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEE----cHHHHhhHHHHHH
Confidence 3446799999888887642221 111233478999999999999999999988777653333 1111111112211
Q ss_pred HHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCC---CHHHHHHHhcCCCC---CCCCcEEEEEeCC-hhhhh
Q 045202 94 QLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVN---HPRQIEFLVGRLDL---FASGSRIIITTRD-RQLLT 165 (887)
Q Consensus 94 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~---~~~~~~~l~~~~~~---~~~gsrIiiTTR~-~~v~~ 165 (887)
.+ +.+.+|+.|+.||.. +.+....+...+.- ..+...++..|.+ +++..
T Consensus 133 ----~L-------------------r~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 133 ----LL-------------------RARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188 (287)
T ss_pred ----HH-------------------hcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCccccc
Confidence 11 124689999999994 33345555554432 2234445544444 44433
No 220
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.73 E-value=0.0053 Score=65.96 Aligned_cols=112 Identities=13% Similarity=0.231 Sum_probs=60.8
Q ss_pred HHHHHHhHhcCC--CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 045202 28 MKEIESLLRSGS--TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNV 105 (887)
Q Consensus 28 ~~~l~~~L~~~~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~ 105 (887)
++....++..-. ...+-+.++|..|+|||.||.++.+.+..+-..+.|+. ..++..++.......
T Consensus 140 ~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----------~~~l~~~lk~~~~~~--- 206 (306)
T PRK08939 140 LMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----------FPEFIRELKNSISDG--- 206 (306)
T ss_pred HHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----------HHHHHHHHHHHHhcC---
Confidence 333445554311 13457999999999999999999998765544455662 123444443332211
Q ss_pred CCCcccchHHHHHhhCCceEEEEEecCCC--HHHHHH--HhcCC-CC-CCCCcEEEEEeC
Q 045202 106 KSFPNIGLNFQSKRLTRKKVLIVFYDVNH--PRQIEF--LVGRL-DL-FASGSRIIITTR 159 (887)
Q Consensus 106 ~~~~~~~~~~~~~~l~~kk~LiVlDdv~~--~~~~~~--l~~~~-~~-~~~gsrIiiTTR 159 (887)
. .....+.+. +-=|+||||+.. ...|.. +...+ .. ...+-.+|+||-
T Consensus 207 -----~-~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 -----S-VKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -----c-HHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 0 112222332 345899999953 233432 33322 11 123455777774
No 221
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.032 Score=60.05 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=63.4
Q ss_pred CceEEEEEecCCCHH--HHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCC
Q 045202 122 RKKVLIVFYDVNHPR--QIEFLVGRLDLFASGSRIIITTRDR-QLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHP 197 (887)
Q Consensus 122 ~kk~LiVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~ 197 (887)
+++-++|+|+++... .-..|...+....+++.+|++|.+. .+.... .....+.+..++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 455688999998653 3555666565555788788777753 344333 335688999999999988886531 11
Q ss_pred CccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 198 YESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 198 ~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
...+..++..++|.|+....+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 2336678899999998765544
No 222
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0094 Score=70.32 Aligned_cols=119 Identities=17% Similarity=0.247 Sum_probs=76.0
Q ss_pred CCcccccccHHHHHHhHhcC-------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSG-------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
+.++|-+..++.+.+.+... .....+....|+.|||||-||+++...+...=+..+-+ ++|.. .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~----DMSEy-----~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI----DMSEY-----M 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee----chHHH-----H
Confidence 46899999999998887642 12356778899999999999999988765333333444 22221 1
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceE-EEEEecCC--CHHHHHHHhcCCCC
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKV-LIVFYDVN--HPRQIEFLVGRLDL 147 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~-LiVlDdv~--~~~~~~~l~~~~~~ 147 (887)
-+.-.+.+.+...+-...++ -..+-+..++++| +|.||+|. +.+.++-+...++.
T Consensus 562 EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 11223444444443322222 3445677788887 88899996 45667777766654
No 223
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.69 E-value=0.02 Score=68.41 Aligned_cols=152 Identities=14% Similarity=0.118 Sum_probs=83.9
Q ss_pred CCcccccccHHHHHHhHhcCC----------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCH
Q 045202 19 NDLVGVELPMKEIESLLRSGS----------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRL 88 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~----------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~ 88 (887)
.++.|.+...+++.+.+.... .-.+-|.++|++|+||||+|+++..+....|- .+. . +
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~---~----- 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-G---S----- 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-h---H-----
Confidence 456777777666655443210 11235899999999999999999887665542 111 0 0
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----------------HHHHHhcCCCCCC--C
Q 045202 89 GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----------------QIEFLVGRLDLFA--S 150 (887)
Q Consensus 89 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----------------~~~~l~~~~~~~~--~ 150 (887)
++.... .+. ........+.......+.+|++|+++... .+..+...++.+. .
T Consensus 220 -~~~~~~----~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 220 -DFVEMF----VGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred -HhHHhh----hcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 010000 000 00011112222233467899999986531 1233333333222 3
Q ss_pred CcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhc
Q 045202 151 GSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAF 192 (887)
Q Consensus 151 gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af 192 (887)
+.-||.||..++..... ..+..+.++..+.++-.+++..+.-
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 44555577765543321 2467888999999988999888773
No 224
>PRK07261 topology modulation protein; Provisional
Probab=96.66 E-value=0.0049 Score=60.43 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998753
No 225
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.66 E-value=0.0065 Score=74.50 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=40.2
Q ss_pred CCCcccccccHHHHHHhHhcC-------CCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 18 TNDLVGVELPMKEIESLLRSG-------STNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.+.++|.+..++.+.+.+... .....++.++|+.|+|||.+|+++...+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 357899999999998887531 123457899999999999999999887643
No 226
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0092 Score=67.62 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=108.0
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh----cccc--eEEEccccHHHHhcCC-
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS----RHSA--GSYFANNVREAEETGR- 87 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~f~--~~~~~~~~~~~s~~~~- 87 (887)
|...+++||-+.-...|...+..+. -..--...|.-|+||||+||.+...+- ...+ +.|-. |.+-..+
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~----Ck~I~~g~ 86 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS----CKEINEGS 86 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh----hHhhhcCC
Confidence 3455788999999999999988654 123456689999999999999887431 1111 11111 1111111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchHHHHH---hh-----CCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEE
Q 045202 88 LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSK---RL-----TRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIIT 157 (887)
Q Consensus 88 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~---~l-----~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiT 157 (887)
..++.+ +. .-...+++.+++ .. .+|.=..|+|+|.- ...|..|+..+......-..|+.
T Consensus 87 ~~DviE-----iD------aASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 87 LIDVIE-----ID------AASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred cccchh-----hh------hhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEe
Confidence 111110 00 001123333333 32 34455788999974 45589998888766667777777
Q ss_pred eCChhhh-hh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 158 TRDRQLL-TN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 158 TR~~~v~-~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
|++.+-. .. ....+.|..+.++.++-...+..-+-... ..-..+....|++.+.|..
T Consensus 156 TTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 156 TTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEGSL 214 (515)
T ss_pred cCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCCCh
Confidence 7665442 22 23457899999999987777766663222 2223445566667777744
No 227
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.63 E-value=0.0053 Score=61.80 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=64.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEE-ccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYF-ANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT 121 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~-~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (887)
.+|.|+|..|.||||+++++...+.......++ +.+..+.... .. ..+. .+.....+.....+.++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~~----~~~i----~q~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-SK----RSLI----NQREVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-Cc----ccee----eecccCCCccCHHHHHHHHhc
Confidence 468999999999999999988877655544443 3221110000 00 0000 000111112234566777788
Q ss_pred CceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhh
Q 045202 122 RKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLL 164 (887)
Q Consensus 122 ~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 164 (887)
...=.|++|++.+.+.++..... ...|-.++.|+-.....
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 77889999999887776554433 23455677777655543
No 228
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.62 E-value=0.0072 Score=60.32 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=60.4
Q ss_pred ccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH-H-hcccceEEEccccHHHHhcCC--HHHHHHHH----
Q 045202 24 VELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK-I-SRHSAGSYFANNVREAEETGR--LGDLRQQL---- 95 (887)
Q Consensus 24 r~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~-~-~~~f~~~~~~~~~~~~s~~~~--~~~l~~~i---- 95 (887)
+..+-....+.|. +..++.+.|++|.|||.||.+..-+ + ..+|+..+++...-.+.+.-+ -.++.+++
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 4445556666666 4568999999999999999887753 2 467777777644322211111 01111111
Q ss_pred ---HHHHhcCCCCCCCcccchHHHH----------HhhCCc---eEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEE
Q 045202 96 ---LSTLLNDGNVKSFPNIGLNFQS----------KRLTRK---KVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIIT 157 (887)
Q Consensus 96 ---l~~l~~~~~~~~~~~~~~~~~~----------~~l~~k---k~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiT 157 (887)
...+ ..-. . ....+.+. ..++++ ..+||+|++.+ ..++..+... .+.|||||++
T Consensus 81 ~p~~d~l-~~~~---~-~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~ 152 (205)
T PF02562_consen 81 RPIYDAL-EELF---G-KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIIT 152 (205)
T ss_dssp HHHHHHH-TTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEE
T ss_pred HHHHHHH-HHHh---C-hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEe
Confidence 1111 1000 0 01111111 234554 46999999965 4567777654 5789999999
Q ss_pred eCChhh
Q 045202 158 TRDRQL 163 (887)
Q Consensus 158 TR~~~v 163 (887)
--..+.
T Consensus 153 GD~~Q~ 158 (205)
T PF02562_consen 153 GDPSQI 158 (205)
T ss_dssp E-----
T ss_pred cCceee
Confidence 865443
No 229
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.013 Score=64.64 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=85.0
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR 119 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~ 119 (887)
.....+.+.|++|+|||+||..+.. .+.|+.+--++ ...--++.+-.+-. .......+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS----pe~miG~sEsaKc~---------------~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS----PEDMIGLSESAKCA---------------HIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC----hHHccCccHHHHHH---------------HHHHHHHHh
Confidence 3466788999999999999999876 45676443331 00011111111100 001122333
Q ss_pred hCCceEEEEEecCCCHHHHHH---------------HhcCCCCCCCCcEEEEEeCChhhhhhcCC----CceEecCCCCh
Q 045202 120 LTRKKVLIVFYDVNHPRQIEF---------------LVGRLDLFASGSRIIITTRDRQLLTNCGV----DEKYQMKELVH 180 (887)
Q Consensus 120 l~~kk~LiVlDdv~~~~~~~~---------------l~~~~~~~~~gsrIiiTTR~~~v~~~~~~----~~~~~v~~L~~ 180 (887)
-+..--.||+||+...-+|-. +....|..++.--|+-||....+++.|+. +..|.|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 345556899999976544422 22223333344446668888899998864 46899999988
Q ss_pred -HHHHHHHHHhh-cCCCCCCccHHHHHHHHHHhh
Q 045202 181 -ADALKLFSRHA-FGGDHPYESHTELTCKTIKYA 212 (887)
Q Consensus 181 -~~a~~Lf~~~a-f~~~~~~~~~~~l~~~i~~~~ 212 (887)
++..+.++..- |.++ +.+..+.+...++
T Consensus 675 ~~~~~~vl~~~n~fsd~----~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNIFSDD----EVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccCCCcc----hhHHHHHHHhccc
Confidence 77777776533 4332 2333444444444
No 230
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.061 Score=58.09 Aligned_cols=173 Identities=11% Similarity=0.130 Sum_probs=97.6
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHH------hc
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTL------LN 101 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l------~~ 101 (887)
.+++...+..+. -.....++|+.|+||+++|+++...+--.-... ....+.-.-.+.+...- ..
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~---------~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQG---------DQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC---------CCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 355666665432 235788999999999999999988542110000 00000001111111000 00
Q ss_pred CCCCCCCcccchHHHH---Hhh-----CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhc-CC
Q 045202 102 DGNVKSFPNIGLNFQS---KRL-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR-QLLTNC-GV 169 (887)
Q Consensus 102 ~~~~~~~~~~~~~~~~---~~l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~ 169 (887)
...+ ....++.++ +.+ .+++=++|+|+++.. .....|...+....+++.+|++|.+. .+.... ..
T Consensus 81 p~~~---~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 81 PIDN---KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred cccC---CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 0000 011223332 222 245557889999865 34667777776666788888887765 444443 33
Q ss_pred CceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 170 DEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 170 ~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
...+.+.+++.++..+.+.... .. + ...+...+..++|.|+...
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~--~~---~--~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQS--SA---E--ISEILTALRINYGRPLLAL 201 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHh--cc---C--hHHHHHHHHHcCCCHHHHH
Confidence 5789999999999998887754 11 1 1235567788999996443
No 231
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.61 E-value=0.0018 Score=59.46 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+|+|.|++|+||||+|+.+.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998875
No 232
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0036 Score=73.73 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=85.3
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-cc-----eEEEccccHHHHhcCCHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-SA-----GSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~-----~~~~~~~~~~~s~~~~~~~l~ 92 (887)
+.++|||.++.++++.|..-..+..++ +|.+|||||++|.-++.++... -+ ..++--++.. +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvL--iGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~---------L- 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVL--VGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS---------L- 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeE--ecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH---------H-
Confidence 569999999999999998766555444 8999999999999888875432 11 1122211111 1
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhh-CCceEEEEEecCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCC
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRL-TRKKVLIVFYDVNHP-----------RQIEFLVGRLDLFASGSRIIITTRD 160 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~ 160 (887)
.....-..+.++....+.+.+ +.+++.+++|.+... +.-.-|.+.+. .|.--.|-.||-+
T Consensus 238 -------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT~~ 309 (786)
T COG0542 238 -------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATTLD 309 (786)
T ss_pred -------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEeccHH
Confidence 111111122222233333333 345899999998532 11222222222 2222345556654
Q ss_pred hhh---hhh---cCCCceEecCCCChHHHHHHHHH
Q 045202 161 RQL---LTN---CGVDEKYQMKELVHADALKLFSR 189 (887)
Q Consensus 161 ~~v---~~~---~~~~~~~~v~~L~~~~a~~Lf~~ 189 (887)
+.- .+. ...-+.+.|...+.+++.+.+.-
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 332 111 12357899999999999998864
No 233
>PHA00729 NTP-binding motif containing protein
Probab=96.58 E-value=0.011 Score=59.86 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+...|.|+|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445789999999999999999998764
No 234
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.58 E-value=0.003 Score=60.32 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=67.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHh----cC------CCCC---CCc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLL----ND------GNVK---SFP 109 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~----~~------~~~~---~~~ 109 (887)
.+|-|++-.|.||||+|-.+.-+...+--.+.++.=.+. ....+-....+.+ ..+. +. .+.. ...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg-~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG-GWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC-CCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 468889999999999999988776555444444321111 1122333333332 1110 00 0000 001
Q ss_pred ccchHHHHHhhCCce-EEEEEecCCCH-----HHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecCC
Q 045202 110 NIGLNFQSKRLTRKK-VLIVFYDVNHP-----RQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMKE 177 (887)
Q Consensus 110 ~~~~~~~~~~l~~kk-~LiVlDdv~~~-----~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~~ 177 (887)
.++.+..++.+.... =|+|||++-.. -..+.+...+.....+.-||+|.|+..-.-.--+|.+.+++.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 122333445554444 49999998432 112223222223345778999999865432222455555554
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.58 E-value=0.012 Score=56.91 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=27.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
++.|+|.+|+||||+|..+......+-..++|+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 368999999999999999988776655556666
No 236
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.58 E-value=0.011 Score=68.95 Aligned_cols=49 Identities=24% Similarity=0.402 Sum_probs=38.6
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..++++|.+..++.+...+... ...-|.|+|.+|+||||+|+++++..+
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457999999999988776532 234578999999999999999987543
No 237
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.00096 Score=67.35 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=39.1
Q ss_pred cCCCcccEEecccC--CCCC-ccccccCCCCCcEEEcCCCCCcccc--hhhhcCCCccEeeccccc
Q 045202 577 DGLQNLLDLSLNDC--CIME-LPESLGLLSSVRELHLNGNNFERIP--ESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n--~l~~-lp~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~ 637 (887)
..+++|+.|.++.| ++.. ++.....+|+|++|++++|++..+. ..+..+.+|..|++.+|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34566677777766 3332 4444445588888888888766321 245667778888888886
No 238
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.046 Score=59.55 Aligned_cols=177 Identities=13% Similarity=0.086 Sum_probs=97.7
Q ss_pred cHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--cc-eEEEc-cccHHH--HhcCCHHHHHHHHHHHHh
Q 045202 27 PMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--SA-GSYFA-NNVREA--EETGRLGDLRQQLLSTLL 100 (887)
Q Consensus 27 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--f~-~~~~~-~~~~~~--s~~~~~~~l~~~il~~l~ 100 (887)
.-+++...+..+. -...+.+.|+.|+||+|+|.++...+--. -+ ..|=. ...+.. ....++..+ .
