Query 045202
Match_columns 887
No_of_seqs 749 out of 5552
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 19:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-37 7.3E-42 378.1 18.4 370 345-717 247-695 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.9E-36 2.7E-40 364.2 16.7 367 345-719 178-555 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.9E-34 1E-38 342.0 26.5 386 317-712 57-533 (606)
4 2a5y_B CED-4; apoptosis; HET: 100.0 3.4E-35 1.2E-39 343.2 17.6 257 22-292 131-473 (549)
5 3t6q_A CD180 antigen; protein- 100.0 2.3E-33 8E-38 334.2 29.0 387 317-715 105-560 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-33 5.2E-38 335.8 25.1 381 317-715 56-534 (606)
7 4eco_A Uncharacterized protein 100.0 1.2E-34 4.1E-39 345.7 15.4 328 376-714 192-578 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2E-33 6.8E-38 334.8 25.5 384 316-716 31-511 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 4.9E-34 1.7E-38 346.1 16.7 330 377-714 435-818 (876)
10 4eco_A Uncharacterized protein 100.0 5.8E-33 2E-37 331.2 23.3 347 338-695 198-604 (636)
11 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-33 1.6E-37 327.6 20.9 391 316-715 25-510 (549)
12 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-31 4.9E-36 323.2 32.4 188 524-715 397-622 (680)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-32 9.9E-37 336.2 26.0 386 317-715 24-517 (844)
14 4ecn_A Leucine-rich repeat pro 100.0 1.7E-32 6E-37 332.5 23.3 363 338-712 440-861 (876)
15 2z63_A TOLL-like receptor 4, v 100.0 1.8E-32 6.1E-37 324.1 21.5 246 461-718 282-534 (570)
16 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-31 4.1E-36 323.9 27.5 56 462-517 249-305 (680)
17 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-32 1E-36 336.1 22.4 386 317-716 48-540 (844)
18 3v47_A TOLL-like receptor 5B a 100.0 2.8E-32 9.7E-37 313.0 19.6 362 348-716 13-409 (455)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.7E-32 3.3E-36 314.0 22.0 140 320-473 3-150 (520)
20 2z63_A TOLL-like receptor 4, v 100.0 8.4E-32 2.9E-36 318.3 19.8 379 317-712 28-480 (570)
21 1o6v_A Internalin A; bacterial 100.0 1.3E-30 4.6E-35 299.7 29.3 342 345-715 46-388 (466)
22 2z7x_B TOLL-like receptor 1, v 100.0 2E-30 6.8E-35 302.9 27.9 377 316-713 20-479 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.7E-30 2.3E-34 301.1 29.2 141 320-473 34-181 (562)
24 1o6v_A Internalin A; bacterial 100.0 2.3E-29 8E-34 289.3 30.5 344 317-694 46-391 (466)
25 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-30 1.2E-34 303.0 23.0 358 317-695 50-514 (549)
26 3v47_A TOLL-like receptor 5B a 100.0 1.9E-29 6.4E-34 289.5 25.0 344 345-695 30-412 (455)
27 4fmz_A Internalin; leucine ric 100.0 1.7E-28 5.9E-33 270.9 31.4 301 345-667 44-346 (347)
28 2id5_A Lingo-1, leucine rich r 100.0 1.6E-28 5.6E-33 283.4 27.6 316 348-693 14-335 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 1.4E-28 4.7E-33 280.7 25.6 347 317-715 34-409 (454)
30 4fmz_A Internalin; leucine ric 100.0 3.8E-28 1.3E-32 268.1 28.1 303 365-690 42-345 (347)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.5E-28 1.2E-32 286.5 29.5 360 316-695 51-514 (562)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-27 4E-32 273.2 31.2 339 345-754 42-395 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 4.6E-28 1.6E-32 279.7 27.5 315 370-715 14-333 (477)
34 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-28 5.4E-33 294.0 24.5 389 316-715 51-580 (635)
35 1jl5_A Outer protein YOPM; leu 100.0 4.6E-29 1.6E-33 284.6 18.6 342 318-715 12-370 (454)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-27 5.9E-32 271.8 29.4 336 317-714 42-386 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 1.8E-27 6.3E-32 267.0 25.1 305 365-693 43-354 (390)
38 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-27 4E-32 286.4 22.1 371 337-715 45-555 (635)
39 3o6n_A APL1; leucine-rich repe 100.0 5.7E-27 2E-31 263.0 25.9 304 344-668 44-353 (390)
40 3oja_B Anopheles plasmodium-re 100.0 4.5E-27 1.5E-31 278.7 25.3 306 364-693 48-360 (597)
41 3sfz_A APAF-1, apoptotic pepti 99.9 2.2E-28 7.4E-33 315.9 14.5 262 14-290 119-452 (1249)
42 3oja_B Anopheles plasmodium-re 99.9 1.1E-26 3.7E-31 275.4 25.8 304 345-669 51-360 (597)
43 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-26 7.8E-31 252.1 25.4 286 368-689 34-331 (332)
44 1xku_A Decorin; proteoglycan, 99.9 7.3E-26 2.5E-30 247.9 27.0 288 367-688 31-329 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 4.9E-26 1.7E-30 249.5 23.6 286 345-664 33-330 (332)
46 1vt4_I APAF-1 related killer D 99.9 9.6E-28 3.3E-32 282.9 10.4 218 19-257 128-385 (1221)
47 1xku_A Decorin; proteoglycan, 99.9 5.8E-25 2E-29 240.7 28.1 282 345-636 31-329 (330)
48 1ogq_A PGIP-2, polygalacturona 99.9 7.2E-26 2.5E-30 245.7 18.0 246 416-668 50-306 (313)
49 1z6t_A APAF-1, apoptotic prote 99.9 1.6E-26 5.4E-31 273.9 12.5 228 14-257 119-393 (591)
50 1ogq_A PGIP-2, polygalacturona 99.9 3E-26 1E-30 248.7 12.0 244 462-713 51-302 (313)
51 4fcg_A Uncharacterized protein 99.9 1.7E-24 5.8E-29 236.3 21.8 230 415-667 80-314 (328)
52 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-23 4.6E-28 246.7 29.8 257 346-639 41-297 (622)
53 4fcg_A Uncharacterized protein 99.9 1.7E-24 5.8E-29 236.3 20.2 223 463-693 83-316 (328)
54 3g06_A SSPH2 (leucine-rich rep 99.9 6.4E-23 2.2E-27 241.0 30.1 268 368-702 41-308 (622)
55 3zyj_A Leucine-rich repeat-con 99.9 1.5E-23 5.1E-28 239.1 23.0 247 440-692 44-293 (440)
56 1z7x_W Ribonuclease inhibitor; 99.9 8.2E-27 2.8E-31 267.9 -5.2 347 346-693 4-413 (461)
57 3zyi_A Leucine-rich repeat-con 99.9 2.3E-23 7.9E-28 238.3 23.0 247 441-693 56-305 (452)
58 2z80_A TOLL-like receptor 2, v 99.9 5.6E-24 1.9E-28 235.2 16.8 268 345-637 31-312 (353)
59 1z7x_W Ribonuclease inhibitor; 99.9 3.7E-27 1.2E-31 270.9 -9.3 348 366-714 2-410 (461)
60 2z66_A Variable lymphocyte rec 99.9 1E-23 3.4E-28 228.3 17.2 245 442-693 10-263 (306)
61 2z80_A TOLL-like receptor 2, v 99.9 1.5E-23 5.3E-28 231.7 18.3 256 438-695 30-318 (353)
62 2z66_A Variable lymphocyte rec 99.9 3.6E-24 1.2E-28 231.8 10.5 247 463-715 9-261 (306)
63 3o53_A Protein LRIM1, AGAP0063 99.9 4.2E-24 1.4E-28 232.3 9.1 261 369-640 12-276 (317)
64 1ozn_A Reticulon 4 receptor; N 99.9 7.4E-23 2.5E-27 219.0 17.6 221 442-668 14-239 (285)
65 3zyj_A Leucine-rich repeat-con 99.9 3.3E-23 1.1E-27 236.2 15.0 246 462-715 44-292 (440)
66 3zyi_A Leucine-rich repeat-con 99.9 3.5E-23 1.2E-27 236.8 15.2 246 462-715 55-303 (452)
67 1wwl_A Monocyte differentiatio 99.9 7.1E-24 2.4E-28 230.0 8.1 174 461-637 121-307 (312)
68 1wwl_A Monocyte differentiatio 99.9 5.1E-24 1.7E-28 231.1 6.6 244 438-693 42-311 (312)
69 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-22 1.6E-26 212.8 19.7 226 463-695 13-242 (285)
70 3o53_A Protein LRIM1, AGAP0063 99.9 1E-22 3.5E-27 221.4 11.0 236 461-713 34-273 (317)
71 3oja_A Leucine-rich immune mol 99.9 2.6E-22 8.8E-27 231.1 15.0 235 391-636 35-272 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 1.3E-21 4.4E-26 208.3 18.4 212 452-667 19-237 (276)
73 3ogk_B Coronatine-insensitive 99.9 3.1E-24 1E-28 254.7 -6.5 364 345-714 112-525 (592)
74 3oja_A Leucine-rich immune mol 99.9 7.4E-22 2.5E-26 227.2 11.0 234 414-662 32-270 (487)
75 2z62_A TOLL-like receptor 4, v 99.8 2.9E-20 9.9E-25 197.8 19.1 223 465-695 11-241 (276)
76 2o6q_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 192.8 21.6 197 463-666 18-217 (270)
77 2o6q_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 191.2 21.9 197 440-638 17-217 (270)
78 1p9a_G Platelet glycoprotein I 99.8 2.4E-19 8.2E-24 191.8 20.2 175 485-667 32-208 (290)
79 1p9a_G Platelet glycoprotein I 99.8 2.4E-19 8.3E-24 191.8 19.5 201 480-691 6-208 (290)
80 3ogk_B Coronatine-insensitive 99.8 2.9E-22 1E-26 237.6 -3.6 343 346-693 139-528 (592)
81 1h6u_A Internalin H; cell adhe 99.8 2.4E-19 8.3E-24 193.7 19.5 191 462-669 42-232 (308)
82 4glp_A Monocyte differentiatio 99.8 4.4E-20 1.5E-24 199.9 13.0 201 483-692 90-308 (310)
83 2xwt_C Thyrotropin receptor; s 99.8 1.2E-19 4E-24 188.6 15.5 183 452-637 23-216 (239)
84 2ast_B S-phase kinase-associat 99.8 1.4E-20 4.7E-25 206.4 8.4 229 461-696 70-311 (336)
85 1h6u_A Internalin H; cell adhe 99.8 5.6E-19 1.9E-23 190.8 19.0 166 461-637 63-228 (308)
86 2p1m_B Transport inhibitor res 99.8 9.7E-22 3.3E-26 233.2 -3.9 360 345-712 105-516 (594)
87 3rfs_A Internalin B, repeat mo 99.8 4.8E-19 1.6E-23 187.8 17.1 199 462-675 42-243 (272)
88 2xwt_C Thyrotropin receptor; s 99.8 2.2E-19 7.6E-24 186.5 14.2 207 470-688 20-236 (239)
89 3rfs_A Internalin B, repeat mo 99.8 6.7E-19 2.3E-23 186.7 18.1 179 461-647 63-243 (272)
90 4glp_A Monocyte differentiatio 99.8 1.6E-19 5.6E-24 195.4 12.6 154 506-667 143-307 (310)
91 2ast_B S-phase kinase-associat 99.8 4.4E-20 1.5E-24 202.4 6.2 250 391-675 48-314 (336)
92 2p1m_B Transport inhibitor res 99.8 7.3E-22 2.5E-26 234.3 -9.8 364 317-691 105-519 (594)
93 3m19_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 178.6 19.1 173 462-637 15-190 (251)
94 2ca6_A RAN GTPase-activating p 99.8 6.3E-20 2.2E-24 205.3 5.8 218 478-695 54-320 (386)
95 2ca6_A RAN GTPase-activating p 99.8 5.6E-20 1.9E-24 205.7 3.9 247 411-671 27-320 (386)
96 3goz_A Leucine-rich repeat-con 99.8 1.4E-19 4.9E-24 200.4 6.9 256 421-698 3-304 (362)
97 4ay9_X Follicle-stimulating ho 99.8 2.9E-18 1E-22 188.8 17.0 236 442-687 12-255 (350)
98 4ay9_X Follicle-stimulating ho 99.8 7.3E-18 2.5E-22 185.6 20.0 236 348-635 12-255 (350)
99 3cvr_A Invasion plasmid antige 99.8 8.6E-18 2.9E-22 194.9 19.4 184 417-623 60-251 (571)
100 3cvr_A Invasion plasmid antige 99.8 6.9E-18 2.4E-22 195.7 17.6 177 440-639 60-243 (571)
101 3m19_A Variable lymphocyte rec 99.8 2E-17 6.8E-22 173.1 19.3 177 439-617 14-193 (251)
102 3goz_A Leucine-rich repeat-con 99.7 1.9E-19 6.5E-24 199.4 0.2 251 465-715 2-297 (362)
103 1h6t_A Internalin B; cell adhe 99.7 5.5E-17 1.9E-21 173.6 18.7 166 461-637 46-211 (291)
104 1h6t_A Internalin B; cell adhe 99.7 1.1E-17 3.9E-22 178.9 11.6 196 463-675 26-221 (291)
105 1m9s_A Internalin B; cell inva 99.7 3E-17 1E-21 192.5 13.1 190 438-639 20-210 (605)
106 1m9s_A Internalin B; cell inva 99.7 1.4E-16 4.8E-21 186.9 17.8 173 437-620 41-214 (605)
107 2o6s_A Variable lymphocyte rec 99.7 3.9E-16 1.3E-20 158.2 15.1 171 465-644 11-183 (208)
108 2o6s_A Variable lymphocyte rec 99.7 6.3E-16 2.1E-20 156.7 16.4 168 452-626 19-189 (208)
109 1xeu_A Internalin C; cellular 99.7 1.5E-16 5.2E-21 167.4 11.0 165 461-637 19-183 (263)
110 2xot_A Amphoterin-induced prot 99.7 8.2E-16 2.8E-20 170.0 16.1 171 464-637 21-200 (361)
111 1dce_A Protein (RAB geranylger 99.7 1.3E-18 4.3E-23 203.1 -6.9 172 461-637 349-544 (567)
112 4ezg_A Putative uncharacterize 99.6 8.1E-16 2.8E-20 154.4 13.9 146 463-637 46-192 (197)
113 4ezg_A Putative uncharacterize 99.6 2.3E-16 7.8E-21 158.4 9.5 153 505-668 41-195 (197)
114 2v9t_B SLIT homolog 2 protein 99.6 2.2E-15 7.4E-20 154.0 15.7 150 464-616 14-165 (220)
115 3e6j_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 153.4 16.9 150 463-616 21-172 (229)
116 4b8c_D Glucose-repressible alc 99.6 2.7E-16 9.1E-21 189.3 8.0 142 499-643 215-358 (727)
117 2xot_A Amphoterin-induced prot 99.6 1.9E-15 6.6E-20 167.0 13.5 173 442-616 21-202 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.6 5.6E-15 1.9E-19 150.9 15.6 149 465-616 15-166 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.6 4.5E-15 1.6E-19 151.6 13.8 155 535-695 14-170 (220)
120 1dce_A Protein (RAB geranylger 99.6 1.7E-17 5.7E-22 193.6 -5.8 152 481-637 346-519 (567)
121 3e6j_A Variable lymphocyte rec 99.6 2.4E-14 8.2E-19 147.3 16.7 152 441-594 21-173 (229)
122 1xeu_A Internalin C; cellular 99.6 1.3E-14 4.5E-19 152.5 14.6 171 438-620 18-189 (263)
123 4b8c_D Glucose-repressible alc 99.6 7.9E-16 2.7E-20 185.2 5.5 189 461-674 173-361 (727)
124 2v9t_B SLIT homolog 2 protein 99.6 2.9E-14 1E-18 145.6 15.3 150 442-593 14-165 (220)
125 2ell_A Acidic leucine-rich nuc 99.6 1E-14 3.5E-19 142.2 11.4 128 484-637 24-158 (168)
126 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.4E-19 140.4 11.8 134 531-671 23-164 (168)
127 2je0_A Acidic leucine-rich nuc 99.5 4.1E-14 1.4E-18 134.9 9.9 125 508-634 17-148 (149)
128 2je0_A Acidic leucine-rich nuc 99.5 5.3E-14 1.8E-18 134.1 7.8 126 484-611 17-148 (149)
129 3sb4_A Hypothetical leucine ri 99.5 4.8E-15 1.6E-19 161.6 0.4 215 483-704 100-323 (329)
130 1w5s_A Origin recognition comp 99.4 7.6E-13 2.6E-17 149.0 14.5 201 16-223 19-266 (412)
131 1a9n_A U2A', U2A'; complex (nu 99.4 4.3E-13 1.5E-17 131.7 10.7 129 506-637 17-151 (176)
132 2wfh_A SLIT homolog 2 protein 99.4 1.2E-12 4.2E-17 130.5 13.9 125 442-567 13-138 (193)
133 2qen_A Walker-type ATPase; unk 99.4 7.4E-13 2.5E-17 145.4 13.0 202 12-226 5-249 (350)
134 1a9n_A U2A', U2A'; complex (nu 99.4 4.3E-13 1.5E-17 131.7 9.5 134 528-665 15-151 (176)
135 1w8a_A SLIT protein; signaling 99.4 1.2E-12 4.2E-17 130.4 12.6 113 453-565 21-136 (192)
136 1w8a_A SLIT protein; signaling 99.4 5.1E-13 1.7E-17 133.2 9.6 127 464-616 11-139 (192)
137 2fna_A Conserved hypothetical 99.4 1.9E-12 6.4E-17 142.6 13.0 200 12-226 6-253 (357)
138 2wfh_A SLIT homolog 2 protein 99.4 3.7E-12 1.3E-16 126.9 13.7 126 464-616 13-139 (193)
139 1ds9_A Outer arm dynein; leuci 99.4 1.3E-14 4.4E-19 145.7 -4.3 130 482-616 16-153 (198)
140 3sb4_A Hypothetical leucine ri 99.4 8.1E-13 2.8E-17 143.9 9.4 214 461-684 101-327 (329)
141 1ds9_A Outer arm dynein; leuci 99.4 1E-14 3.5E-19 146.4 -6.2 158 505-668 15-186 (198)
142 2o6r_A Variable lymphocyte rec 99.3 8.2E-12 2.8E-16 122.7 13.9 127 464-616 10-137 (177)
143 2qby_B CDC6 homolog 3, cell di 99.3 1E-10 3.6E-15 130.1 22.2 195 18-223 19-246 (384)
144 2o6r_A Variable lymphocyte rec 99.3 2.3E-11 7.8E-16 119.4 14.1 127 441-568 9-137 (177)
145 4fdw_A Leucine rich hypothetic 99.2 1.5E-10 5.3E-15 128.8 19.3 212 461-686 157-378 (401)
146 4fdw_A Leucine rich hypothetic 99.2 5.8E-11 2E-15 132.2 15.1 222 461-698 135-365 (401)
147 2v1u_A Cell division control p 99.2 1.3E-10 4.5E-15 129.3 18.0 200 17-223 17-250 (387)
148 2qby_A CDC6 homolog 1, cell di 99.2 4.6E-11 1.6E-15 133.0 13.4 203 16-222 17-244 (386)
149 1njg_A DNA polymerase III subu 99.2 4.5E-11 1.5E-15 123.7 12.2 198 15-224 19-229 (250)
150 3g39_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 112.4 11.5 103 463-567 11-114 (170)
151 2r9u_A Variable lymphocyte rec 99.1 1.6E-10 5.6E-15 112.8 11.5 101 464-566 15-116 (174)
152 3g39_A Variable lymphocyte rec 99.1 2.6E-10 8.8E-15 111.0 11.6 109 581-695 10-119 (170)
153 1fnn_A CDC6P, cell division co 99.1 1E-09 3.5E-14 122.2 17.3 203 17-223 15-247 (389)
154 2chg_A Replication factor C sm 99.1 5.9E-10 2E-14 113.4 13.6 189 14-223 12-204 (226)
155 2r9u_A Variable lymphocyte rec 99.1 6.5E-10 2.2E-14 108.6 11.2 109 442-551 15-124 (174)
156 3un9_A NLR family member X1; l 99.0 1.1E-11 3.9E-16 136.6 -1.6 155 483-637 71-250 (372)
157 4fs7_A Uncharacterized protein 99.0 1.5E-09 5.2E-14 121.1 13.1 217 480-711 158-375 (394)
158 4fs7_A Uncharacterized protein 99.0 4.3E-09 1.5E-13 117.4 15.0 80 599-685 293-373 (394)
159 3un9_A NLR family member X1; l 98.9 8.9E-11 3E-15 129.4 -0.5 169 507-676 71-261 (372)
160 1sxj_B Activator 1 37 kDa subu 98.9 7E-09 2.4E-13 112.2 13.6 186 15-223 17-210 (323)
161 2ifg_A High affinity nerve gro 98.9 5.2E-09 1.8E-13 114.5 10.7 103 465-568 12-116 (347)
162 1iqp_A RFCS; clamp loader, ext 98.8 2.1E-08 7.3E-13 108.5 11.9 187 14-223 20-212 (327)
163 2ifg_A High affinity nerve gro 98.8 9.4E-09 3.2E-13 112.5 9.0 101 560-668 13-117 (347)
164 4gt6_A Cell surface protein; l 98.7 4.6E-07 1.6E-11 100.8 19.6 77 368-448 65-146 (394)
165 2ra8_A Uncharacterized protein 98.7 1.4E-08 4.9E-13 110.8 7.0 156 479-637 134-318 (362)
166 2chq_A Replication factor C sm 98.7 1.3E-07 4.5E-12 101.8 13.6 180 15-223 13-204 (319)
167 1jr3_A DNA polymerase III subu 98.6 2.4E-07 8.1E-12 102.3 14.2 196 15-223 12-221 (373)
168 2ra8_A Uncharacterized protein 98.6 5.1E-08 1.8E-12 106.4 7.5 183 438-637 138-341 (362)
169 1jbk_A CLPB protein; beta barr 98.6 5.2E-07 1.8E-11 88.9 13.9 52 15-68 18-69 (195)
170 4h09_A Hypothetical leucine ri 98.6 3.1E-06 1.1E-10 93.5 21.1 140 527-676 212-354 (379)
171 3h4m_A Proteasome-activating n 98.6 3.3E-07 1.1E-11 97.0 12.7 182 14-223 12-231 (285)
172 4gt6_A Cell surface protein; l 98.5 3.7E-07 1.3E-11 101.6 13.4 286 411-711 58-366 (394)
173 1hqc_A RUVB; extended AAA-ATPa 98.5 2.3E-07 7.9E-12 100.3 10.7 180 15-225 8-213 (324)
174 3d8b_A Fidgetin-like protein 1 98.5 1.3E-06 4.6E-11 95.4 16.8 195 3-223 67-295 (357)
175 3te6_A Regulatory protein SIR3 98.5 3E-07 1E-11 97.5 10.5 167 20-191 21-211 (318)
176 1sxj_A Activator 1 95 kDa subu 98.5 7.9E-07 2.7E-11 102.3 14.8 194 15-222 35-252 (516)
177 4h09_A Hypothetical leucine ri 98.5 8.9E-06 3E-10 89.8 22.7 161 531-701 193-355 (379)
178 3bos_A Putative DNA replicatio 98.5 1.8E-07 6.2E-12 96.2 8.0 175 16-223 25-217 (242)
179 3eie_A Vacuolar protein sortin 98.5 2.4E-06 8.3E-11 92.0 16.4 184 14-223 13-228 (322)
180 3b9p_A CG5977-PA, isoform A; A 98.4 2.7E-06 9.3E-11 90.5 16.3 197 1-223 2-233 (297)
181 2qp9_X Vacuolar protein sortin 98.4 5.7E-06 1.9E-10 90.3 18.8 183 15-223 47-261 (355)
182 2z4s_A Chromosomal replication 98.4 4.4E-07 1.5E-11 102.0 9.9 182 19-222 105-305 (440)
183 2qz4_A Paraplegin; AAA+, SPG7, 98.4 2.4E-06 8E-11 89.1 14.5 176 17-217 4-215 (262)
184 1sxj_D Activator 1 41 kDa subu 98.4 4E-06 1.4E-10 91.6 16.6 196 15-223 33-235 (353)
185 1d2n_A N-ethylmaleimide-sensit 98.4 9.3E-06 3.2E-10 85.1 17.7 168 18-215 32-229 (272)
186 1xwi_A SKD1 protein; VPS4B, AA 98.3 8.2E-06 2.8E-10 87.7 17.0 184 14-223 7-223 (322)
187 3pvs_A Replication-associated 98.3 3.9E-06 1.3E-10 94.1 14.8 180 15-223 22-215 (447)
188 2p65_A Hypothetical protein PF 98.3 3.1E-06 1.1E-10 82.9 12.1 51 16-68 19-69 (187)
189 1l8q_A Chromosomal replication 98.3 4.9E-06 1.7E-10 89.8 14.5 178 17-218 9-203 (324)
190 3pfi_A Holliday junction ATP-d 98.3 2.2E-06 7.4E-11 93.2 11.3 177 15-223 25-227 (338)
191 3uk6_A RUVB-like 2; hexameric 98.3 4.4E-06 1.5E-10 91.9 13.8 199 18-223 43-303 (368)
192 1sxj_E Activator 1 40 kDa subu 98.3 1.5E-06 5.1E-11 95.1 9.9 200 15-223 10-237 (354)
193 2zan_A Vacuolar protein sortin 98.3 1.1E-05 3.6E-10 90.9 16.5 184 15-223 130-345 (444)
194 3syl_A Protein CBBX; photosynt 98.3 7.1E-06 2.4E-10 87.8 14.0 148 20-192 32-218 (309)
195 1io0_A Tropomodulin; LRR prote 98.3 4.9E-07 1.7E-11 88.9 4.4 110 528-637 32-162 (185)
196 3vfd_A Spastin; ATPase, microt 98.2 1.6E-05 5.6E-10 88.0 16.1 182 16-223 112-326 (389)
197 3u61_B DNA polymerase accessor 98.2 9.2E-06 3.2E-10 87.6 13.0 180 15-220 22-213 (324)
198 3cf0_A Transitional endoplasmi 98.2 3.8E-05 1.3E-09 81.7 17.3 178 15-218 11-223 (301)
199 1io0_A Tropomodulin; LRR prote 98.1 1.1E-06 3.8E-11 86.3 3.3 90 527-616 60-164 (185)
200 4b4t_J 26S protease regulatory 98.0 6.4E-05 2.2E-09 81.7 15.8 176 16-218 145-356 (405)
201 3rw6_A Nuclear RNA export fact 98.0 2.4E-06 8.2E-11 88.4 3.8 39 577-616 193-233 (267)
202 1a5t_A Delta prime, HOLB; zinc 97.9 0.0001 3.5E-09 79.6 15.4 180 25-221 8-203 (334)
203 1sxj_C Activator 1 40 kDa subu 97.9 6.2E-05 2.1E-09 81.6 13.4 182 15-219 21-208 (340)
204 4b4t_H 26S protease regulatory 97.9 8.7E-05 3E-09 81.7 14.2 174 16-216 206-415 (467)