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 10 DYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 3456666665432 24578899999999999999988754211 10 00000 000000 000010000 0
Q ss_pred cCCC-CCCCcccchHHHHHhh-----CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hhhhc-CCC
Q 045202 101 NDGN-VKSFPNIGLNFQSKRL-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQ-LLTNC-GVD 170 (887)
Q Consensus 101 ~~~~-~~~~~~~~~~~~~~~l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~-~~~ 170 (887)
.+.. .....+ .++.+.+.+ .+++=++|+|+++.. ..-..|...+....+++.+|++|.+.+ +.... ...
T Consensus 81 p~~~~~~I~id-qiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVD-AVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHH-HHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 0000 001111 122222222 245668899999764 346667777766667888887777644 55443 334
Q ss_pred ceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 171 EKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 171 ~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
+.+.+..++.+++.+.+.... + .+ .+.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~-----~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV-T-----MS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc-C-----CC-HHHHHHHHHHcCCCHHHHH
Confidence 688999999999988876532 1 11 2346788899999996443
No 239
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.54 E-value=0.0024 Score=60.17 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=34.0
Q ss_pred ccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 22 VGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 22 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777788888777765334446689999999999999999988533
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.54 E-value=0.02 Score=56.47 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..+|.+.|+.|+||||+|+++++++..++...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 45899999999999999999999988888777777
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.54 E-value=0.0065 Score=63.46 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=29.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 445689999999999999999999988544555666
No 242
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.0014 Score=66.23 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=29.0
Q ss_pred CCcccEEecccCCCCCcc--ccccCCCCCcEEEcCCCCCcccc----hhhhcCCCccEeeccccc
Q 045202 579 LQNLLDLSLNDCCIMELP--ESLGLLSSVRELHLNGNNFERIP----ESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l~~lp----~~l~~l~~L~~L~L~~c~ 637 (887)
+++|++|++++|.+..+. ..+..+.+|..|++.+|..+.+- ..+.-+++|++|+-....
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 344444444444444310 12233445555666555444332 234556777777766554
No 243
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.042 Score=54.81 Aligned_cols=148 Identities=19% Similarity=0.315 Sum_probs=88.8
Q ss_pred Cccc-ccccHHHHHHhHhcCC-----------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCC
Q 045202 20 DLVG-VELPMKEIESLLRSGS-----------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGR 87 (887)
Q Consensus 20 ~~vG-r~~~~~~l~~~L~~~~-----------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~ 87 (887)
++|| .|..+++|.+.+.-.- .+..-+.++|++|.|||-||++|++.-. +-|+ .+|.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-----c~fi----rvsg--- 214 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-----CTFI----RVSG--- 214 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-----eEEE----Eech---
Confidence 4554 6888888888775421 3456788999999999999999987432 2233 1221
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh----CCceEEEEEecCCCH--------------HH--HHHHhcCCCC
Q 045202 88 LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL----TRKKVLIVFYDVNHP--------------RQ--IEFLVGRLDL 147 (887)
Q Consensus 88 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l----~~kk~LiVlDdv~~~--------------~~--~~~l~~~~~~ 147 (887)
.++.++.+. ++.+.+++.. .+.+-.|+.|.+++. .| .-.+...++.
T Consensus 215 -selvqk~ig-------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 215 -SELVQKYIG-------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred -HHHHHHHhh-------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 133333221 1222333222 346678888888632 11 2233444444
Q ss_pred C--CCCcEEEEEeCChhhhh-----hcCCCceEecCCCChHHHHHHHHHhhcC
Q 045202 148 F--ASGSRIIITTRDRQLLT-----NCGVDEKYQMKELVHADALKLFSRHAFG 193 (887)
Q Consensus 148 ~--~~gsrIiiTTR~~~v~~-----~~~~~~~~~v~~L~~~~a~~Lf~~~af~ 193 (887)
| ...-+||.+|..-+++. .-..++.++.++-+++.-.+++.-|.-+
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrk 333 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 333 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhh
Confidence 4 34567787776444433 2245778899999988888888777643
No 244
>PRK04296 thymidine kinase; Provisional
Probab=96.48 E-value=0.0053 Score=61.33 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=60.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCC--CCCcccchHHHHHhh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNV--KSFPNIGLNFQSKRL 120 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~--~~~~~~~~~~~~~~l 120 (887)
.++.|+|..|.||||+|.....+...+...++.+. . ......+ ...+++++...... .....+....+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYG----EGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccccc----CCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 46788999999999999998887755544444331 0 0011111 11222232211000 0112222333333 2
Q ss_pred CCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 121 TRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 121 ~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
.++.-+||+|.+.. .+++..+...+ ...|..||+|.++...
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 33456899999965 34444444332 2468889999998543
No 245
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.48 E-value=0.012 Score=72.49 Aligned_cols=133 Identities=16% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCcccccccHHHHHHhHhcC-------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHH
Q 045202 18 TNDLVGVELPMKEIESLLRSG-------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGD 90 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~ 90 (887)
.+.++|-+..++.|...+... ......+.++|+.|+|||++|+++.+.+...-...+-+. ..+......+..
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH
Confidence 357899999999998877532 112345678999999999999999887643222222221 111111111111
Q ss_pred HHHHHHHHHhcCCCCCCCcccchHHHHHhhCCce-EEEEEecCCC--HHHHHHHhcCCCCC-----------CCCcEEEE
Q 045202 91 LRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKK-VLIVFYDVNH--PRQIEFLVGRLDLF-----------ASGSRIII 156 (887)
Q Consensus 91 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk-~LiVlDdv~~--~~~~~~l~~~~~~~-----------~~gsrIii 156 (887)
+.+...+-...++ ...+.+.++.++ -+|++|+++. .+.++.+...+... ...+.||+
T Consensus 587 --------l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 587 --------LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred --------hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 2221111111111 123445555554 5899999974 34466655554321 13455666
Q ss_pred EeCC
Q 045202 157 TTRD 160 (887)
Q Consensus 157 TTR~ 160 (887)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 7664
No 246
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.083 Score=56.87 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=63.7
Q ss_pred ceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCC
Q 045202 123 KKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDR-QLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPY 198 (887)
Q Consensus 123 kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~ 198 (887)
.+=++|+|+++.. .....+...+....+++.+|++|.+. .+.... ...+.+.+..++.+++.+.+.... .
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-- 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-- 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C--
Confidence 4457888999754 44677777776666778888777764 444443 345789999999999999886532 1
Q ss_pred ccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 199 ESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 199 ~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
+ .+..++..++|.|+....+.
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHHh
Confidence 1 23567889999998775544
No 247
>PRK07667 uridine kinase; Provisional
Probab=96.46 E-value=0.0055 Score=61.43 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=34.0
Q ss_pred cHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 27 PMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 27 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+++++...+........+|||.|.+|.||||+|+.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 2 STNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356677777665566689999999999999999999987654
No 248
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.44 E-value=0.017 Score=55.95 Aligned_cols=137 Identities=17% Similarity=0.199 Sum_probs=71.6
Q ss_pred cccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--------------------cceEEEccccHHH
Q 045202 23 GVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--------------------SAGSYFANNVREA 82 (887)
Q Consensus 23 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------f~~~~~~~~~~~~ 82 (887)
|-+...+.|.+.+..+. -...+.++|..|+||+|+|.++.+.+-.. ..-..|+... ..
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 44555677777776442 24578999999999999999988854211 1111222100 00
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCC
Q 045202 83 EETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRD 160 (887)
Q Consensus 83 s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~ 160 (887)
.....+.++. ++.+.+... ...+++=++|+|+++. .+....|...+.....++++|++|++
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLS----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred cchhhHHHHH-HHHHHHHHH----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 0001111111 222111110 1123456789999985 44567777766666689999999987
Q ss_pred hhh-hhh-cCCCceEecCCC
Q 045202 161 RQL-LTN-CGVDEKYQMKEL 178 (887)
Q Consensus 161 ~~v-~~~-~~~~~~~~v~~L 178 (887)
..- ... ......+.++++
T Consensus 142 ~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 142 PSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp GGGS-HHHHTTSEEEEE---
T ss_pred hHHChHHHHhhceEEecCCC
Confidence 663 322 233456666655
No 249
>PRK06696 uridine kinase; Validated
Probab=96.39 E-value=0.005 Score=63.32 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=36.3
Q ss_pred ccccHHHHHHhHhc-CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 24 VELPMKEIESLLRS-GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 24 r~~~~~~l~~~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
|.+.+++|.+.+.. ......+|+|.|.+|.||||+|+.+.+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55667777776653 34567899999999999999999999877543
No 250
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.38 E-value=0.0073 Score=65.51 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=60.0
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-ceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-AGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKS 107 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~ 107 (887)
.++++.+..-..+ ..++|+|.+|+|||||++.+.+.+..+. +..+++..+. .....+.++.+.+...+........
T Consensus 121 ~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3455555432223 3469999999999999999999876654 3333332221 2234567888887775544321111
Q ss_pred Ccc--c---chHHHHHhh--CCceEEEEEecCCCH
Q 045202 108 FPN--I---GLNFQSKRL--TRKKVLIVFYDVNHP 135 (887)
Q Consensus 108 ~~~--~---~~~~~~~~l--~~kk~LiVlDdv~~~ 135 (887)
... . ....+-+++ .+++++||+|++...
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 100 1 111112222 689999999998543
No 251
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.023 Score=58.98 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|+|.++|++|.|||+|.++++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 5899999999999999999999964
No 252
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.35 E-value=0.0034 Score=58.22 Aligned_cols=97 Identities=16% Similarity=0.266 Sum_probs=29.4
Q ss_pred ccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhh
Q 045202 599 LGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDL 677 (887)
Q Consensus 599 ~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l 677 (887)
+..+++|+.+.+.++ +..++. .+.++++|+.+.+.++ +..++...+.+|++|+.+.+..+ +..+....|...
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-----~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~ 103 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-----LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC 103 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-----T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT-
T ss_pred ccccccccccccccc-ccccceeeeeccccccccccccc-----ccccccccccccccccccccCcc-ccEEchhhhcCC
Confidence 334444444444442 333332 2333434444444321 22222333334444444444333 333333333333
Q ss_pred cccCcccCCCCCCCcchhHHHHHhHHH
Q 045202 678 YLSDNFKLDPNDLGGIFKGALQKIQLL 704 (887)
Q Consensus 678 ~~l~~l~L~~N~l~~i~~~~~~~l~~L 704 (887)
.++.+.+.. .+..|...+|.++++|
T Consensus 104 -~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 104 -NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -T--EEE-TT-B-SS----GGG-----
T ss_pred -CceEEEECC-CccEECCccccccccC
Confidence 333344332 3444444455544433
No 253
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.34 E-value=0.0025 Score=60.18 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHHh
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
|.++|.+|+|||++|+.+++.+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999999873
No 254
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.03 Score=61.93 Aligned_cols=148 Identities=18% Similarity=0.186 Sum_probs=82.0
Q ss_pred CCCcccccccH---HHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCC
Q 045202 18 TNDLVGVELPM---KEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGR 87 (887)
Q Consensus 18 ~~~~vGr~~~~---~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~ 87 (887)
.+++-|.|+.. ++|+++|.+.. .=.+-|.++|++|.|||-|||+|.-+..-.| |... ..+++
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~s----GSEFd 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYAS----GSEFD 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eecc----ccchh
Confidence 45677877655 55667777542 2256788999999999999999987543222 2210 00000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchHHHHH----hhCCceEEEEEecCCCH-------------HHHHHHhcCCCCCCC
Q 045202 88 LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSK----RLTRKKVLIVFYDVNHP-------------RQIEFLVGRLDLFAS 150 (887)
Q Consensus 88 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~----~l~~kk~LiVlDdv~~~-------------~~~~~l~~~~~~~~~ 150 (887)
+ .-...+...+++ .-...++.|++|.+|.. ..+..++...+-|.+
T Consensus 375 --E----------------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 375 --E----------------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred --h----------------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 0 001112233332 23456799999998632 125566666666655
Q ss_pred CcEEE--EEeCChhhhh-hc---C-CCceEecCCCChHHHHHHHHHhh
Q 045202 151 GSRII--ITTRDRQLLT-NC---G-VDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 151 gsrIi--iTTR~~~v~~-~~---~-~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
..-|| -.|--++.+. .. | -+..+.|+.-+..--.++|..|.
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 43333 3444333332 22 2 24566666666665666666665
No 255
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.038 Score=64.37 Aligned_cols=152 Identities=16% Similarity=0.126 Sum_probs=89.4
Q ss_pred CCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCC
Q 045202 19 NDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGR 87 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~ 87 (887)
.++.|.+...+.+.+.+.. +-...+.+-++|++|.|||.||+++.+....+|-....-. -.+...+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~---l~sk~vG 318 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE---LLSKWVG 318 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH---Hhccccc
Confidence 4566666666665554432 1134568999999999999999999997777765443221 1111111
Q ss_pred -HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH-------------HHHHHhcCCCCCCCCc-
Q 045202 88 -LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR-------------QIEFLVGRLDLFASGS- 152 (887)
Q Consensus 88 -~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~-------------~~~~l~~~~~~~~~gs- 152 (887)
.....+ .......+..+..|++|+++... ....+....+.....+
T Consensus 319 esek~ir--------------------~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 319 ESEKNIR--------------------ELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred hHHHHHH--------------------HHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 111111 22233335678999999996332 2333333333223333
Q ss_pred -EEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcC
Q 045202 153 -RIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFG 193 (887)
Q Consensus 153 -rIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~ 193 (887)
.||-||-.+...... .-+..+.++.-+.++..+.|..+.-.
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 344455444433321 34678999999999999999998843
No 256
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00016 Score=72.77 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCC
Q 045202 508 KSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRG 567 (887)
Q Consensus 508 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~ 567 (887)
.+.+.|+..||.+... .....|+.|++|.|+-|+|+.+. .+..|++|+.|+|..|.+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I 75 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCI 75 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhccc
Confidence 3444444444443221 22344555555555555554442 233344444444444433
No 257
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.27 E-value=0.0044 Score=57.87 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=29.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc-cceE-EEccccH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH-SAGS-YFANNVR 80 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~-~~~~~~~ 80 (887)
--|+|.||+|+||||+++.+.+.++.. |... +|..-+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 358999999999999999999987766 6533 4444444
No 258
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.078 Score=53.30 Aligned_cols=169 Identities=17% Similarity=0.188 Sum_probs=99.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAE 83 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s 83 (887)
.....++=|.|..++++.+.+--. -...+-+..||++|.|||-+|++...+...-|-. ..
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK---------LA 237 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK---------LA 237 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH---------hc
Confidence 334467888999999988876421 1234568899999999999999988765544321 11
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh----CCceEEEEEecCCCH--------------HH--HHHHhc
Q 045202 84 ETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL----TRKKVLIVFYDVNHP--------------RQ--IEFLVG 143 (887)
Q Consensus 84 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l----~~kk~LiVlDdv~~~--------------~~--~~~l~~ 143 (887)
.+ ++.+-. ...+...+++.. ...+.+|++|.++-. .| +-.+..