205 4b4t_L 26S protease subunit RP 97.9 0.0001 3.6E-09 81.3 14.7 176 15-218 177-389 (437)
206 3ec2_A DNA replication protein 97.9 1.6E-05 5.4E-10 77.6 7.0 50 18-67 9-63 (180)
207 3n70_A Transport activator; si 97.9 1.2E-05 3.9E-10 75.5 5.7 48 19-66 1-48 (145)
208 4b4t_M 26S protease regulatory 97.9 4.5E-05 1.5E-09 84.2 11.2 175 14-216 176-387 (434)
209 3hu3_A Transitional endoplasmi 97.9 5.4E-05 1.8E-09 85.7 12.2 180 18-223 203-415 (489)
210 2r62_A Cell division protease 97.9 1.6E-05 5.6E-10 83.0 6.9 155 15-191 7-196 (268)
211 1lv7_A FTSH; alpha/beta domain 97.8 0.00016 5.5E-09 74.8 14.2 183 15-222 8-224 (257)
212 4b4t_K 26S protease regulatory 97.8 0.0001 3.6E-09 81.2 12.0 173 17-216 170-379 (428)
213 4b4t_I 26S protease regulatory 97.8 0.00016 5.6E-09 78.7 12.9 174 15-216 178-388 (437)
214 1qvr_A CLPB protein; coiled co 97.7 8E-05 2.7E-09 91.0 11.7 50 17-68 168-217 (854)
215 3pxg_A Negative regulator of g 97.7 0.00012 4.1E-09 82.9 12.3 148 17-191 178-338 (468)
216 3rw6_A Nuclear RNA export fact 97.7 1.9E-05 6.4E-10 81.6 4.8 84 577-661 167-258 (267)
217 3e4g_A ATP synthase subunit S, 97.7 1.1E-05 3.8E-10 77.3 2.9 85 556-641 62-154 (176)
218 2w58_A DNAI, primosome compone 97.7 8.4E-05 2.9E-09 73.8 9.4 61 16-76 22-88 (202)
219 2ce7_A Cell division protein F 97.7 0.00034 1.2E-08 78.4 14.4 173 17-216 14-221 (476)
220 4fcw_A Chaperone protein CLPB; 97.7 0.00017 5.7E-09 77.0 11.4 50 19-68 17-73 (311)
221 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00036 1.2E-08 84.4 15.6 154 17-191 184-362 (758)
222 3co5_A Putative two-component 97.6 1.8E-05 6.1E-10 74.0 2.8 49 19-67 4-52 (143)
223 1ofh_A ATP-dependent HSL prote 97.6 0.00011 3.7E-09 78.4 9.2 50 19-68 15-76 (310)
224 2gno_A DNA polymerase III, gam 97.6 0.00016 5.5E-09 76.6 9.7 146 23-191 1-152 (305)
225 3pxi_A Negative regulator of g 97.6 0.00037 1.3E-08 84.1 14.2 148 17-191 178-338 (758)
226 2bjv_A PSP operon transcriptio 97.6 5.6E-05 1.9E-09 78.8 5.4 50 18-67 5-54 (265)
227 3cf2_A TER ATPase, transitiona 97.4 0.00089 3.1E-08 79.5 14.1 173 18-218 203-409 (806)
228 1in4_A RUVB, holliday junction 97.4 0.00097 3.3E-08 71.8 13.2 176 15-222 21-222 (334)
229 2kjq_A DNAA-related protein; s 97.4 0.00015 5.2E-09 68.0 5.5 35 42-76 36-70 (149)
230 1ixz_A ATP-dependent metallopr 97.4 0.0015 5.3E-08 67.2 13.5 176 14-216 11-221 (254)
231 1ojl_A Transcriptional regulat 97.4 0.00013 4.4E-09 77.6 5.3 48 19-66 2-49 (304)
232 2c9o_A RUVB-like 1; hexameric 97.3 0.0021 7.4E-08 72.3 15.2 50 18-67 36-88 (456)
233 3e4g_A ATP synthase subunit S, 97.3 0.00017 5.9E-09 69.0 4.7 36 484-519 61-96 (176)
234 1iy2_A ATP-dependent metallopr 97.3 0.0025 8.6E-08 66.6 13.8 177 15-216 36-245 (278)
235 3t15_A Ribulose bisphosphate c 97.3 0.00095 3.2E-08 70.4 10.5 31 40-70 34-64 (293)
236 3pxi_A Negative regulator of g 97.2 0.001 3.4E-08 80.3 11.1 150 19-191 491-675 (758)
237 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0016 5.5E-08 73.4 11.6 173 15-216 27-236 (499)
238 2x8a_A Nuclear valosin-contain 97.1 0.0035 1.2E-07 65.3 12.7 152 17-191 8-191 (274)
239 1ypw_A Transitional endoplasmi 96.9 0.0031 1.1E-07 76.0 12.0 152 17-191 202-385 (806)
240 3m6a_A ATP-dependent protease 96.9 0.0028 9.7E-08 72.8 11.1 50 21-70 83-136 (543)
241 1um8_A ATP-dependent CLP prote 96.8 0.0025 8.4E-08 69.9 8.6 52 19-70 21-100 (376)
242 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0013 4.6E-08 64.1 5.4 16 601-616 96-111 (197)
243 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0023 7.9E-08 77.2 7.7 49 19-67 458-513 (758)
244 2qgz_A Helicase loader, putati 96.6 0.0034 1.2E-07 66.5 7.6 59 18-76 123-187 (308)
245 3lw7_A Adenylate kinase relate 96.5 0.013 4.3E-07 56.1 11.0 22 43-65 2-23 (179)
246 1qvr_A CLPB protein; coiled co 96.3 0.0089 3E-07 72.9 9.9 48 20-67 559-613 (854)
247 1g5t_A COB(I)alamin adenosyltr 96.2 0.0048 1.7E-07 59.8 5.7 132 43-178 29-180 (196)
248 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0026 9E-08 62.0 3.7 60 577-636 95-167 (197)
249 1u0j_A DNA replication protein 95.9 0.032 1.1E-06 56.9 10.4 35 31-65 93-127 (267)
250 3rfe_A Platelet glycoprotein I 95.9 0.011 3.9E-07 53.6 6.1 53 583-637 11-66 (130)
251 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0038 1.3E-07 65.4 2.5 23 43-65 124-146 (331)
252 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.01 3.5E-07 59.8 5.7 34 43-76 24-57 (235)
253 2b8t_A Thymidine kinase; deoxy 95.6 0.0039 1.3E-07 62.4 2.1 110 43-162 13-127 (223)
254 3hws_A ATP-dependent CLP prote 95.6 0.0081 2.8E-07 65.4 4.7 51 20-70 16-79 (363)
255 4a1f_A DNAB helicase, replicat 95.5 0.021 7.1E-07 60.9 7.5 91 2-99 7-97 (338)
256 3cf2_A TER ATPase, transitiona 95.5 0.02 7E-07 67.9 8.0 149 19-191 477-661 (806)
257 2cvh_A DNA repair and recombin 95.5 0.025 8.7E-07 56.3 7.8 33 42-77 20-52 (220)
258 1jr3_D DNA polymerase III, del 95.5 0.11 3.6E-06 55.9 13.1 165 29-221 7-183 (343)
259 2r44_A Uncharacterized protein 95.4 0.011 3.6E-07 63.5 4.7 51 17-71 25-75 (331)
260 1qhx_A CPT, protein (chloramph 95.4 0.0078 2.7E-07 57.9 3.3 25 43-67 4-28 (178)
261 1rz3_A Hypothetical protein rb 95.3 0.019 6.7E-07 56.5 6.1 44 24-67 3-47 (201)
262 3c8u_A Fructokinase; YP_612366 95.3 0.015 5.2E-07 57.6 5.3 40 28-67 8-47 (208)
263 4gp7_A Metallophosphoesterase; 95.3 0.0057 1.9E-07 58.6 1.9 21 43-63 10-30 (171)
264 1vma_A Cell division protein F 95.2 0.02 6.8E-07 60.3 6.1 49 28-76 84-138 (306)
265 3bh0_A DNAB-like replicative h 95.2 0.046 1.6E-06 58.0 9.1 86 2-98 33-118 (315)
266 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.9E-07 56.3 3.6 25 43-67 2-26 (173)
267 3vaa_A Shikimate kinase, SK; s 95.0 0.013 4.5E-07 57.6 3.7 26 42-67 25-50 (199)
268 1odf_A YGR205W, hypothetical 3 94.9 0.025 8.7E-07 59.1 5.9 30 39-68 28-57 (290)
269 3jvv_A Twitching mobility prot 94.9 0.021 7.1E-07 61.6 5.3 110 43-164 124-234 (356)
270 3trf_A Shikimate kinase, SK; a 94.9 0.014 4.7E-07 56.6 3.6 25 43-67 6-30 (185)
271 3rfe_A Platelet glycoprotein I 94.9 0.039 1.3E-06 50.0 6.3 52 349-401 12-66 (130)
272 2ga8_A Hypothetical 39.9 kDa p 94.8 0.02 6.7E-07 61.0 4.5 48 23-70 3-52 (359)
273 1zuh_A Shikimate kinase; alpha 94.6 0.02 7E-07 54.4 3.7 26 42-67 7-32 (168)
274 1g8p_A Magnesium-chelatase 38 94.5 0.016 5.6E-07 62.5 3.2 51 15-67 20-70 (350)
275 1kag_A SKI, shikimate kinase I 94.4 0.017 5.9E-07 55.1 2.8 25 43-67 5-29 (173)
276 3iij_A Coilin-interacting nucl 94.4 0.018 6.2E-07 55.5 2.9 25 42-66 11-35 (180)
277 2orw_A Thymidine kinase; TMTK, 94.3 0.026 9E-07 54.6 4.0 24 43-66 4-27 (184)
278 1nks_A Adenylate kinase; therm 94.3 0.036 1.2E-06 53.8 4.9 26 43-68 2-27 (194)
279 1ly1_A Polynucleotide kinase; 94.3 0.024 8.2E-07 54.4 3.5 22 43-64 3-24 (181)
280 3hr8_A Protein RECA; alpha and 94.3 0.05 1.7E-06 58.4 6.3 55 23-77 41-96 (356)
281 1sky_E F1-ATPase, F1-ATP synth 94.3 0.064 2.2E-06 59.3 7.2 27 44-70 153-179 (473)
282 1xp8_A RECA protein, recombina 94.2 0.057 2E-06 58.3 6.6 57 21-77 52-109 (366)
283 1zp6_A Hypothetical protein AT 94.2 0.024 8.1E-07 55.2 3.3 23 43-65 10-32 (191)
284 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.019 6.5E-07 64.7 3.0 45 19-67 22-66 (500)
285 1via_A Shikimate kinase; struc 94.2 0.022 7.4E-07 54.6 3.0 24 44-67 6-29 (175)
286 3uie_A Adenylyl-sulfate kinase 94.2 0.037 1.3E-06 54.3 4.8 27 41-67 24-50 (200)
287 2jaq_A Deoxyguanosine kinase; 94.1 0.026 8.8E-07 55.5 3.4 24 44-67 2-25 (205)
288 1xjc_A MOBB protein homolog; s 94.1 0.04 1.4E-06 52.2 4.6 29 41-69 3-31 (169)
289 3t61_A Gluconokinase; PSI-biol 94.1 0.024 8.1E-07 55.8 3.1 24 43-66 19-42 (202)
290 1tue_A Replication protein E1; 94.1 0.044 1.5E-06 53.4 4.8 40 28-68 45-84 (212)
291 2rhm_A Putative kinase; P-loop 94.0 0.032 1.1E-06 54.3 3.9 26 42-67 5-30 (193)
292 1kgd_A CASK, peripheral plasma 94.0 0.027 9.3E-07 54.3 3.3 25 43-67 6-30 (180)
293 2yvu_A Probable adenylyl-sulfa 94.0 0.043 1.5E-06 53.1 4.7 27 42-68 13-39 (186)
294 1kht_A Adenylate kinase; phosp 94.0 0.029 1E-06 54.4 3.6 26 43-68 4-29 (192)
295 1g41_A Heat shock protein HSLU 94.0 0.041 1.4E-06 60.7 5.0 52 19-70 15-78 (444)
296 2iyv_A Shikimate kinase, SK; t 94.0 0.025 8.6E-07 54.6 2.9 24 44-67 4-27 (184)
297 2pjz_A Hypothetical protein ST 93.9 0.1 3.4E-06 53.6 7.5 23 43-65 31-53 (263)
298 1uj2_A Uridine-cytidine kinase 93.9 0.032 1.1E-06 57.1 3.8 28 40-67 20-47 (252)
299 1knq_A Gluconate kinase; ALFA/ 93.8 0.036 1.2E-06 53.0 3.8 25 42-66 8-32 (175)
300 1ex7_A Guanylate kinase; subst 93.8 0.026 9E-07 54.6 2.7 28 43-70 2-29 (186)
301 2ze6_A Isopentenyl transferase 93.8 0.034 1.2E-06 56.9 3.8 25 43-67 2-26 (253)
302 4eun_A Thermoresistant glucoki 93.7 0.038 1.3E-06 54.3 3.8 25 42-66 29-53 (200)
303 2pt5_A Shikimate kinase, SK; a 93.7 0.039 1.3E-06 52.3 3.7 24 44-67 2-25 (168)
304 1y63_A LMAJ004144AAA protein; 93.7 0.036 1.2E-06 53.6 3.5 24 42-65 10-33 (184)
305 1e6c_A Shikimate kinase; phosp 93.7 0.03 1E-06 53.3 3.0 25 43-67 3-27 (173)
306 2c95_A Adenylate kinase 1; tra 93.7 0.037 1.3E-06 53.9 3.6 26 42-67 9-34 (196)
307 1zu4_A FTSY; GTPase, signal re 93.7 0.062 2.1E-06 57.0 5.5 36 41-76 104-139 (320)
308 2vli_A Antibiotic resistance p 93.7 0.027 9.3E-07 54.2 2.6 25 43-67 6-30 (183)
309 1q57_A DNA primase/helicase; d 93.6 0.3 1E-05 55.4 11.5 52 43-100 243-295 (503)
310 3bgw_A DNAB-like replicative h 93.6 0.13 4.5E-06 57.2 8.3 70 22-98 178-247 (444)
311 2bwj_A Adenylate kinase 5; pho 93.5 0.039 1.3E-06 53.9 3.5 25 43-67 13-37 (199)
312 3tlx_A Adenylate kinase 2; str 93.5 0.048 1.6E-06 55.5 4.3 26 41-66 28-53 (243)
313 2bdt_A BH3686; alpha-beta prot 93.5 0.041 1.4E-06 53.4 3.5 22 43-64 3-24 (189)
314 1ukz_A Uridylate kinase; trans 93.5 0.05 1.7E-06 53.4 4.2 26 41-66 14-39 (203)
315 2qor_A Guanylate kinase; phosp 93.5 0.034 1.1E-06 54.9 2.9 26 42-67 12-37 (204)
316 3cm0_A Adenylate kinase; ATP-b 93.5 0.044 1.5E-06 52.9 3.7 24 43-66 5-28 (186)
317 3a00_A Guanylate kinase, GMP k 93.5 0.034 1.2E-06 53.9 2.9 25 43-67 2-26 (186)
318 1tev_A UMP-CMP kinase; ploop, 93.5 0.042 1.5E-06 53.4 3.6 24 43-66 4-27 (196)
319 3fwy_A Light-independent proto 93.5 0.059 2E-06 57.0 4.9 30 40-69 46-75 (314)
320 1uf9_A TT1252 protein; P-loop, 93.4 0.045 1.6E-06 53.6 3.8 26 40-65 6-31 (203)
321 2if2_A Dephospho-COA kinase; a 93.4 0.041 1.4E-06 54.1 3.3 21 44-64 3-23 (204)
322 1cke_A CK, MSSA, protein (cyti 93.3 0.045 1.5E-06 54.8 3.6 24 43-66 6-29 (227)
323 3sr0_A Adenylate kinase; phosp 93.3 0.28 9.5E-06 48.2 9.2 90 44-141 2-93 (206)
324 1qf9_A UMP/CMP kinase, protein 93.3 0.058 2E-06 52.3 4.3 26 42-67 6-31 (194)
325 2cdn_A Adenylate kinase; phosp 93.3 0.048 1.7E-06 53.5 3.7 26 42-67 20-45 (201)
326 1nn5_A Similar to deoxythymidy 93.3 0.069 2.4E-06 52.9 4.9 28 42-69 9-36 (215)
327 3tr0_A Guanylate kinase, GMP k 93.2 0.045 1.5E-06 53.8 3.4 24 43-66 8-31 (205)
328 2plr_A DTMP kinase, probable t 93.2 0.054 1.8E-06 53.5 3.9 28 43-70 5-32 (213)
329 2grj_A Dephospho-COA kinase; T 93.2 0.05 1.7E-06 53.0 3.5 25 41-65 11-35 (192)
330 2j41_A Guanylate kinase; GMP, 93.1 0.047 1.6E-06 53.7 3.4 24 43-66 7-30 (207)
331 3nwj_A ATSK2; P loop, shikimat 93.1 0.042 1.4E-06 56.0 3.0 25 43-67 49-73 (250)
332 3ice_A Transcription terminati 93.1 0.032 1.1E-06 59.7 2.0 26 43-68 175-200 (422)
333 3tau_A Guanylate kinase, GMP k 93.1 0.049 1.7E-06 53.9 3.4 26 42-67 8-33 (208)
334 2pbr_A DTMP kinase, thymidylat 93.1 0.054 1.9E-06 52.6 3.7 24 44-67 2-25 (195)
335 2wwf_A Thymidilate kinase, put 93.0 0.055 1.9E-06 53.5 3.7 27 42-68 10-36 (212)
336 2px0_A Flagellar biosynthesis 93.0 0.11 3.8E-06 54.4 6.2 27 41-67 104-130 (296)
337 1aky_A Adenylate kinase; ATP:A 93.0 0.054 1.9E-06 54.0 3.6 25 43-67 5-29 (220)
338 2qt1_A Nicotinamide riboside k 93.0 0.057 1.9E-06 53.3 3.7 25 41-65 20-44 (207)
339 1ye8_A Protein THEP1, hypothet 92.9 0.062 2.1E-06 51.6 3.8 24 44-67 2-25 (178)
340 1v5w_A DMC1, meiotic recombina 92.9 0.18 6.2E-06 54.0 7.8 49 29-77 109-163 (343)
341 2ewv_A Twitching motility prot 92.9 0.097 3.3E-06 56.8 5.7 109 42-162 136-245 (372)
342 3io5_A Recombination and repai 92.9 0.21 7.1E-06 52.1 7.8 49 29-77 12-65 (333)
343 1jjv_A Dephospho-COA kinase; P 92.9 0.052 1.8E-06 53.5 3.2 22 43-64 3-24 (206)
344 3k1j_A LON protease, ATP-depen 92.8 0.045 1.5E-06 63.8 3.1 47 19-69 41-87 (604)
345 3asz_A Uridine kinase; cytidin 92.8 0.068 2.3E-06 52.8 4.1 27 41-67 5-31 (211)
346 3ney_A 55 kDa erythrocyte memb 92.8 0.056 1.9E-06 52.7 3.3 27 41-67 18-44 (197)
347 1gvn_B Zeta; postsegregational 92.8 0.096 3.3E-06 54.6 5.3 26 41-66 32-57 (287)
348 4e22_A Cytidylate kinase; P-lo 92.8 0.054 1.9E-06 55.4 3.3 25 43-67 28-52 (252)
349 2bbw_A Adenylate kinase 4, AK4 92.7 0.061 2.1E-06 54.7 3.6 26 42-67 27-52 (246)
350 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.063 2.2E-06 55.2 3.7 25 43-67 5-29 (260)
351 3tqc_A Pantothenate kinase; bi 92.6 0.083 2.8E-06 55.8 4.6 28 40-67 90-117 (321)
352 2q6t_A DNAB replication FORK h 92.6 0.25 8.6E-06 55.0 8.7 73 21-100 180-253 (444)
353 2p5t_B PEZT; postsegregational 92.5 0.079 2.7E-06 54.2 4.1 27 41-67 31-57 (253)
354 3p32_A Probable GTPase RV1496/ 92.5 0.14 4.7E-06 55.3 6.2 39 30-68 67-105 (355)
355 1lvg_A Guanylate kinase, GMP k 92.4 0.056 1.9E-06 53.0 2.8 24 43-66 5-28 (198)
356 3ake_A Cytidylate kinase; CMP 92.4 0.076 2.6E-06 52.2 3.8 24 44-67 4-27 (208)
357 2z0h_A DTMP kinase, thymidylat 92.4 0.075 2.6E-06 51.7 3.7 25 44-68 2-26 (197)
358 2r6a_A DNAB helicase, replicat 92.4 0.21 7.3E-06 55.8 7.8 68 23-97 185-253 (454)
359 1gtv_A TMK, thymidylate kinase 92.4 0.048 1.6E-06 54.0 2.2 25 44-68 2-26 (214)
360 1zd8_A GTP:AMP phosphotransfer 92.4 0.062 2.1E-06 53.9 3.1 24 43-66 8-31 (227)
361 2z43_A DNA repair and recombin 92.4 0.13 4.4E-06 54.7 5.7 49 29-77 94-148 (324)
362 3e70_C DPA, signal recognition 92.3 0.15 5.2E-06 54.1 6.2 29 41-69 128-156 (328)
363 3fb4_A Adenylate kinase; psych 92.3 0.078 2.7E-06 52.6 3.7 23 44-66 2-24 (216)
364 3umf_A Adenylate kinase; rossm 92.3 0.092 3.2E-06 52.1 4.1 27 40-66 27-53 (217)
365 1m7g_A Adenylylsulfate kinase; 92.2 0.086 3E-06 52.2 3.9 26 42-67 25-50 (211)
366 2pez_A Bifunctional 3'-phospho 92.2 0.091 3.1E-06 50.4 4.0 25 43-67 6-30 (179)
367 1zak_A Adenylate kinase; ATP:A 92.2 0.068 2.3E-06 53.4 3.1 25 43-67 6-30 (222)
368 2wsm_A Hydrogenase expression/ 92.2 0.099 3.4E-06 52.0 4.3 45 23-69 13-57 (221)
369 2hf9_A Probable hydrogenase ni 92.1 0.14 5E-06 50.9 5.4 38 29-68 27-64 (226)
370 2f6r_A COA synthase, bifunctio 92.0 0.083 2.9E-06 54.9 3.6 24 41-64 74-97 (281)
371 3e1s_A Exodeoxyribonuclease V, 92.0 0.28 9.7E-06 56.4 8.3 34 43-76 205-238 (574)
372 3r20_A Cytidylate kinase; stru 92.0 0.088 3E-06 52.8 3.6 26 42-67 9-34 (233)
373 3dl0_A Adenylate kinase; phosp 92.0 0.086 2.9E-06 52.3 3.5 23 44-66 2-24 (216)
374 1znw_A Guanylate kinase, GMP k 92.0 0.078 2.7E-06 52.3 3.2 24 43-66 21-44 (207)
375 2jeo_A Uridine-cytidine kinase 91.9 0.083 2.8E-06 53.7 3.4 26 41-66 24-49 (245)
376 3aez_A Pantothenate kinase; tr 91.9 0.094 3.2E-06 55.4 3.8 28 40-67 88-115 (312)
377 1z6g_A Guanylate kinase; struc 91.8 0.075 2.6E-06 53.0 2.8 24 43-66 24-47 (218)
378 1j8m_F SRP54, signal recogniti 91.7 0.19 6.6E-06 52.5 6.0 35 42-76 98-132 (297)
379 2v54_A DTMP kinase, thymidylat 91.7 0.091 3.1E-06 51.5 3.3 24 43-66 5-28 (204)
380 3d3q_A TRNA delta(2)-isopenten 91.7 0.095 3.2E-06 55.6 3.6 25 43-67 8-32 (340)
381 1rj9_A FTSY, signal recognitio 91.7 0.15 5.2E-06 53.5 5.2 28 42-69 102-129 (304)
382 1np6_A Molybdopterin-guanine d 91.6 0.15 5E-06 48.7 4.6 27 42-68 6-32 (174)
383 1vht_A Dephospho-COA kinase; s 91.6 0.098 3.3E-06 52.0 3.5 22 43-64 5-26 (218)
384 3be4_A Adenylate kinase; malar 91.6 0.096 3.3E-06 52.1 3.4 24 43-66 6-29 (217)
385 1htw_A HI0065; nucleotide-bind 91.6 0.11 3.7E-06 48.8 3.5 25 42-66 33-57 (158)
386 2dr3_A UPF0273 protein PH0284; 91.6 0.19 6.7E-06 50.7 5.8 34 43-76 24-57 (247)
387 1ak2_A Adenylate kinase isoenz 91.5 0.1 3.6E-06 52.5 3.6 25 43-67 17-41 (233)
388 1a7j_A Phosphoribulokinase; tr 91.4 0.082 2.8E-06 55.2 2.7 27 41-67 4-30 (290)
389 1s96_A Guanylate kinase, GMP k 91.4 0.1 3.6E-06 51.9 3.4 25 43-67 17-41 (219)
390 2f1r_A Molybdopterin-guanine d 91.3 0.076 2.6E-06 50.6 2.2 34 43-76 3-38 (171)
391 1e4v_A Adenylate kinase; trans 91.3 0.12 3.9E-06 51.3 3.7 23 44-66 2-24 (214)
392 2xb4_A Adenylate kinase; ATP-b 91.3 0.12 4E-06 51.7 3.7 23 44-66 2-24 (223)
393 1q3t_A Cytidylate kinase; nucl 91.3 0.12 4E-06 52.2 3.7 28 40-67 14-41 (236)
394 2xxa_A Signal recognition part 91.2 0.25 8.4E-06 54.6 6.5 42 28-69 79-127 (433)
395 3end_A Light-independent proto 91.2 0.16 5.6E-06 53.4 4.9 37 40-76 39-75 (307)
396 4a74_A DNA repair and recombin 91.2 0.12 4E-06 51.8 3.5 38 29-66 12-49 (231)
397 2ehv_A Hypothetical protein PH 91.1 0.15 5E-06 51.8 4.3 22 43-64 31-52 (251)
398 2i3b_A HCR-ntpase, human cance 91.1 0.11 3.8E-06 50.3 3.2 24 44-67 3-26 (189)
399 3kl4_A SRP54, signal recogniti 91.1 0.22 7.6E-06 54.7 5.9 36 41-76 96-131 (433)
400 1svm_A Large T antigen; AAA+ f 91.1 0.16 5.5E-06 54.9 4.7 27 40-66 167-193 (377)
401 1cr0_A DNA primase/helicase; R 91.1 0.28 9.7E-06 51.3 6.6 34 43-76 36-70 (296)
402 2eyu_A Twitching motility prot 91.0 0.16 5.6E-06 52.0 4.5 109 43-163 26-135 (261)
403 3crm_A TRNA delta(2)-isopenten 91.0 0.11 3.8E-06 54.7 3.2 25 43-67 6-30 (323)
404 2pt7_A CAG-ALFA; ATPase, prote 90.9 0.17 5.7E-06 53.9 4.6 106 43-163 172-277 (330)
405 1n0w_A DNA repair protein RAD5 90.9 0.17 5.9E-06 51.0 4.6 49 29-77 11-65 (243)
406 2v3c_C SRP54, signal recogniti 90.9 0.17 5.9E-06 55.9 4.8 35 42-76 99-133 (432)
407 3zvl_A Bifunctional polynucleo 90.8 0.44 1.5E-05 52.5 8.1 26 41-66 257-282 (416)
408 2og2_A Putative signal recogni 90.8 0.29 1E-05 52.5 6.4 28 42-69 157-184 (359)
409 3lnc_A Guanylate kinase, GMP k 90.8 0.09 3.1E-06 52.9 2.3 24 43-66 28-52 (231)
410 3b9q_A Chloroplast SRP recepto 90.8 0.18 6.3E-06 52.8 4.8 27 42-68 100-126 (302)
411 2yhs_A FTSY, cell division pro 90.7 0.28 9.7E-06 54.6 6.3 34 42-76 293-326 (503)
412 1ypw_A Transitional endoplasmi 90.6 0.13 4.3E-06 62.0 3.7 53 18-70 476-539 (806)
413 3dm5_A SRP54, signal recogniti 90.5 0.33 1.1E-05 53.5 6.6 29 41-69 99-127 (443)
414 2onk_A Molybdate/tungstate ABC 90.4 0.15 5E-06 51.6 3.4 24 40-64 23-46 (240)
415 1cp2_A CP2, nitrogenase iron p 90.3 0.23 7.7E-06 51.1 4.9 34 43-76 2-35 (269)
416 3cmu_A Protein RECA, recombina 90.3 0.25 8.7E-06 64.0 6.2 48 29-76 1413-1461(2050)
417 1sq5_A Pantothenate kinase; P- 90.3 0.16 5.6E-06 53.5 3.8 27 41-67 79-105 (308)
418 3l0o_A Transcription terminati 90.2 0.43 1.5E-05 51.1 6.8 26 43-68 176-201 (427)
419 3a8t_A Adenylate isopentenyltr 90.2 0.11 3.8E-06 54.9 2.4 25 43-67 41-65 (339)
420 3b85_A Phosphate starvation-in 90.2 0.13 4.5E-06 50.7 2.8 23 43-65 23-45 (208)
421 2ck3_D ATP synthase subunit be 90.1 0.41 1.4E-05 52.8 6.8 34 43-76 154-188 (482)
422 1ltq_A Polynucleotide kinase; 90.1 0.16 5.4E-06 53.3 3.5 23 43-65 3-25 (301)
423 1tf7_A KAIC; homohexamer, hexa 90.1 0.45 1.5E-05 54.2 7.6 40 29-68 268-307 (525)
424 1fx0_B ATP synthase beta chain 90.0 0.36 1.2E-05 53.5 6.3 33 44-76 167-200 (498)
425 1yrb_A ATP(GTP)binding protein 89.9 0.27 9.2E-06 50.3 5.1 27 41-67 13-39 (262)
426 3tif_A Uncharacterized ABC tra 89.9 0.15 5.1E-06 51.4 3.0 22 43-64 32-53 (235)
427 2i1q_A DNA repair and recombin 89.8 0.29 1E-05 51.9 5.4 38 28-65 84-121 (322)
428 2r8r_A Sensor protein; KDPD, P 89.8 0.24 8.4E-06 49.0 4.3 29 44-72 8-37 (228)
429 2pcj_A ABC transporter, lipopr 89.8 0.15 5.3E-06 50.9 3.0 22 43-64 31-52 (224)
430 3exa_A TRNA delta(2)-isopenten 89.8 0.17 5.7E-06 52.8 3.3 24 43-66 4-27 (322)
431 1nlf_A Regulatory protein REPA 89.8 0.39 1.4E-05 49.6 6.2 25 43-67 31-55 (279)
432 3fdi_A Uncharacterized protein 89.8 0.19 6.4E-06 49.3 3.5 25 43-67 7-31 (201)
433 1ls1_A Signal recognition part 89.7 0.26 8.8E-06 51.5 4.7 28 42-69 98-125 (295)
434 2j37_W Signal recognition part 89.6 0.4 1.4E-05 53.9 6.4 29 41-69 100-128 (504)
435 1w36_D RECD, exodeoxyribonucle 89.6 0.88 3E-05 52.8 9.6 26 42-67 164-189 (608)
436 2cbz_A Multidrug resistance-as 89.4 0.17 5.9E-06 51.0 3.0 22 43-64 32-53 (237)
437 2afh_E Nitrogenase iron protei 89.3 0.28 9.7E-06 51.0 4.7 27 43-69 3-29 (289)
438 4eaq_A DTMP kinase, thymidylat 89.3 0.23 7.9E-06 49.8 3.9 27 42-68 26-52 (229)
439 2d2e_A SUFC protein; ABC-ATPas 89.2 0.19 6.5E-06 51.2 3.2 22 43-64 30-51 (250)
440 1oix_A RAS-related protein RAB 89.2 0.24 8.4E-06 47.9 3.9 24 42-65 29-52 (191)
441 3gfo_A Cobalt import ATP-bindi 89.2 0.18 6.2E-06 52.1 3.0 22 43-64 35-56 (275)
442 1u94_A RECA protein, recombina 89.2 0.31 1.1E-05 52.3 4.9 57 21-77 41-98 (356)
443 1g8f_A Sulfate adenylyltransfe 89.2 0.25 8.5E-06 55.6 4.3 28 41-68 394-421 (511)
444 2p67_A LAO/AO transport system 89.1 0.44 1.5E-05 50.9 6.2 29 39-67 53-81 (341)
445 1b0u_A Histidine permease; ABC 89.0 0.19 6.4E-06 51.6 3.0 22 43-64 33-54 (262)
446 3foz_A TRNA delta(2)-isopenten 89.0 0.23 8E-06 51.6 3.7 25 42-66 10-34 (316)
447 2zr9_A Protein RECA, recombina 89.0 0.32 1.1E-05 52.2 4.9 57 21-77 39-96 (349)
448 2zu0_C Probable ATP-dependent 89.0 0.2 6.9E-06 51.5 3.2 23 43-65 47-69 (267)
449 4g1u_C Hemin import ATP-bindin 88.9 0.19 6.6E-06 51.6 3.0 22 43-64 38-59 (266)
450 1ji0_A ABC transporter; ATP bi 88.7 0.21 7E-06 50.6 3.0 22 43-64 33-54 (240)
451 2pze_A Cystic fibrosis transme 88.7 0.21 7.1E-06 50.1 3.0 23 43-65 35-57 (229)
452 2olj_A Amino acid ABC transpor 88.7 0.21 7E-06 51.3 3.0 22 43-64 51-72 (263)
453 3gmt_A Adenylate kinase; ssgci 88.7 0.25 8.4E-06 49.3 3.5 24 43-66 9-32 (230)
454 1g6h_A High-affinity branched- 88.7 0.21 7.1E-06 51.1 3.0 22 43-64 34-55 (257)
455 2v9p_A Replication protein E1; 88.7 0.22 7.6E-06 52.1 3.3 24 43-66 127-150 (305)
456 2ff7_A Alpha-hemolysin translo 88.6 0.21 7.2E-06 50.7 3.0 22 43-64 36-57 (247)
457 1mv5_A LMRA, multidrug resista 88.6 0.22 7.6E-06 50.4 3.2 22 43-64 29-50 (243)
458 1sgw_A Putative ABC transporte 88.6 0.18 6.2E-06 49.9 2.4 22 43-64 36-57 (214)
459 4edh_A DTMP kinase, thymidylat 88.6 0.4 1.4E-05 47.3 5.0 27 43-69 7-33 (213)
460 2ocp_A DGK, deoxyguanosine kin 88.5 0.27 9.3E-06 49.6 3.8 25 43-67 3-27 (241)
461 2f9l_A RAB11B, member RAS onco 88.5 0.23 7.8E-06 48.3 3.1 24 42-65 5-28 (199)
462 2dyk_A GTP-binding protein; GT 88.5 0.27 9.3E-06 45.5 3.5 22 43-64 2-23 (161)
463 3hjn_A DTMP kinase, thymidylat 88.4 0.67 2.3E-05 45.1 6.4 33 44-76 2-34 (197)
464 2h92_A Cytidylate kinase; ross 88.4 0.21 7E-06 49.6 2.8 24 43-66 4-27 (219)
465 2ghi_A Transport protein; mult 88.4 0.22 7.6E-06 51.0 3.0 23 43-65 47-69 (260)
466 2wji_A Ferrous iron transport 88.3 0.28 9.4E-06 46.1 3.5 22 43-64 4-25 (165)
467 2qm8_A GTPase/ATPase; G protei 88.3 0.56 1.9E-05 50.0 6.3 37 31-67 44-80 (337)
468 1vpl_A ABC transporter, ATP-bi 88.3 0.23 7.8E-06 50.7 3.0 22 43-64 42-63 (256)
469 3cmw_A Protein RECA, recombina 88.2 0.34 1.2E-05 62.0 5.1 55 22-76 711-766 (1706)
470 2zej_A Dardarin, leucine-rich 88.2 0.22 7.7E-06 47.7 2.8 21 44-64 4-24 (184)
471 3eph_A TRNA isopentenyltransfe 88.2 0.29 9.8E-06 53.0 3.8 25 43-67 3-27 (409)
472 2ged_A SR-beta, signal recogni 88.2 0.29 9.8E-06 47.2 3.6 25 41-65 47-71 (193)
473 2ixe_A Antigen peptide transpo 88.1 0.24 8.1E-06 51.1 3.0 22 43-64 46-67 (271)
474 2qi9_C Vitamin B12 import ATP- 88.1 0.24 8.2E-06 50.3 3.0 25 43-67 27-51 (249)
475 4dzz_A Plasmid partitioning pr 88.0 0.38 1.3E-05 47.0 4.3 34 43-76 2-36 (206)
476 4hlc_A DTMP kinase, thymidylat 88.0 0.47 1.6E-05 46.5 5.0 30 43-72 3-32 (205)
477 3kta_A Chromosome segregation 88.0 0.27 9.2E-06 47.1 3.2 23 43-65 27-49 (182)
478 2ce2_X GTPase HRAS; signaling 88.0 0.27 9.2E-06 45.7 3.1 21 44-64 5-25 (166)
479 3sop_A Neuronal-specific septi 87.9 0.27 9.3E-06 50.6 3.4 22 44-65 4-25 (270)
480 2qmh_A HPR kinase/phosphorylas 87.9 0.24 8.2E-06 47.9 2.7 23 43-65 35-57 (205)
481 2yz2_A Putative ABC transporte 87.9 0.25 8.5E-06 50.8 3.0 22 43-64 34-55 (266)
482 2axn_A 6-phosphofructo-2-kinas 87.9 0.32 1.1E-05 55.2 4.2 30 41-70 34-63 (520)
483 2ihy_A ABC transporter, ATP-bi 87.8 0.25 8.6E-06 51.1 3.0 22 43-64 48-69 (279)
484 2nq2_C Hypothetical ABC transp 87.8 0.26 8.7E-06 50.3 3.0 22 43-64 32-53 (253)
485 3con_A GTPase NRAS; structural 87.6 0.29 9.8E-06 47.1 3.1 22 43-64 22-43 (190)
486 1tq4_A IIGP1, interferon-induc 87.5 0.23 7.9E-06 54.3 2.7 24 41-64 68-91 (413)
487 1z2a_A RAS-related protein RAB 87.5 0.37 1.3E-05 44.9 3.8 23 42-64 5-27 (168)
488 3hdt_A Putative kinase; struct 87.3 0.36 1.2E-05 48.0 3.7 26 42-67 14-39 (223)
489 3v9p_A DTMP kinase, thymidylat 87.2 0.42 1.4E-05 47.7 4.1 27 43-69 26-52 (227)
490 2fz4_A DNA repair protein RAD2 87.1 1.8 6.3E-05 43.3 9.0 22 45-66 111-132 (237)
491 1fzq_A ADP-ribosylation factor 87.0 0.45 1.6E-05 45.4 4.2 24 41-64 15-38 (181)
492 2vp4_A Deoxynucleoside kinase; 87.0 0.23 8E-06 49.7 2.2 24 42-65 20-43 (230)
493 2wjg_A FEOB, ferrous iron tran 87.0 0.38 1.3E-05 46.0 3.6 23 42-64 7-29 (188)
494 3nh6_A ATP-binding cassette SU 86.9 0.25 8.7E-06 51.7 2.4 22 43-64 81-102 (306)
495 2j9r_A Thymidine kinase; TK1, 86.8 0.6 2E-05 45.8 4.9 108 42-162 28-139 (214)
496 2zts_A Putative uncharacterize 86.8 0.63 2.1E-05 46.9 5.3 34 43-76 31-65 (251)
497 1c1y_A RAS-related protein RAP 86.8 0.35 1.2E-05 45.1 3.1 21 44-64 5-25 (167)
498 4gzl_A RAS-related C3 botulinu 86.6 0.39 1.3E-05 46.9 3.5 23 42-64 30-52 (204)
499 1m7b_A RND3/RHOE small GTP-bin 86.6 0.35 1.2E-05 46.2 3.1 23 42-64 7-29 (184)
500 2ffh_A Protein (FFH); SRP54, s 86.6 0.54 1.8E-05 51.6 4.9 28 42-69 98-125 (425)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-37 Score=378.05 Aligned_cols=370 Identities=18% Similarity=0.183 Sum_probs=261.9
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCc-cchhhhcCC-ccCceeecCcCcCCCCCCCCcccccCCCCcEEE
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIE-QVFDSVQHY-LKLNQIITAAFNFFSKTPTPSLTQHLNKLAILN 422 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~-~l~~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~ 422 (887)
++|++|++++|.+....+...+++|++|++++|.++ .+|..+... ++|+.|++++|...... |..++.+++|++|+
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV--PPFFGSCSLLESLA 324 (768)
T ss_dssp SSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC--CGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc--chHHhcCCCccEEE
Confidence 445555555554432222224455555555555554 344444332 56666666655432222 34456666666666
Q ss_pred ecCCCCCCCCCCc-c-CCCCccEEEeecCCCCCCCccccc--C-CccEEEccCCCCC-CCCcchhc--CCCCcEEecccC
Q 045202 423 LSGRKNLQSLPAR-I-HLGLLKELNLSGCSKLKRLPEISS--G-NIETMRLDGTAPE-ELPSSIEC--LSKLLHLDLVDC 494 (887)
Q Consensus 423 L~~~~~~~~lp~~-~-~l~~L~~L~L~~~~~l~~lp~~~~--~-~L~~L~L~~~~i~-~lp~~i~~--l~~L~~L~L~~~ 494 (887)
+++|.+.+.+|.. + ++++|++|+|++|...+.+|.... . +|++|++++|.+. .+|..+.. +++|+.|++++|
T Consensus 325 L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n 404 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404 (768)
T ss_dssp CCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS
T ss_pred CCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC
Confidence 6666665555543 3 366666666666654445555443 3 6777777766665 45555554 667788888887
Q ss_pred CCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCc-cCCccccCCCCCCEEEccccCCCccccc
Q 045202 495 KTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAIT-EVPPSIVRLKRVRGIYLGRNRGLSLPIT 573 (887)
Q Consensus 495 ~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~n~~~~~~~~ 573 (887)
.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.. .+|
T Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p 483 (768)
T 3rgz_A 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIP 483 (768)
T ss_dssp EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCC
T ss_pred ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-cCC
Confidence 777778888888888888888888888888888888888888888888888 677788888888888888887553 457
Q ss_pred ccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCc-ccchhhhcCCCccEeeccccccccccCCCccc---
Q 045202 574 FSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCN--- 648 (887)
Q Consensus 574 ~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~--- 648 (887)
..+.++++|+.|+|++|.+++ +|.+++.+++|++|+|++|+++ .+|..+..+++|+.|+|++|+..+.+|.-...
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccc
Confidence 778888888888888888884 7888888888888888888888 78888888888888888888877666631100
Q ss_pred ---------------------------------------------------------------ccccCccceEecccCCC
Q 045202 649 ---------------------------------------------------------------LLVGCASLHGTGIIRRF 665 (887)
Q Consensus 649 ---------------------------------------------------------------l~~~~~~L~~L~l~~N~ 665 (887)
.+.++++|+.|++++|.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 01145778888999999
Q ss_pred CCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhhhhcCC
Q 045202 666 IPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEAREKIS 717 (887)
Q Consensus 666 l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~~~ 717 (887)
+++..|..+..+..|+.|+|++|.+++.+|..+.+++.|+.|+|++|.+.+.
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 9888888888888888899999999988888888888888888888866653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.9e-36 Score=364.19 Aligned_cols=367 Identities=20% Similarity=0.237 Sum_probs=205.0
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEec
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLS 424 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 424 (887)
++|++|++++|.+....+...+++|++|++++|.+...+..+..+++|++|++++|..... .+..+..+++|++|+++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD--FSRAISTCTELKLLNIS 255 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC--HHHHTTTCSSCCEEECC
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc--ccHHHhcCCCCCEEECC
Confidence 3444444444443332222344444444444444444332244444444444444432111 12233444444444444
Q ss_pred CCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc---CCccEEEccCCCCC-CCCcchhcCCCCcEEecccCCCCccC
Q 045202 425 GRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS---GNIETMRLDGTAPE-ELPSSIECLSKLLHLDLVDCKTLKSL 500 (887)
Q Consensus 425 ~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~l 500 (887)
+|.+.+.+|.. .+++|++|+|++|...+.+|.... ++|++|+|++|.+. .+|..++++++|++|+|++|.+.+.+
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i 334 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence 44444444332 444444444444433333443332 44555555555444 34444555555555555555444444
Q ss_pred Ccc-cCCCCCCcEEEeeCCCCCCCCchhhcCCC-CCceeeccCccCc-cCCccccC--CCCCCEEEccccCCCccccccc
Q 045202 501 PSG-LGKLKSLGILSIDGCSNLQRLPEELGNLQ-ALDSLHAVGTAIT-EVPPSIVR--LKRVRGIYLGRNRGLSLPITFS 575 (887)
Q Consensus 501 p~~-l~~L~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~n~i~-~lp~~l~~--l~~L~~L~L~~n~~~~~~~~~~ 575 (887)
|.. +.++++|++|++++|.+.+.+|..+..++ +|++|++++|.+. .+|..+.. +++|+.|++++|.+. ..+|..
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~ 413 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPT 413 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-EECCGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-cccCHH
Confidence 433 44555555555555554444555554444 5555555555544 33444433 455666666555533 234556
Q ss_pred ccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCc-ccchhhhcCCCccEeeccccccccccCCCcccccccC
Q 045202 576 VDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGC 653 (887)
Q Consensus 576 ~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~ 653 (887)
+..+++|+.|++++|.+++ +|..++.+++|+.|++++|+++ .+|..+..+++|++|+|++|...+.+|. .+.+|
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l 489 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS----GLSNC 489 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH----HHhcC
Confidence 6777777777777777764 6677777777777777777777 6677777777777777777765444432 12367
Q ss_pred ccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhhhhcCCCC
Q 045202 654 ASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEAREKISYP 719 (887)
Q Consensus 654 ~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~~~~~ 719 (887)
++|+.|++++|.+++..|..+..+..|+.|+|++|.+++.+|..+..+++|+.+++++|...+.+|
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 788888888888887777777777788888888888887777777777778888877776655443
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-34 Score=342.01 Aligned_cols=386 Identities=18% Similarity=0.136 Sum_probs=184.1
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCCccc-hhhhcCCccC
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPS-NI-HPEKLVLLKMPHSNIEQV-FDSVQHYLKL 392 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~L 392 (887)
++|+.|++.++. .....|..+.. .+|++|++++|.+..+++ .+ .+++|++|++++|.++.+ +..+..+++|
T Consensus 57 ~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 57 INLTFLDLTRCQ-----IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred ccceEEECCCCc-----cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 466777776543 22334555555 677777777777665533 33 567777777777777766 3556667777
Q ss_pred ceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCcc-CCCCcc--EEEeecCCCCCCCccccc---------
Q 045202 393 NQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARI-HLGLLK--ELNLSGCSKLKRLPEISS--------- 460 (887)
Q Consensus 393 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~--~L~L~~~~~l~~lp~~~~--------- 460 (887)
++|++++|.. ...+.+.... +++|++|++++|.+.+..|..+ .+++|+ .|++++|......|..+.
T Consensus 132 ~~L~L~~n~l-~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 132 ESLYLGSNHI-SSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CEEECCSSCC-CCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cEEECCCCcc-cccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 7777776652 2322233322 5666666666665554434333 244444 444444432211111100
Q ss_pred --------------------------------------------CCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCC
Q 045202 461 --------------------------------------------GNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCK 495 (887)
Q Consensus 461 --------------------------------------------~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~ 495 (887)
.+|+.|++++|.+..+++. +..+++|+.|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 0344444444444444433 4444555555555443
Q ss_pred CCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCc-cCCc-cccCCCCCCEEEccccCCCccc--
Q 045202 496 TLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAIT-EVPP-SIVRLKRVRGIYLGRNRGLSLP-- 571 (887)
Q Consensus 496 ~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~-~lp~-~l~~l~~L~~L~L~~n~~~~~~-- 571 (887)
+. .+|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+....
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc
Confidence 22 44444444555555555554444444444444444444444444443 3332 2444444444444444433221
Q ss_pred -----------------------ccccccCCCcccEEecccCCCCCc-c-ccccCCCCCcEEEcCCCCCcc-cchhhhcC
Q 045202 572 -----------------------ITFSVDGLQNLLDLSLNDCCIMEL-P-ESLGLLSSVRELHLNGNNFER-IPESIIQL 625 (887)
Q Consensus 572 -----------------------~~~~~~~l~~L~~L~Ls~n~l~~l-p-~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l 625 (887)
.+..+..+++|+.|++++|.+... | ..+..+++|+.|++++|.++. .|..+..+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 223344444444444444444432 1 224444455555555554442 23344444
Q ss_pred CCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHH
Q 045202 626 SNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLA 705 (887)
Q Consensus 626 ~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~ 705 (887)
++|++|+|++|+..+.....+ ..+.++++|+.|++++|.+++..+..+..+..|+.++|++|.++++.+..+.+++.|
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKT-NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSS-CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred CCCCEEECCCCCCCccccccc-hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 555555555544222110000 111244555555555555555544455555555555555555555555555555444
Q ss_pred HHhhhhh
Q 045202 706 TARLKEA 712 (887)
Q Consensus 706 ~l~l~~n 712 (887)
.+++++|
T Consensus 527 ~L~L~~N 533 (606)
T 3t6q_A 527 YLNLASN 533 (606)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 4444444
No 4
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.4e-35 Score=343.23 Aligned_cols=257 Identities=17% Similarity=0.154 Sum_probs=204.0
Q ss_pred ccccccHHHHHHhHhcC-CCCeeEEEEEcCCCcchHHHHHHHHH----HHhcccceEEEccccHHHHhc--CCHHHHHHH
Q 045202 22 VGVELPMKEIESLLRSG-STNVCTLGIWGIGGIGKTTIAGAIFN----KISRHSAGSYFANNVREAEET--GRLGDLRQQ 94 (887)
Q Consensus 22 vGr~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~~~~~~~~s~~--~~~~~l~~~ 94 (887)
|||+.++++|.++|..+ ..++++|+|||||||||||||+++|+ +++.+|++++|+ +++.. ++...++++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv----~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWL----KDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEE----ECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEE----EECCCCCCCHHHHHHH
Confidence 59999999999999765 34689999999999999999999997 689999999999 34444 378899999
Q ss_pred HHHHHhcCCC--CCCCc-----ccchHHHHHhhCCc-eEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhh
Q 045202 95 LLSTLLNDGN--VKSFP-----NIGLNFQSKRLTRK-KVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTN 166 (887)
Q Consensus 95 il~~l~~~~~--~~~~~-----~~~~~~~~~~l~~k-k~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~ 166 (887)
++.++..... ...+. ......+++.|+++ |+||||||||+.+++ .+.. .+||+||||||++.++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9999976532 11222 22368889999996 999999999999876 2221 279999999999999988
Q ss_pred cC-CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHH--------hHhh-----cC
Q 045202 167 CG-VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAV--------FIIE-----IT 232 (887)
Q Consensus 167 ~~-~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L--------~~l~-----~~ 232 (887)
++ ...+|+|++|+.++||+||.++||+... .+++.+++++|+++|+|+|||++++|+.+ ..+. .+
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRG 359 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhccc
Confidence 75 4468999999999999999999987643 36788999999999999999999999542 2222 13
Q ss_pred CCce--EEEeeec------cccce-----------eecccchhhhHHH---Hhc-------------------------c
Q 045202 233 KCKI--EIKINLI------LLLIL-----------DIRMHADDELLMI---ASA-------------------------D 265 (887)
Q Consensus 233 ~~~i--~l~~sy~------k~~fl-----------~~a~~~~~~~~~~---l~~-------------------------~ 265 (887)
...+ ++++||+ |.||+ |||+||+++.+.+ ... .