T Consensus 238 gP----QLVQMf-------------IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLN 300 (424)
T KOG0652|consen 238 GP----QLVQMF-------------IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 300 (424)
T ss_pred ch----HHHhhh-------------hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHH
Confidence 11 011100 112233333332 345688999987521 11 223444
Q ss_pred CCCCCCC--CcEEEEEeCChhh-----hhhcCCCceEecCCCChHHHHHHHHHhhcCCC-CCCccHHHHHHHHH
Q 045202 144 RLDLFAS--GSRIIITTRDRQL-----LTNCGVDEKYQMKELVHADALKLFSRHAFGGD-HPYESHTELTCKTI 209 (887)
Q Consensus 144 ~~~~~~~--gsrIiiTTR~~~v-----~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~ 209 (887)
.++.|.+ .-+||..|..-++ .+.-.-++.++.+--+++.-.+++.-|+-+.. .+.-+|+++++.--
T Consensus 301 QLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTd 374 (424)
T KOG0652|consen 301 QLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTD 374 (424)
T ss_pred hhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhccc
Confidence 4554544 3466666654333 33334567888887777777777777775543 45678888877543
No 259
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.23 E-value=0.0091 Score=56.68 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=58.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
.+++|.|..|.|||||++.+..... ...+.+++...+.+.--+. ...-....-.+-+.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc------------------CCHHHHHHHHHHHHHhc
Confidence 5799999999999999999876432 2345555532100000000 00001112223455556
Q ss_pred ceEEEEEecCC---CHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEec
Q 045202 123 KKVLIVFYDVN---HPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQM 175 (887)
Q Consensus 123 kk~LiVlDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v 175 (887)
++-++++|+.- +.+..+.+...+... +..||++|.+....... .++++.+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 67789999873 222222222222111 24688888887766543 3455544
No 260
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.22 E-value=0.00065 Score=78.94 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=18.6
Q ss_pred CCCCcEEecccCCCCc--cCCcccCCCCCCcEEEeeCCCCC
Q 045202 483 LSKLLHLDLVDCKTLK--SLPSGLGKLKSLGILSIDGCSNL 521 (887)
Q Consensus 483 l~~L~~L~L~~~~~~~--~lp~~l~~L~~L~~L~L~~~~~~ 521 (887)
+++|+.|.+.+|..+. .+-.....+++|++|++++|...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 4556666655554211 11112234555666666665543
No 261
>PRK04132 replication factor C small subunit; Provisional
Probab=96.21 E-value=0.071 Score=64.47 Aligned_cols=150 Identities=13% Similarity=0.047 Sum_probs=91.4
Q ss_pred CCCcchHHHHHHHHHHHhc-ccce-EEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEE
Q 045202 50 IGGIGKTTIAGAIFNKISR-HSAG-SYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLI 127 (887)
Q Consensus 50 ~gGiGKTtLA~~v~~~~~~-~f~~-~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~Li 127 (887)
+.++||||+|.++.+++-. .+.. ..-+ ..|...++..+.+ ++.+....... -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lEl----NASd~rgid~IR~-iIk~~a~~~~~--------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLEL----NASDERGINVIRE-KVKEFARTKPI--------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEE----eCCCcccHHHHHH-HHHHHHhcCCc--------------CCCCCEEE
Confidence 7789999999999998632 2222 2333 2233334444443 33332211100 01245799
Q ss_pred EEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-hhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHH
Q 045202 128 VFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQL-LTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTE 203 (887)
Q Consensus 128 VlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v-~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~ 203 (887)
|+|+++.. ++...|...+.......++|++|.+..- .... .....+++++++.++-.+.+.+-+-...-. --.+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e 712 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEE 712 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHH
Confidence 99999865 4566777666655567788777665443 2222 235789999999998888777655322211 1245
Q ss_pred HHHHHHHhhCCChHHHH
Q 045202 204 LTCKTIKYARGVPLALK 220 (887)
Q Consensus 204 l~~~i~~~~~GlPLal~ 220 (887)
....+++.++|.+-.+.
T Consensus 713 ~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 713 GLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 77899999999885543
No 262
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.025 Score=61.61 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=27.5
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..++|+++|.+|+||||++..+...+..+-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 457999999999999999999987665443334444
No 263
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.097 Score=56.95 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=61.2
Q ss_pred CceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCC-hhhhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCC
Q 045202 122 RKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRD-RQLLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHP 197 (887)
Q Consensus 122 ~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~ 197 (887)
+++=++|+|+++.. .....|...+....+++.+|++|.+ ..+.... ...+.+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 34457888999754 4577777777766778877776665 4444443 335789999999999998887642 11
Q ss_pred CccHHHHHHHHHHhhCCChHHHHHH
Q 045202 198 YESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 198 ~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
. ...++..++|.|+....+
T Consensus 207 --~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 --D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999754433
No 264
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.14 Score=51.26 Aligned_cols=147 Identities=20% Similarity=0.252 Sum_probs=83.2
Q ss_pred CCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCC
Q 045202 19 NDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGR 87 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~ 87 (887)
.++=|.|-..+++.+...- +-+..|-|.++|++|.|||-||++|.+.....|-.+.--
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgs----------- 223 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGS----------- 223 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccH-----------
Confidence 4567788888888876643 124567889999999999999999999766555322111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchHHHHHh----hCCceEEEEEecCCCHH--------------H--HHHHhcCCCC
Q 045202 88 LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR----LTRKKVLIVFYDVNHPR--------------Q--IEFLVGRLDL 147 (887)
Q Consensus 88 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~----l~~kk~LiVlDdv~~~~--------------~--~~~l~~~~~~ 147 (887)
+..++- ++ ++.+.+++. -...+-+|++|.|+... | +-.+....+.
T Consensus 224 --efvqky----lg---------egprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdg 288 (408)
T KOG0727|consen 224 --EFVQKY----LG---------EGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDG 288 (408)
T ss_pred --HHHHHH----hc---------cCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccC
Confidence 111111 11 122233322 23456788888886331 1 2223333333
Q ss_pred CC--CCcEEEEEeCChh-----hhhhcCCCceEecCCCChHHHHHHHHHhh
Q 045202 148 FA--SGSRIIITTRDRQ-----LLTNCGVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 148 ~~--~gsrIiiTTR~~~-----v~~~~~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
|. ..-+||..|...+ ++..-.-+..++.+.-+..+-.-.|....
T Consensus 289 fdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 289 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred cCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 33 3457777665332 22222345677777555666666666554
No 265
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.15 E-value=0.02 Score=69.00 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=39.4
Q ss_pred CCcccccccHHHHHHhHhcC-------CCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 19 NDLVGVELPMKEIESLLRSG-------STNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+.++|-+..++.|.+.+... ......+.++|+.|+|||++|+++.....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999998887732 12245789999999999999999988764
No 266
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.10 E-value=0.011 Score=61.05 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=35.8
Q ss_pred HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 30 EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 30 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
.|-++|..+-..-.++.|+|.+|+||||+|..+.......-..++|++
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555433344578999999999999999999887655666778884
No 267
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.10 E-value=0.0061 Score=69.13 Aligned_cols=50 Identities=24% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCcccccccHHHHHHhHh----cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 19 NDLVGVELPMKEIESLLR----SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
++++|+++.+++|.+.|. .-...-+++.++|++|+||||||+.+.+-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 368999999999999883 22345679999999999999999999885443
No 268
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.07 E-value=0.017 Score=59.24 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=78.6
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccc--cHHHHhcCCHHHHHHHHHHHHhcCCCCC-------CCcccc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANN--VREAEETGRLGDLRQQLLSTLLNDGNVK-------SFPNIG 112 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~--~~~~s~~~~~~~l~~~il~~l~~~~~~~-------~~~~~~ 112 (887)
-.++||+|.+|.||||+|+.+..-...-. +.+++.. +...+ .....+...+++..++...... ..-...
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 35799999999999999999977433222 3333321 11111 1222334445555544222111 111222
Q ss_pred hHHHHHhhCCceEEEEEecCCCH------HHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCc---eEecCCCChHHH
Q 045202 113 LNFQSKRLTRKKVLIVFYDVNHP------RQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDE---KYQMKELVHADA 183 (887)
Q Consensus 113 ~~~~~~~l~~kk~LiVlDdv~~~------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~---~~~v~~L~~~~a 183 (887)
.-.+.+.|.-+.-+||.|..-+. .|.-.+...+. ...|-..+..|-|-.+...+ ++. .|.-+-.....+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i-sdri~VMy~G~iVE~g~~ 194 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIGPT 194 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh-cccEEEEecCceeEecCH
Confidence 34566778889999999986432 33333333332 23566678888888887766 332 233333444455
Q ss_pred HHHHH
Q 045202 184 LKLFS 188 (887)
Q Consensus 184 ~~Lf~ 188 (887)
.++|.
T Consensus 195 ~~~~~ 199 (268)
T COG4608 195 EEVFS 199 (268)
T ss_pred HHHhh
Confidence 66664
No 269
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.05 E-value=0.018 Score=59.07 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=35.0
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..|..+|..+-..-+++.|.|.+|+||||+|..+......+-..++|+
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 345555543334457899999999999999999988765554556677
No 270
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.038 Score=63.56 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=98.3
Q ss_pred CCCCCcccccccHHHHHHh---HhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccc---eEEEccccHHH
Q 045202 16 SETNDLVGVELPMKEIESL---LRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA---GSYFANNVREA 82 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~---L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~ 82 (887)
....+.-|.|+..+++.+. |.+.. .=.+-|..+|++|.|||.||+++..+..-.|- +.-|+ +.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV----em 222 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV----EM 222 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh----hh
Confidence 3456788988888776654 44322 12567899999999999999999986554432 11222 11
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH------------H----HHHHHhcCCC
Q 045202 83 EETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP------------R----QIEFLVGRLD 146 (887)
Q Consensus 83 s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~------------~----~~~~l~~~~~ 146 (887)
--.-+.. +..+...+..+..++.|++|.+|.. + .+..+....+
T Consensus 223 fVGvGAs---------------------RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD 281 (596)
T COG0465 223 FVGVGAS---------------------RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 281 (596)
T ss_pred hcCCCcH---------------------HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc
Confidence 1111111 1122233444556789999987521 1 2555666666
Q ss_pred CCCC--CcEEEEEeCChhhhh-----hcCCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCChHH
Q 045202 147 LFAS--GSRIIITTRDRQLLT-----NCGVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 147 ~~~~--gsrIiiTTR~~~v~~-----~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPLa 218 (887)
-++. |-.||..|--++|.. .-+-++.+.|+..+...-.+.++-|+-...- +.-++.. |++.+-|.-.|
T Consensus 282 GF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfsGA 357 (596)
T COG0465 282 GFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFSGA 357 (596)
T ss_pred cCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcccc
Confidence 6653 333333444344432 2234677888877778888888877733221 2223332 66666665544
No 271
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.00 E-value=0.021 Score=56.60 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=65.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcccc--HHHHh---cCCHHHHHHHHHHHHhcCCCCC---CCc---cc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNV--REAEE---TGRLGDLRQQLLSTLLNDGNVK---SFP---NI 111 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~s~---~~~~~~l~~~il~~l~~~~~~~---~~~---~~ 111 (887)
.+++|.|..|.|||||++.+..... ...+.+++... ..... ...+ ....++++.+.-..... ... ..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i-~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKI-AYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHH-hHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 4799999999999999999987432 34455554321 00000 0011 11112333332111100 111 11
Q ss_pred chHHHHHhhCCceEEEEEecCC---CHHHHHHHhcCCCCC-CC-CcEEEEEeCChhhhhhcCCCceEec
Q 045202 112 GLNFQSKRLTRKKVLIVFYDVN---HPRQIEFLVGRLDLF-AS-GSRIIITTRDRQLLTNCGVDEKYQM 175 (887)
Q Consensus 112 ~~~~~~~~l~~kk~LiVlDdv~---~~~~~~~l~~~~~~~-~~-gsrIiiTTR~~~v~~~~~~~~~~~v 175 (887)
..-.+-+.+-..+-++++|+.- +.+..+.+...+... .. |..||++|.+....... +++++.+
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 1222345566777899999873 222222222222111 22 67788999887765443 4455544
No 272
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.98 E-value=0.02 Score=52.98 Aligned_cols=73 Identities=16% Similarity=0.316 Sum_probs=24.2
Q ss_pred ccCCCcccEEecccCCCCCcc-ccccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeeccccccccccCCCcccccccC
Q 045202 576 VDGLQNLLDLSLNDCCIMELP-ESLGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGC 653 (887)
Q Consensus 576 ~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~ 653 (887)
+.++++|+.+.+.+ .+..++ ..+..+++|+.+.+..+ +..++. .+.++ +|+.+.+..+ +..++...+.+|
T Consensus 54 F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-----~~~i~~~~F~~~ 125 (129)
T PF13306_consen 54 FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-----ITKIEENAFKNC 125 (129)
T ss_dssp TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB------SS----GGG--
T ss_pred eecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC-----ccEECCcccccc
Confidence 33444445555433 333322 23344556666666543 444443 33444 5666555432 334444555555
Q ss_pred ccc
Q 045202 654 ASL 656 (887)
Q Consensus 654 ~~L 656 (887)
++|
T Consensus 126 ~~l 128 (129)
T PF13306_consen 126 TKL 128 (129)
T ss_dssp ---
T ss_pred ccC
Confidence 555
No 273
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.06 Score=60.69 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=89.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHH-HHHhh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNF-QSKRL 120 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~-~~~~l 120 (887)
..-|.+||++|.|||-||++|+|+.+-.|-.+-=- ++ +..-.++ .+.+.+. ..+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGP-------------EL----lNkYVGE------SErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGP-------------EL----LNKYVGE------SERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCH-------------HH----HHHHhhh------HHHHHHHHHHHhh
Confidence 45688999999999999999999988777432110 11 1111111 1122222 23334
Q ss_pred CCceEEEEEecCCCH-------------HHHHHHhcCCCCC--CCCcEEEEEeCChhhhhh-----cCCCceEecCCCCh
Q 045202 121 TRKKVLIVFYDVNHP-------------RQIEFLVGRLDLF--ASGSRIIITTRDRQLLTN-----CGVDEKYQMKELVH 180 (887)
Q Consensus 121 ~~kk~LiVlDdv~~~-------------~~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~ 180 (887)
...++.|++|.+|.. .....|+..++-. ..|--||-.|--+++... -.-+.+.-|..-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 567899999999632 1234454444422 345566666655554322 13467888999999
Q ss_pred HHHHHHHHHhhcCCCCC---CccHHHHHHHHHHhhCCCh
Q 045202 181 ADALKLFSRHAFGGDHP---YESHTELTCKTIKYARGVP 216 (887)
Q Consensus 181 ~~a~~Lf~~~af~~~~~---~~~~~~l~~~i~~~~~GlP 216 (887)
+|-.++++...-....| .-++.+++.. .+|.|.-
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 99999998888432222 3456666553 3455544
No 274
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.94 E-value=0.0098 Score=56.55 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=29.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.+|.|.|.+|.||||||+++..++...-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 5899999999999999999999988777666666
No 275
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.042 Score=56.93 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=70.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC-CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG-RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR 119 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~-~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~ 119 (887)
-...++|||.+|.|||-+|++|+.++.-.|-.. ....-++... ...++.++.+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v---~ss~lv~kyiGEsaRlIRemf~yA-------------------- 221 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKV---VSSALVDKYIGESARLIRDMFRYA-------------------- 221 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEe---eHhhhhhhhcccHHHHHHHHHHHH--------------------
Confidence 356899999999999999999999887776322 1111112211 1123333332221
Q ss_pred hCCceEEEEEecCCCH-----------HH-----HHHHhcCCCCC--CCCcEEEEEeCChhhhhhc-----CCCceEecC
Q 045202 120 LTRKKVLIVFYDVNHP-----------RQ-----IEFLVGRLDLF--ASGSRIIITTRDRQLLTNC-----GVDEKYQMK 176 (887)
Q Consensus 120 l~~kk~LiVlDdv~~~-----------~~-----~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~v~ 176 (887)
-...++.|.+||++-. ++ +-.|+...+.+ -...++|+||-+.+.+... .-++.|+.+
T Consensus 222 ~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iP 301 (388)
T KOG0651|consen 222 REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIP 301 (388)
T ss_pred hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccC
Confidence 1234589999998621 11 22233333222 2456899999887765432 235667777
Q ss_pred CCChHHHHHHHHHh
Q 045202 177 ELVHADALKLFSRH 190 (887)
Q Consensus 177 ~L~~~~a~~Lf~~~ 190 (887)
-.+...-.+.++-+
T Consensus 302 lpne~~r~~I~Kih 315 (388)
T KOG0651|consen 302 LPNEQARLGILKIH 315 (388)
T ss_pred CcchhhceeeEeec
Confidence 44443334444433
No 276
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.88 E-value=0.034 Score=65.32 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=40.7
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..+.++|....+.++.+.+..-...-..|.|+|..|+|||++|+++++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999888776543334467899999999999999999853
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=95.82 E-value=0.035 Score=60.16 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
...+|+++|+.|+||||.+..+...+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999888888766544
No 278
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.80 E-value=0.026 Score=61.50 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=35.7
Q ss_pred cccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 21 LVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
+||....+.++.+.+..-...-.-|.|+|..|+||+++|++++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 578888888877776654333456899999999999999999874
No 279
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.78 E-value=0.0078 Score=55.67 Aligned_cols=22 Identities=50% Similarity=0.771 Sum_probs=20.4
Q ss_pred EEEEcCCCcchHHHHHHHHHHH
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~ 66 (887)
|+|.|..|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998875
No 280
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.78 E-value=0.035 Score=55.74 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=54.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh--
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL-- 120 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l-- 120 (887)
+++.|.|.+|+||||+++.+...+..+-..++++.-..... ..+.+. .... .......+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa-----~~L~~~----~~~~------a~Ti~~~l~~~~~~ 83 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAA-----KELREK----TGIE------AQTIHSFLYRIPNG 83 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHH-----HHHHHH----HTS-------EEEHHHHTTEECCE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHH-----HHHHHh----hCcc------hhhHHHHHhcCCcc
Confidence 67888999999999999998886655533344442211111 122222 1100 000000000000
Q ss_pred -------CCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChhhh
Q 045202 121 -------TRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDRQLL 164 (887)
Q Consensus 121 -------~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 164 (887)
..++-+||+|++.. ..++..+....+. .|+|+|+.-=..++.