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~ 439 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSK 439 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHHHHHHHHH
Confidence 4455 8999999 99999 9999998765331 001 0
Q ss_pred ----------CCceEeeCCchhhHHHHHHHHHhhhcc
Q 045202 266 ----------AYLNFFVHFATHMFHAMGREVVRQESI 292 (887)
Q Consensus 266 ----------~~~~i~mh~a~~ll~~~~~~iv~~~~~ 292 (887)
+...+.|| |+++++|++++.+++.
T Consensus 440 rsLl~~~~~~~~~~~~mH---dlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 440 RGALLSGKRMPVLTFKID---HIIHMFLKHVVDAQTI 473 (549)
T ss_dssp BSSCSEEECSSSCEEECC---HHHHHHHHTTSCTHHH
T ss_pred cCCeeEecCCCceEEEeC---hHHHHHHHHHHHHHHH
Confidence 12468999 9999999988877653
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-33 Score=334.22 Aligned_cols=387 Identities=18% Similarity=0.187 Sum_probs=292.6
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCC--CCCCCCCCccEEEcCCCCCccch-hhhcCCccC
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSL--PSNIHPEKLVLLKMPHSNIEQVF-DSVQHYLKL 392 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~l--p~~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L 392 (887)
++|+.|++.++.. ...-|..+.. ++|++|++++|.+..+ |..+.+++|++|++++|.++.++ ..+..+++|
T Consensus 105 ~~L~~L~L~~n~i-----~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 105 KALKHLFFIQTGI-----SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TTCCEEECTTSCC-----SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred ccccEeeccccCc-----ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 4555555554321 1111333444 6677777777777655 44446677777777777777663 556667777
Q ss_pred c--eeecCcCcCCCCCCCCc------------------------------------------------ccccC--CCCcE
Q 045202 393 N--QIITAAFNFFSKTPTPS------------------------------------------------LTQHL--NKLAI 420 (887)
Q Consensus 393 ~--~L~l~~~~~l~~~~~~~------------------------------------------------~~~~l--~~L~~ 420 (887)
+ .|++++|.... .++.. .+..+ .+|+.
T Consensus 180 ~~l~L~l~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 180 TNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CSEEEECTTCCCCE-ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred ceeEEecCCCccCc-cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 7 66777665322 11100 00011 15677
Q ss_pred EEecCCCCCCCCCCccC-CCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCC-cchhcCCCCcEEecccCCC
Q 045202 421 LNLSGRKNLQSLPARIH-LGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELP-SSIECLSKLLHLDLVDCKT 496 (887)
Q Consensus 421 L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~ 496 (887)
|++++|.+.+..+..+. +++|++|++++|. +..+|.... ++|++|++++|.+..++ ..+..+++|+.|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 77777776665555553 8888888888874 556776554 78888888888888764 4688888888888888887
Q ss_pred CccCCcc-cCCCCCCcEEEeeCCCCCCCC--chhhcCCCCCceeeccCccCccC-CccccCCCCCCEEEccccCCCcccc
Q 045202 497 LKSLPSG-LGKLKSLGILSIDGCSNLQRL--PEELGNLQALDSLHAVGTAITEV-PPSIVRLKRVRGIYLGRNRGLSLPI 572 (887)
Q Consensus 497 ~~~lp~~-l~~L~~L~~L~L~~~~~~~~~--p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~~~ 572 (887)
.+.+|.. +.++++|++|++++|.+.+.. |..++.+++|++|++++|.+..+ |..+..+++|+.|++++|.+.....
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 7666654 888899999999988876655 77788999999999999998855 5578899999999999998776555
Q ss_pred cccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCcc--cc--hhhhcCCCccEeeccccccccccCCCcc
Q 045202 573 TFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFER--IP--ESIIQLSNLKSLFIRYCERLQFLPKLPC 647 (887)
Q Consensus 573 ~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~~--lp--~~l~~l~~L~~L~L~~c~~l~~lp~lp~ 647 (887)
+..+..+++|+.|++++|.+.. .|..++.+++|++|++++|+++. +| ..+..+++|+.|+|++|... .+++
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~ 493 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS----SIDQ 493 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC----EECT
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC----ccCh
Confidence 5668899999999999999987 56788999999999999999984 33 57899999999999999743 3333
Q ss_pred cccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhhhhc
Q 045202 648 NLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEAREK 715 (887)
Q Consensus 648 ~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~ 715 (887)
..+.++++|+.|++++|.+++..+..+..+..+ .++|++|.++++.|..+..+++|+.+++++|...
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 444588999999999999999999999999999 9999999999999999999999999999998554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-33 Score=335.82 Aligned_cols=381 Identities=17% Similarity=0.142 Sum_probs=284.9
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCccEEEcCCCCCccch-hhhcCCccC
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSL-PSNI-HPEKLVLLKMPHSNIEQVF-DSVQHYLKL 392 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~n~i~~l~-~~~~~l~~L 392 (887)
++|+.|++.++. .....|..+.. ++|++|++++|.+..+ |..+ .+++|++|++++|.++.++ ..+..+++|
T Consensus 56 ~~L~~L~Ls~n~-----l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 56 SELQWLDLSRCE-----IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred ccCcEEeCCCCc-----ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 567777776543 22333455555 7777777777777766 4444 6777777777777777665 557777777
Q ss_pred ceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCcc----------------------------CCCCccEE
Q 045202 393 NQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARI----------------------------HLGLLKEL 444 (887)
Q Consensus 393 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~----------------------------~l~~L~~L 444 (887)
++|++++|.. .....|..++++++|++|++++|.+.+..|..+ ...+|++|
T Consensus 131 ~~L~L~~n~l-~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFI-HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CEEECCSSCC-CCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CEEeCCCCcc-cceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 7777777653 222234566777777777777776655433322 22356667
Q ss_pred EeecCCCC----------------------------------------------------------CCCccccc-CCccE
Q 045202 445 NLSGCSKL----------------------------------------------------------KRLPEISS-GNIET 465 (887)
Q Consensus 445 ~L~~~~~l----------------------------------------------------------~~lp~~~~-~~L~~ 465 (887)
++++|... ...|.+.. ++|+.
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 77665321 01122111 67888
Q ss_pred EEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCc
Q 045202 466 MRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAIT 545 (887)
Q Consensus 466 L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~ 545 (887)
|+++++.+..+| .+..+++|+.|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.++
T Consensus 290 L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 290 MSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred EEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 888888888888 788899999999999987 8888 45 8999999999998665544 5678899999999999888
Q ss_pred cC---CccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc--ccccCCCCCcEEEcCCCCCc-ccc
Q 045202 546 EV---PPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP--ESLGLLSSVRELHLNGNNFE-RIP 619 (887)
Q Consensus 546 ~l---p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l~-~lp 619 (887)
.+ |..+..+++|+.|+++.|.+.. +|..+..+++|+.|++++|.+.+++ ..+..+++|+.|++++|+++ ..|
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 65 7788899999999998888664 4567888999999999999888754 47888999999999999888 466
Q ss_pred hhhhcCCCccEeeccccccccc-cCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHH
Q 045202 620 ESIIQLSNLKSLFIRYCERLQF-LPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGAL 698 (887)
Q Consensus 620 ~~l~~l~~L~~L~L~~c~~l~~-lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~ 698 (887)
..+..+++|++|+|++|...+. +|. .+.++++|+.|++++|.+++..+..+..+..|+.|+|++|+++++.|..+
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 7788899999999999975442 332 23477899999999999999888888889999999999999999989889
Q ss_pred HHhHHHHHHhhhhhhhc
Q 045202 699 QKIQLLATARLKEAREK 715 (887)
Q Consensus 699 ~~l~~L~~l~l~~n~~~ 715 (887)
..+++|+.|++++|.+.
T Consensus 518 ~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCTTCCEEECTTSCCC
T ss_pred cCCCcCCEEECCCCcCc
Confidence 98999999999888544
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-34 Score=345.69 Aligned_cols=328 Identities=18% Similarity=0.192 Sum_probs=277.5
Q ss_pred CCCCccchhhhcCCccCceeecCcCcCCCC------------------CCCCcccc--cCCCCcEEEecCCCCCCCCCCc
Q 045202 376 HSNIEQVFDSVQHYLKLNQIITAAFNFFSK------------------TPTPSLTQ--HLNKLAILNLSGRKNLQSLPAR 435 (887)
Q Consensus 376 ~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~~--~l~~L~~L~L~~~~~~~~lp~~ 435 (887)
+|+++.+|..+.++++|++|++++|. +.+ +| ..++ ++++|++|+|++|.+.+.+|..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip--~~l~~~~l~~L~~L~L~~n~l~~~~p~~ 268 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKLPTF 268 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEECCTTCSSCCTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCc--hhhhhcccCCCCEEEecCCcCCccChHH
Confidence 45677788889999999999999988 444 43 3445 8999999999999999999988
Q ss_pred cC-CCCccEEEeecCCCCC--CCccccc--------CCccEEEccCCCCCCCCc--chhcCCCCcEEecccCCCCccCCc
Q 045202 436 IH-LGLLKELNLSGCSKLK--RLPEISS--------GNIETMRLDGTAPEELPS--SIECLSKLLHLDLVDCKTLKSLPS 502 (887)
Q Consensus 436 ~~-l~~L~~L~L~~~~~l~--~lp~~~~--------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~lp~ 502 (887)
+. +++|++|+|++|..+. .+|.... ++|++|++++|.+..+|. .++++++|+.|++++|.+.+.+|
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 85 9999999999987444 4665432 699999999999999999 89999999999999999888999
Q ss_pred ccCCCCCCcEEEeeCCCCCCCCchhhcCCCC-CceeeccCccCccCCccccCCC--CCCEEEccccCCCccccccccc--
Q 045202 503 GLGKLKSLGILSIDGCSNLQRLPEELGNLQA-LDSLHAVGTAITEVPPSIVRLK--RVRGIYLGRNRGLSLPITFSVD-- 577 (887)
Q Consensus 503 ~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~-L~~L~L~~n~i~~lp~~l~~l~--~L~~L~L~~n~~~~~~~~~~~~-- 577 (887)
.+.++++|++|++++|.+. .+|..+..+++ |++|++++|.++.+|..+..++ +|+.|++++|.+.. ..|..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT-TTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC-cchhhhccc
Confidence 8999999999999998876 88888999999 9999999999999998887755 89999999998654 3455565
Q ss_pred -----CCCcccEEecccCCCCCccccc-cCCCCCcEEEcCCCCCcccchhhhc--------CCCccEeeccccccccccC
Q 045202 578 -----GLQNLLDLSLNDCCIMELPESL-GLLSSVRELHLNGNNFERIPESIIQ--------LSNLKSLFIRYCERLQFLP 643 (887)
Q Consensus 578 -----~l~~L~~L~Ls~n~l~~lp~~~-~~l~~L~~L~L~~n~l~~lp~~l~~--------l~~L~~L~L~~c~~l~~lp 643 (887)
.+++|+.|+|++|.++++|..+ ..+++|++|+|++|+++.+|..+.. +++|+.|+|++|. +.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~----l~ 501 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK----LT 501 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC----CC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc----CC
Confidence 7789999999999999988764 4689999999999999999865433 2399999999997 33
Q ss_pred CCccccc-ccCccceEecccCCCCCCCCcchhhhhcccCcccC------CCCCCCcchhHHHHHhHHHHHHhhhhhhh
Q 045202 644 KLPCNLL-VGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKL------DPNDLGGIFKGALQKIQLLATARLKEARE 714 (887)
Q Consensus 644 ~lp~~l~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L------~~N~l~~i~~~~~~~l~~L~~l~l~~n~~ 714 (887)
.+|..+. .++++|+.|++++|.+++ .|..+..+..|+.|+| ++|.+.+.+|..+..+++|+.|+|++|.+
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 5666665 378999999999999999 5677778999999999 56888889999999999999999988844
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-33 Score=334.81 Aligned_cols=384 Identities=16% Similarity=0.145 Sum_probs=309.0
Q ss_pred CCCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCCccc-hhhhcCCcc
Q 045202 316 TPNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPS-NI-HPEKLVLLKMPHSNIEQV-FDSVQHYLK 391 (887)
Q Consensus 316 ~~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~ 391 (887)
.++++.|++.++. .....+..+.. ++|++|++++|.+..+++ .+ .+++|++|+|++|.++.+ |..+.++++
T Consensus 31 ~~~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNP-----LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEECCCCC-----cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 3689999998764 23334446666 999999999999998855 44 799999999999999988 688999999
Q ss_pred CceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCC-CCCCcc-CCCCccEEEeecCCCCCCCccccc--CC----c
Q 045202 392 LNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQ-SLPARI-HLGLLKELNLSGCSKLKRLPEISS--GN----I 463 (887)
Q Consensus 392 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~----L 463 (887)
|++|++++|.. ...+ +..++.+++|++|++++|.+.+ .+|..+ ++++|++|++++|......|..+. .+ +
T Consensus 106 L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 106 LENLVAVETKL-ASLE-SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp CCEEECTTSCC-CCSS-SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred CCEEEccCCcc-cccc-ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 99999999874 3333 2347899999999999999876 678877 499999999999864433232221 11 2
Q ss_pred cEEEccCCCCCCCCcc----------------------------------------------------------------
Q 045202 464 ETMRLDGTAPEELPSS---------------------------------------------------------------- 479 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~---------------------------------------------------------------- 479 (887)
.+|++++|.+..+|+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 2455554444433322
Q ss_pred -----------------hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 480 -----------------IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 480 -----------------i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
+..+++|+.|++++|.+ ..+| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC
T ss_pred hheeccccccccccccccccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC
Confidence 34456777777777764 5677 788999999999999988 8888 45 9999999999999
Q ss_pred cCccCCccccCCCCCCEEEccccCCCccc-ccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccc--
Q 045202 543 AITEVPPSIVRLKRVRGIYLGRNRGLSLP-ITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIP-- 619 (887)
Q Consensus 543 ~i~~lp~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-- 619 (887)
...... .+..+++|+.|++++|.+.... .+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++..++
T Consensus 339 ~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 339 KGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp SSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred cCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh
Confidence 554322 6779999999999999876443 366788999999999999999999999999999999999999999665
Q ss_pred hhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCC-CCcchhhhhcccCcccCCCCCCCcchhHHH
Q 045202 620 ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPN-SSESDFLDLYLSDNFKLDPNDLGGIFKGAL 698 (887)
Q Consensus 620 ~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~ 698 (887)
..+..+++|++|++++|......| ..+.++++|++|++++|.+++ ..+..+..+..|+.|+|++|.++++.|..+
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFD----GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCT----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred hhhhccccCCEEECcCCCCCccch----hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 478999999999999998554443 333478999999999999998 467888899999999999999999999999
Q ss_pred HHhHHHHHHhhhhhhhcC
Q 045202 699 QKIQLLATARLKEAREKI 716 (887)
Q Consensus 699 ~~l~~L~~l~l~~n~~~~ 716 (887)
.++++|+.|++++|...+
T Consensus 494 ~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTCTTCCEEECCSSCCSC
T ss_pred cccccCCEEECCCCcCCC
Confidence 999999999999986543
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.9e-34 Score=346.11 Aligned_cols=330 Identities=19% Similarity=0.184 Sum_probs=268.7
Q ss_pred CCCccchhhhcCCccCceeecCcCcCCCC-----------------CCCCcccccCCCCcEEEecCCCCCCCCCCccC-C
Q 045202 377 SNIEQVFDSVQHYLKLNQIITAAFNFFSK-----------------TPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-L 438 (887)
Q Consensus 377 n~i~~l~~~~~~l~~L~~L~l~~~~~l~~-----------------~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l 438 (887)
|+++.+|..+.++++|+.|+|++|..... +|..-.+..+++|++|+|++|.+.+.+|..+. +
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 56666888899999999999999884331 33321134899999999999999999998774 9
Q ss_pred CCccEEEeecCCCCC--CCccccc---------CCccEEEccCCCCCCCCc--chhcCCCCcEEecccCCCCccCCcccC
Q 045202 439 GLLKELNLSGCSKLK--RLPEISS---------GNIETMRLDGTAPEELPS--SIECLSKLLHLDLVDCKTLKSLPSGLG 505 (887)
Q Consensus 439 ~~L~~L~L~~~~~l~--~lp~~~~---------~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~lp~~l~ 505 (887)
++|++|+|++|..+. .+|..+. ++|++|+|++|.+..+|. .++++++|+.|+|++|.+. .+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 999999999987444 4665333 489999999999999999 8999999999999999876 888 899
Q ss_pred CCCCCcEEEeeCCCCCCCCchhhcCCCC-CceeeccCccCccCCccccCCCC--CCEEEccccCCCccc--cccccc--C
Q 045202 506 KLKSLGILSIDGCSNLQRLPEELGNLQA-LDSLHAVGTAITEVPPSIVRLKR--VRGIYLGRNRGLSLP--ITFSVD--G 578 (887)
Q Consensus 506 ~L~~L~~L~L~~~~~~~~~p~~l~~l~~-L~~L~L~~n~i~~lp~~l~~l~~--L~~L~L~~n~~~~~~--~~~~~~--~ 578 (887)
++++|+.|++++|.+. .+|..+..+++ |+.|++++|.++.+|..+..++. |+.|++++|.+.... ++..+. .
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 9999999999998877 88888999998 99999999999999988777654 999999999875421 122222 3
Q ss_pred CCcccEEecccCCCCCcccccc-CCCCCcEEEcCCCCCcccchhhhcC--------CCccEeeccccccccccCCCcccc
Q 045202 579 LQNLLDLSLNDCCIMELPESLG-LLSSVRELHLNGNNFERIPESIIQL--------SNLKSLFIRYCERLQFLPKLPCNL 649 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~lp~~~~-~l~~L~~L~L~~n~l~~lp~~l~~l--------~~L~~L~L~~c~~l~~lp~lp~~l 649 (887)
+++|+.|+|++|.++.+|..+. .+++|+.|+|++|+++.+|..+... ++|+.|+|++|+ +..+|..+
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~----L~~lp~~l 747 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK----LTSLSDDF 747 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC----CCCCCGGG
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC----CccchHHh
Confidence 4589999999999999887664 7899999999999999998765443 389999999996 33555655
Q ss_pred c-ccCccceEecccCCCCCCCCcchhhhhcccCcccCCC------CCCCcchhHHHHHhHHHHHHhhhhhhh
Q 045202 650 L-VGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDP------NDLGGIFKGALQKIQLLATARLKEARE 714 (887)
Q Consensus 650 ~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~------N~l~~i~~~~~~~l~~L~~l~l~~n~~ 714 (887)
. .++++|+.|++++|.++++ |..+..+..|+.|+|++ |.+.+.+|..+.++++|+.|+|++|.+
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred hhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 4 3789999999999999984 66677888999998866 788888899999999999999988855
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-33 Score=331.18 Aligned_cols=347 Identities=15% Similarity=0.104 Sum_probs=290.0
Q ss_pred ccCCCCC-CCeeEEEecCCCCCC------------------CCCCCC---CCCccEEEcCCCCCc-cchhhhcCCccCce
Q 045202 338 YFQVPGF-TEVRYLHWHRYPLKS------------------LPSNIH---PEKLVLLKMPHSNIE-QVFDSVQHYLKLNQ 394 (887)
Q Consensus 338 ~p~~~~~-~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~ 394 (887)
+|..++. ++|++|++++|.+.. +|..+. +++|++|+|++|.+. .+|..+.++++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 6777776 999999999999998 998864 999999999999876 56788999999999
Q ss_pred eecCcCcCCCCCCCCccccc------CCCCcEEEecCCCCCCCCCC--cc-CCCCccEEEeecCCCCCCCccccc-CCcc
Q 045202 395 IITAAFNFFSKTPTPSLTQH------LNKLAILNLSGRKNLQSLPA--RI-HLGLLKELNLSGCSKLKRLPEISS-GNIE 464 (887)
Q Consensus 395 L~l~~~~~l~~~~~~~~~~~------l~~L~~L~L~~~~~~~~lp~--~~-~l~~L~~L~L~~~~~l~~lp~~~~-~~L~ 464 (887)
|++++|+.+.+...|..++. +++|++|++++|.+. .+|. .+ ++++|++|+|++|...+.+|.+.. ++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 99999974443011233344 499999999999988 8888 66 599999999999876658883333 8999
Q ss_pred EEEccCCCCCCCCcchhcCCC-CcEEecccCCCCccCCcccCCCC--CCcEEEeeCCCCCCCCchhhc-------CCCCC
Q 045202 465 TMRLDGTAPEELPSSIECLSK-LLHLDLVDCKTLKSLPSGLGKLK--SLGILSIDGCSNLQRLPEELG-------NLQAL 534 (887)
Q Consensus 465 ~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~~~~lp~~l~~L~--~L~~L~L~~~~~~~~~p~~l~-------~l~~L 534 (887)
+|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+. .+++|
T Consensus 357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 999999999999999999999 999999999866 8898887655 899999999999999998888 88899
Q ss_pred ceeeccCccCccCCccc-cCCCCCCEEEccccCCCcccccccc-c-------CCCcccEEecccCCCCCcccccc--CCC
Q 045202 535 DSLHAVGTAITEVPPSI-VRLKRVRGIYLGRNRGLSLPITFSV-D-------GLQNLLDLSLNDCCIMELPESLG--LLS 603 (887)
Q Consensus 535 ~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~n~~~~~~~~~~~-~-------~l~~L~~L~Ls~n~l~~lp~~~~--~l~ 603 (887)
++|++++|.++.+|..+ ..+++|+.|++++|.+.. +|... . ++++|+.|+|++|.++.+|..+. .++
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 99999999999999865 469999999999999873 44332 2 23399999999999999999887 999
Q ss_pred CCcEEEcCCCCCcccchhhhcCCCccEeecccc------ccccccCCCcccccccCccceEecccCCCCCCCCcchhhhh
Q 045202 604 SVRELHLNGNNFERIPESIIQLSNLKSLFIRYC------ERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDL 677 (887)
Q Consensus 604 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c------~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l 677 (887)
+|+.|+|++|+++.+|..+..+++|+.|+|++| ...+.+| ..+ .+|++|+.|++++|.++.++.. +.
T Consensus 514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---~~l-~~l~~L~~L~Ls~N~l~~ip~~-~~-- 586 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP---EGI-TLCPSLTQLQIGSNDIRKVNEK-IT-- 586 (636)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC---TTG-GGCSSCCEEECCSSCCCBCCSC-CC--
T ss_pred CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh---HHH-hcCCCCCEEECCCCcCCccCHh-Hh--
Confidence 999999999999999999999999999999654 4344444 333 3789999999999999665444 33
Q ss_pred cccCcccCCCCCCCcchh
Q 045202 678 YLSDNFKLDPNDLGGIFK 695 (887)
Q Consensus 678 ~~l~~l~L~~N~l~~i~~ 695 (887)
..|+.++|++|++..+..
T Consensus 587 ~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 587 PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TTCCEEECCSCTTCEEEC
T ss_pred CcCCEEECcCCCCccccH
Confidence 688999999998877654
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.5e-33 Score=327.64 Aligned_cols=391 Identities=16% Similarity=0.152 Sum_probs=262.0
Q ss_pred CCCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCCccchh-hhcCCcc
Q 045202 316 TPNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPSN-I-HPEKLVLLKMPHSNIEQVFD-SVQHYLK 391 (887)
Q Consensus 316 ~~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~i~~l~~-~~~~l~~ 391 (887)
.++++.|++.++. .....|..+.. ++|++|++++|.+..+++. + .+++|++|+|++|.++.++. .+..+++
T Consensus 25 ~~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCccEEECcCCc-----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 3689999998764 23334566666 9999999999999988753 4 78999999999999998875 4899999
Q ss_pred CceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCC-cc-CCCCccEEEeecCCCCCCCccccc--CCccEEE
Q 045202 392 LNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPA-RI-HLGLLKELNLSGCSKLKRLPEISS--GNIETMR 467 (887)
Q Consensus 392 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~-~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~ 467 (887)
|++|++++|. +...+.+..+..+++|++|++++|...+.+|. .+ ++++|++|++++|......|.... ++|++|+
T Consensus 100 L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 100 LKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 9999999986 44344456778999999999999987777763 45 499999999999876655665544 7788888
Q ss_pred ccCCCCCCCCcch-hcCCCCcEEecccCCCCccC--Cc-----------------------------ccCCCCCCcEEEe
Q 045202 468 LDGTAPEELPSSI-ECLSKLLHLDLVDCKTLKSL--PS-----------------------------GLGKLKSLGILSI 515 (887)
Q Consensus 468 L~~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~l--p~-----------------------------~l~~L~~L~~L~L 515 (887)
+++|.+..+|..+ ..+++|+.|++++|.+.+.. |. .+..+++|+.|++
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 8888777777663 55778888888877655421 10 0112223333333
Q ss_pred eCCCCCCC-----------------------------------CchhhcCCCCCceeeccCccCccCCccc-cCCCCCCE
Q 045202 516 DGCSNLQR-----------------------------------LPEELGNLQALDSLHAVGTAITEVPPSI-VRLKRVRG 559 (887)
Q Consensus 516 ~~~~~~~~-----------------------------------~p~~l~~l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~ 559 (887)
++|...+. ++..+..+.+|+.|++++|.+..+|..+ ..+++|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 33322110 0011112245666666666666666655 35666666
Q ss_pred EEccccCCCcccc--cccccCCCcccEEecccCCCCCcc---ccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeecc
Q 045202 560 IYLGRNRGLSLPI--TFSVDGLQNLLDLSLNDCCIMELP---ESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIR 634 (887)
Q Consensus 560 L~L~~n~~~~~~~--~~~~~~l~~L~~L~Ls~n~l~~lp---~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 634 (887)
|++++|.+..... +..++.+++|+.|++++|.+++++ ..+..+++|++|++++|+++.+|..+..+++|++|+|+
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECT
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECC
Confidence 6666666543211 223455666666666666666654 23566666666666666666666666666666666666
Q ss_pred ccccccccCC-Cccccc-------------ccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHH
Q 045202 635 YCERLQFLPK-LPCNLL-------------VGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQK 700 (887)
Q Consensus 635 ~c~~l~~lp~-lp~~l~-------------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~ 700 (887)
+|. +..+|. +|+++. .++++|++|++++|.|+.++. ...+..|+.|+|++|+++++.+..+..