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQLP 134 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTSHH
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcchhc
Confidence 12334999999964 4457777665543 588888877655543
No 281
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.099 Score=56.77 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=49.2
Q ss_pred ceEEEEEecCCCHH--HHHHHhcCCCCCCCCcEEEEEeCChh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCC
Q 045202 123 KKVLIVFYDVNHPR--QIEFLVGRLDLFASGSRIIITTRDRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPY 198 (887)
Q Consensus 123 kk~LiVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~ 198 (887)
.|+. |+|+++..+ .-..+...+.....+..+|++|.+.+ +.... .....+.+..++.+++.+.+.... .+
T Consensus 114 ~kV~-iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~- 187 (325)
T PRK08699 114 LRVI-LIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VA- 187 (325)
T ss_pred ceEE-EEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CC-
Confidence 4444 558886543 33334333332334566777777654 43332 234689999999999988886532 11
Q ss_pred ccHHHHHHHHHHhhCCChHHH
Q 045202 199 ESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 199 ~~~~~l~~~i~~~~~GlPLal 219 (887)
.. . ..+..++|-|+..
T Consensus 188 ~~-~----~~l~~~~g~p~~~ 203 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLFD 203 (325)
T ss_pred cH-H----HHHHHhCCChhhh
Confidence 11 1 1135688988654
No 282
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.75 E-value=0.024 Score=68.63 Aligned_cols=50 Identities=28% Similarity=0.286 Sum_probs=39.5
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
....++|....+.++.+.+..-...-.-|.|+|..|+|||++|+++++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999998877666433333568999999999999999998854
No 283
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.74 E-value=0.009 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986544
No 284
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.73 E-value=0.009 Score=60.00 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
||||.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999977643
No 285
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.72 E-value=0.017 Score=61.11 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..+++.++|.+|+||||.+..+.......-..+.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 468999999999999999998887665553344444
No 286
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.72 E-value=0.084 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+|.|.|++|+||||+|+.+..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 287
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.72 E-value=0.038 Score=52.80 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 288
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.69 E-value=0.18 Score=54.05 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=32.7
Q ss_pred ccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceE
Q 045202 26 LPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGS 73 (887)
Q Consensus 26 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 73 (887)
.....+...+..+ +.|.|.|.+|+||||+|+.+..++...|-.+
T Consensus 52 ~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 52 ATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred HHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3445566666432 4599999999999999999999887666433
No 289
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.19 Score=51.82 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=40.1
Q ss_pred CCcccccccHHHHHHhHhcC----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 19 NDLVGVELPMKEIESLLRSG----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.++-|.|...+.|.+...-. ...-+-|.++|++|.||+.||++|.-+..+-|
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF 194 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF 194 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce
Confidence 56889999888888765421 12357899999999999999999998755444
No 290
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.66 E-value=0.034 Score=61.41 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=35.3
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+.++.+.|..+-..-.++.|.|.+|+|||||+..+...+...-..++|+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYv 116 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYV 116 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3455555543333446899999999999999999988766554566676
No 291
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.66 E-value=0.5 Score=52.14 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=62.4
Q ss_pred ceEEEEEecCCCH-----------HHHHHHhcCCCCCCCCcEEEEEeCChhhhhhc------CCCceEecCCCChHHHHH
Q 045202 123 KKVLIVFYDVNHP-----------RQIEFLVGRLDLFASGSRIIITTRDRQLLTNC------GVDEKYQMKELVHADALK 185 (887)
Q Consensus 123 kk~LiVlDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~------~~~~~~~v~~L~~~~a~~ 185 (887)
+|-+||+|+.... .+|..... ..+=-+||++|-+....+.. .+-+.+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 4779999998432 22333222 23456799999876665533 345688999999999999
Q ss_pred HHHHhhcCCCCC--------------C----ccHHHHHHHHHHhhCCChHHHHHHHHHH
Q 045202 186 LFSRHAFGGDHP--------------Y----ESHTELTCKTIKYARGVPLALKVWHQAV 226 (887)
Q Consensus 186 Lf~~~af~~~~~--------------~----~~~~~l~~~i~~~~~GlPLal~~lg~~L 226 (887)
+...+.-..... . .....-....++..||--.-|..+++.+
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRi 282 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRI 282 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 998887432110 0 1233444566677777777776666444
No 292
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.66 E-value=0.021 Score=58.06 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
..-+++-|+|.+|+|||++|..+......+...++|++
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44578999999999999999998877666667788884
No 293
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.014 Score=58.33 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=26.9
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..+.+|||.|.+|.||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 294
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.64 E-value=0.047 Score=56.25 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=34.4
Q ss_pred HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc------ceEEEcc
Q 045202 30 EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS------AGSYFAN 77 (887)
Q Consensus 30 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 77 (887)
.|..+|..+-..-.++.|+|.+|+|||++|..+........ ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455543334457899999999999999999877654444 5667874
No 295
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.64 E-value=0.012 Score=58.81 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=25.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
++|.++|+.|+||||.+-.++.+.+.+-..+..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 6899999999999999888877665553344454
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.59 E-value=0.021 Score=56.04 Aligned_cols=114 Identities=14% Similarity=0.069 Sum_probs=59.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcccc--HHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNV--REAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL 120 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 120 (887)
.+++|.|..|.|||||++.+..-.. ...+.+++... .-..+... ...-....-.+.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~laral 86 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAAL 86 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHHH
Confidence 4799999999999999999876432 23344444211 00011100 000011122334555
Q ss_pred CCceEEEEEecCC---CHHHHHHHhcCCCC-CC-CCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 121 TRKKVLIVFYDVN---HPRQIEFLVGRLDL-FA-SGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 121 ~~kk~LiVlDdv~---~~~~~~~l~~~~~~-~~-~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
..++-++++|+.- +....+.+...+.. .. .+..||++|.+....... +++++.+.
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 6677889999873 22222222222111 11 235688888887766544 44555554
No 297
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.58 E-value=0.02 Score=62.53 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=39.1
Q ss_pred CCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 18 TNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+.++|....+.++.+.+..-...-.-|.|+|..|+||+++|++++..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 457999999999988877654333456889999999999999999863
No 298
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=0.0015 Score=66.11 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=38.7
Q ss_pred CCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch--hhhcCCCccEeec
Q 045202 556 RVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE--SIIQLSNLKSLFI 633 (887)
Q Consensus 556 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L 633 (887)
+.+.|+.-++.+.++.+ ...++.|+.|.||-|.++.+. .+..+++|++|+|..|.|.++.+ -+.++++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHHH---HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34444444444333322 334555555555555555432 34445555555555555554442 3445555555555
Q ss_pred ccccc
Q 045202 634 RYCER 638 (887)
Q Consensus 634 ~~c~~ 638 (887)
..|+.
T Consensus 96 ~ENPC 100 (388)
T KOG2123|consen 96 DENPC 100 (388)
T ss_pred ccCCc
Confidence 55543
No 299
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.031 Score=57.13 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=45.6
Q ss_pred hcccCCCCCCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 10 LDDTFQSETNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 10 l~~~~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
+..++.....++=|.|+.+++|.+...-. -....-|.+||.+|.|||-||++|+|+.+.-|
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 34445555677888999999998876532 12356788999999999999999999655444
No 300
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.55 E-value=0.038 Score=53.48 Aligned_cols=128 Identities=13% Similarity=0.010 Sum_probs=67.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceE---EEccccHHHHhcCCHHHHHHHHHHHHhcCCCC----CCC-------
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGS---YFANNVREAEETGRLGDLRQQLLSTLLNDGNV----KSF------- 108 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~---~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~----~~~------- 108 (887)
.+|-|++-.|.||||.|-.+.-+...+--.+ -|+.. ....+-....+.+.-.+...... ..+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg----~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG----AWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC----CcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 5788898899999999988877655443333 24421 11223333333220000000000 001
Q ss_pred cccchHHHHHhhCCce-EEEEEecCC--------CHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecCC
Q 045202 109 PNIGLNFQSKRLTRKK-VLIVFYDVN--------HPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMKE 177 (887)
Q Consensus 109 ~~~~~~~~~~~l~~kk-~LiVlDdv~--------~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~~ 177 (887)
..++.+..++.+...+ =+||||.+- +.+++-.+.. ...++.-||+|-|+..-.-.--+|.+.++..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~---~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ---ERPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH---hCCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 1123344455565555 499999984 2233333333 3346778999999864432222555666654
No 301
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.53 E-value=0.038 Score=54.44 Aligned_cols=27 Identities=41% Similarity=0.498 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
-.+|+|.|++|+||||+|+++......
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999987653
No 302
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.48 E-value=0.01 Score=53.92 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=21.7
Q ss_pred EEEEcCCCcchHHHHHHHHHHHhcccceEEE
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKISRHSAGSYF 75 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 75 (887)
|-|+|.+|+||||+|+++...+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6789999999999999999998888875434
No 303
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.47 E-value=0.025 Score=58.66 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc------cceEEEcc
Q 045202 31 IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH------SAGSYFAN 77 (887)
Q Consensus 31 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 77 (887)
|..+|..+-..-.++.|+|.+|+||||+|..+....... -..++|+.
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 334444333445789999999999999999987543222 35778884
No 304
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.45 E-value=0.068 Score=60.26 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=26.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh--cccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS--RHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~ 76 (887)
-+++.++|++|+||||++..+..... ..-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li 257 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI 257 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 36899999999999999988877654 333344555
No 305
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.41 E-value=0.07 Score=61.31 Aligned_cols=134 Identities=17% Similarity=0.204 Sum_probs=86.0
Q ss_pred CCCCcccccccHHHHHHhHhcC--CCC-eeEEEEEcCCCcchHHHHHHHHHHHh--------cccceEEEccccHHHHhc
Q 045202 17 ETNDLVGVELPMKEIESLLRSG--STN-VCTLGIWGIGGIGKTTIAGAIFNKIS--------RHSAGSYFANNVREAEET 85 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~--~~~-~~vi~I~G~gGiGKTtLA~~v~~~~~--------~~f~~~~~~~~~~~~s~~ 85 (887)
.++.+=+||.+..+|..++..- .++ -..+-|.|-+|+|||..+..|-+.+. ..|+. +.+... .-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm----~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGL----RL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcce----ee
Confidence 6778999999999999988752 222 34899999999999999999988543 22432 333211 11
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC-----CceEEEEEecCCCHHH--HHHHhcCCCCC-CCCcEEEEE
Q 045202 86 GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT-----RKKVLIVFYDVNHPRQ--IEFLVGRLDLF-ASGSRIIIT 157 (887)
Q Consensus 86 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~-----~kk~LiVlDdv~~~~~--~~~l~~~~~~~-~~gsrIiiT 157 (887)
....++...|..++.++.... ..+...+..+.. .+..+|++|+++..-. -+-+..-++|. .++|+++|-
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~---~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTW---DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred cCHHHHHHHHHHhcccCcccH---HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 345677778887776653322 223444555543 4568999999865422 23344445664 467877665
Q ss_pred e
Q 045202 158 T 158 (887)
Q Consensus 158 T 158 (887)
+
T Consensus 546 ~ 546 (767)
T KOG1514|consen 546 A 546 (767)
T ss_pred E
Confidence 4
No 306
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.41 E-value=0.091 Score=67.25 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=25.4
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.-.+-|.++|++|+|||.||++++.+..-.|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPF 1658 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPF 1658 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCce
Confidence 3456789999999999999999998754444
No 307
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.39 E-value=0.053 Score=57.01 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=68.5
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHH--HHH--HhcCCC
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQL--LST--LLNDGN 104 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~i--l~~--l~~~~~ 104 (887)
+.+...|.. ..+..-++|+|..|.|||||++.+...+... .+.+++... .+..-....++...+ +.+ +....+
T Consensus 99 ~~~l~~l~~-~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q~~~~~r~~ 175 (270)
T TIGR02858 99 DKLLPYLVR-NNRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCVNGVPQHDVGIRTD 175 (270)
T ss_pred HHHHHHHHh-CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHhccccccccccccc
Confidence 344444442 2345679999999999999999998866533 333333210 110000111222111 000 000000
Q ss_pred CCCCcccchHHHHHhh-CCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhh
Q 045202 105 VKSFPNIGLNFQSKRL-TRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLT 165 (887)
Q Consensus 105 ~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~ 165 (887)
....... ...+...+ ...+-++++|.+...+.+..+..... .|..||+||-+..+..
T Consensus 176 v~~~~~k-~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 176 VLDGCPK-AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccchH-HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0001111 11222233 35778999999988887777666543 5788999998876644
No 308
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.38 E-value=0.041 Score=53.67 Aligned_cols=126 Identities=19% Similarity=0.129 Sum_probs=60.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccc---cHHHHhcCCH--HHHHHHHHHHHhcCCCCCCCcccchHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANN---VREAEETGRL--GDLRQQLLSTLLNDGNVKSFPNIGLNFQS 117 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~s~~~~~--~~l~~~il~~l~~~~~~~~~~~~~~~~~~ 117 (887)
.+++|.|..|.|||||++.+...... ..+.+++.. +.-+.+...+ ..+.+.+.-. .......-....-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 47999999999999999999874321 223232211 0001111111 1222222110 1011111111223344
Q ss_pred HhhCCceEEEEEecCC---CHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 118 KRLTRKKVLIVFYDVN---HPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 118 ~~l~~kk~LiVlDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
+.+-.++=++++|+-- +.+..+.+...+... +..||++|.+..... .+++++.++
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 5556677788999863 222222222222111 356888888877653 255666553
No 309
>PTZ00301 uridine kinase; Provisional
Probab=95.36 E-value=0.014 Score=59.11 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=24.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
..+|||.|.+|.||||+|+.+.+++..++
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 36899999999999999999988775443
No 310
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.35 E-value=0.019 Score=64.34 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=39.2
Q ss_pred CCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 18 TNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.+.++|+++.++.+...+..+. -|.|+|.+|+|||++|+++......
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 4589999999999888776443 3889999999999999999986543
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.33 E-value=0.077 Score=59.71 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=25.1
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
...+|.++|.+|+||||.|..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999998877654
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.33 E-value=0.049 Score=56.50 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
..+-++|..+-..-.++.|+|.+|+||||+|.++......+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3444555444345578999999999999999998554333445566773
No 313
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.32 E-value=0.073 Score=50.94 Aligned_cols=91 Identities=20% Similarity=0.183 Sum_probs=47.5
Q ss_pred EEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCc--e
Q 045202 47 IWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRK--K 124 (887)
Q Consensus 47 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~k--k 124 (887)
|.|++|+||||+|+.+..+.. |.....-+.+++.....+ .+.+++...+... . ....+.....+++++... .