T Consensus 419 ~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 495 (549)
T 2z81_A 419 STG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDR 495 (549)
T ss_dssp TSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGG
T ss_pred CCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhc
Confidence 664 222221 122211 257888888888888886554 346778888888888888888888888
Q ss_pred hHHHHHHhhhhhhhc
Q 045202 701 IQLLATARLKEAREK 715 (887)
Q Consensus 701 l~~L~~l~l~~n~~~ 715 (887)
+++|+.+++++|...
T Consensus 496 l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 496 LTSLQKIWLHTNPWD 510 (549)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CcccCEEEecCCCcc
Confidence 888888888887543
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-31 Score=323.22 Aligned_cols=188 Identities=19% Similarity=0.169 Sum_probs=116.2
Q ss_pred CchhhcCCCCCceeeccCccCc-cCC-ccccCCCCCCEEEccccCCCc-------------------------ccccccc
Q 045202 524 LPEELGNLQALDSLHAVGTAIT-EVP-PSIVRLKRVRGIYLGRNRGLS-------------------------LPITFSV 576 (887)
Q Consensus 524 ~p~~l~~l~~L~~L~L~~n~i~-~lp-~~l~~l~~L~~L~L~~n~~~~-------------------------~~~~~~~ 576 (887)
.|..+..+++|+.|++++|.+. .+| ..+..+++|+.|++++|.+.. ...|..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~ 476 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence 3444455555555555555554 233 244444455555554443221 1334556
Q ss_pred cCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCcccch---------hhhcCCCccEeeccccccccccCCCc
Q 045202 577 DGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFERIPE---------SIIQLSNLKSLFIRYCERLQFLPKLP 646 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~---------~l~~l~~L~~L~L~~c~~l~~lp~lp 646 (887)
..+++|+.|++++|+++.+|. .+..+++|++|+|++|+++.++. .+.++++|+.|+|++|. +..+|
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~----l~~i~ 552 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG----FDEIP 552 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC----CCCCC
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC----CCCCC
Confidence 666677777777777666543 46666777777777776665421 25666777777777764 33455
Q ss_pred ccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHH-HhHHHHHHhhhhhhhc
Q 045202 647 CNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQ-KIQLLATARLKEAREK 715 (887)
Q Consensus 647 ~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~-~l~~L~~l~l~~n~~~ 715 (887)
...+.++++|+.|++++|.++++++..|..+..|+.++|++|.++++.+..+. .+++|+.+++++|...
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 55555777777777777777777777777777777777777777777777776 6777777777777443
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=336.16 Aligned_cols=386 Identities=16% Similarity=0.130 Sum_probs=215.3
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCC-CCCC-CCCC-CCCCccEEEcCCCCCccc-hhhhcCCcc
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYP-LKSL-PSNI-HPEKLVLLKMPHSNIEQV-FDSVQHYLK 391 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~-l~~l-p~~~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~ 391 (887)
++++.|+++++. .....|..+.. .+|++|++++|. ...+ |..+ .+++|++|+|++|.+..+ |..+.++++
T Consensus 24 ~~l~~LdLs~N~-----i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 24 NTTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp TTCCEEEEESCC-----CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCcCEEECCCCc-----CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 567777777653 22334555555 777777777773 3445 3344 677777777777777766 466777777
Q ss_pred CceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCC-Ccc-CCCCccEEEeecCCCCCCCccccc----C----
Q 045202 392 LNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLP-ARI-HLGLLKELNLSGCSKLKRLPEISS----G---- 461 (887)
Q Consensus 392 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp-~~~-~l~~L~~L~L~~~~~l~~lp~~~~----~---- 461 (887)
|++|++++|......+....+..+++|++|+|++|.+.+..| ..+ ++++|++|+|++|......+..+. +
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 777777777644444555556777777777777777665544 233 477777777777643322221111 1
Q ss_pred --------------------------CccEEEccCCCCC-CCCcchh---------------------------------
Q 045202 462 --------------------------NIETMRLDGTAPE-ELPSSIE--------------------------------- 481 (887)
Q Consensus 462 --------------------------~L~~L~L~~~~i~-~lp~~i~--------------------------------- 481 (887)
.|++|++++|.+. .+|..+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 2555665555433 1111111
Q ss_pred ---c--CCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccC-CccccCCC
Q 045202 482 ---C--LSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEV-PPSIVRLK 555 (887)
Q Consensus 482 ---~--l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~ 555 (887)
. .++|+.|+|++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..+ |..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 1 14566666666665555566666666666666666666666666666666666666666666644 44566666
Q ss_pred CCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEE--------------------cCCCCC
Q 045202 556 RVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELH--------------------LNGNNF 615 (887)
Q Consensus 556 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~--------------------L~~n~l 615 (887)
+|+.|++++|.+.... +..+.++++|+.|+|++|.++.++. +++|+.|+ +++|++
T Consensus 339 ~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQ-DQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp TCCEEECCSCCCCCCC-SSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCccC-hhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeecccCcc
Confidence 6666666666554322 3345566666666666666554332 23333333 333333
Q ss_pred cccc--hhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCC-----CCcchhhhhcccCcccCCCC
Q 045202 616 ERIP--ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPN-----SSESDFLDLYLSDNFKLDPN 688 (887)
Q Consensus 616 ~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~-----~~~~~~~~l~~l~~l~L~~N 688 (887)
+.++ ..+..+++|+.|+|++|+.....+. .....+++|+.|++++|.++. ..+..|..+..|+.|+|++|
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGD---QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSS---SSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccc---cccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 3222 1234667777777777653221111 011134555555555555542 22233444555555555555
Q ss_pred CCCcchhHHHHHhHHHHHHhhhhhhhc
Q 045202 689 DLGGIFKGALQKIQLLATARLKEAREK 715 (887)
Q Consensus 689 ~l~~i~~~~~~~l~~L~~l~l~~n~~~ 715 (887)
.++++.+.+|.++++|+.|+|++|.+.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred cccccChhHccchhhhheeECCCCCCC
Confidence 555555555555555555555555443
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-32 Score=332.50 Aligned_cols=363 Identities=15% Similarity=0.088 Sum_probs=297.9
Q ss_pred ccCCCCC-CCeeEEEecCCCCCC------------------CCCCC---CCCCccEEEcCCCCCc-cchhhhcCCccCce
Q 045202 338 YFQVPGF-TEVRYLHWHRYPLKS------------------LPSNI---HPEKLVLLKMPHSNIE-QVFDSVQHYLKLNQ 394 (887)
Q Consensus 338 ~p~~~~~-~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~n~i~-~l~~~~~~l~~L~~ 394 (887)
+|..++. ++|++|++++|.+.. +|..+ .+++|++|+|++|.+. .+|..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 7877777 999999999999998 99986 5999999999999865 66888999999999
Q ss_pred eecCcCcCCCC--CCCC-----cccccCCCCcEEEecCCCCCCCCCC--cc-CCCCccEEEeecCCCCCCCccccc-CCc
Q 045202 395 IITAAFNFFSK--TPTP-----SLTQHLNKLAILNLSGRKNLQSLPA--RI-HLGLLKELNLSGCSKLKRLPEISS-GNI 463 (887)
Q Consensus 395 L~l~~~~~l~~--~~~~-----~~~~~l~~L~~L~L~~~~~~~~lp~--~~-~l~~L~~L~L~~~~~l~~lp~~~~-~~L 463 (887)
|++++|+.+.+ +|.. ..+..+++|+.|+|++|.+. .+|. .+ ++++|++|+|++|... .+|.+.. ++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcc
Confidence 99999974543 3220 12235569999999999988 8888 66 5999999999998654 8884444 899
Q ss_pred cEEEccCCCCCCCCcchhcCCC-CcEEecccCCCCccCCcccCCCCC--CcEEEeeCCCCCCCCchh---hc--CCCCCc
Q 045202 464 ETMRLDGTAPEELPSSIECLSK-LLHLDLVDCKTLKSLPSGLGKLKS--LGILSIDGCSNLQRLPEE---LG--NLQALD 535 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~~l~~-L~~L~L~~~~~~~~lp~~l~~L~~--L~~L~L~~~~~~~~~p~~---l~--~l~~L~ 535 (887)
+.|+|++|.+..+|.++..+++ |+.|+|++|.+. .+|..+..++. |+.|++++|.+.+.+|.. ++ .+++|+
T Consensus 598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred eEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 9999999999999999999999 999999999866 88988877754 999999999988766643 23 345899
Q ss_pred eeeccCccCccCCcccc-CCCCCCEEEccccCCCccccccccc--------CCCcccEEecccCCCCCcccccc--CCCC
Q 045202 536 SLHAVGTAITEVPPSIV-RLKRVRGIYLGRNRGLSLPITFSVD--------GLQNLLDLSLNDCCIMELPESLG--LLSS 604 (887)
Q Consensus 536 ~L~L~~n~i~~lp~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~--------~l~~L~~L~Ls~n~l~~lp~~~~--~l~~ 604 (887)
.|++++|.+..+|..+. .+++|+.|+|++|.+. .+|..+. ++++|+.|+|++|+++.+|..+. .+++
T Consensus 677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754 (876)
T ss_dssp EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT
T ss_pred EEEccCCcCCccCHHHHccCCCCCEEECCCCcCC--ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC
Confidence 99999999999998765 8999999999999987 4444332 33499999999999999999987 9999
Q ss_pred CcEEEcCCCCCcccchhhhcCCCccEeecccc------ccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhc
Q 045202 605 VRELHLNGNNFERIPESIIQLSNLKSLFIRYC------ERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLY 678 (887)
Q Consensus 605 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c------~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~ 678 (887)
|+.|+|++|+++.+|..+..+++|+.|+|++| ...+.+| ..+ .+|++|+.|++++|.+..++.. +. .
T Consensus 755 L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip---~~l-~~L~~L~~L~Ls~N~L~~Ip~~-l~--~ 827 (876)
T 4ecn_A 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP---TGI-TTCPSLIQLQIGSNDIRKVDEK-LT--P 827 (876)
T ss_dssp CCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC---TTG-GGCSSCCEEECCSSCCCBCCSC-CC--S
T ss_pred cCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccCh---HHH-hcCCCCCEEECCCCCCCccCHh-hc--C
Confidence 99999999999999999999999999999874 4344444 333 3789999999999999555444 33 5
Q ss_pred ccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhh
Q 045202 679 LSDNFKLDPNDLGGIFKGALQKIQLLATARLKEA 712 (887)
Q Consensus 679 ~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n 712 (887)
.|+.|+|++|++..+.+..+.....+..+.|..|
T Consensus 828 ~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n 861 (876)
T 4ecn_A 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861 (876)
T ss_dssp SSCEEECCSCTTCEEECGGGHHHHHTTCCEEECC
T ss_pred CCCEEECCCCCCCccChHHccccccchheeecCC
Confidence 8999999999999998877766554444444433
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=324.10 Aligned_cols=246 Identities=19% Similarity=0.201 Sum_probs=194.6
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
++|++|++++|.+..+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++|......+. ..+++|++|+++
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 355 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS 355 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence 56777777777777777777666 7777777776644 5554 3677777777777776655554 678889999999
Q ss_pred CccCccC---CccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc--ccccCCCCCcEEEcCCCCC
Q 045202 541 GTAITEV---PPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP--ESLGLLSSVRELHLNGNNF 615 (887)
Q Consensus 541 ~n~i~~l---p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l 615 (887)
+|.++.. |..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+.+.+ ..+..+++|++|++++|.+
T Consensus 356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred CCccCccccccccccccCccCEEECCCCcccc--ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 9988855 5678889999999998888664 3444888999999999999888754 4678899999999999988
Q ss_pred c-ccchhhhcCCCccEeeccccccc-cccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcc
Q 045202 616 E-RIPESIIQLSNLKSLFIRYCERL-QFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 616 ~-~lp~~l~~l~~L~~L~L~~c~~l-~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i 693 (887)
. ..|..+..+++|++|+|++|... +.+|. .+.+|++|+.|++++|.+++..+..+..+..|+.++|++|.++++
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchh----hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 8 45677888999999999999754 34442 224789999999999999998888888999999999999999999
Q ss_pred hhHHHHHhHHHHHHhhhhhhhcCCC
Q 045202 694 FKGALQKIQLLATARLKEAREKISY 718 (887)
Q Consensus 694 ~~~~~~~l~~L~~l~l~~n~~~~~~ 718 (887)
.+..|..+++|+.+++++|...+..
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CHHHhhcccCCcEEEecCCcccCCC
Confidence 9888889999999999888665433
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-31 Score=323.91 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=37.6
Q ss_pred CccEEEccCCCCCCCC-cchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeC
Q 045202 462 NIETMRLDGTAPEELP-SSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDG 517 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~ 517 (887)
+|++|++++|.+..++ ..++.+++|+.|++++|.+.+..|..+.++++|++|++++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 4788888888777665 3477788888888888776666665555555555555544
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=336.11 Aligned_cols=386 Identities=15% Similarity=0.133 Sum_probs=272.6
Q ss_pred CCccEEEeeccccccCccceec-cCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCccEEEcCCCCCcc-chhh--hcCC
Q 045202 317 PNLRILKFYRSMNEENKCKVSY-FQVPGF-TEVRYLHWHRYPLKSL-PSNI-HPEKLVLLKMPHSNIEQ-VFDS--VQHY 389 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~-p~~~~~-~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~n~i~~-l~~~--~~~l 389 (887)
++|+.|++.++. ....+ |..+.. ++|++|++++|.+..+ |..+ .+.+|++|+|++|.+.. ++.. +.++
T Consensus 48 ~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 48 EQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred ccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 578888887652 12233 566666 8888888888888766 4455 78888888888888875 3433 7788
Q ss_pred ccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccC---------------------------CC---
Q 045202 390 LKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH---------------------------LG--- 439 (887)
Q Consensus 390 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~---------------------------l~--- 439 (887)
++|++|++++|.. ...+.+..++++++|++|+|++|.+.+..|..+. ++
T Consensus 123 ~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 8888888888763 3344445667888888888888776554443221 12
Q ss_pred ---CccEEEeecCCCCCCCccc----------------------------------------ccCCccEEEccCCCCCCC
Q 045202 440 ---LLKELNLSGCSKLKRLPEI----------------------------------------SSGNIETMRLDGTAPEEL 476 (887)
Q Consensus 440 ---~L~~L~L~~~~~l~~lp~~----------------------------------------~~~~L~~L~L~~~~i~~l 476 (887)
+|++|++++|......+.. ...+|+.|++++|.+..+
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 2777888777422211110 015799999999999876
Q ss_pred C-cchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCc-cccCC
Q 045202 477 P-SSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRL 554 (887)
Q Consensus 477 p-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l 554 (887)
+ ..+..+++|+.|+|++|.+.+..|..|.++++|++|++++|.+.+..|..+..+++|+.|++++|.+..++. .+..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 5 458999999999999999888888899999999999999999888889999999999999999999998766 68889
Q ss_pred CCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc----------------------cccCCCCCcEEEcCC
Q 045202 555 KRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE----------------------SLGLLSSVRELHLNG 612 (887)
Q Consensus 555 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~----------------------~~~~l~~L~~L~L~~ 612 (887)
++|+.|++++|.+.... .+++|+.|++++|.++.+|. .+..+++|+.|+|++
T Consensus 362 ~~L~~L~Ls~N~l~~i~------~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CCCCEEEEETCCSCCCS------SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred CCCCEEECCCCCCCccc------CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 99999999999876432 13444444444444433322 244678888888888
Q ss_pred CCCcccch--hhhcCCCccEeeccccccccccC-CCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCC
Q 045202 613 NNFERIPE--SIIQLSNLKSLFIRYCERLQFLP-KLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPND 689 (887)
Q Consensus 613 n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp-~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~ 689 (887)
|+++.++. .+..+++|+.|+|++|......+ ..++..+.++++|+.|++++|.++++++..|..+..|+.|+|++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 88875543 24557778888888775332111 2222333466777777777777777777777777777777777777
Q ss_pred CCcchhHHHHHhHHHHHHhhhhhhhcC
Q 045202 690 LGGIFKGALQKIQLLATARLKEAREKI 716 (887)
Q Consensus 690 l~~i~~~~~~~l~~L~~l~l~~n~~~~ 716 (887)
++++.+..+. ++|+.|+|++|.+.+
T Consensus 516 l~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 516 LTVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp CSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred CCccChhhhh--ccccEEECCCCcCCC
Confidence 7777666554 566677777775554
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=2.8e-32 Score=312.99 Aligned_cols=362 Identities=15% Similarity=0.168 Sum_probs=250.7
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccc-hhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCC
Q 045202 348 RYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQV-FDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGR 426 (887)
Q Consensus 348 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 426 (887)
+.++++++.++.+|. -+++|++|+|++|.++.+ +..+..+++|++|++++|..... .++..+..+++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCC
Confidence 356777778888887 457888888888888877 46788888888888888764322 23456678888888888888
Q ss_pred CCCCCCCCccC-CCCccEEEeecCCCCCCCccc--cc--CCccEEEccCCCCCCC-Ccc-hhcCCCCcEEecccCCCCcc
Q 045202 427 KNLQSLPARIH-LGLLKELNLSGCSKLKRLPEI--SS--GNIETMRLDGTAPEEL-PSS-IECLSKLLHLDLVDCKTLKS 499 (887)
Q Consensus 427 ~~~~~lp~~~~-l~~L~~L~L~~~~~l~~lp~~--~~--~~L~~L~L~~~~i~~l-p~~-i~~l~~L~~L~L~~~~~~~~ 499 (887)
.+.+..|..+. +++|++|+|++|......+.. +. ++|++|+|++|.+..+ |.. +.++++|++|++++|.+.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 88777777774 888888888887654433332 22 7888888888888877 444 78888888888888888777
Q ss_pred CCcccCCC--CCCcEEEeeCCCCCCCCchh--------hcCCCCCceeeccCccCc-cCCccccC---CCCCCEEEcccc
Q 045202 500 LPSGLGKL--KSLGILSIDGCSNLQRLPEE--------LGNLQALDSLHAVGTAIT-EVPPSIVR---LKRVRGIYLGRN 565 (887)
Q Consensus 500 lp~~l~~L--~~L~~L~L~~~~~~~~~p~~--------l~~l~~L~~L~L~~n~i~-~lp~~l~~---l~~L~~L~L~~n 565 (887)
.|..+..+ .+|+.|++++|.+....+.. +..+++|++|++++|.+. ..|..+.. .++|+.|+++.|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 77777665 67888888887766544332 235677888888888777 34444433 367777777665
Q ss_pred CCCcccc---------ccccc--CCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCccc-chhhhcCCCccEee
Q 045202 566 RGLSLPI---------TFSVD--GLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLF 632 (887)
Q Consensus 566 ~~~~~~~---------~~~~~--~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~ 632 (887)
......+ +..+. ..++|+.|++++|.+++ .|..++.+++|++|+|++|+++.+ |..+..+++|++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 4322110 01111 22567777777777776 456677777777777777777755 45677777777777
Q ss_pred ccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhh
Q 045202 633 IRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEA 712 (887)
Q Consensus 633 L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n 712 (887)
|++|. +..+++..+.++++|+.|++++|.+++..+..+..+..|+.|+|++|.++++.+..+..+++|+.+++++|
T Consensus 330 Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 330 LSQNF----LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCSSC----CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCc----cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 77775 33333344446677777777777777777777777777777777777777777766777777777777777
Q ss_pred hhcC
Q 045202 713 REKI 716 (887)
Q Consensus 713 ~~~~ 716 (887)
...+
T Consensus 406 ~l~~ 409 (455)
T 3v47_A 406 PWDC 409 (455)
T ss_dssp CBCC
T ss_pred Cccc
Confidence 5443
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=9.7e-32 Score=314.02 Aligned_cols=140 Identities=15% Similarity=0.084 Sum_probs=106.1
Q ss_pred cEEEeeccccccCccceeccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCCccc-hhhhcCCccCceee
Q 045202 320 RILKFYRSMNEENKCKVSYFQVPGFTEVRYLHWHRYPLKSLPSN-I-HPEKLVLLKMPHSNIEQV-FDSVQHYLKLNQII 396 (887)
Q Consensus 320 r~L~l~~~~~~~~~~~~~~p~~~~~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~ 396 (887)
+.+++.++. -..+|..+. +++++|++++|.+..+++. + .+++|++|+|++|.++.+ +..+..+++|++|+
T Consensus 3 ~~l~ls~n~------l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 3 FLVDRSKNG------LIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CEEECTTSC------CSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred ceEecCCCC------ccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 456665542 224665544 8899999999999888753 3 789999999999999988 57889999999999
Q ss_pred cCcCcCCCCCCCCcccccCCCCcEEEecCCCCCC-CCCCccC-CCCccEEEeecCCCCCCCccccc-CCc--cEEEccCC
Q 045202 397 TAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQ-SLPARIH-LGLLKELNLSGCSKLKRLPEISS-GNI--ETMRLDGT 471 (887)
Q Consensus 397 l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~-~~L--~~L~L~~~ 471 (887)
+++|. +..+|.. .+++|++|+|++|.+.+ .+|..+. +++|++|++++|.... ..+.. .+| ++|++++|
T Consensus 76 Ls~N~-l~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 76 LSHNK-LVKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCSSC-CCEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEEC
T ss_pred cCCCc-eeecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecc
Confidence 99986 3444432 78999999999999877 5777774 9999999999976432 12222 566 99999998
Q ss_pred CC
Q 045202 472 AP 473 (887)
Q Consensus 472 ~i 473 (887)
.+
T Consensus 149 ~l 150 (520)
T 2z7x_B 149 ET 150 (520)
T ss_dssp TT
T ss_pred cc
Confidence 87
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.4e-32 Score=318.32 Aligned_cols=379 Identities=15% Similarity=0.111 Sum_probs=218.0
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCCccch-hhhcCCccC
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPSN-I-HPEKLVLLKMPHSNIEQVF-DSVQHYLKL 392 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~i~~l~-~~~~~l~~L 392 (887)
++++.|++.++. .....+..+.. ++|++|++++|.+..++.. + .+++|++|+|++|.++.++ ..+..+++|
T Consensus 28 ~~l~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCC-----CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCCc-----cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 568888887653 22223345555 8888888888888877654 3 6888888888888888776 678888888
Q ss_pred ceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCC-CCCCccC-CCCccEEEeecCCCCCCCccccc--CCc----c
Q 045202 393 NQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQ-SLPARIH-LGLLKELNLSGCSKLKRLPEISS--GNI----E 464 (887)
Q Consensus 393 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~--~~L----~ 464 (887)
++|++++|. +...+. ..++.+++|++|++++|.+.+ .+|..+. +++|++|++++|......|..+. .+| +
T Consensus 103 ~~L~L~~n~-l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 103 QKLVAVETN-LASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CEEECTTSC-CCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccc-cccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 888888876 333332 236788888888888888766 4677774 88888888888754333333222 555 6
Q ss_pred EEEccCCCCCCCCcchhcCCCCcEEecccCC-------------------------------------------------
Q 045202 465 TMRLDGTAPEELPSSIECLSKLLHLDLVDCK------------------------------------------------- 495 (887)
Q Consensus 465 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~------------------------------------------------- 495 (887)
.|++++|.+..+++......+|+.|++++|.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 7788888777666543333356666665541
Q ss_pred ---------CCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccC
Q 045202 496 ---------TLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNR 566 (887)
Q Consensus 496 ---------~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~ 566 (887)
..+..|..+..+++|++|++++|.+. .+|..+..+ +|+.|++++|.+..+|. ..+++|+.|++++|.
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCc
Confidence 12234455566677777777776544 466666666 77777777777666655 244455555554443
Q ss_pred CCcccccccccCCCcccEEecccCCCCCc---cccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccC
Q 045202 567 GLSLPITFSVDGLQNLLDLSLNDCCIMEL---PESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLP 643 (887)
Q Consensus 567 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l---p~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 643 (887)
+... .+ ...+++|+.|++++|.++.+ |..+..+++|++|++++|.++.+|..+..+++|++|++++|...+..|
T Consensus 337 ~~~~-~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 337 GGNA-FS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp SCCB-CC--CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT
T ss_pred cccc-cc--cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc
Confidence 2211 11 13445555555555555442 344445555555555555555444444555555555555554222111
Q ss_pred CCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCC-cchhHHHHHhHHHHHHhhhhh
Q 045202 644 KLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLG-GIFKGALQKIQLLATARLKEA 712 (887)
Q Consensus 644 ~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~-~i~~~~~~~l~~L~~l~l~~n 712 (887)
...+.++++|++|++++|.+.+..+..+..+..|+.|+|++|.++ +..|..+..+++|+.|++++|
T Consensus 414 ---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 414 ---FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp ---SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ---hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 111123444444444444444444444444444444444444443 233344444444444444444
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.3e-30 Score=299.68 Aligned_cols=342 Identities=20% Similarity=0.263 Sum_probs=249.5
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEec
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLS 424 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 424 (887)
.+++.|++.++.++.+|....+++|++|++++|.++.++. +..+++|+.|++++|.. ...+. +..+++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~---~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITP---LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG---GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-ccChh---hcCCCCCCEEECC
Confidence 4577777777777777764467788888888888877766 77778888888877653 22222 6777888888888
Q ss_pred CCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcc
Q 045202 425 GRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSG 503 (887)
Q Consensus 425 ~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~ 503 (887)
+|.+.+. |...++++|++|++++|. +..++.+.. ++|++|+++ +.+..+++ +.++++|+.|++++|.+.. ++ .
T Consensus 121 ~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~ 194 (466)
T 1o6v_A 121 NNQITDI-DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD-IS-V 194 (466)
T ss_dssp SSCCCCC-GGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC-CG-G
T ss_pred CCCCCCC-hHHcCCCCCCEEECCCCc-cCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC-Ch-h
Confidence 8765543 333358888888888764 444555444 778888876 44555544 7788888888888877443 33 3
Q ss_pred cCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCccc
Q 045202 504 LGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLL 583 (887)
Q Consensus 504 l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 583 (887)
+..+++|++|++++|.+.+..| ++.+++|+.|++++|.++.++ .+..+++|+.|++++|.+.... . +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA--P-LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch--h-hhcCCCCC
Confidence 7788888888888887666554 667888888888888887764 5778888888888888766432 2 77788888
Q ss_pred EEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccC
Q 045202 584 DLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIR 663 (887)
Q Consensus 584 ~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~ 663 (887)
.|++++|.+++++. +..+++|+.|++++|+++.++. +..+++|+.|+|++|...+ .++ ...+++|+.|++++
T Consensus 269 ~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~----~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 269 ELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD----ISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC----CGG--GGGCTTCCEEECCS
T ss_pred EEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC----chh--hccCccCCEeECCC
Confidence 88888888888766 7788888888888888887775 7788888888888886332 222 23678888888888
Q ss_pred CCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhhhhc
Q 045202 664 RFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEAREK 715 (887)
Q Consensus 664 N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~ 715 (887)
|.+++. ..+..+..|+.+++++|.++++.| +..++.|+.+++++|...
T Consensus 341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 888876 456677888888888888888877 677777777777776443
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=302.91 Aligned_cols=377 Identities=14% Similarity=0.115 Sum_probs=224.8
Q ss_pred CCCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCC-CCCC-CCCCccEEEcCCCCCccchhhhcCCccC
Q 045202 316 TPNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSL-PSNI-HPEKLVLLKMPHSNIEQVFDSVQHYLKL 392 (887)
Q Consensus 316 ~~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L 392 (887)
.++++.|++.++.. ....|..+.. ++|++|++++|.+..+ |..+ .+++|++|+|++|.++.+|.. .+++|
T Consensus 20 ~~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 20 SQKTTILNISQNYI-----SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp CTTCSEEECCSSCC-----CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred cccccEEECCCCcc-----cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 37899999987642 2222344555 8899999999999887 4445 789999999999999988866 89999
Q ss_pred ceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCc--cEEEeecCCC--CCCCccccc--------
Q 045202 393 NQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLL--KELNLSGCSK--LKRLPEISS-------- 460 (887)
Q Consensus 393 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L--~~L~L~~~~~--l~~lp~~~~-------- 460 (887)
++|++++|. +...+.|..++.+++|++|++++|.+.+. ....+++| ++|++++|.. ....|..+.
T Consensus 93 ~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 93 KHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp SEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred cEEeccCCc-cccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEeecccccccccccccccccccceEE
Confidence 999999987 44445567788999999999999987652 12246777 9999999865 232222211
Q ss_pred --------------------CCccEEEccCCC-------CCCCCcchhc---------------------------CCCC
Q 045202 461 --------------------GNIETMRLDGTA-------PEELPSSIEC---------------------------LSKL 486 (887)
Q Consensus 461 --------------------~~L~~L~L~~~~-------i~~lp~~i~~---------------------------l~~L 486 (887)
++|+.|++++|. +....+.++. +++|
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 334444444432 1000011222 2355
Q ss_pred cEEecccCCCCccCCccc-----CCCCCCcEEEeeCCCCCCCCc-hhhcCC---CCCceeeccCccCccCCccccCCCCC
Q 045202 487 LHLDLVDCKTLKSLPSGL-----GKLKSLGILSIDGCSNLQRLP-EELGNL---QALDSLHAVGTAITEVPPSIVRLKRV 557 (887)
Q Consensus 487 ~~L~L~~~~~~~~lp~~l-----~~L~~L~~L~L~~~~~~~~~p-~~l~~l---~~L~~L~L~~n~i~~lp~~l~~l~~L 557 (887)
+.|++++|.+.+.+|..+ .++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+...+. ...+++|
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L 326 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPF 326 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCC
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcc
Confidence 556666665555666655 6666666666666555 344 233222 334444554444443321 1455666
Q ss_pred CEEEccccCCCcccccccccCCCcccEEecccCCCCC---ccccccCCCCCcEEEcCCCCCcc-cchh-hhcCCCccEee
Q 045202 558 RGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME---LPESLGLLSSVRELHLNGNNFER-IPES-IIQLSNLKSLF 632 (887)
Q Consensus 558 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~---lp~~~~~l~~L~~L~L~~n~l~~-lp~~-l~~l~~L~~L~ 632 (887)
++|++++|.+.. ..|..+..+++|+.|++++|.+++ +|..++.+++|++|++++|+++. +|.. +..+++|++|+
T Consensus 327 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 327 LHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred cEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 666666665443 234445666666666666666664 33455666666666666666664 5543 45566666666
Q ss_pred ccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhh
Q 045202 633 IRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEA 712 (887)
Q Consensus 633 L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n 712 (887)
|++|...+.+|. .+ .++|+.|++++|.++.++...+ .+..|+.++|++|.++.+.+..+..+++|+.+++++|
T Consensus 406 Ls~N~l~~~~~~---~l---~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 406 MSSNILTDTIFR---CL---PPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCSSCCCGGGGG---SC---CTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCCCCcchhh---hh---cccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 666654333321 11 1456666666666664333332 5566666666666666555544555556666666555
Q ss_pred h
Q 045202 713 R 713 (887)
Q Consensus 713 ~ 713 (887)
.
T Consensus 479 ~ 479 (520)
T 2z7x_B 479 P 479 (520)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=6.7e-30 Score=301.15 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=97.8
Q ss_pred cEEEeeccccccCccceeccCCCCCCCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCCccc-hhhhcCCccCceee
Q 045202 320 RILKFYRSMNEENKCKVSYFQVPGFTEVRYLHWHRYPLKSLPS-NI-HPEKLVLLKMPHSNIEQV-FDSVQHYLKLNQII 396 (887)
Q Consensus 320 r~L~l~~~~~~~~~~~~~~p~~~~~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~ 396 (887)
+.+++.++. -..+|..+. ++++.|++++|.+..+|+ .+ .+++|++|+|++|.++.+ +..+..+++|++|+
T Consensus 34 ~~l~ls~~~------L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 34 SMVDYSNRN------LTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CEEECTTSC------CCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cEEEcCCCC------CccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 667776542 123555433 778888888888888874 34 788888888888888887 46688888888888
Q ss_pred cCcCcCCCCCCCCcccccCCCCcEEEecCCCCCC-CCCCcc-CCCCccEEEeecCCCCCCCcccccCCc--cEEEccCCC
Q 045202 397 TAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQ-SLPARI-HLGLLKELNLSGCSKLKRLPEISSGNI--ETMRLDGTA 472 (887)
Q Consensus 397 l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~~~L--~~L~L~~~~ 472 (887)
+++|. +..++.. .+++|++|++++|.+.+ .+|..+ ++++|++|+|++|.... .......+| ++|++++|.
T Consensus 107 Ls~N~-l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNR-LQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSC-CCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEESS
T ss_pred CCCCc-CCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-CchhhhhhceeeEEEeeccc
Confidence 88876 3444432 68888888888888765 345556 48888888888865332 111111455 888888887
Q ss_pred C
Q 045202 473 P 473 (887)
Q Consensus 473 i 473 (887)
+
T Consensus 181 l 181 (562)
T 3a79_B 181 Y 181 (562)
T ss_dssp C
T ss_pred c
Confidence 7
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.3e-29 Score=289.32 Aligned_cols=344 Identities=18% Similarity=0.235 Sum_probs=289.1
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCcee
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQI 395 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L 395 (887)
++++.|.+.++.. ..+|. +.. ++|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|++|
T Consensus 46 ~~l~~L~l~~~~i------~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGI------KSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCC------CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCC------ccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 3688898876431 23443 444 9999999999999999885589999999999999999877 9999999999
Q ss_pred ecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCC
Q 045202 396 ITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPE 474 (887)
Q Consensus 396 ~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~ 474 (887)
++++|. +...+. +..+++|++|++++|.+.+ +|....+++|++|++++ .+..++.+.. ++|++|++++|.+.
T Consensus 118 ~L~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQ-ITDIDP---LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSC-CCCCGG---GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCC-CCCChH---HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCcCC
Confidence 999986 444432 7899999999999998654 55544699999999975 3444554444 89999999999999
Q ss_pred CCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCC
Q 045202 475 ELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRL 554 (887)
Q Consensus 475 ~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l 554 (887)
.++. +..+++|+.|++++|.+.+..| ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+..+++ +..+
T Consensus 191 ~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l 264 (466)
T 1o6v_A 191 DISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGL 264 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred CChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcC
Confidence 8864 8999999999999998776655 77899999999999986653 468899999999999999998876 8999
Q ss_pred CCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeecc
Q 045202 555 KRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIR 634 (887)
Q Consensus 555 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 634 (887)
++|+.|++++|.+... +. +..+++|+.|++++|.+.+++. ++.+++|+.|++++|+++.++. +..+++|+.|+++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 265 TKLTELKLGANQISNI--SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp TTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECC
T ss_pred CCCCEEECCCCccCcc--cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECC
Confidence 9999999999988754 33 7899999999999999999776 7899999999999999998775 8899999999999
Q ss_pred ccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcch
Q 045202 635 YCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIF 694 (887)
Q Consensus 635 ~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~ 694 (887)
+|+. ..++ ...+|++|+.|++++|.+++..+ +..+..++.+++++|.++++.
T Consensus 340 ~n~l-~~~~-----~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 340 NNKV-SDVS-----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp SSCC-CCCG-----GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CCcc-CCch-----hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 9963 2332 12489999999999999999876 778999999999999998863
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.5e-30 Score=302.97 Aligned_cols=358 Identities=17% Similarity=0.164 Sum_probs=248.1
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCCccc--hhhhcCCcc
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPSN-I-HPEKLVLLKMPHSNIEQV--FDSVQHYLK 391 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~i~~l--~~~~~~l~~ 391 (887)
++|+.|++.++. .....|..+.. .+|++|++++|.+..+|+. + .+++|++|++++|.++.+ +..+..+++
T Consensus 50 ~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 50 ANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred CcccEEECCCCC-----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 689999998764 33344566776 9999999999999998875 4 899999999999999964 577899999
Q ss_pred CceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccC-CCCccEEEeecCCCCCCCccccc---CCccEEE
Q 045202 392 LNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-LGLLKELNLSGCSKLKRLPEISS---GNIETMR 467 (887)
Q Consensus 392 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~---~~L~~L~ 467 (887)
|++|++++|..+..++ +..+..+++|++|++++|.+.+..|..+. +++|++|++++|. ...+|.... ++|++|+
T Consensus 125 L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 125 LQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp CCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEE
T ss_pred ccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEE
Confidence 9999999998665554 34567899999999999998888887764 7777777777653 233333221 5666666
Q ss_pred ccCCCCCCCC---c-----------------------------chhcC--------------------------------
Q 045202 468 LDGTAPEELP---S-----------------------------SIECL-------------------------------- 483 (887)
Q Consensus 468 L~~~~i~~lp---~-----------------------------~i~~l-------------------------------- 483 (887)
+++|.+..++ . .+..+
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 6666555431 0 01112
Q ss_pred ---------------------------CCCcEEecccCCCCccCCccc-CCCCCCcEEEeeCCCCCCCCch---hhcCCC
Q 045202 484 ---------------------------SKLLHLDLVDCKTLKSLPSGL-GKLKSLGILSIDGCSNLQRLPE---ELGNLQ 532 (887)
Q Consensus 484 ---------------------------~~L~~L~L~~~~~~~~lp~~l-~~L~~L~~L~L~~~~~~~~~p~---~l~~l~ 532 (887)
.+|+.|++++|. +..+|..+ .++++|++|++++|.+.+.+|. .++.++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 234444444443 22344443 3466666666666665554432 245566
Q ss_pred CCceeeccCccCccCCc---cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEE
Q 045202 533 ALDSLHAVGTAITEVPP---SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELH 609 (887)
Q Consensus 533 ~L~~L~L~~n~i~~lp~---~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~ 609 (887)
+|++|++++|.++.++. .+..+++|+.|++++|++. .+|..+..+++|+.|++++|.++.+|..+ .++|++|+
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~ 437 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLD 437 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEE
T ss_pred cCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cCChhhcccccccEEECCCCCcccccchh--cCCceEEE
Confidence 66666666666665542 3566666666666666655 34555566666666666666666655433 24666666
Q ss_pred cCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCC
Q 045202 610 LNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPND 689 (887)
Q Consensus 610 L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~ 689 (887)
|++|+++.++ ..+++|++|+|++|+ ++.+|. . ..+++|+.|++++|.+++..+..+..+..++.++|++|+
T Consensus 438 Ls~N~l~~~~---~~l~~L~~L~Ls~N~-l~~ip~---~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 438 VSNNNLDSFS---LFLPRLQELYISRNK-LKTLPD---A--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSSCCSCCC---CCCTTCCEEECCSSC-CSSCCC---G--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCChhhhc---ccCChhcEEECCCCc-cCcCCC---c--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 6666666554 478899999999995 334443 2 268999999999999999999999999999999999999
Q ss_pred CCcchh
Q 045202 690 LGGIFK 695 (887)
Q Consensus 690 l~~i~~ 695 (887)
+.+-.+
T Consensus 509 ~~~~~~ 514 (549)
T 2z81_A 509 WDCSCP 514 (549)
T ss_dssp BCCCHH
T ss_pred ccCCCc
Confidence 988765
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.9e-29 Score=289.50 Aligned_cols=344 Identities=14% Similarity=0.107 Sum_probs=267.8
Q ss_pred CCeeEEEecCCCCCCC-CCCC-CCCCccEEEcCCCCCc-cc-hhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcE
Q 045202 345 TEVRYLHWHRYPLKSL-PSNI-HPEKLVLLKMPHSNIE-QV-FDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAI 420 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~n~i~-~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 420 (887)
+++++|++++|.++.+ |..+ .+++|++|++++|.+. .+ +..+..+++|++|++++|.... . .+..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~-~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-L-ETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-E-CTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-c-ChhhccCcccCCE
Confidence 7788999999988877 4444 7889999999998886 44 3668888999999999887432 2 2456778899999
Q ss_pred EEecCCCCCCCCCCc--c-CCCCccEEEeecCCCCCCCccc-cc--CCccEEEccCCCCCCCCc-chhcC--CCCcEEec
Q 045202 421 LNLSGRKNLQSLPAR--I-HLGLLKELNLSGCSKLKRLPEI-SS--GNIETMRLDGTAPEELPS-SIECL--SKLLHLDL 491 (887)
Q Consensus 421 L~L~~~~~~~~lp~~--~-~l~~L~~L~L~~~~~l~~lp~~-~~--~~L~~L~L~~~~i~~lp~-~i~~l--~~L~~L~L 491 (887)
|+|++|.+.+..|.. + .+++|++|+|++|......|.. +. ++|++|++++|.+..+++ .+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999887655443 4 4889999999988665555653 22 889999999998886644 46655 68889999
Q ss_pred ccCCCCccCCcc--------cCCCCCCcEEEeeCCCCCCCCchhhcCC---CCCceeeccCccCccCC-----------c
Q 045202 492 VDCKTLKSLPSG--------LGKLKSLGILSIDGCSNLQRLPEELGNL---QALDSLHAVGTAITEVP-----------P 549 (887)
Q Consensus 492 ~~~~~~~~lp~~--------l~~L~~L~~L~L~~~~~~~~~p~~l~~l---~~L~~L~L~~n~i~~lp-----------~ 549 (887)
++|.+....+.. +..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+.... .
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 988766544332 3366889999999998888777776554 78889999887544211 1
Q ss_pred ccc--CCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCc-cccccCCCCCcEEEcCCCCCccc-chhhhcC
Q 045202 550 SIV--RLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMEL-PESLGLLSSVRELHLNGNNFERI-PESIIQL 625 (887)
Q Consensus 550 ~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l 625 (887)
.+. ..++|+.|++++|.+.. ..|..+..+++|+.|+|++|.++++ |..++.+++|++|+|++|.++.+ |..+..+
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred ccccccccCceEEEecCccccc-cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 122 24689999999998764 3466788999999999999999985 56889999999999999999966 5678999
Q ss_pred CCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchh
Q 045202 626 SNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFK 695 (887)
Q Consensus 626 ~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~ 695 (887)
++|++|+|++|.. ..+++..+.++++|++|++++|.++++++..+..+..|+.++|++|++++-.|
T Consensus 347 ~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 347 DKLEVLDLSYNHI----RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCC----CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCEEECCCCcc----cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999974 33333334578999999999999999888888899999999999999998776
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.7e-28 Score=270.87 Aligned_cols=301 Identities=20% Similarity=0.253 Sum_probs=230.6
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEec
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLS 424 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 424 (887)
++++.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|. +... ..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~---~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDI---SALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCc---hHHcCCCcCCEEECc
Confidence 7788999999999988875578999999999999998876 8889999999999885 3333 247889999999999
Q ss_pred CCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcc
Q 045202 425 GRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSG 503 (887)
Q Consensus 425 ~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~ 503 (887)
+|.+.. +|....+++|++|++++|.....++.+.. ++|++|++++|.+..++. +..+++|+.|++++|.+.. ++.
T Consensus 119 ~n~i~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~- 194 (347)
T 4fmz_A 119 EDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-ISP- 194 (347)
T ss_dssp TSCCCC-CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC-CGG-
T ss_pred CCcccC-chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc-ccc-
Confidence 988664 34444699999999999887777776555 888888888888887776 7888888888888887544 343
Q ss_pred cCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCccc
Q 045202 504 LGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLL 583 (887)
Q Consensus 504 l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 583 (887)
+..+++|+.|++++|.+....+ +..+++|++|++++|.++.++. +..+++|+.|++++|.+... ..+..+++|+
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~ 268 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI---NAVKDLTKLK 268 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCC
T ss_pred ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC---hhHhcCCCcC
Confidence 7788888888888877665444 7778888888888888887766 77888888888888876643 3467778888
Q ss_pred EEecccCCCCCccccccCCCCCcEEEcCCCCCcc-cchhhhcCCCccEeeccccccccccCCCcccccccCccceEeccc
Q 045202 584 DLSLNDCCIMELPESLGLLSSVRELHLNGNNFER-IPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGII 662 (887)
Q Consensus 584 ~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~ 662 (887)
.|++++|.+++++ .+..+++|+.|++++|+++. .|..+..+++|++|+|++|+.. .+++ ...+++|+.|+++
T Consensus 269 ~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 269 MLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT----DIRP--LASLSKMDSADFA 341 (347)
T ss_dssp EEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC----CCGG--GGGCTTCSEESSS
T ss_pred EEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc----cccC--hhhhhccceeehh
Confidence 8888888887774 46777888888888888874 4466778888888888888632 2222 2367778888887
Q ss_pred CCCCC
Q 045202 663 RRFIP 667 (887)
Q Consensus 663 ~N~l~ 667 (887)
+|.|+
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 77764
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=283.41 Aligned_cols=316 Identities=21% Similarity=0.202 Sum_probs=219.4
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCC
Q 045202 348 RYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGR 426 (887)
Q Consensus 348 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 426 (887)
+.+++++..++.+|..+ +++++.|+|++|.++.++ ..+..+++|+.|++++|.. ... .+..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i-~~~-~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAV-EPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEE-CTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc-CEe-ChhhhhCCccCCEEECCCC
Confidence 56788888888888866 568888999888888774 5677777777777776642 211 2334555666666666666
Q ss_pred CCCCCCCCcc-CCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCC-CcchhcCCCCcEEecccCCCCccCCccc
Q 045202 427 KNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEEL-PSSIECLSKLLHLDLVDCKTLKSLPSGL 504 (887)
Q Consensus 427 ~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l 504 (887)
.+....+..+ ++++|++|+|++ |.+..+ |..+..+++|+.|+|++|.+....|..|
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~----------------------n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISE----------------------NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTT----------------------SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred cCCccCcccccCCCCCCEEECCC----------------------CccccCChhHccccccCCEEECCCCccceeChhhc
Confidence 5443333333 255555555554 445544 3447777788888888877777667777
Q ss_pred CCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCccc
Q 045202 505 GKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLL 583 (887)
Q Consensus 505 ~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 583 (887)
.++++|++|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.... .++.......+|+
T Consensus 149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 227 (477)
T 2id5_A 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLT 227 (477)
T ss_dssp TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCS
T ss_pred cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc-ccCcccccCcccc
Confidence 788888888888877766666667788888888888888776554 67778888888886665432 3344444455788
Q ss_pred EEecccCCCCCcc-ccccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeeccccccccccCCCcccccccCccceEecc
Q 045202 584 DLSLNDCCIMELP-ESLGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGI 661 (887)
Q Consensus 584 ~L~Ls~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l 661 (887)
.|+|++|.++++| ..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.. ..+++..+.++++|+.|++
T Consensus 228 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL----AVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC----SEECTTTBTTCTTCCEEEC
T ss_pred EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc----ceECHHHhcCcccCCEEEC
Confidence 8888888888777 457778888888888888886653 567788888888888863 3333334447788888888
Q ss_pred cCCCCCCCCcchhhhhcccCcccCCCCCCCcc
Q 045202 662 IRRFIPNSSESDFLDLYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 662 ~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i 693 (887)
++|.++++.+..|..+..|+.++|++|.+..-
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 88888887777777788888888888887654
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.4e-28 Score=280.70 Aligned_cols=347 Identities=18% Similarity=0.151 Sum_probs=257.2
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CC-------------eeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccc
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TE-------------VRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQV 382 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~-------------Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l 382 (887)
++|+.|+++++. ....+|..++. .+ +++|+++++.++.+|.. +++|+.|++++|.++.+
T Consensus 34 ~~L~~L~l~~n~-----~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~l 106 (454)
T 1jl5_A 34 KSKTEYYNAWSE-----WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTEL 106 (454)
T ss_dssp CCHHHHHHHHHH-----HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSC
T ss_pred cchhhhhccCCc-----ccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCcCCcc
Confidence 456666666543 22356666665 43 58999999999998873 58999999999999998
Q ss_pred hhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCC
Q 045202 383 FDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGN 462 (887)
Q Consensus 383 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~ 462 (887)
|.. ..+|+.|++++|. +..++. ..++|++|++++|.+.+ +|...++++|++|++++|. +..+|... .+
T Consensus 107 p~~---~~~L~~L~l~~n~-l~~l~~-----~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~-l~~lp~~~-~~ 174 (454)
T 1jl5_A 107 PEL---PQSLKSLLVDNNN-LKALSD-----LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNS-LKKLPDLP-PS 174 (454)
T ss_dssp CCC---CTTCCEEECCSSC-CSCCCS-----CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC-CSCCCCCC-TT
T ss_pred ccc---cCCCcEEECCCCc-cCcccC-----CCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCc-CcccCCCc-cc
Confidence 753 4789999999875 343332 12689999999998775 7854469999999999975 55566543 59
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
|++|++++|.+..+| +++.+++|+.|++++|.+.+ +|.. .++|++|++++|.+. .+|. ++.+++|++|++++|
T Consensus 175 L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 175 LEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSS
T ss_pred ccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCC
Confidence 999999999999988 68999999999999988654 5543 358999999998766 6774 889999999999999
Q ss_pred cCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhh
Q 045202 543 AITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESI 622 (887)
Q Consensus 543 ~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l 622 (887)
.++.+|.. +++|+.|++++|.+.. +|. .+++|+.|++++|.++++|.. .++|+.|++++|+++.++..
T Consensus 248 ~l~~l~~~---~~~L~~L~l~~N~l~~--l~~---~~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~l~~i~~~- 315 (454)
T 1jl5_A 248 LLKTLPDL---PPSLEALNVRDNYLTD--LPE---LPQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRSLCDL- 315 (454)
T ss_dssp CCSSCCSC---CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSEECCC-
T ss_pred cCCccccc---ccccCEEECCCCcccc--cCc---ccCcCCEEECcCCccCcccCc---CCcCCEEECcCCcCCcccCC-
Confidence 99988863 4789999999998775 343 247899999999999887642 36899999999998877631
Q ss_pred hcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCc--chhHHHHH
Q 045202 623 IQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGG--IFKGALQK 700 (887)
Q Consensus 623 ~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~--i~~~~~~~ 700 (887)
.++|++|++++|+.. .+| . .+++|+.|++++|.++.++. .+..++.++|++|.+++ .+|..+..
T Consensus 316 --~~~L~~L~Ls~N~l~-~lp---~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 316 --PPSLEELNVSNNKLI-ELP---A----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp --CTTCCEEECCSSCCS-CCC---C----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred --cCcCCEEECCCCccc-ccc---c----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 258999999998633 344 3 24788999999999987655 46788889999999988 45666655
Q ss_pred h-------------HHHHHHhhhhhhhc
Q 045202 701 I-------------QLLATARLKEAREK 715 (887)
Q Consensus 701 l-------------~~L~~l~l~~n~~~ 715 (887)
+ ++|+.|++++|...
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp EECCC-----------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCC
Confidence 5 78999999988554
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.8e-28 Score=268.08 Aligned_cols=303 Identities=18% Similarity=0.235 Sum_probs=161.7
Q ss_pred CCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEE
Q 045202 365 HPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKEL 444 (887)
Q Consensus 365 ~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L 444 (887)
.+++|+.|+++++.+..++ ++..+++|++|++++|. +...+. +..+++|++|++++|.+.. +|...++++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNKITD-ISALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccch-hhhhcCCccEEEccCCc-cccchh---hhcCCcCCEEEccCCcccC-chHHcCCCcCCEE
Confidence 5677788888888777765 36667777777777764 333322 5666777777777765443 3433346666666
Q ss_pred EeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCC
Q 045202 445 NLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQR 523 (887)
Q Consensus 445 ~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~ 523 (887)
++++|. +..++.... ++|++|++++|.....++.+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+.
T Consensus 116 ~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 116 YLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred ECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 666653 333333222 55555555555433333335555555555555554333222 45555555555555544332
Q ss_pred CchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCC
Q 045202 524 LPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLS 603 (887)
Q Consensus 524 ~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~ 603 (887)
+. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+...+ . +..+++|+.|++++|.+++++ .+..++
T Consensus 193 -~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~ 265 (347)
T 4fmz_A 193 -SP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS--P-LANLSQLTWLEIGTNQISDIN-AVKDLT 265 (347)
T ss_dssp -GG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred -cc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc--c-hhcCCCCCEEECCCCccCCCh-hHhcCC
Confidence 22 4555555555555555554443 555555555555555544322 1 455555555555555555542 345555
Q ss_pred CCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcc
Q 045202 604 SVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNF 683 (887)
Q Consensus 604 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l 683 (887)
+|++|++++|+++.+| .+..+++|+.|+|++|+. ...++..+.++++|+.|++++|.+++..+ +..+..|+.+
T Consensus 266 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 266 KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQL----GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC----CGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred CcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcC----CCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 5555555555555553 355555555555555542 22222222345555555555555555444 4445555555
Q ss_pred cCCCCCC
Q 045202 684 KLDPNDL 690 (887)
Q Consensus 684 ~L~~N~l 690 (887)
++++|.+
T Consensus 339 ~l~~N~i 345 (347)
T 4fmz_A 339 DFANQVI 345 (347)
T ss_dssp SSSCC--
T ss_pred ehhhhcc
Confidence 5555554
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=3.5e-28 Score=286.46 Aligned_cols=360 Identities=16% Similarity=0.144 Sum_probs=270.1
Q ss_pred CCCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCC-CC-CCCCccEEEcCCCCCccchhhhcCCccC
Q 045202 316 TPNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPS-NI-HPEKLVLLKMPHSNIEQVFDSVQHYLKL 392 (887)
Q Consensus 316 ~~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L 392 (887)
.++++.|++.++.. ....|..+.. ++|++|++++|.++.+++ .+ .+++|++|+|++|.++.+|.. .+++|
T Consensus 51 ~~~L~~L~Ls~N~i-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQNSI-----SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp CTTCCEEECCSSCC-----CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCcCEEECCCCCc-----cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 37899999987642 2233456666 899999999999998854 45 789999999999999999876 89999
Q ss_pred ceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCc--cEEEeecCCC--CCCCccccc--------
Q 045202 393 NQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLL--KELNLSGCSK--LKRLPEISS-------- 460 (887)
Q Consensus 393 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L--~~L~L~~~~~--l~~lp~~~~-------- 460 (887)
++|++++|. +...+.|..++.+++|++|++++|.+..... ..+++| ++|++++|.. ....|..+.