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s--~~g~~i~~~l~~g-~-~vp~~~v~~ll~~~l~~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDS--ELGKQIQEYLDNG-E-LVPDELVIELLKERLEQPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTS--HHHHHHHHHHHTT-S-S--HHHHHHHHHHHHHSGGTT
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhh--HHHHHHHHHHHhh-c-cchHHHHHHHHHHHHhhhccc
Confidence 689999999999999998752 333222222233222211 2223332222221 1 122233445555555432 3
Q ss_pred EEEEEecC-CCHHHHHHHhc
Q 045202 125 VLIVFYDV-NHPRQIEFLVG 143 (887)
Q Consensus 125 ~LiVlDdv-~~~~~~~~l~~ 143 (887)
--+|||+. .+.+|.+.+..
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHH
T ss_pred ceeeeeeccccHHHHHHHHH
Confidence 45789998 56666655544
No 314
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.31 E-value=0.016 Score=58.98 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
...+|+|.|.+|+||||||+.+...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 315
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.30 E-value=0.039 Score=63.45 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=50.2
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR 119 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~ 119 (887)
..-+|+.++|++|+||||||..|+++.. |. ++=+ -.|.......+-+.|...+.... .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEI----NASDeRt~~~v~~kI~~avq~~s---------------~ 381 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEI----NASDERTAPMVKEKIENAVQNHS---------------V 381 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEe----cccccccHHHHHHHHHHHHhhcc---------------c
Confidence 4568999999999999999999988633 22 2222 34555555666666665554332 2
Q ss_pred h--CCceEEEEEecCCCH
Q 045202 120 L--TRKKVLIVFYDVNHP 135 (887)
Q Consensus 120 l--~~kk~LiVlDdv~~~ 135 (887)
+ .+++.-+|+|.+|..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 257888999999864
No 316
>PRK03839 putative kinase; Provisional
Probab=95.29 E-value=0.014 Score=57.78 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 317
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.27 E-value=0.019 Score=58.37 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+...+|+|+|.+|+||||||+++...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999988654
No 318
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.27 E-value=0.045 Score=53.64 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=62.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCC---------CCCcccch
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNV---------KSFPNIGL 113 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~---------~~~~~~~~ 113 (887)
.+++|.|..|.|||||++.+..... ...+.+++... .... .......+.+ .-+...... ...-+...
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~-~~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGV-DLRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCE-Ehhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHHH
Confidence 5799999999999999999987533 23454544321 0100 0000110000 000000000 00000111
Q ss_pred HHHHHhhCCceEEEEEecCCC------HHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 114 NFQSKRLTRKKVLIVFYDVNH------PRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 114 ~~~~~~l~~kk~LiVlDdv~~------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
-.+-+.+-.++-+++||+... .+.+..+...+. .+..||++|.+...... +++++.+.
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~ 168 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVLD 168 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEEc
Confidence 223455566778999998732 222333333332 35678888988877653 55665553
No 319
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.25 E-value=0.11 Score=55.22 Aligned_cols=52 Identities=13% Similarity=0.004 Sum_probs=35.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEccccHHHHhcCCHHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFANNVREAEETGRLGDLRQQLLSTL 99 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~~~~l~~~il~~l 99 (887)
-.++.|.|.+|+||||+|..+......+ -..++|+. -+....++.+.+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHHH
Confidence 3578899999999999999987765444 45567773 2233455666555543
No 320
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.24 E-value=0.027 Score=58.09 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=39.4
Q ss_pred chHHHHHhhCCceEEEEEecCCC----HHHHHH--HhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 112 GLNFQSKRLTRKKVLIVFYDVNH----PRQIEF--LVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 112 ~~~~~~~~l~~kk~LiVlDdv~~----~~~~~~--l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
....+.+.|..+.=++.||.--+ ..|.+- +...+. ...|.-||+++-|...|... +++++-++
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry-ad~~i~lk 213 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY-ADHLILLK 213 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh-CCEEEEEE
Confidence 34556777888888999997532 222221 222221 24577899999999888776 55555544
No 321
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.072 Score=52.33 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=47.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH-hcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI-SRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
.|.|.|.+|.||||+|+.+.++. -.|.+..-|.. ..... . ..+-+++-.-+.... ..........++.++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r---~~~~~-~-t~lg~~~k~~i~~g~--lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILR---AAIAE-R-TELGEEIKKYIDKGE--LVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhH---hhhcc-C-ChHHHHHHHHHHcCC--ccchHHHHHHHHHHHHh
Confidence 37899999999999999999873 12233222221 11111 1 233333333232222 11112223455555543
Q ss_pred c--eEEEEEecC-CCHHHHHHHhcC
Q 045202 123 K--KVLIVFYDV-NHPRQIEFLVGR 144 (887)
Q Consensus 123 k--k~LiVlDdv-~~~~~~~~l~~~ 144 (887)
. +-.+|+|+. ....+++.+...
T Consensus 75 ~d~~~~~I~dg~PR~~~qa~~l~r~ 99 (178)
T COG0563 75 ADCKAGFILDGFPRTLCQARALKRL 99 (178)
T ss_pred hcccCeEEEeCCCCcHHHHHHHHHH
Confidence 2 227888887 455566555543
No 322
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.23 E-value=0.075 Score=52.16 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999999863
No 323
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.23 E-value=0.016 Score=47.15 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+|+|.|..|+||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 324
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.02 Score=65.60 Aligned_cols=54 Identities=30% Similarity=0.337 Sum_probs=44.7
Q ss_pred CCCcccccccHHHHHHhHhcC----CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc
Q 045202 18 TNDLVGVELPMKEIESLLRSG----STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA 71 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~ 71 (887)
.++-+|+++-.++|.+++.-+ +.+=.+++.+|++|||||.+|+.|+.-+.+.|-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 356889999999999988643 234479999999999999999999998777764
No 325
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.21 E-value=0.013 Score=52.45 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=21.9
Q ss_pred EEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
|-|+|.+|+|||++|+.+...+..++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999888766544
No 326
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.054 Score=55.62 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred hHHHHHhhCCceEEEEEecC----C--CHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEe
Q 045202 113 LNFQSKRLTRKKVLIVFYDV----N--HPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQ 174 (887)
Q Consensus 113 ~~~~~~~l~~kk~LiVlDdv----~--~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~ 174 (887)
...+.+.|..+.=|++||.- | ....+-.+...+.. .|.-|++.|-|-+..... .++++-
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~-~D~vi~ 211 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY-FDRVIC 211 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh-CCEEEE
Confidence 34556788889999999963 3 33334555555443 388999999998776665 444443
No 327
>PRK04040 adenylate kinase; Provisional
Probab=95.19 E-value=0.023 Score=56.47 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|+|+|++|+||||+|+.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998874
No 328
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.17 E-value=0.031 Score=54.33 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=62.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
.+++|.|..|.|||||.+.+..... ...+.+++... ... .....+..+ ..+.--.. ...-....-.+-+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~---~~i~~~~q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVS-FASPRDARR---AGIAMVYQ-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECC-cCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence 4799999999999999999976432 34555665321 110 001111100 00100000 00001112233455566
Q ss_pred ceEEEEEecCC---CHHHHHHHhcCCCC-CCCCcEEEEEeCChhhhhhcCCCceEec
Q 045202 123 KKVLIVFYDVN---HPRQIEFLVGRLDL-FASGSRIIITTRDRQLLTNCGVDEKYQM 175 (887)
Q Consensus 123 kk~LiVlDdv~---~~~~~~~l~~~~~~-~~~gsrIiiTTR~~~v~~~~~~~~~~~v 175 (887)
.+-++++|+.- +.+..+.+...+.. ...|..||++|.+....... +++++.+
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 77788899873 22222222222211 13467788899887755443 4455544
No 329
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.17 E-value=0.032 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
++.+.|++|+||||+++.+...+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999998877655
No 330
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.17 E-value=0.04 Score=64.14 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=42.0
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
....++|....+.++.+.+..-...-..|.|+|..|+|||++|+++++.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999888887644445678999999999999999999853
No 331
>PRK08233 hypothetical protein; Provisional
Probab=95.15 E-value=0.017 Score=57.27 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|.|.+|+||||+|+.+...+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988653
No 332
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.15 E-value=0.035 Score=54.56 Aligned_cols=135 Identities=15% Similarity=0.063 Sum_probs=68.1
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHh----cCCC--CCCC------
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLL----NDGN--VKSF------ 108 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~----~~~~--~~~~------ 108 (887)
....|-|+|-.|-||||.|-.+.-+...+--.+..+.=. .-....+-....+.+ ..+. +... ...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl-Kg~~~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFI-KGAWSTGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEe-cCCCccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHH
Confidence 346799999999999999998877654443333322111 111122323333321 0010 0000 0001
Q ss_pred -cccchHHHHHhhCCce-EEEEEecCCCHH-----HHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecCC
Q 045202 109 -PNIGLNFQSKRLTRKK-VLIVFYDVNHPR-----QIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMKE 177 (887)
Q Consensus 109 -~~~~~~~~~~~l~~kk-~LiVlDdv~~~~-----~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~~ 177 (887)
...+.+..++.+...+ =+||||.+-..- ..+.+...+.....+.-||+|-|+..-.-.--+|.+.++..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 1123344455555544 499999984221 12333333333446779999999864432222455555554
No 333
>PRK00625 shikimate kinase; Provisional
Probab=95.14 E-value=0.017 Score=56.59 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|.++||+|+||||+|+.+.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 334
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.13 E-value=0.02 Score=55.73 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=34.0
Q ss_pred cccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 21 LVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
+||.+..+.++.+.+..-.....-|.|+|..|+||+.+|+++++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 578888899888877653333356779999999999999999984
No 335
>PRK06762 hypothetical protein; Provisional
Probab=95.13 E-value=0.018 Score=56.11 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=22.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
++|.|.|++|+||||+|+++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 336
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.16 Score=55.24 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..++++++|..|+||||++..+......+-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467999999999999999999887664443445555
No 337
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.068 Score=52.13 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=24.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEE
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSY 74 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 74 (887)
+.|-+.|.+|+||||+|+++...++..-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 35778999999999999999886665544333
No 338
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.10 E-value=0.05 Score=53.72 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=61.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHH--------------HHHHHHhcCCCCCCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQ--------------QLLSTLLNDGNVKSF 108 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~--------------~il~~l~~~~~~~~~ 108 (887)
.+++|.|..|.|||||++.+..... .-.+.+++... ..... ...+.+ .+.+.+. .....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~~--~~~~~~~i~~~~q~~~~~~~tv~~~i~---~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGV-PVSDL--EKALSSLISVLNQRPYLFDTTLRNNLG---RRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCE-EHHHH--HHHHHhhEEEEccCCeeecccHHHhhc---ccCCH
Confidence 4799999999999999999987432 22344444321 11000 000000 0111000 00000
Q ss_pred cccchHHHHHhhCCceEEEEEecCCC---HHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 109 PNIGLNFQSKRLTRKKVLIVFYDVNH---PRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 109 ~~~~~~~~~~~l~~kk~LiVlDdv~~---~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
-....-.+-+.+-.++=++++|+... ...-+.+...+.....+..||++|.+...... +++++.+.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 01112223455566777889998742 22222222221111236778899988887653 55665553
No 339
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.01 Score=36.03 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=11.4
Q ss_pred CCcEEEcCCCCCcccchhhh
Q 045202 604 SVRELHLNGNNFERIPESII 623 (887)
Q Consensus 604 ~L~~L~L~~n~l~~lp~~l~ 623 (887)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666665543
No 340
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.01 E-value=0.12 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=21.8
Q ss_pred EEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
|.++|++|+||||+|+++.......
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999998876543
No 341
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.94 E-value=0.075 Score=58.44 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=63.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc-cccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA-NNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT 121 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (887)
..|.|.|..|.||||+++++.+.+..+...+++. .+..+...+ +.. .+..+.............++..++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~~~--------~~i~q~evg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-NKR--------SLINQREVGLDTLSFANALRAALR 193 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-Ccc--------ceEEccccCCCCcCHHHHHHHhhc
Confidence 6799999999999999999988776655555443 221111100 000 000000111112234566788888
Q ss_pred CceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 045202 122 RKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQ 162 (887)
Q Consensus 122 ~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 162 (887)
...=.|++|.+.+.+.+...... ...|-.|+.|.-...
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 99999999999988776653332 234555655554433
No 342
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.94 E-value=0.13 Score=57.54 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=33.2
Q ss_pred ccHHHHHHhHh-----cCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 26 LPMKEIESLLR-----SGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 26 ~~~~~l~~~L~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..++++..||. ...-+.+|+.|.|++|+||||-.+.+....
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34677888888 444567899999999999999999988754
No 343
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.057 Score=51.91 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
-|.++||.|+||||+.+++...+.-+|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999988665544
No 344
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.045 Score=52.77 Aligned_cols=125 Identities=21% Similarity=0.208 Sum_probs=65.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
.+++|+|..|.|||||++.+...+. ...+.+++... .... ....+... .+.--.. ...-+...-.+.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~~~~~----~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLEELRR----RIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHHHHHh----ceEEEee-CCHHHHHHHHHHHHHhc
Confidence 5899999999999999999987543 34555665321 1100 00111111 1100000 00001112224455566
Q ss_pred ceEEEEEecCC---CHHHHHHHhcCCCC-CCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 123 KKVLIVFYDVN---HPRQIEFLVGRLDL-FASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 123 kk~LiVlDdv~---~~~~~~~l~~~~~~-~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
.+-++++|+.. +.+....+...+.. ...+..||++|.+....... .++++.+.
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 67889999984 22222222222211 12256789999888777664 45666553
No 345
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.058 Score=52.99 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHh--cCCCCC-C----------C-
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLL--NDGNVK-S----------F- 108 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~--~~~~~~-~----------~- 108 (887)
.+++|+|..|.|||||++.+..... ...+.+++... .... .. .... ..+. .+.... . +
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~-~~-~~~~----~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGK-DIKK-EP-EEVK----RRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-Eccc-ch-Hhhh----ccEEEEecCCccccCCcHHHHhhcCH
Confidence 4799999999999999999876432 23455554321 0000 00 0000 0010 000000 0 0
Q ss_pred cccchHHHHHhhCCceEEEEEecCCC---H---HHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEec
Q 045202 109 PNIGLNFQSKRLTRKKVLIVFYDVNH---P---RQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQM 175 (887)
Q Consensus 109 ~~~~~~~~~~~l~~kk~LiVlDdv~~---~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v 175 (887)
-+...-.+-+.+..++=++++|+.-. . +.+..+...+. ..|..||++|.+....... +++++.+
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 00112234455667788999998732 2 22222222222 2367799999988776644 4555554
No 346
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.88 E-value=0.023 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..|.++|++|+||||+|+++..+..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999864
No 347
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.85 E-value=0.071 Score=56.85 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
..++++++|.+|+||||++..+......
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999998876643
No 348
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.84 E-value=0.0057 Score=70.99 Aligned_cols=35 Identities=37% Similarity=0.523 Sum_probs=15.4
Q ss_pred CCcccEEecccCC-CCC--ccccccCCCCCcEEEcCCC
Q 045202 579 LQNLLDLSLNDCC-IME--LPESLGLLSSVRELHLNGN 613 (887)
Q Consensus 579 l~~L~~L~Ls~n~-l~~--lp~~~~~l~~L~~L~L~~n 613 (887)
+++|+.|.+.+|. +++ +-.....+++|++|+|+++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4445555544444 332 2223334444555555544
No 349
>PRK06547 hypothetical protein; Provisional
Probab=94.84 E-value=0.042 Score=53.76 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
....+|+|.|.+|+||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998864
No 350
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.84 E-value=0.04 Score=56.91 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=26.3
Q ss_pred CCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 39 STNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 39 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.....+|||.|..|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3567899999999999999999998866543
No 351
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.84 E-value=0.064 Score=55.97 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999763
No 352
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.15 Score=55.99 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=27.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhccc--ceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHS--AGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~ 76 (887)
-.+++++|+.|+||||++..+..+...++ ..+.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 46899999999999999999988754443 334454
No 353
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.79 E-value=0.0004 Score=78.88 Aligned_cols=172 Identities=22% Similarity=0.249 Sum_probs=95.1
Q ss_pred cchhcCCCCcEEecccCCCCcc----CCcccCCC-CCCcEEEeeCCCCCC----CCchhhcCCCCCceeeccCccCccC-
Q 045202 478 SSIECLSKLLHLDLVDCKTLKS----LPSGLGKL-KSLGILSIDGCSNLQ----RLPEELGNLQALDSLHAVGTAITEV- 547 (887)
Q Consensus 478 ~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~L-~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~i~~l- 547 (887)
..+...+.|+.|++++|.+... +-..+... ..|++|++..|.... .+.+.+.....|+.++++.|.+...
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 3455566777777777664421 11112222 456666666665543 2344555566677777776666411
Q ss_pred ----CccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-----ccccccCCCC-CcEEEcCCCCCc-
Q 045202 548 ----PPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-----LPESLGLLSS-VRELHLNGNNFE- 616 (887)
Q Consensus 548 ----p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~-L~~L~L~~n~l~- 616 (887)
+..+. ..+....++++|++++|.++. +...+...++ +..|++..|.+.
T Consensus 189 ~~~l~~~l~---------------------~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 189 LLVLSQALE---------------------SAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hHHHhhhhh---------------------hhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 11111 112345667777777777663 2234445555 666777777665
Q ss_pred ----ccchhhhcC-CCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCC
Q 045202 617 ----RIPESIIQL-SNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSS 670 (887)
Q Consensus 617 ----~lp~~l~~l-~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~ 670 (887)
.+...+..+ ..++.++++.|.....-...-......|+.++++.+..|.+....
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 334455555 677888888886433222211112137778888888888777643
No 354
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.79 E-value=0.089 Score=53.18 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=35.3
Q ss_pred HHHhhCCceEEEEEecCCC---HHHHH-HHhcCCCCC-CC-CcEEEEEeCChhhhhhcCCCceEecCC
Q 045202 116 QSKRLTRKKVLIVFYDVNH---PRQIE-FLVGRLDLF-AS-GSRIIITTRDRQLLTNCGVDEKYQMKE 177 (887)
Q Consensus 116 ~~~~l~~kk~LiVlDdv~~---~~~~~-~l~~~~~~~-~~-gsrIiiTTR~~~v~~~~~~~~~~~v~~ 177 (887)
+.+.+..+.-++++|+... ....+ .+...+... .. |..||++|.+.+.... +++++.++.
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~~ 197 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVEK 197 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEee
Confidence 4456667888999999842 22223 333322222 22 5668888888877643 566776643
No 355
>PRK13947 shikimate kinase; Provisional
Probab=94.77 E-value=0.023 Score=55.70 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.7
Q ss_pred EEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
|.|+||+|+||||+|+.+.+++.-.|
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 88999999999999999998875443
No 356
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.71 E-value=0.039 Score=51.02 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=28.5
Q ss_pred cHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 27 PMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 27 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+.+++-+.|...-..-.+|.+.|.-|.||||+++.+...+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444544444322233589999999999999999998864
No 357
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.68 E-value=0.13 Score=58.59 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=35.5
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+.++.+.|..+-..-.++.|.|.+|+|||||+..+......+-..++|+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYv 114 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYV 114 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 4556666654433446899999999999999999988765444456677
No 358
>PRK08356 hypothetical protein; Provisional
Probab=94.67 E-value=0.091 Score=52.74 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=18.9
Q ss_pred eEEEEEcCCCcchHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAI 62 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v 62 (887)
.+|+|.|++|+||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 359
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.66 E-value=0.079 Score=56.95 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 28 MKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 28 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
...|..+|. .+=..-+++-|+|++|+||||||-.+.......-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 345555665 23344578899999999999999998776655566678884
No 360
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.1 Score=59.36 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.-.+|+|+|.+|+||||++..+......+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34799999999999999999988765443
No 361
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.15 Score=56.44 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..++|.++|..|+||||.+..+.....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999988887654
No 362
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.64 E-value=0.098 Score=51.96 Aligned_cols=27 Identities=33% Similarity=0.478 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.-.++.|.|.+|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998764
No 363
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.63 E-value=0.11 Score=60.50 Aligned_cols=51 Identities=25% Similarity=0.207 Sum_probs=39.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
....++++|....+.++.+.+..-...-..|.|+|..|+||+++|++++..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 345578999999888887766532222345889999999999999998764
No 364
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.63 E-value=0.083 Score=56.76 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 28 MKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 28 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
...|-.+|. .+=..-+++-|+|.+|+||||||..+......+-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 345555564 33345578999999999999999988776655555667884
No 365
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.59 E-value=0.099 Score=59.54 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=35.3
Q ss_pred cHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 27 PMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 27 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
-+.++.++|..+-..-.++.|.|.+|+|||||+..+......+-..++|+
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYv 128 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYV 128 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 34556665554333446899999999999999999877665443456677
No 366
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.56 E-value=0.13 Score=52.14 Aligned_cols=61 Identities=20% Similarity=0.274 Sum_probs=39.4
Q ss_pred hHHHHHhhCCceEEEEEecC----CC--HHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 113 LNFQSKRLTRKKVLIVFYDV----NH--PRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 113 ~~~~~~~l~~kk~LiVlDdv----~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
...+-+.|-..+-+|+-|+- |. .+..-.+..... ...|..||+.|-|+.++.. +++++.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 44566778888889999975 22 222333333221 2458889999999999986 45566554
No 367
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.55 E-value=0.032 Score=55.61 Aligned_cols=26 Identities=31% Similarity=0.230 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
++.+|.|.|++|+||||+|+.+..+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 368
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.54 E-value=0.053 Score=59.72 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=40.2
Q ss_pred CCcccccccHHHHHHhHhcC------------CCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 19 NDLVGVELPMKEIESLLRSG------------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
+++||.+..++.+...+... ....+-|.++|++|+||||+|+++...+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 57999999998887666531 11236788999999999999999998765544
No 369
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.50 E-value=0.14 Score=49.61 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=37.6
Q ss_pred hHHHHHhhCCceEEEEEecC----CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhc
Q 045202 113 LNFQSKRLTRKKVLIVFYDV----NHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNC 167 (887)
Q Consensus 113 ~~~~~~~l~~kk~LiVlDdv----~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 167 (887)
...|.+.+-+++-+++-|.- |-...|+-+.-.-.-...|..|+++|-|.++...+
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence 44566777788888888864 44444554322112235799999999999998876
No 370
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.49 E-value=0.067 Score=52.56 Aligned_cols=126 Identities=19% Similarity=0.220 Sum_probs=62.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCC---------CCCcccch
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNV---------KSFPNIGL 113 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~---------~~~~~~~~ 113 (887)
.+++|+|..|.|||||++.+..... ...+.+++... ... ........+.+. -+...... ...-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~qr 104 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQR 104 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHHH
Confidence 4799999999999999999987433 23444444221 110 001111111100 00000000 00001112
Q ss_pred HHHHHhhCCceEEEEEecCC---CH---HHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 114 NFQSKRLTRKKVLIVFYDVN---HP---RQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 114 ~~~~~~l~~kk~LiVlDdv~---~~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
-.+-+.+-.++=++++|+.- +. .++..+...+. ..|..||++|.+..... . +++++.+.
T Consensus 105 v~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 105 LGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 22334555666788999873 22 22223332222 24677889998887764 3 56666553
No 371
>PRK09354 recA recombinase A; Provisional
Probab=94.46 E-value=0.1 Score=56.50 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=37.4
Q ss_pred HHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccc
Q 045202 28 MKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANN 78 (887)
Q Consensus 28 ~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~ 78 (887)
...|-.+|. .+=..-+++-|+|++|+||||||-.+.......-...+|++.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 445566665 333445789999999999999999887766556667788843
No 372
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.43 E-value=0.2 Score=53.34 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=26.2
Q ss_pred eEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 124 KVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 124 k~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
+.+||+|...+. .++..+.. ..|.||||+.|---.++
T Consensus 352 ~~FiIIDEaQNLTpheikTilt---R~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILT---RAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCHHHHHHHHH---hccCCCEEEEcCCHHHc
Confidence 469999999865 34555543 47899999998754433
No 373
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.21 Score=55.29 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..++.++|.+|+||||+|..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988654
No 374
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.40 E-value=0.045 Score=53.14 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=25.6
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
....+++|+|..|+|||||++.+...+..+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 345799999999999999999999876653
No 375
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.39 E-value=0.061 Score=59.26 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=40.1
Q ss_pred CCcccccccHHHHHHhHhcC--------C----CCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 19 NDLVGVELPMKEIESLLRSG--------S----TNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~--------~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
..++|.+..++.+..++... . ...+-|.++|++|+||||+|+++...+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 47999999999988777431 0 1135789999999999999999988765443
No 376
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.12 Score=51.79 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999985
No 377
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=0.098 Score=52.76 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=35.5
Q ss_pred CcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 20 DLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
++=|-.+++++|.+.... +-+...-|..+|++|.|||-.|++|.|+....
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 445566667776665432 11345678899999999999999999975533
No 378
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.35 E-value=0.023 Score=58.18 Aligned_cols=24 Identities=29% Similarity=-0.004 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
+.+++.|+|..|.||||+.+.+.-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457899999999999999988764
No 379
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.34 E-value=0.69 Score=47.48 Aligned_cols=184 Identities=13% Similarity=0.152 Sum_probs=103.9
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc------ccceEEEccccHH------H--
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR------HSAGSYFANNVRE------A-- 82 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~------~-- 82 (887)
..+.+.++++.-.++.++.. ..+..-+.++|+.|.||-|.+..+.+++-+ +-+...|...... +
T Consensus 11 sl~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 34457777777777777665 335667889999999999988877775432 2344455433221 1
Q ss_pred --------HhcCC-HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceE-EEEEecCCCH--HHHHHHhcCCCCCCC
Q 045202 83 --------EETGR-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKV-LIVFYDVNHP--RQIEFLVGRLDLFAS 150 (887)
Q Consensus 83 --------s~~~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~-LiVlDdv~~~--~~~~~l~~~~~~~~~ 150 (887)
|+... -.-+.++++.++......... ..+.| ++|+-.+++. +.-..|.........
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhc------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 11111 113445555555443222111 12233 5666666543 222333333333345
Q ss_pred CcEEEEEeCC--hhhhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 151 GSRIIITTRD--RQLLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 151 gsrIiiTTR~--~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
.+|+|+.--. +-+...-...-.++++..+++|-...+++-+-+..-.-+ .+++++|+++++|.-
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nL 222 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNL 222 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccH
Confidence 6777763322 111111112347899999999999999887744332222 689999999998864
No 380
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.32 E-value=0.086 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.461 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998764
No 381
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.31 E-value=0.056 Score=54.42 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=28.6
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+...+|+|+|++|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3456999999999999999999998765443334555
No 382
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.29 E-value=0.045 Score=54.07 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+|+|.|.+|+||||+|+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 383
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.28 E-value=0.17 Score=58.47 Aligned_cols=55 Identities=15% Similarity=0.305 Sum_probs=37.2
Q ss_pred HHhhCCceEEEEEecC------CCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecCC
Q 045202 117 SKRLTRKKVLIVFYDV------NHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMKE 177 (887)
Q Consensus 117 ~~~l~~kk~LiVlDdv------~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~~ 177 (887)
-..+-.+.=++|||.- +..++++.....+ +|+ ||+.|-|+...... +.+++.+++
T Consensus 451 a~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~~v-a~~i~~~~~ 511 (530)
T COG0488 451 AKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLDRV-ATRIWLVED 511 (530)
T ss_pred HHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHHhh-cceEEEEcC
Confidence 3445667889999965 3344454444433 344 88889999998887 567887775
No 384
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.28 E-value=0.039 Score=54.34 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
++|.+.|++|+||||+|+++..+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999988654
No 385
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.19 Score=54.44 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=60.0
Q ss_pred ccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcC-CC
Q 045202 26 LPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLND-GN 104 (887)
Q Consensus 26 ~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~-~~ 104 (887)
.-+.++.+.|-.+--.=.+|.|=|-+|||||||.-.+..++..+- .+.++ +.+.+..++.-. +..+.-. .+
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYV------sGEES~~QiklR-A~RL~~~~~~ 148 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYV------SGEESLQQIKLR-ADRLGLPTNN 148 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEE------eCCcCHHHHHHH-HHHhCCCccc
Confidence 344566666653322335899999999999999999999887776 66777 444444443222 2223221 11
Q ss_pred CCCCcccchHHHHHhh-CCceEEEEEecCCC
Q 045202 105 VKSFPNIGLNFQSKRL-TRKKVLIVFYDVNH 134 (887)
Q Consensus 105 ~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~ 134 (887)
...-.+...+.|.+.+ ..+.-++|+|-+..
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 1122223345555555 35667999998854
No 386
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.25 E-value=0.065 Score=57.93 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.1
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
...+++++|+.|+||||++..+...+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999998876654
No 387
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.23 E-value=0.21 Score=53.05 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=24.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.+++|+|..|.|||||++.++.-.. -.+.+++
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i 62 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQI 62 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEE
Confidence 4799999999999999999987543 2344444
No 388
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.23 E-value=0.059 Score=50.73 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=25.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEE
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSY 74 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 74 (887)
.+|+|+|..|+|||||++.+.+++.++--.++
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceE
Confidence 47999999999999999999998875543334
No 389
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.22 E-value=0.05 Score=51.83 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=29.5
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+...+|-..|.+|.||||||.+++.++..+--...-+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 3456899999999999999999999887665544433
No 390
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.20 E-value=0.033 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+|+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 391
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.18 E-value=0.14 Score=54.01 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=22.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.|.|+|.+|.||||+|+.+...+...=..+.++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 588999999999999999988765532333444
No 392
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.039 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|-||=|+||||||+++.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999988765
No 393
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.14 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+++|+|..|.|||||++.+.....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 5899999999999999999877543
No 394
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.12 E-value=0.13 Score=46.67 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=34.2
Q ss_pred CCcccccccHHHHHHhHh----cC-CCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLR----SG-STNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~----~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
+.++|-.-..+.|.+.+. .. +...-|++.+|.+|+|||.+|+.+.+.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 467777665555555544 32 345679999999999999988887774
No 395
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.11 E-value=0.054 Score=63.80 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=54.9
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh-cccceEEEccccHHHHhcCCHHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
++...++++|.+..++.|...+... +.+.++|.+|+||||+|+++.+.+. .+++...|..+ ......++.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~ 96 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKI 96 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHH
Confidence 3445578999998888888877643 4688999999999999999988653 33577778855 333445566
Q ss_pred HHHHHH
Q 045202 93 QQLLST 98 (887)
Q Consensus 93 ~~il~~ 98 (887)
+.+..+
T Consensus 97 ~~v~~~ 102 (637)
T PRK13765 97 RTVPAG 102 (637)
T ss_pred HHHHHh
Confidence 555543
No 396
>PRK10867 signal recognition particle protein; Provisional
Probab=94.09 E-value=0.3 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..+|.++|.+|+||||.|..+...+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 6799999999999999988887766555
No 397
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.09 E-value=0.077 Score=54.30 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=31.2
Q ss_pred cHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 27 PMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 27 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
...++.+.+.....+..+|||.|.+|+||+||..++...+..+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3455666565555567899999999999999999988766544
No 398
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.07 E-value=0.034 Score=55.99 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+|||.|.+|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 399
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.06 E-value=0.037 Score=56.65 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 400
>PRK13949 shikimate kinase; Provisional
Probab=94.04 E-value=0.041 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
-|.|+|+.|.||||+|+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999988764
No 401
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.02 E-value=0.044 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEcCCCcchHHHHHHHHHHHh
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
|.|+|++|.||||+|+.+..+..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 402
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.02 E-value=0.29 Score=55.71 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=45.5
Q ss_pred cccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh-cccceEEEccccHHHHhcCCHHHHHHHHHHHH
Q 045202 21 LVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFANNVREAEETGRLGDLRQQLLSTL 99 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l 99 (887)
..|...-...|-+++. +-..-.++.|-|.+|+||||+|..+...+. .+-..++|+ |-+-...++...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~f------SlEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF------SLEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEE------ECCCCHHHHHHHHHHHH
Confidence 3444444555555443 222335788999999999999999986654 333345566 33445567777766654
Q ss_pred h
Q 045202 100 L 100 (887)
Q Consensus 100 ~ 100 (887)
.