T Consensus 124 ~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~--~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 124 RHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL--LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp SEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCTTTT--GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred CEEECCCCC-ccccCchHhhcccCcccEEecCCCccccCch--hhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 999999987 4555556788999999999999998765322 135555 9999999865 232222111
Q ss_pred --------------------CCccEEEccCCCCC---------------------------------CCCcchhcCCCCc
Q 045202 461 --------------------GNIETMRLDGTAPE---------------------------------ELPSSIECLSKLL 487 (887)
Q Consensus 461 --------------------~~L~~L~L~~~~i~---------------------------------~lp~~i~~l~~L~ 487 (887)
.+|+.|++++|... .+++. ....+|+
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~ 279 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVE 279 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhccccc
Confidence 34555555554310 00111 1123677
Q ss_pred EEecccCCCCccCCccc-----CCCCC--------------------------CcEEEeeCCCCCCCCchhhcCCCCCce
Q 045202 488 HLDLVDCKTLKSLPSGL-----GKLKS--------------------------LGILSIDGCSNLQRLPEELGNLQALDS 536 (887)
Q Consensus 488 ~L~L~~~~~~~~lp~~l-----~~L~~--------------------------L~~L~L~~~~~~~~~p~~l~~l~~L~~ 536 (887)
+|++++|.+.+.+|..+ .++++ |++|++++|.+.... ..+.+++|++
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 357 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence 77777777666677655 34443 455555554432211 1167899999
Q ss_pred eeccCccCcc-CCccccCCCCCCEEEccccCCCcc-cccccccCCCcccEEecccCCCCC-cccc-ccCCCCCcEEEcCC
Q 045202 537 LHAVGTAITE-VPPSIVRLKRVRGIYLGRNRGLSL-PITFSVDGLQNLLDLSLNDCCIME-LPES-LGLLSSVRELHLNG 612 (887)
Q Consensus 537 L~L~~n~i~~-lp~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~-~~~l~~L~~L~L~~ 612 (887)
|++++|.++. +|..+..+++|+.|++++|.+... .+|..+..+++|+.|++++|.++. +|.. +..+++|++|++++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 9999999996 788999999999999999998764 345678899999999999999998 8864 78899999999999
Q ss_pred CCCc-ccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCC
Q 045202 613 NNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLG 691 (887)
Q Consensus 613 n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~ 691 (887)
|+++ .+|..+. ++|+.|+|++|. +..+|..++ ++++|+.|++++|.++.+++..+..+..++.++|++|++.
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~----l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNR----IMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSC----CCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCcchhhhhc--CcCCEEECCCCc----CcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 9997 5554433 799999999996 446666666 8899999999999999887777888999999999999998
Q ss_pred cchh
Q 045202 692 GIFK 695 (887)
Q Consensus 692 ~i~~ 695 (887)
+-.+
T Consensus 511 c~c~ 514 (562)
T 3a79_B 511 CTCP 514 (562)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7654
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.2e-27 Score=273.20 Aligned_cols=339 Identities=14% Similarity=0.091 Sum_probs=204.5
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEec
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLS 424 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~ 424 (887)
++|++|+++++.++.+|....+++|++|++++|.++.++ +..+++|++|++++|. +...+ ++.+++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee----cCCCCcCCEEECC
Confidence 566666666666666653335666666666666666653 5555556666655554 22221 3445555555555
Q ss_pred CCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCccc
Q 045202 425 GRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGL 504 (887)
Q Consensus 425 ~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l 504 (887)
+|.+.+ +| ...++ +|++|++++|.++.++ ++.+++|+.|++++|...+.+ .+
T Consensus 115 ~N~l~~-l~-~~~l~----------------------~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 115 TNKLTK-LD-VSQNP----------------------LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp SSCCSC-CC-CTTCT----------------------TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred CCcCCe-ec-CCCCC----------------------cCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--cc
Confidence 554433 22 11244 4555555555555543 555666666666666555544 25
Q ss_pred CCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccE
Q 045202 505 GKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLD 584 (887)
Q Consensus 505 ~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 584 (887)
..+++|++|++++|.+.+ +| ++.+++|+.|++++|.++.++ +..+++|+.|++++|++... | +..+++|+.
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~ 237 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTY 237 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC--C--CTTCTTCSE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc--C--ccccCCCCE
Confidence 566666666666665444 33 556666666666666666552 55666666666666665542 2 555666666
Q ss_pred EecccCCCCCccccccCCCCCcEE----------EcCCCCCc-ccchhhhcCCCccEeeccccccccccCCCccccc---
Q 045202 585 LSLNDCCIMELPESLGLLSSVREL----------HLNGNNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLL--- 650 (887)
Q Consensus 585 L~Ls~n~l~~lp~~~~~l~~L~~L----------~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~--- 650 (887)
|++++|.++++| ++.+++|+.| ++++|.+. .+| ++.+++|+.|+|++|+.++.+|.-...+.
T Consensus 238 L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 238 FDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred EEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 666666666654 3344444444 44444332 444 46789999999999998888875434443
Q ss_pred -ccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhhhhcCCCCCCceEEEccC
Q 045202 651 -VGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEAREKISYPWLQGRGFLPW 729 (887)
Q Consensus 651 -~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~pg 729 (887)
.++++|+.|++++|.++++. +..+..|+.+++++|+++++ +.|..+++..|...+.. . ..
T Consensus 314 l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~~---~-~~---- 374 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAEG---Q-TI---- 374 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEEE---E-EE----
T ss_pred hhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEecc---e-ee----
Confidence 38899999999999999962 77889999999999999985 34556677777544320 0 01
Q ss_pred CCCCCCccccCCCcEEEEEcCCCCC
Q 045202 730 NEIPKWFSFQSVGSCVTLEMPPGFF 754 (887)
Q Consensus 730 ~~ip~wf~~~~~g~~i~~~lp~~~~ 754 (887)
.+|.. .-..+.++..+|+.+.
T Consensus 375 -~l~~l---~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 375 -TMPKE---TLTNNSLTIAVSPDLL 395 (457)
T ss_dssp -ECCCB---CCBTTBEEEECCTTCB
T ss_pred -ecCcc---ccccCcEEEEcChhHh
Confidence 12211 1134567778888776
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=279.66 Aligned_cols=315 Identities=15% Similarity=0.152 Sum_probs=253.0
Q ss_pred cEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccC-CCCccEEEeec
Q 045202 370 VLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-LGLLKELNLSG 448 (887)
Q Consensus 370 ~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~L~~ 448 (887)
+.++.+++.++.+|..+. ++++.|++++|+. ..+ .+..+..+++|++|+|++|.+.+..|..+. ++
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~--------- 80 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRI-KTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLF--------- 80 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCC-CEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---------
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCcc-ceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCc---------
Confidence 456667777777665432 4566666665542 211 123344555555555555554444444332 44
Q ss_pred CCCCCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchh
Q 045202 449 CSKLKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEE 527 (887)
Q Consensus 449 ~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~ 527 (887)
+|++|+|++|.+..+|.. +.++++|+.|+|++|.+.+..|..|.++++|++|++++|.+....|..
T Consensus 81 -------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 81 -------------NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp -------------TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS
T ss_pred -------------cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh
Confidence 555555555667777765 789999999999999998888999999999999999999988888889
Q ss_pred hcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCC
Q 045202 528 LGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSV 605 (887)
Q Consensus 528 l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L 605 (887)
+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+... .+..+..+++|+.|++++|...+ +|.......+|
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 9999999999999999998886 589999999999999987654 34568899999999999987765 77777777799
Q ss_pred cEEEcCCCCCcccc-hhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCccc
Q 045202 606 RELHLNGNNFERIP-ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFK 684 (887)
Q Consensus 606 ~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~ 684 (887)
+.|+|++|+++.+| ..+..+++|+.|+|++|. +..++...+.++++|+.|++++|.++++.+..|..+..|+.|+
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP----ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC----CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCc----CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 99999999999999 468999999999999997 4445555556899999999999999999999999999999999
Q ss_pred CCCCCCCcchhHHHHHhHHHHHHhhhhhhhc
Q 045202 685 LDPNDLGGIFKGALQKIQLLATARLKEAREK 715 (887)
Q Consensus 685 L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~ 715 (887)
|++|.++++.+..|..+++|+.+++++|...
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 9999999999999999999999999999655
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.6e-28 Score=294.01 Aligned_cols=389 Identities=16% Similarity=0.103 Sum_probs=241.4
Q ss_pred CCCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCCccch-hhhcCCcc
Q 045202 316 TPNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPSN-I-HPEKLVLLKMPHSNIEQVF-DSVQHYLK 391 (887)
Q Consensus 316 ~~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~i~~l~-~~~~~l~~ 391 (887)
..+++.|+++++. .....+..+.. ++|++|++++|.++.+|+. | .+++|++|+|++|+++.++ ..+.++++
T Consensus 51 p~~~~~LdLs~N~-----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLSFNP-----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEeeCCC-----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 3578888887764 22233445666 8899999999999888765 4 6889999999999998887 45788999
Q ss_pred CceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCC-CCCCccC-CCCccEEEeecCCCCCCCccccc------CCc
Q 045202 392 LNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQ-SLPARIH-LGLLKELNLSGCSKLKRLPEISS------GNI 463 (887)
Q Consensus 392 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~-~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~------~~L 463 (887)
|++|++++|+ +..++ +..++++++|++|+|++|.+.. .+|..+. +++|++|+|++|......+..+. ...
T Consensus 126 L~~L~Ls~N~-l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 126 LQKLVAVETN-LASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CCEEECTTSC-CCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCEEECCCCc-CCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 9999999886 33333 4557888999999999988765 4566664 88999999988753322222111 122
Q ss_pred cEEEccCCCCCCCCcchh--------------------------------------------------------------
Q 045202 464 ETMRLDGTAPEELPSSIE-------------------------------------------------------------- 481 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~-------------------------------------------------------------- 481 (887)
..++++.|.+..++....
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 234444444333222111
Q ss_pred ------------------------------------------cCCCCcEEecccCCCCccCC------------------
Q 045202 482 ------------------------------------------CLSKLLHLDLVDCKTLKSLP------------------ 501 (887)
Q Consensus 482 ------------------------------------------~l~~L~~L~L~~~~~~~~lp------------------ 501 (887)
....|+.|++.+|.+....+
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 11223333333332111100
Q ss_pred -cccCCCCCCcEEEeeCCCCC--CCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccC
Q 045202 502 -SGLGKLKSLGILSIDGCSNL--QRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDG 578 (887)
Q Consensus 502 -~~l~~L~~L~~L~L~~~~~~--~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 578 (887)
.....+++|+.|+++.|.+. +..+..+..+.+|+.|++..+.+..++..+..+++|+.+++..+.......+..+..
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 01112333444444433321 122333334444444444444444444455556666666665444333333444666
Q ss_pred CCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCc--ccchhhhcCCCccEeeccccccccccCCCcccccccCcc
Q 045202 579 LQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFE--RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCAS 655 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~ 655 (887)
+++|+.++++.|.+.. .+..+..+++|+.|+|++|++. .+|..+..+++|++|+|++|+ +..+++..+.++++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~----L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ----LEQLSPTAFNSLSS 519 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC----CCEECTTTTTTCTT
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc----cCCcChHHHcCCCC
Confidence 7777777777777776 4456667778888888887644 356677778888888888875 33444444457778
Q ss_pred ceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHh-HHHHHHhhhhhhhc
Q 045202 656 LHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKI-QLLATARLKEAREK 715 (887)
Q Consensus 656 L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l-~~L~~l~l~~n~~~ 715 (887)
|+.|++++|.|+++.+..|..+..|+.|+|++|+++++.|..+..+ ++|+.|+|++|...
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8888888888888777777777888888888888888877777776 56777777777544
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=4.6e-29 Score=284.63 Aligned_cols=342 Identities=18% Similarity=0.147 Sum_probs=176.6
Q ss_pred CccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCC-CCCCCC-CCCC-------------ccEEEcCCCCCcc
Q 045202 318 NLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLK-SLPSNI-HPEK-------------LVLLKMPHSNIEQ 381 (887)
Q Consensus 318 ~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~-~lp~~~-~~~~-------------L~~L~L~~n~i~~ 381 (887)
.|+.|.++++. . ..+|..++. ++|++|++++|.+. .+|..+ .+.+ +++|++++|.++.
T Consensus 12 ~L~~L~l~~n~-----l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 12 FLQEPLRHSSN-----L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cchhhhcccCc-----h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 45555554432 1 345555554 55666666555543 455444 3333 3556666665555
Q ss_pred chhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc-
Q 045202 382 VFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS- 460 (887)
Q Consensus 382 l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~- 460 (887)
+|.. .++|+.|++++|. +.+++. .+++|++|++++|.+.+ +|.. .++|++|++++|. +..+|.+..
T Consensus 86 lp~~---~~~L~~L~l~~n~-l~~lp~-----~~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~-l~~lp~~~~l 152 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNS-LTELPE-----LPQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQ-LEKLPELQNS 152 (454)
T ss_dssp CCSC---CTTCSEEECCSSC-CSSCCC-----CCTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSC-CSSCCCCTTC
T ss_pred CCCC---cCCCCEEEccCCc-CCcccc-----ccCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCC-CCCCcccCCC
Confidence 5431 2455556665544 222321 23555666666554432 2221 1456666666553 333553322
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
++|++|++++|.++.+|..+ .+|++|++++|.+.+ +| .++++++|++|++++|.+.+ +|... ++|++|+++
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~ 223 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAG 223 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECC
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECc
Confidence 55666666666655555432 355666666655433 44 35556666666666655443 33221 355666666
Q ss_pred CccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch
Q 045202 541 GTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 541 ~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
+|.+..+|. +..+++|+.|++++|++.. +|. .+++|+.|++++|.++++|.. +++|+.|++++|+++.+|.
T Consensus 224 ~n~l~~lp~-~~~l~~L~~L~l~~N~l~~--l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 224 NNILEELPE-LQNLPFLTTIYADNNLLKT--LPD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp SSCCSSCCC-CTTCTTCCEEECCSSCCSS--CCS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESC
T ss_pred CCcCCcccc-cCCCCCCCEEECCCCcCCc--ccc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccC
Confidence 666655553 5556666666665555543 222 135566666666666555542 2556666666666555442
Q ss_pred hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHH
Q 045202 621 SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQK 700 (887)
Q Consensus 621 ~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~ 700 (887)
. .++|+.|++++|.. ..++.+| ++|+.|++++|.+++++.. +..++.+++++|.++.+.. .
T Consensus 295 ~---~~~L~~L~l~~N~l-~~i~~~~-------~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~----~ 355 (454)
T 1jl5_A 295 L---PPNLYYLNASSNEI-RSLCDLP-------PSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE----L 355 (454)
T ss_dssp C---CTTCCEEECCSSCC-SEECCCC-------TTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----C
T ss_pred c---CCcCCEEECcCCcC-CcccCCc-------CcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc----h
Confidence 1 24566666666532 2233222 4788999999999885442 4778889999999987655 3
Q ss_pred hHHHHHHhhhhhhhc
Q 045202 701 IQLLATARLKEAREK 715 (887)
Q Consensus 701 l~~L~~l~l~~n~~~ 715 (887)
+++|+.|++++|...
T Consensus 356 l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLR 370 (454)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred hhhccEEECCCCCCC
Confidence 677888888887544
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.7e-27 Score=271.81 Aligned_cols=336 Identities=15% Similarity=0.120 Sum_probs=237.6
Q ss_pred CCccEEEeeccccccCccceeccCCCCC-CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCcee
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPGF-TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQI 395 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~~-~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L 395 (887)
++|+.|++.++.. ..+| .+.. ++|++|++++|.++.+| ...+++|++|++++|.++.++ +..+++|++|
T Consensus 42 ~~L~~L~Ls~n~l------~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSI------TDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCC------CCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEccCCCc------ccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 6899999987642 1234 4444 99999999999999987 447999999999999999985 8899999999
Q ss_pred ecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCC
Q 045202 396 ITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEE 475 (887)
Q Consensus 396 ~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~ 475 (887)
++++|. +..++ ++.+++|++|++++|.+.+ ++ ...+++|++|++++|..++.++....++|++|++++|.++.
T Consensus 112 ~L~~N~-l~~l~----~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNK-LTKLD----VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSC-CSCCC----CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCc-CCeec----CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 999986 44442 6889999999999999876 33 33599999999999988877753333899999999999999
Q ss_pred CCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCC
Q 045202 476 LPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLK 555 (887)
Q Consensus 476 lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 555 (887)
+| +..+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ +| ++.+++|+.|++++|.++.+| +..++
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~ 254 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLS 254 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCT
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCC
Confidence 98 88999999999999987664 38899999999999998777 66 889999999999999999887 56778
Q ss_pred CCCEEEccccCCCccccc-------ccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCcccchhhhcCCC
Q 045202 556 RVRGIYLGRNRGLSLPIT-------FSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFERIPESIIQLSN 627 (887)
Q Consensus 556 ~L~~L~L~~n~~~~~~~~-------~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 627 (887)
+|+.|+++.|.+....+. ..++.+++|+.|++++|...+ +|. ..++|+.|+ +..+++
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~------------l~~~~~ 319 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC---QAAGITELD------------LSQNPK 319 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCC------------CTTCTT
T ss_pred CCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc---CCCcceEec------------hhhccc
Confidence 888887766644322110 012344555555555554332 221 111111111 233456
Q ss_pred ccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHH
Q 045202 628 LKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATA 707 (887)
Q Consensus 628 L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l 707 (887)
|+.|+|++|...+ + + ..+|++|+.|++++|+++++ ..+..+++++|.++|.. .+..|..+
T Consensus 320 L~~L~L~~N~l~~-l---~---l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~~-----~~~~l~~l 379 (457)
T 3bz5_A 320 LVYLYLNNTELTE-L---D---VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAEG-----QTITMPKE 379 (457)
T ss_dssp CCEEECTTCCCSC-C---C---CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEEE-----EEEECCCB
T ss_pred CCEEECCCCcccc-c---c---cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEecc-----eeeecCcc
Confidence 6666666664222 2 1 12566667777766666653 23344556666665541 23334445
Q ss_pred hhhhhhh
Q 045202 708 RLKEARE 714 (887)
Q Consensus 708 ~l~~n~~ 714 (887)
++++|.+
T Consensus 380 ~l~~N~l 386 (457)
T 3bz5_A 380 TLTNNSL 386 (457)
T ss_dssp CCBTTBE
T ss_pred ccccCcE
Confidence 5555533
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.8e-27 Score=267.04 Aligned_cols=305 Identities=13% Similarity=0.089 Sum_probs=221.6
Q ss_pred CCCCccEEEcCCCCCccchhh-hcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCcc-CCCCcc
Q 045202 365 HPEKLVLLKMPHSNIEQVFDS-VQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARI-HLGLLK 442 (887)
Q Consensus 365 ~~~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~ 442 (887)
.+.+++.|+++++.++.+|.. +..+++|++|++++|.. ... .+..+..+++|++|+|++|.+.+..|..+ ++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-ccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 456667777777777666643 56677777777776652 222 23345667777777777777666666655 377777
Q ss_pred EEEeecCCCCCCCcccc-c--CCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCC
Q 045202 443 ELNLSGCSKLKRLPEIS-S--GNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGC 518 (887)
Q Consensus 443 ~L~L~~~~~l~~lp~~~-~--~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~ 518 (887)
+|+|++|. +..+|... . ++|++|++++|.+..+++. +..+++|+.|++++|.+... .+..+++|++|++++|
T Consensus 121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 77777763 44555432 2 6778888888888777554 78888888888888875543 2557788888888887
Q ss_pred CCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCc-cc
Q 045202 519 SNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMEL-PE 597 (887)
Q Consensus 519 ~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~ 597 (887)
.+.. +...++|+.|++++|.+..+|... .++|+.|++++|.+... ..+..+++|+.|++++|.++++ |.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChh
Confidence 6543 344567888899988888776533 57889999988887643 3578888999999999988874 67
Q ss_pred cccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhh
Q 045202 598 SLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDL 677 (887)
Q Consensus 598 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l 677 (887)
.+..+++|+.|+|++|+++.+|..+..+++|++|+|++|+ +..+|..+ ..+++|+.|++++|.++.+. +..+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~-~~l~~L~~L~L~~N~i~~~~---~~~~ 338 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH----LLHVERNQ-PQFDRLENLYLDHNSIVTLK---LSTH 338 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC----CCCCGGGH-HHHTTCSEEECCSSCCCCCC---CCTT
T ss_pred HccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc----ceecCccc-cccCcCCEEECCCCccceeC---chhh
Confidence 8888899999999999998888877888899999999886 33444433 26788999999999888764 4556
Q ss_pred cccCcccCCCCCCCcc
Q 045202 678 YLSDNFKLDPNDLGGI 693 (887)
Q Consensus 678 ~~l~~l~L~~N~l~~i 693 (887)
..++.+++++|.+...
T Consensus 339 ~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCCSEEECCSSCEEHH
T ss_pred ccCCEEEcCCCCccch
Confidence 7888899999988753
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.2e-27 Score=286.41 Aligned_cols=371 Identities=17% Similarity=0.127 Sum_probs=245.4
Q ss_pred eccCCCCCCCeeEEEecCCCCCCCCCC-C-CCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccc
Q 045202 337 SYFQVPGFTEVRYLHWHRYPLKSLPSN-I-HPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQ 413 (887)
Q Consensus 337 ~~p~~~~~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 413 (887)
.+|.++. ..+++|++++|.++.+|+. | .+++|++|+|++|+|+.++ ..+.++++|++|+|++|+ +..+ ++..+.
T Consensus 45 ~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l-~~~~f~ 121 (635)
T 4g8a_A 45 KIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSL-ALGAFS 121 (635)
T ss_dssp SCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEE-CGGGGT
T ss_pred ccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCC-CHHHhc
Confidence 3444332 5688888888888888764 4 7888888888888888886 457888888888888876 3333 345677
Q ss_pred cCCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCCCC-CCccccc--CCccEEEccCCCCCCCCcc-hhcCCCC--
Q 045202 414 HLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLK-RLPEISS--GNIETMRLDGTAPEELPSS-IECLSKL-- 486 (887)
Q Consensus 414 ~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~-~lp~~~~--~~L~~L~L~~~~i~~lp~~-i~~l~~L-- 486 (887)
.+++|++|+|++|.+.+..+..+ ++++|++|+|++|.... ..|.... ++|++|++++|.++.+++. +..+.++
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 88888888888888766555555 48888888888875433 3455444 7888888888888876543 5444332
Q ss_pred --cEEecccCCCCccCCcc------------------------cCCCCCCcE----------------------------
Q 045202 487 --LHLDLVDCKTLKSLPSG------------------------LGKLKSLGI---------------------------- 512 (887)
Q Consensus 487 --~~L~L~~~~~~~~lp~~------------------------l~~L~~L~~---------------------------- 512 (887)
..++++.|.+....+.. +..+..++.
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 24555544322111110 111111111
Q ss_pred -----------------------------EEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCc--------------
Q 045202 513 -----------------------------LSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPP-------------- 549 (887)
Q Consensus 513 -----------------------------L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-------------- 549 (887)
+.+.++.... ...+....+|+.|++.+|.+..++.
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 359 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESC
T ss_pred hhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccc
Confidence 1111111000 0012223344455554444332211
Q ss_pred ------cccCCCCCCEEEccccCCCcc------------------------cccccccCCCcccEEecccCCCCCc--cc
Q 045202 550 ------SIVRLKRVRGIYLGRNRGLSL------------------------PITFSVDGLQNLLDLSLNDCCIMEL--PE 597 (887)
Q Consensus 550 ------~l~~l~~L~~L~L~~n~~~~~------------------------~~~~~~~~l~~L~~L~Ls~n~l~~l--p~ 597 (887)
....+++|+.|+++.|.+... ..+..+..+++|+.++++.++.... +.
T Consensus 360 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 360 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccc
Confidence 122455666666665554321 1233355667777777777766552 24
Q ss_pred cccCCCCCcEEEcCCCCCccc-chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhh
Q 045202 598 SLGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLD 676 (887)
Q Consensus 598 ~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~ 676 (887)
.+..+++|+.++++.|.+..+ |..+..+++|+.|+|++|.....+ ++..+.++++|+.|++++|.|+++.+..|..
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhccccccc---CchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 567788899999999988844 556788899999999999755432 2233347899999999999999999999999
Q ss_pred hcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhhhhhc
Q 045202 677 LYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKEAREK 715 (887)
Q Consensus 677 l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~n~~~ 715 (887)
+..|+.|+|++|+++++.+.+|.++++|+.|+|++|.+.