T Consensus 247 ~ 247 (421)
T TIGR03600 247 S 247 (421)
T ss_pred c
Confidence 3
No 403
>PRK06217 hypothetical protein; Validated
Probab=94.00 E-value=0.04 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|.|.|++|.||||+|+++.++..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998753
No 404
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.00 E-value=0.079 Score=57.34 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC-CHHHHHHHHHHHHhcCCCC-CCCcccchHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG-RLGDLRQQLLSTLLNDGNV-KSFPNIGLNFQSKR 119 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~-~~~~l~~~il~~l~~~~~~-~~~~~~~~~~~~~~ 119 (887)
-..+.|.|..|.||||+++++...+.... ..+.+.+..+..... +... +...... ....-...+.++..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHH
Confidence 46899999999999999999987654332 344454333322111 0000 0000000 01111234566777
Q ss_pred hCCceEEEEEecCCCHHHHHHHhcCCCCCCCCcE-EEEEeCChh
Q 045202 120 LTRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSR-IIITTRDRQ 162 (887)
Q Consensus 120 l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsr-IiiTTR~~~ 162 (887)
++...=.|++|.+.+.+.++.+... . .|-. ++.|+....
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~-~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV-N---TGHPGSITTLHAGS 254 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH-h---cCCCeEEEEEeCCC
Confidence 8888889999999988777654432 2 2222 466665444
No 405
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.96 E-value=0.042 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|.|.|..|+||||+|+.+..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 406
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.93 E-value=0.14 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|.|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 407
>PRK01184 hypothetical protein; Provisional
Probab=93.91 E-value=0.15 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=17.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+|+|+|++|.||||+|+ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 379999999999999987 444
No 408
>PRK13946 shikimate kinase; Provisional
Probab=93.89 E-value=0.046 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+.|.+.||.|+||||+|+.+.+++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5699999999999999999998864
No 409
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.87 E-value=0.068 Score=57.45 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=27.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.+++.+.|.|||||||+|.+..-+.........-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999776665555444444
No 410
>PRK13948 shikimate kinase; Provisional
Probab=93.87 E-value=0.052 Score=53.55 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=24.6
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..+.|.++||.|+||||+++.+.++....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 44679999999999999999998876533
No 411
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.87 E-value=0.062 Score=53.49 Aligned_cols=93 Identities=20% Similarity=0.169 Sum_probs=52.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhc-CCCC-CCCcccchHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLN-DGNV-KSFPNIGLNFQSKR 119 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~-~~~~-~~~~~~~~~~~~~~ 119 (887)
-..++|.|..|.||||+++++...+... ...+.+.+..+...... ... ++.. .... ........+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP------NWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC------CEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 3579999999999999999998765432 23444433222211000 000 0000 0000 01112234556667
Q ss_pred hCCceEEEEEecCCCHHHHHHHh
Q 045202 120 LTRKKVLIVFYDVNHPRQIEFLV 142 (887)
Q Consensus 120 l~~kk~LiVlDdv~~~~~~~~l~ 142 (887)
++..+=.++++.+.+.+.++.+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 77788889999999887776544
No 412
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.86 E-value=0.052 Score=55.11 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccce
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAG 72 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~ 72 (887)
+....|.++||+|.||||+.+.++..+..++..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 345688899999999999999999887766653
No 413
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.86 E-value=0.043 Score=52.24 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.5
Q ss_pred EEEEEcCCCcchHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIF 63 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~ 63 (887)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999999986
No 414
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.83 E-value=0.043 Score=57.98 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.4
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..+.+.+... -+-+.++|..|+|||++++....+.
T Consensus 23 ~~ll~~l~~~---~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLSN---GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHC---TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHc---CCcEEEECCCCCchhHHHHhhhccC
Confidence 3455544432 2567899999999999999987653
No 415
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.83 E-value=0.18 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|.|..|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
No 416
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.80 E-value=2.6 Score=45.49 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=33.1
Q ss_pred eEecCCCChHHHHHHHHHhhcCCCCCC-ccHHHHHHHHHHhhCCChHHH
Q 045202 172 KYQMKELVHADALKLFSRHAFGGDHPY-ESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 172 ~~~v~~L~~~~a~~Lf~~~af~~~~~~-~~~~~l~~~i~~~~~GlPLal 219 (887)
.++|++++.+|+..++..++-.+--.. ...+...++..--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774333222 233445556656669999654
No 417
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.77 E-value=0.088 Score=59.81 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=50.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc-ccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCC-----CcccchHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR-HSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKS-----FPNIGLNFQ 116 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~-----~~~~~~~~~ 116 (887)
...+|+|.+|+|||||++.|.+.+.. +-+..+++..|.+-.. .+.++.+.+-.++........ ......-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe--EVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE--EVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh--hHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999997744 3345555555533322 223444333111111111110 001111223
Q ss_pred HHhh--CCceEEEEEecCCCH
Q 045202 117 SKRL--TRKKVLIVFYDVNHP 135 (887)
Q Consensus 117 ~~~l--~~kk~LiVlDdv~~~ 135 (887)
-+++ .++.|||++|++-..
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 3444 689999999998544
No 418
>PRK05439 pantothenate kinase; Provisional
Probab=93.76 E-value=0.08 Score=56.60 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=24.7
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999999998876543
No 419
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.76 E-value=0.15 Score=50.97 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=21.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.++.|+|.+|+||||++..+...+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999998877654
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.73 E-value=0.081 Score=53.85 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++.|+|.-|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 421
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.73 E-value=0.052 Score=53.67 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.++.|.|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987653
No 422
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.69 E-value=0.16 Score=55.97 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=57.5
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhc----ccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISR----HSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQ 116 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~----~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~ 116 (887)
..+-+-|||..|.|||.|+-..|+.+.. +...+-|+ .++-+.+..-. .....+..+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm----------------~~vh~~l~~~~----~~~~~l~~v 120 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFM----------------LDVHSRLHQLR----GQDDPLPQV 120 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHH----------------HHHHHHHHHHh----CCCccHHHH
Confidence 4678999999999999999999995432 12112222 22222222111 112235556
Q ss_pred HHhhCCceEEEEEecCC--C---HHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 117 SKRLTRKKVLIVFYDVN--H---PRQIEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 117 ~~~l~~kk~LiVlDdv~--~---~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
.+.+.++..||.+|... + ..-+..+...+ +..|. |+|+|.|...
T Consensus 121 a~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 121 ADELAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNRPP 169 (362)
T ss_pred HHHHHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCCCh
Confidence 67777777899999863 2 22244454443 34565 5555555443
No 423
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.68 E-value=0.18 Score=60.12 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..++|+|..|.|||||++.+....
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999987643
No 424
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.68 E-value=0.12 Score=54.79 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCCCcccccccHHH---HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc
Q 045202 17 ETNDLVGVELPMKE---IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA 71 (887)
Q Consensus 17 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~ 71 (887)
..+.+||.....+. +.+++..+.-.=+.|.|+|++|.|||+||-.+...+...-+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 45679998766654 66777766555688999999999999999999998865533
No 425
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.66 E-value=0.09 Score=56.51 Aligned_cols=60 Identities=25% Similarity=0.286 Sum_probs=41.7
Q ss_pred CCCCcccccccHHH---HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 17 ETNDLVGVELPMKE---IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 17 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
....+||.....+. +.+++..+.-.=+.|.+.|++|.|||+||-++...+....+.+.-.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~is 84 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSIS 84 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcc
Confidence 35689998776654 5566666554457899999999999999999999988776654433
No 426
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.52 Score=56.99 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCcccccccHHHHHHhHhcCC----C--CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGS----T--NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~----~--~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
+.++|-++.+..|...+.... . ..-.+.+.|+.|+|||-||+++...+....+..+-+ + +.+.+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~Iri----D------mse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRL----D------MSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEe----c------hhhhh
Confidence 468899999999888876532 1 356788999999999999999999887666665555 2 22333
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhhCCceE-EEEEecCCCHH
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKV-LIVFYDVNHPR 136 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~-LiVlDdv~~~~ 136 (887)
+ .+++.+...+-.. .+....+.+.+++++| .|.+|||+..+
T Consensus 632 e--vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred h--hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcC
Confidence 3 2233222221111 1224467777877775 77789997543
No 427
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.59 E-value=0.026 Score=34.23 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=16.2
Q ss_pred cccEEecccCCCCCccccccC
Q 045202 581 NLLDLSLNDCCIMELPESLGL 601 (887)
Q Consensus 581 ~L~~L~Ls~n~l~~lp~~~~~ 601 (887)
+|++|+|++|+++.+|+.++.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888888888876654
No 428
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.57 E-value=0.2 Score=54.13 Aligned_cols=50 Identities=12% Similarity=0.267 Sum_probs=32.5
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH--Hh----cccceEEEcc
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK--IS----RHSAGSYFAN 77 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~--~~----~~f~~~~~~~ 77 (887)
...|..+|..+=..-+++-|+|.+|+|||+||..+.-. .. ..=..++|++
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 34555556543344578889999999999999776532 21 1224567883
No 429
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.57 E-value=0.049 Score=51.14 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=21.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.|+|+|+.|+||||||+.+.......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765443
No 430
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.55 E-value=0.11 Score=61.57 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=49.7
Q ss_pred CCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEccccHHHHhcCCHHHHHHHHH
Q 045202 18 TNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFANNVREAEETGRLGDLRQQLL 96 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~~~~l~~~il 96 (887)
.++++|.+..++.+...+... +-+.++|++|+||||+|+++.+.+... |...+++.+. ..+..++.+.+.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~-----~~~~~~~~~~v~ 87 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP-----EDPNMPRIVEVP 87 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC-----CCCchHHHHHHH
Confidence 367899998888888777643 245699999999999999999877544 3444555332 223345555555
Q ss_pred HHH
Q 045202 97 STL 99 (887)
Q Consensus 97 ~~l 99 (887)
.++
T Consensus 88 ~~~ 90 (608)
T TIGR00764 88 AGE 90 (608)
T ss_pred Hhh
Confidence 443
No 431
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.88 Score=53.20 Aligned_cols=143 Identities=18% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCcccccccHHHHHHhHhcC----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCH
Q 045202 19 NDLVGVELPMKEIESLLRSG----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRL 88 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~ 88 (887)
+++=|.|+...+|.+-+... -....-|-.||++|.|||-+||+|+-+.+=.| +. +..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS----VKGP--- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS----VKGP--- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee----ecCH---
Confidence 56667887777887766541 12245788999999999999999988755333 31 1111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH------------------H-HHHHhcCCCCCC
Q 045202 89 GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR------------------Q-IEFLVGRLDLFA 149 (887)
Q Consensus 89 ~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~------------------~-~~~l~~~~~~~~ 149 (887)
+++. .-.++ +++...+...+.-..+++.|++|.+|+.. | +.++.+..+...
T Consensus 740 -ELLN----MYVGq-----SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 740 -ELLN----MYVGQ-----SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred -HHHH----HHhcc-----hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 1111 11111 11122333444456789999999997541 1 233333333233
Q ss_pred CCcEEEEEeCChhhhhh-----cCCCceEecCCCChHHH
Q 045202 150 SGSRIIITTRDRQLLTN-----CGVDEKYQMKELVHADA 183 (887)
Q Consensus 150 ~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~~~a 183 (887)
.+-=||=+|-.+++... -+-++.+.|..=+.+++
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHH
Confidence 34445555554555432 12366677766555554
No 432
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.51 E-value=0.052 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
++.|.|++|+||||+|+.+.++
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999876
No 433
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.51 E-value=0.32 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEcCCCcchHHHHHHHHHHH
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~ 66 (887)
|.|.|++|+||||+|+.+.++.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998864
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.50 E-value=0.15 Score=54.71 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=56.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc--cceEEEccccHHHHhcC-CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH--SAGSYFANNVREAEETG-RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR 119 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~s~~~-~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~ 119 (887)
+.+.|.|..|.||||+++++.+.+... -...+-+++..+..-.. +... +... .......+.++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~~~~----~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------LRTS----DDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------EEec----CCCCCHHHHHHHH
Confidence 457899999999999999999887553 23445555444432111 1000 0000 0111345777888
Q ss_pred hCCceEEEEEecCCCHHHHHHHh
Q 045202 120 LTRKKVLIVFYDVNHPRQIEFLV 142 (887)
Q Consensus 120 l~~kk~LiVlDdv~~~~~~~~l~ 142 (887)
|+...=.||+..+.+.+.++.+.
T Consensus 201 LR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred hcCCCCEEEEeccCCHHHHHHHH
Confidence 88888899999999988776543
No 435
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.48 E-value=0.063 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.5
Q ss_pred EEEEcCCCcchHHHHHHHHHHHhc
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
|.|.|.+|+||||+++.+.+.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999997753
No 436
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.48 E-value=0.086 Score=60.42 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=28.0
Q ss_pred HHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 32 ESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 32 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
...+.....++.+|||.|..|.||||||+.+...+
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 34444445578899999999999999999998764
No 437
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.45 E-value=0.05 Score=53.14 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=27.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh-cccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 76 (887)
..++.+.|+.|+|||.+|+++.+.+. ......+-+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 35788999999999999999999877 444444444
No 438
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.44 E-value=0.067 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..|.|+|+.|.||||+|+.+.++..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4599999999999999999988654
No 439
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.44 E-value=0.085 Score=50.65 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
|++|+|+.|+||||++.++...++.+--.++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 589999999999999999999876653233444
No 440
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.43 E-value=0.21 Score=59.58 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
..++|+|..|.|||||++.+..
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999865
No 441
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.41 E-value=0.33 Score=51.15 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=60.9
Q ss_pred ccccccHH-HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHh
Q 045202 22 VGVELPMK-EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLL 100 (887)
Q Consensus 22 vGr~~~~~-~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~ 100 (887)
.|...+.. .+..++.. .-.+|.|.|..|.||||+++++.+.+...-...+.+++..+.. +..+ .++.
T Consensus 62 lg~~~~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~~~-----~q~~ 129 (264)
T cd01129 62 LGLKPENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IPGI-----NQVQ 129 (264)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CCCc-----eEEE
Confidence 35444333 34444432 2357999999999999999998877654323445554332221 1100 0100
Q ss_pred cCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHHHHHH
Q 045202 101 NDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFL 141 (887)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l 141 (887)
... .......+.++..++...=.|+++++.+.+.....
T Consensus 130 v~~---~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~ 167 (264)
T cd01129 130 VNE---KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIA 167 (264)
T ss_pred eCC---cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHH
Confidence 000 00112356778888888899999999988765443
No 442
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.40 E-value=0.052 Score=30.53 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=5.5
Q ss_pred CCcEEEcCCCCCcccc
Q 045202 604 SVRELHLNGNNFERIP 619 (887)
Q Consensus 604 ~L~~L~L~~n~l~~lp 619 (887)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 443
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.40 E-value=0.14 Score=53.25 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=36.0
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceE
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGS 73 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 73 (887)
-.++...+.....+..+|||.|.||+||+||..++-.++.++-..+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rV 82 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRV 82 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEE
Confidence 3566777776667888999999999999999999888765554433
No 444
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.39 E-value=0.085 Score=59.08 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=37.6
Q ss_pred CCcccccccHHHHHHhHhc-------C-----C--CCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 19 NDLVGVELPMKEIESLLRS-------G-----S--TNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~-------~-----~--~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
+.+||.+..++.+...+.. . + ..-.-+.++|.+|+|||++|+.+.......|
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 4689999988887655421 0 0 0125689999999999999999988764444
No 445
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.37 E-value=0.097 Score=52.36 Aligned_cols=26 Identities=38% Similarity=0.700 Sum_probs=21.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.|+|+|-||+||||+|..+..++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977665444
No 446
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.87 Score=53.23 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=91.9
Q ss_pred CcccccccHHHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccce---EEEccccHHHHhcCCHH
Q 045202 20 DLVGVELPMKEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAG---SYFANNVREAEETGRLG 89 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~s~~~~~~ 89 (887)
...+++..+-++...+.... .-..++.++|.+|+||||++++++.+..-|+-. .-.+ ..+....-.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~----~~s~~~~et 477 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELV----AESASHTET 477 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHh----hcccchhHH
Confidence 34566777777777776532 234688999999999999999999887665321 1111 111111111
Q ss_pred HHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCC-------CH------HHHHHHhc-C-CCCCCCCcEE
Q 045202 90 DLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVN-------HP------RQIEFLVG-R-LDLFASGSRI 154 (887)
Q Consensus 90 ~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~-------~~------~~~~~l~~-~-~~~~~~gsrI 154 (887)
.++ ....+.-+.....|.+-+++ .. ..++.+.. . +....++--+
T Consensus 478 kl~---------------------~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~iv 536 (953)
T KOG0736|consen 478 KLQ---------------------AIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIV 536 (953)
T ss_pred HHH---------------------HHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEE
Confidence 111 11111122234444444432 11 11222332 1 2222334444
Q ss_pred EEEe-CChhhhhhcC--CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 155 IITT-RDRQLLTNCG--VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 155 iiTT-R~~~v~~~~~--~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
|.|| +.+++..... .-+.++++.+++++-.++|++++- ..+ -+...--+++++++.|.-.+
T Consensus 537 v~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~--~~~-~n~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 537 VATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLN--HLP-LNQDVNLKQLARKTSGFSFG 600 (953)
T ss_pred EEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHh--ccc-cchHHHHHHHHHhcCCCCHH
Confidence 4443 3444433332 246889999999999999999882 222 23334456777888776544
No 447
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.34 E-value=0.33 Score=50.93 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 27 QVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998763
No 448
>PLN02348 phosphoribulokinase
Probab=93.34 E-value=0.11 Score=56.77 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=26.1
Q ss_pred CCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 39 STNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 39 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.+...+|||.|.+|.||||+|+.+.+.+..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999987654
No 449
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.33 E-value=0.095 Score=56.24 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=43.3
Q ss_pred CCCcccccccHHHHHHhHhcCC----CCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 18 TNDLVGVELPMKEIESLLRSGS----TNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~----~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.+.++|+++.++++++.+...+ ..-+++.+.|+.|.||||||+.+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 4589999999999999998633 456899999999999999999987755444
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.31 E-value=0.45 Score=45.98 Aligned_cols=68 Identities=28% Similarity=0.345 Sum_probs=41.1
Q ss_pred CCcccc-hHHHHHhhCCceEEEEEecCCC----HHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecC
Q 045202 107 SFPNIG-LNFQSKRLTRKKVLIVFYDVNH----PRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMK 176 (887)
Q Consensus 107 ~~~~~~-~~~~~~~l~~kk~LiVlDdv~~----~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~ 176 (887)
+++.+. .+.+.++..++ =+-|||.-.. ..|++.+..-..-...|+.|||.|-++-+...-+ ..+|+..
T Consensus 130 ~SHGEsf~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~-A~I~~~~ 202 (233)
T COG3910 130 MSHGESFLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPG-AEIYEIS 202 (233)
T ss_pred hccchHHHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCC-cEEEEEe
Confidence 444444 34455555554 4567898753 4566665544444557899999999987765443 2455543
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.30 E-value=0.066 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.015 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999983
No 452
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.30 E-value=0.52 Score=52.78 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=27.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..+|.++|..|+||||.|..+...++.+-..++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 57999999999999999998887665543334444
No 453
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.29 E-value=0.086 Score=52.32 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.|+|.|+|+.|+|||||++++..+...+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 37899999999999999999999888888655444
No 454
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.25 E-value=0.58 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+..|+|++|+||||||..+.-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999877543
No 455
>PRK13975 thymidylate kinase; Provisional
Probab=93.24 E-value=0.077 Score=53.28 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.+|.|.|+.|+||||+|+.+.+++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998764
No 456
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.23 E-value=0.073 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|.|+|+.|+||||+|+.+.++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588899999999999999998764
No 457
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.22 E-value=0.21 Score=52.75 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=34.5
Q ss_pred HhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 35 LRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 35 L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
|..+-+.-+++.|+|.+|+|||++|.++..+...+.+.+.|+
T Consensus 16 l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyv 57 (260)
T COG0467 16 LGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYV 57 (260)
T ss_pred hcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 333335568999999999999999999888777778888898
No 458
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.20 E-value=0.31 Score=51.11 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+++|+|..|.|||||++.+....
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 31 QITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999997643
No 459
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.20 E-value=0.15 Score=53.64 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.4
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.++.+|.|.|.+|.|||||+..+.+.+.......+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~ 138 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIE 138 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEEC
Confidence 5688999999999999999999999877665444443
No 460
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.18 E-value=0.76 Score=50.66 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=32.5
Q ss_pred CcccccccHHH-HHHhHhc---CC--------CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 20 DLVGVELPMKE-IESLLRS---GS--------TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 20 ~~vGr~~~~~~-l~~~L~~---~~--------~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+-+.+|.++++ |++-|.. +. .--|-=.++|++|.|||++..|+++.+.
T Consensus 201 ~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 201 ETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred cccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC
Confidence 45667777654 5555542 11 1234556899999999999999988654
No 461
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.14 E-value=0.15 Score=50.68 Aligned_cols=32 Identities=22% Similarity=0.136 Sum_probs=25.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+.|.|.+|+|||++|..+.......-..++|+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~ 33 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYV 33 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67899999999999998876554444556677
No 462
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.14 E-value=0.81 Score=45.65 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHH
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~ 66 (887)
|.|.|++|+||||+|+.+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998763
No 463
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.13 E-value=0.11 Score=51.68 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=32.1
Q ss_pred CCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHH
Q 045202 18 TNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
..+++|.+..+..++-.... -+-+.++|.+|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 45788988777777665552 24689999999999999999876
No 464
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.13 E-value=0.082 Score=53.28 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.++||+|.+|.||||||+.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 465
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.12 E-value=0.25 Score=51.27 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=33.6
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+.|-++|..+=..-.++.|.|.+|+|||++|..+..+...+-+..+|+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyv 55 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYV 55 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 344455554444557899999999999999988655433445667777
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.11 E-value=0.065 Score=53.00 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998753
No 467
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.07 E-value=0.086 Score=52.76 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..+|.|.|.+|+||||+|+.+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 468
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.06 E-value=0.08 Score=49.73 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
+|.|-|.+|.||||+|+.+.+...-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68999999999999999999876533
No 469
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.05 E-value=0.11 Score=60.00 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=45.9
Q ss_pred CCCCCCcccccccHHHHHHhHhcC---CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG---STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
|...++++--...++++..||... ....+++.+.|++|+||||.++.+.+++. |+..-|..
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 444456666667788999999852 23457999999999999999999998763 55566753
No 470
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.05 E-value=0.13 Score=55.63 Aligned_cols=41 Identities=27% Similarity=0.405 Sum_probs=31.1
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.++.+.+........+|+|.|.+|+|||||+..+...+..+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 44555554334567899999999999999999988876544
No 471
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.05 E-value=0.099 Score=52.74 Aligned_cols=117 Identities=17% Similarity=0.076 Sum_probs=57.8
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHH-HhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCC---cccchHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNK-ISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSF---PNIGLNFQ 116 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~---~~~~~~~~ 116 (887)
..++++|.|..|.||||+.+.+.-- +..+. .+++.. .... ..+.+.++..+...+..... .......+
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~--G~~vpa---~~~~---l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~ 99 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQI--GCFVPA---EYAT---LPIFNRLLSRLSNDDSMERNLSTFASEMSET 99 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHc--CCCcch---hhcC---ccChhheeEecCCccccchhhhHHHHHHHHH
Confidence 3478999999999999999988652 21111 122210 0000 01222222222221111100 00111112
Q ss_pred HHh--hCCceEEEEEecCCC---HHH----HHHHhcCCCCCCCCcEEEEEeCChhhhhhc
Q 045202 117 SKR--LTRKKVLIVFYDVNH---PRQ----IEFLVGRLDLFASGSRIIITTRDRQLLTNC 167 (887)
Q Consensus 117 ~~~--l~~kk~LiVlDdv~~---~~~----~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 167 (887)
... +..++-|+++|.... ..+ ...+...+. ..|+.+|+||-+..++...
T Consensus 100 ~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 100 AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHh
Confidence 221 235678999999732 221 112222222 2488999999999888765
No 472
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.03 E-value=0.14 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.-+|.|.|.+|+||||+|+.+.+++
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 473
>PRK04182 cytidylate kinase; Provisional
Probab=93.02 E-value=0.078 Score=52.30 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|+|.|+.|.||||+|+.+.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988753
No 474
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.94 E-value=0.71 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEcCCCcchHHHHHHHHHHHh
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+.+.|++|.||||+|+.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998765
No 475
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=92.94 E-value=0.35 Score=55.88 Aligned_cols=48 Identities=27% Similarity=0.302 Sum_probs=37.5
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..++|....+.++...+..-......+.|.|..|+|||++|++++..-
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 458898888888877765433334567899999999999999998753
No 476
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.93 E-value=0.13 Score=56.24 Aligned_cols=56 Identities=21% Similarity=0.137 Sum_probs=42.8
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
....++|.+..+..+...+..+ +-+.+.|.+|+|||+||+.+...+...|-..-+-
T Consensus 22 ~~~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 22 LEKVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred cCCeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 3445899888887776666543 3488999999999999999999888666655444
No 477
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.92 E-value=0.27 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+++|.|..|.|||||.+.+....
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999997643
No 478
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.91 E-value=0.091 Score=53.23 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=24.1
Q ss_pred cCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 37 SGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 37 ~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+....+.|.|+|.+|+|||||++.+.+.
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456688999999999999999998754
No 479
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.88 E-value=0.12 Score=54.61 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
++|+|+|.+|+|||||+..+...++.+. .++-+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 4799999999999999999999888776 45555
No 480
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.87 E-value=0.1 Score=56.22 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=25.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
|++.+.|-||+||||+|-+..-....+-..+.-+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 6899999999999999988776655543334443
No 481
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.84 E-value=0.43 Score=49.77 Aligned_cols=158 Identities=18% Similarity=0.112 Sum_probs=92.0
Q ss_pred CCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHH
Q 045202 16 SETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQL 95 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~i 95 (887)
...++++|-... .++..++......-+.+.|+|+.|+|||+-++.+++.. ...|+. +.++.+....++..+
T Consensus 69 ~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~-----p~~~l~---~~~p~~~a~~~i~~i 139 (297)
T COG2842 69 KLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN-----PNALLI---EADPSYTALVLILII 139 (297)
T ss_pred cccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC-----ccceee---cCChhhHHHHHHHHH
Confidence 345678877543 33444444333333588999999999999999987742 234542 445556666677766
Q ss_pred HHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceE
Q 045202 96 LSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKY 173 (887)
Q Consensus 96 l~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~ 173 (887)
............ ..+......++++..=+|+.|..+.. +.++.+....+..+-|-..+=+-| ..
T Consensus 140 ~~~~~~~~~~~~--~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~pr------------L~ 205 (297)
T COG2842 140 CAAAFGATDGTI--NDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPR------------LF 205 (297)
T ss_pred HHHHhcccchhH--HHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChH------------HH
Confidence 666655443332 23345556666777788888988653 446665554443333322111111 11
Q ss_pred ecCCCChHHHHHHHHHhhcCCCC
Q 045202 174 QMKELVHADALKLFSRHAFGGDH 196 (887)
Q Consensus 174 ~v~~L~~~~a~~Lf~~~af~~~~ 196 (887)
.+-.=+.++..++|.+..|+...
T Consensus 206 ~~l~~~~~~~~rl~srv~v~~~~ 228 (297)
T COG2842 206 KVLRRPEDELSRLYSRVRVGKLL 228 (297)
T ss_pred hccccchHHHHHHHHHhhhHhhh
Confidence 12222456778888888877543
No 482
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.83 E-value=0.15 Score=48.78 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=29.8
Q ss_pred cccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 25 ELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 25 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
...+++|.++|. + +++.++|..|+|||||...+...
T Consensus 23 ~~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 355788888886 3 68999999999999999998764
No 483
>PHA02244 ATPase-like protein
Probab=92.82 E-value=0.1 Score=56.65 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=31.9
Q ss_pred CcccccccHH----HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 20 DLVGVELPMK----EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 20 ~~vGr~~~~~----~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.++|....+. .+..++..+ .-|.|+|.+|+|||++|+++.......|
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~pf 147 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLDF 147 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4566555553 344444422 2478899999999999999998765444
No 484
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.81 E-value=0.13 Score=52.63 Aligned_cols=118 Identities=12% Similarity=-0.001 Sum_probs=59.2
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHH-HHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCC---cccchHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFN-KISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSF---PNIGLNFQ 116 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~-~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~---~~~~~~~~ 116 (887)
.-+++.|.|..|.||||+.+.+.- .+..+-....|-..++ .....+|+..+...++.... ...-...+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~--------~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~ 101 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSAT--------LSIFDSVLTRMGASDSIQHGMSTFMVELSET 101 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceE--------EeccceEEEEecCccccccccchHHHHHHHH
Confidence 346789999999999999999876 4433333333331110 00111111112111111111 00111222
Q ss_pred HHhh--CCceEEEEEecCCC----HHH---HHHHhcCCCCCCCCcEEEEEeCChhhhhhc
Q 045202 117 SKRL--TRKKVLIVFYDVNH----PRQ---IEFLVGRLDLFASGSRIIITTRDRQLLTNC 167 (887)
Q Consensus 117 ~~~l--~~kk~LiVlDdv~~----~~~---~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 167 (887)
++.+ ..++-|+++|+... .+. ...+...+.. ..++.+|++|.+..++...
T Consensus 102 ~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 102 SHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 2222 34689999999731 111 1122222221 1578999999998886543
No 485
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.80 E-value=0.046 Score=54.39 Aligned_cols=21 Identities=24% Similarity=-0.001 Sum_probs=18.7
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~ 64 (887)
++.|.|.-|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 477999999999999999873
No 486
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.79 E-value=0.16 Score=58.70 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
..++|....+.++...+..-...-..|.|+|.+|+|||++|++++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 57999999888888777644444456889999999999999999885
No 487
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.78 E-value=0.084 Score=53.46 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
-.+|+|+|+.|+||||||+.+....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998864
No 488
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.77 E-value=0.41 Score=58.45 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
..++|+|..|.|||||++.+..
T Consensus 508 e~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 508 EVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 489
>PRK14530 adenylate kinase; Provisional
Probab=92.76 E-value=0.091 Score=53.67 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|.|+|++|+||||+|+.+..+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 490
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.72 E-value=0.23 Score=52.12 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=35.5
Q ss_pred HHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 32 ESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 32 ~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
..+|-.+-+.-+++=|+|+.|.||||+|-+++-.....-...+|++
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 3344423345679999999999999999998887777777889994
No 491
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.71 E-value=0.094 Score=55.66 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988766544
No 492
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.70 E-value=0.14 Score=44.31 Aligned_cols=25 Identities=32% Similarity=0.621 Sum_probs=22.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
++.+.|.+|+||||+|..+...+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999987765
No 493
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.70 E-value=0.46 Score=56.06 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.++..|.|.+|+||||+++.+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 368899999999999999998886543
No 494
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.69 E-value=0.54 Score=49.45 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=26.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..+++++|.+|+||||+++.+......+-....++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i 109 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 109 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 36899999999999999999877655433334444
No 495
>PRK15453 phosphoribulokinase; Provisional
Probab=92.69 E-value=0.15 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
...+|+|.|-+|.||||+|+++.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987654
No 496
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.68 E-value=0.075 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.++.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999997753
No 497
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.67 E-value=0.2 Score=51.72 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 31 IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 31 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+.+.+..+-..-.++.|.|..|+||||+|..+......+-...+++
T Consensus 13 ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi 58 (230)
T PRK08533 13 LHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYV 58 (230)
T ss_pred eehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3333433223445899999999999999866555442233445666
No 498
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.65 E-value=0.42 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..++.++|.+|+||||.|..+.....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999988887654
No 499
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.64 E-value=0.097 Score=48.34 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
=|.|.|.+|+||||+|.++...
T Consensus 9 NILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHH
Confidence 3889999999999999999864
No 500
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.63 E-value=0.068 Score=56.80 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=71.1
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLST 98 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~ 98 (887)
++++-.....+++.++|...-..-+.|.|.|..|.||||+++++...+...-...+-+++..+..-+.. ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~---------~~ 174 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP---------NQ 174 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS---------SE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc---------ce
Confidence 445444445566666666432234789999999999999999998876655223344433222211000 00
Q ss_pred HhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEE-EEEeCC
Q 045202 99 LLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRI-IITTRD 160 (887)
Q Consensus 99 l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrI-iiTTR~ 160 (887)
..-... .......+.++..|+...=.|+++.+.+.+.++.+.. ...|..+ +-|...
T Consensus 175 ~~~~~~--~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a----~~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 175 IQIQTR--RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQA----ANTGHLGSLTTLHA 231 (270)
T ss_dssp EEEEEE--TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHH----HHTT-EEEEEEEE-
T ss_pred EEEEee--cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHh----hccCCceeeeeeec
Confidence 000000 1223446677888888888999999998887776432 2357777 555543
Done!