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 999999999999999999999999999999999999654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=5.7e-27 Score=263.01 Aligned_cols=304 Identities=13% Similarity=0.115 Sum_probs=254.3
Q ss_pred CCCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcE
Q 045202 344 FTEVRYLHWHRYPLKSLPSNI--HPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAI 420 (887)
Q Consensus 344 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 420 (887)
..++++|+++++.++.+|..+ .+++|++|++++|.++.++ ..+..+++|+.|++++|. +... .+..+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcC-CHHHhcCCCCCCE
Confidence 388999999999999999874 6899999999999999887 578999999999999987 3333 3456788999999
Q ss_pred EEecCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCC
Q 045202 421 LNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTL 497 (887)
Q Consensus 421 L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~ 497 (887)
|++++|.+....+..+ ++++|++|++++|......|..+. ++|++|++++|.++.++ +..+++|+.|++++|.+.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence 9999998774444444 499999999999865444444343 89999999999999875 677899999999998754
Q ss_pred ccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCccccccccc
Q 045202 498 KSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVD 577 (887)
Q Consensus 498 ~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 577 (887)
. +...++|++|++++|.+... |.. ..++|+.|++++|.++.. +.+..+++|+.|++++|.+... .|..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI-MYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE-ESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCc-ChhHcc
Confidence 3 33456899999999886543 432 357899999999999976 5789999999999999987653 466789
Q ss_pred CCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccce
Q 045202 578 GLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLH 657 (887)
Q Consensus 578 ~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~ 657 (887)
.+++|+.|+|++|.++++|..+..+++|++|+|++|+++.+|..+..+++|+.|+|++|+. ..++ ...+++|+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i----~~~~---~~~~~~L~ 342 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI----VTLK---LSTHHTLK 342 (390)
T ss_dssp TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC----CCCC---CCTTCCCS
T ss_pred ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc----ceeC---chhhccCC
Confidence 9999999999999999999888899999999999999999999999999999999999973 3333 23679999
Q ss_pred EecccCCCCCC
Q 045202 658 GTGIIRRFIPN 668 (887)
Q Consensus 658 ~L~l~~N~l~~ 668 (887)
.|++++|.++.
T Consensus 343 ~L~l~~N~~~~ 353 (390)
T 3o6n_A 343 NLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCEEH
T ss_pred EEEcCCCCccc
Confidence 99999998875
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.5e-27 Score=278.65 Aligned_cols=306 Identities=14% Similarity=0.087 Sum_probs=232.0
Q ss_pred CCCCCccEEEcCCCCCccchh-hhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCcc-CCCCc
Q 045202 364 IHPEKLVLLKMPHSNIEQVFD-SVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARI-HLGLL 441 (887)
Q Consensus 364 ~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L 441 (887)
..+.+++.+++++|.+..+|. .+..+++|+.|++++|. +..+ .+..+..+++|++|+|++|.+.+..|..+ ++++|
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 356777778888777777764 35677788888887766 2222 23456778888888888888777666665 48888
Q ss_pred cEEEeecCCCCCCCcccc-c--CCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeC
Q 045202 442 KELNLSGCSKLKRLPEIS-S--GNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDG 517 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~-~--~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~ 517 (887)
++|+|++|. +..+|... . ++|++|+|++|.+..+++ .++.+++|+.|+|++|.+.+. + +..+++|+.|++++
T Consensus 126 ~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCS
T ss_pred CEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhccc
Confidence 888888874 44555432 2 788888888888887765 488889999999998876553 2 55688899999988
Q ss_pred CCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-cc
Q 045202 518 CSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LP 596 (887)
Q Consensus 518 ~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp 596 (887)
|.+.+ +...++|+.|++++|.+..+|..+ .++|+.|++++|.+.. +..+..+++|+.|+|++|.+++ .|
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred Ccccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCH
Confidence 76543 345567899999999988776644 3689999998888764 3557888999999999999987 47
Q ss_pred ccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhh
Q 045202 597 ESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLD 676 (887)
Q Consensus 597 ~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~ 676 (887)
..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|.. ..+|..+ ..+++|+.|++++|.+++.. +..
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l----~~i~~~~-~~l~~L~~L~L~~N~l~~~~---~~~ 343 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL----LHVERNQ-PQFDRLENLYLDHNSIVTLK---LST 343 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCC----CCCGGGH-HHHTTCSEEECCSSCCCCCC---CCT
T ss_pred HHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCC----CccCccc-ccCCCCCEEECCCCCCCCcC---hhh
Confidence 788899999999999999998888888889999999999863 3444443 36788999999999988764 455
Q ss_pred hcccCcccCCCCCCCcc
Q 045202 677 LYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 677 l~~l~~l~L~~N~l~~i 693 (887)
+..|+.++|++|.+.+-
T Consensus 344 ~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred cCCCCEEEeeCCCCCCh
Confidence 67888899999988754
No 41
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=2.2e-28 Score=315.93 Aligned_cols=262 Identities=16% Similarity=0.172 Sum_probs=192.7
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH---HhcccceE-EEccccHHHHhcCCHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK---ISRHSAGS-YFANNVREAEETGRLG 89 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~---~~~~f~~~-~~~~~~~~~s~~~~~~ 89 (887)
.|...+.||||+.++++|.++|.....++++|+|+||||+||||||+++|++ ...+|... +|+. +.... .....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHHH
Confidence 4556678999999999999999876678899999999999999999999985 45666554 4663 21111 12234
Q ss_pred HHHHHHHHHHhcCCCCC----CCcccchHHHHHhhCCc--eEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 90 DLRQQLLSTLLNDGNVK----SFPNIGLNFQSKRLTRK--KVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 90 ~l~~~il~~l~~~~~~~----~~~~~~~~~~~~~l~~k--k~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
...+.++..+....... ...+...+.++..+.++ |+||||||||+.++|+.+ ++|||||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 44556666665543322 23344556666677666 999999999999887653 689999999999999
Q ss_pred hhh-cCCCceEecCC-CChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHhH-----------hh
Q 045202 164 LTN-CGVDEKYQMKE-LVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVFI-----------IE 230 (887)
Q Consensus 164 ~~~-~~~~~~~~v~~-L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~-----------l~ 230 (887)
+.. .+....++++. |+.+||++||...++.. .+++.+.+++|+++|+|+||||+++|..|+. +.
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~ 346 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQ 346 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHh
Confidence 854 45667899996 99999999999998443 3455678999999999999999999966653 22
Q ss_pred -cCC-----------Cce--EEEeeec------cccceeecccchhhhHH------HHhcc-------------------
Q 045202 231 -ITK-----------CKI--EIKINLI------LLLILDIRMHADDELLM------IASAD------------------- 265 (887)
Q Consensus 231 -~~~-----------~~i--~l~~sy~------k~~fl~~a~~~~~~~~~------~l~~~------------------- 265 (887)
... ..+ ++++||+ |.||+|||+||+++.+. +....
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEE
Confidence 111 123 7888999 99999999998774322 11100
Q ss_pred -CCc---eEeeCCchhhHHHHHHHHHhhh
Q 045202 266 -AYL---NFFVHFATHMFHAMGREVVRQE 290 (887)
Q Consensus 266 -~~~---~i~mh~a~~ll~~~~~~iv~~~ 290 (887)
..+ .+.|| +++++++++...++
T Consensus 427 ~~~~~~~~~~~h---~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRNGKSFCYYLH---DLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EESSSSEEEECC---HHHHHHHHHHTGGG
T ss_pred ecCCCceEEEec---HHHHHHHHhhhhHH
Confidence 122 49999 99999987765543
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-26 Score=275.40 Aligned_cols=304 Identities=13% Similarity=0.118 Sum_probs=255.5
Q ss_pred CCeeEEEecCCCCCCCCCCC--CCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEE
Q 045202 345 TEVRYLHWHRYPLKSLPSNI--HPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAIL 421 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 421 (887)
.+++.++++++.+..+|..+ .+++|+.|+|++|.++.++ ..+..+++|+.|++++|. +... ++..++.+++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYL-PPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCC-CHHHHcCCCCCCEE
Confidence 78899999999999999875 6899999999999999887 588999999999999987 4443 35667899999999
Q ss_pred EecCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCc
Q 045202 422 NLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLK 498 (887)
Q Consensus 422 ~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 498 (887)
+|++|.+.+..+..+ ++++|++|+|++|......|..+. ++|++|+|++|.+..++ ++.+++|+.|++++|.+.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 999998775555555 599999999999865555554444 89999999999999886 6778999999999986543
Q ss_pred cCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccC
Q 045202 499 SLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDG 578 (887)
Q Consensus 499 ~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 578 (887)
+...++|+.|++++|.+... |..+ .++|+.|++++|.++.. ..+..+++|+.|++++|.+... .|..+..
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~ 276 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKI-MYHPFVK 276 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEE-ESGGGTT
T ss_pred -----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCC-CHHHhcC
Confidence 34567899999999886543 3322 36899999999999974 6789999999999999987643 4677899
Q ss_pred CCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceE
Q 045202 579 LQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHG 658 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~ 658 (887)
+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.. ..+| ...+++|+.
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l----~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI----VTLK---LSTHHTLKN 349 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC----CCCC---CCTTCCCSE
T ss_pred ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC----CCcC---hhhcCCCCE
Confidence 999999999999999999888899999999999999999999999999999999999973 2333 236799999
Q ss_pred ecccCCCCCCC
Q 045202 659 TGIIRRFIPNS 669 (887)
Q Consensus 659 L~l~~N~l~~~ 669 (887)
|++++|.+.+.
T Consensus 350 L~l~~N~~~~~ 360 (597)
T 3oja_B 350 LTLSHNDWDCN 360 (597)
T ss_dssp EECCSSCEEHH
T ss_pred EEeeCCCCCCh
Confidence 99999998753
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.3e-26 Score=252.13 Aligned_cols=286 Identities=18% Similarity=0.240 Sum_probs=175.7
Q ss_pred CccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccC-CCCccEEEe
Q 045202 368 KLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-LGLLKELNL 446 (887)
Q Consensus 368 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~L 446 (887)
+++.++++++.++.+|..+ .++|+.|++++|. +... .+..+..+++|++|++++|.+.+..|..+. +++|++|+|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND-ISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCCc-CCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777777777777776544 2466666666655 2222 123445566666666666655554454442 555555555
Q ss_pred ecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCC--CCC
Q 045202 447 SGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNL--QRL 524 (887)
Q Consensus 447 ~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~--~~~ 524 (887)
++ |.+..+|..+. ++|++|++++|.+....+..+.++++|++|++++|.+. +..
T Consensus 110 ~~----------------------n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 110 SK----------------------NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp CS----------------------SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred CC----------------------CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 55 44444554433 55666666665544444444556666666666666553 244
Q ss_pred chhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCC
Q 045202 525 PEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLS 603 (887)
Q Consensus 525 p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~ 603 (887)
|..+..+ +|+.|++++|.++.+|..+. ++|+.|++++|.+.... +..+..+++|+.|++++|.+++++ ..+..++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred cccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCC
Confidence 5555555 66677777777666665443 56677777666655432 344667777777888887777754 3677778
Q ss_pred CCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccc------cCccceEecccCCCCC--CCCcchhh
Q 045202 604 SVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLV------GCASLHGTGIIRRFIP--NSSESDFL 675 (887)
Q Consensus 604 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~------~~~~L~~L~l~~N~l~--~~~~~~~~ 675 (887)
+|+.|+|++|+++.+|.++..+++|+.|+|++|+ +..++...+. ..++|+.|++.+|.+. .+.+..|.
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~----l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN----ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC----CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCCC----CCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 8888888888888888777788888888888775 3333333321 2466777888887777 56666777
Q ss_pred hhcccCcccCCCCC
Q 045202 676 DLYLSDNFKLDPND 689 (887)
Q Consensus 676 ~l~~l~~l~L~~N~ 689 (887)
.+..++.++|++|.
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 77777777777664
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=7.3e-26 Score=247.90 Aligned_cols=288 Identities=19% Similarity=0.248 Sum_probs=148.2
Q ss_pred CCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccC-CCCccEEE
Q 045202 367 EKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIH-LGLLKELN 445 (887)
Q Consensus 367 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~-l~~L~~L~ 445 (887)
.+++.++++++.++.+|..+. ++|+.|++++|+ +..++ +..+..+++|++|+|++|.+.+..|..+. +++|++|+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK-ITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCc-CCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 367788888888887775443 567777777765 33332 33456677777777777776666566553 67777777
Q ss_pred eecCCCCCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCC
Q 045202 446 LSGCSKLKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRL 524 (887)
Q Consensus 446 L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~ 524 (887)
|++|. +..+|....++|++|++++|.+..++.. +.++++|+.|++++|.+.. .+..
T Consensus 107 Ls~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 163 (330)
T 1xku_A 107 LSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE 163 (330)
T ss_dssp CCSSC-CSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred CCCCc-CCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcC
Confidence 76653 3344444334555555555555544433 4445555555555544321 1133
Q ss_pred chhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCC
Q 045202 525 PEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLS 603 (887)
Q Consensus 525 p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~ 603 (887)
+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.+... .+..+..+++|+.|++++|.+++++ ..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 3344444444444444444444444332 4445555544443322 1233445555555555555555433 2445555
Q ss_pred CCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccc------cCccceEecccCCCCCC--CCcchhh
Q 045202 604 SVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLV------GCASLHGTGIIRRFIPN--SSESDFL 675 (887)
Q Consensus 604 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~------~~~~L~~L~l~~N~l~~--~~~~~~~ 675 (887)
+|++|+|++|+++.+|.++..+++|++|+|++|+ +..++...+. ..++|+.+++++|.+.. +.+..|.
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~----i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN----ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC----CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCCc----CCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 5555555555555555555555555555555554 2222222221 22455555555555543 3444555
Q ss_pred hhcccCcccCCCC
Q 045202 676 DLYLSDNFKLDPN 688 (887)
Q Consensus 676 ~l~~l~~l~L~~N 688 (887)
.+..++.++|++|
T Consensus 317 ~~~~l~~l~L~~N 329 (330)
T 1xku_A 317 CVYVRAAVQLGNY 329 (330)
T ss_dssp TCCCGGGEEC---
T ss_pred cccceeEEEeccc
Confidence 5555555555554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=4.9e-26 Score=249.50 Aligned_cols=286 Identities=17% Similarity=0.216 Sum_probs=174.0
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEe
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNL 423 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L 423 (887)
.+++.++++++.++.+|..+ .++|+.|++++|.++.++ ..+..+++|+.|++++|.. .. ..+..+..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~-~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SK-IHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CE-ECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-Cc-cCHhHhhCcCCCCEEEC
Confidence 36899999999999999877 579999999999999986 5799999999999999873 32 23566789999999999
Q ss_pred cCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCC--ccC
Q 045202 424 SGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTL--KSL 500 (887)
Q Consensus 424 ~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~--~~l 500 (887)
++|.+. .+|..+. ++|++|++++| .+..+|.. +..+++|+.|++++|.+. +..
T Consensus 110 ~~n~l~-~l~~~~~-~~L~~L~l~~n----------------------~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP-SSLVELRIHDN----------------------RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp CSSCCC-SCCSSCC-TTCCEEECCSS----------------------CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred CCCcCC-ccCcccc-ccCCEEECCCC----------------------ccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 999865 5555433 56666666664 34444433 455555555555555542 234
Q ss_pred CcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCC-ccccCCCCCCEEEccccCCCcccccccccCC
Q 045202 501 PSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVP-PSIVRLKRVRGIYLGRNRGLSLPITFSVDGL 579 (887)
Q Consensus 501 p~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l 579 (887)
|..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.+.... +..+..+
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l 240 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFL 240 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGC
T ss_pred cccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCC
Confidence 4444444 55555555554333 333332 45555555555555444 34555555555555555544321 2235555
Q ss_pred CcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch-hhhc------CCCccEeeccccccccccCCCccccccc
Q 045202 580 QNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE-SIIQ------LSNLKSLFIRYCERLQFLPKLPCNLLVG 652 (887)
Q Consensus 580 ~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~-~l~~------l~~L~~L~L~~c~~l~~lp~lp~~l~~~ 652 (887)
++|+.|++++|.++.+|..+..+++|+.|++++|+++.+|. .+.. .+.|+.|++++|+.. ....++..+..
T Consensus 241 ~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~--~~~~~~~~~~~ 318 (332)
T 2ft3_A 241 PTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP--YWEVQPATFRC 318 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC--GGGSCGGGGTT
T ss_pred CCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc--ccccCcccccc
Confidence 66666666666666666556666666666666666665542 2221 245566666666522 01223333345
Q ss_pred CccceEecccCC
Q 045202 653 CASLHGTGIIRR 664 (887)
Q Consensus 653 ~~~L~~L~l~~N 664 (887)
+++|+.+++++|
T Consensus 319 l~~L~~l~l~~n 330 (332)
T 2ft3_A 319 VTDRLAIQFGNY 330 (332)
T ss_dssp BCCSTTEEC---
T ss_pred cchhhhhhcccc
Confidence 566666665554
No 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=9.6e-28 Score=282.85 Aligned_cols=218 Identities=14% Similarity=0.093 Sum_probs=163.6
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHH--HHhcccce-EEEccccHHHHhcCCHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFN--KISRHSAG-SYFANNVREAEETGRLGDLRQQL 95 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~f~~-~~~~~~~~~~s~~~~~~~l~~~i 95 (887)
+..|||+.++++|.++|... +++++|+|+||||+||||||+++|+ +++.+|+. ++|+ .++...+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WV----sVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL----NLKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEE----ECCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEE----EeCCCCCHHHHHHHH
Confidence 34599999999999999853 3479999999999999999999997 58899997 7787 345556666777776
Q ss_pred HHHHhcCC---CCCC--------CcccchHHHHHhh---CCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCCh
Q 045202 96 LSTLLNDG---NVKS--------FPNIGLNFQSKRL---TRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDR 161 (887)
Q Consensus 96 l~~l~~~~---~~~~--------~~~~~~~~~~~~l---~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~ 161 (887)
+..+.... .... +.+.....+++.+ .+||+||||||||+.++|+.+. +|||||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 66443211 0000 1122344556654 7899999999999999998752 799999999999
Q ss_pred hhhhhcCCCceEecC------CCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHhHh------
Q 045202 162 QLLTNCGVDEKYQMK------ELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVFII------ 229 (887)
Q Consensus 162 ~v~~~~~~~~~~~v~------~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~l------ 229 (887)
.++..+.....|+|+ .|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+..
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 998654333467777 999999999999984 322 22344444 999999999999877654
Q ss_pred -h-cCCCce--EEEeeec-------cccceeecccchhh
Q 045202 230 -E-ITKCKI--EIKINLI-------LLLILDIRMHADDE 257 (887)
Q Consensus 230 -~-~~~~~i--~l~~sy~-------k~~fl~~a~~~~~~ 257 (887)
+ .....+ ++++||+ |.||++||+||+++
T Consensus 347 W~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~ 385 (1221)
T 1vt4_I 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385 (1221)
T ss_dssp HHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTS
T ss_pred HhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCC
Confidence 1 222344 8889999 78999999998764
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5.8e-25 Score=240.74 Aligned_cols=282 Identities=19% Similarity=0.232 Sum_probs=212.5
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchh-hhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEe
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFD-SVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNL 423 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L 423 (887)
.+++.++++++.++.+|..+ +++++.|++++|.++.++. .+..+++|++|++++|.. ... .+..+..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKI-SPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-CCB-CTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC-Cee-CHHHhcCCCCCCEEEC
Confidence 46889999999999999876 4789999999999999874 789999999999999873 332 3456788999999999
Q ss_pred cCCCCCCCCCCccCCCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCC---CCCcchhcCCCCcEEecccCCCCc
Q 045202 424 SGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPE---ELPSSIECLSKLLHLDLVDCKTLK 498 (887)
Q Consensus 424 ~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~ 498 (887)
++|.+. .+|..+ .++|++|++++|......+..+. ++|++|++++|.+. ..+..+..+++|+.|++++|.+.
T Consensus 108 s~n~l~-~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 108 SKNQLK-ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp CSSCCS-BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCCcCC-ccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 999865 566544 38999999999754433333233 89999999999997 44667899999999999998754
Q ss_pred cCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCccccccccc
Q 045202 499 SLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVD 577 (887)
Q Consensus 499 ~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 577 (887)
.+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+. .+|..+.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLA 260 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhc
Confidence 5666543 789999999988877778888888888888888888886654 6777777777777777766 4555667
Q ss_pred CCCcccEEecccCCCCCcccc-cc------CCCCCcEEEcCCCCCc---ccchhhhcCCCccEeecccc
Q 045202 578 GLQNLLDLSLNDCCIMELPES-LG------LLSSVRELHLNGNNFE---RIPESIIQLSNLKSLFIRYC 636 (887)
Q Consensus 578 ~l~~L~~L~Ls~n~l~~lp~~-~~------~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~c 636 (887)
.+++|+.|++++|.++++|.. +. ..++|+.|++++|.+. ..|..+..+.+|+.++|++|
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 777777777777777765532 22 2356677777777665 22345666677777777666
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=7.2e-26 Score=245.68 Aligned_cols=246 Identities=18% Similarity=0.268 Sum_probs=185.1
Q ss_pred CCCcEEEecCCCCCC--CCCCccC-CCCccEEEeec-CCCCCCCccccc--CCccEEEccCCCCC-CCCcchhcCCCCcE
Q 045202 416 NKLAILNLSGRKNLQ--SLPARIH-LGLLKELNLSG-CSKLKRLPEISS--GNIETMRLDGTAPE-ELPSSIECLSKLLH 488 (887)
Q Consensus 416 ~~L~~L~L~~~~~~~--~lp~~~~-l~~L~~L~L~~-~~~l~~lp~~~~--~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 488 (887)
.+++.|+|++|.+.+ .+|..+. +++|++|+|++ |.....+|..+. ++|++|+|++|.+. .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666777766666 5666553 77777777774 444445554443 66666666667776 67777888888888
Q ss_pred EecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCC-CCceeeccCccCc-cCCccccCCCCCCEEEccccC
Q 045202 489 LDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQ-ALDSLHAVGTAIT-EVPPSIVRLKRVRGIYLGRNR 566 (887)
Q Consensus 489 L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~n~ 566 (887)
|+|++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..++ +|+.|++++|.++ .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888887778888888888888888888888778888888887 8888888888887 6777787776 8888888887
Q ss_pred CCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCc-ccchhhhcCCCccEeeccccccccccCCC
Q 045202 567 GLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKL 645 (887)
Q Consensus 567 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l 645 (887)
+.. ..|..+..+++|+.|+|++|.++..+..+..+++|++|+|++|+++ .+|.++..+++|+.|+|++|+..+.+|..
T Consensus 209 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEG-DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEE-CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccC-cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 553 3566678888888888888888875556778888888888888888 78888888888888888888776666654
Q ss_pred cccccccCccceEecccCCC-CCC
Q 045202 646 PCNLLVGCASLHGTGIIRRF-IPN 668 (887)
Q Consensus 646 p~~l~~~~~~L~~L~l~~N~-l~~ 668 (887)
..+++|+.+++++|. +.+
T Consensus 288 -----~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 -----GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -----TTGGGSCGGGTCSSSEEES
T ss_pred -----ccccccChHHhcCCCCccC
Confidence 245777777777776 443
No 49
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=273.95 Aligned_cols=228 Identities=17% Similarity=0.170 Sum_probs=165.9
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH---hcccc-eEEEccccHHHHhcCCHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI---SRHSA-GSYFANNVREAEETGRLG 89 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~---~~~f~-~~~~~~~~~~~s~~~~~~ 89 (887)
.|.....+|||+.++++|.++|.....+.++|+|+||||+||||||+++|++. ..+|+ +++|+.. +.. +..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~----~~~-~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV----GKQ-DKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE----ESC-CHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC----CCC-chH
Confidence 45667789999999999999998655678999999999999999999999853 78895 6788742 211 222
Q ss_pred HHHHH---HHHHHhcCCC----CCCCcccchHHHHHhhCC--ceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCC
Q 045202 90 DLRQQ---LLSTLLNDGN----VKSFPNIGLNFQSKRLTR--KKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRD 160 (887)
Q Consensus 90 ~l~~~---il~~l~~~~~----~~~~~~~~~~~~~~~l~~--kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~ 160 (887)
.+... +...+..... ...+.+.....+++.+.+ +++||||||||+..+++. +++|++||||||+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCC
Confidence 33333 3333332111 112333445566666655 789999999999877653 3679999999999
Q ss_pred hhhhhhcCCCceEec---CCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHHHhHh--------
Q 045202 161 RQLLTNCGVDEKYQM---KELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQAVFII-------- 229 (887)
Q Consensus 161 ~~v~~~~~~~~~~~v---~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~L~~l-------- 229 (887)
+.++..+. ...|++ ++|+.+||++||...++.. .....+.+.+|+++|+|+|||++++|..+...
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l 342 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYL 342 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHH
Confidence 99887653 455666 4899999999999998642 23345678999999999999999999665432
Q ss_pred ---h-cC-----------CCce--EEEeeec------cccceeecccchhh
Q 045202 230 ---E-IT-----------KCKI--EIKINLI------LLLILDIRMHADDE 257 (887)
Q Consensus 230 ---~-~~-----------~~~i--~l~~sy~------k~~fl~~a~~~~~~ 257 (887)
. .. ...+ ++..||+ |.||+++|+|+.++
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~ 393 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDV 393 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTC
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCC
Confidence 2 11 0123 6778888 99999999997753
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=3e-26 Score=248.68 Aligned_cols=244 Identities=19% Similarity=0.228 Sum_probs=189.1
Q ss_pred CccEEEccCCCCC---CCCcchhcCCCCcEEeccc-CCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCcee
Q 045202 462 NIETMRLDGTAPE---ELPSSIECLSKLLHLDLVD-CKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSL 537 (887)
Q Consensus 462 ~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~-~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L 537 (887)
+++.|+|+++.+. .+|..+.++++|++|+|++ |.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 3444555555555 4777788888888888884 77777888888888888888888888777888888888888888
Q ss_pred eccCccCc-cCCccccCCCCCCEEEccccCCCcccccccccCCC-cccEEecccCCCCC-ccccccCCCCCcEEEcCCCC
Q 045202 538 HAVGTAIT-EVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQ-NLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNN 614 (887)
Q Consensus 538 ~L~~n~i~-~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~ 614 (887)
++++|.+. .+|..+..+++|++|++++|.+. ..+|..+..++ +|+.|++++|.+++ +|..+..++ |+.|++++|+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCccc-CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888 67778888888888888888754 34566677777 88888888888874 777777776 8888888888
Q ss_pred Cc-ccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcc
Q 045202 615 FE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 615 l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i 693 (887)
++ ..|..+..+++|+.|+|++|...+.+|. ...+++|++|++++|.+++..+..+..+..|+.|+|++|.+++.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 87 5667778888888888888875444433 23568888888888888877888888888888888888888887
Q ss_pred hhHHHHHhHHHHHHhhhhhh
Q 045202 694 FKGALQKIQLLATARLKEAR 713 (887)
Q Consensus 694 ~~~~~~~l~~L~~l~l~~n~ 713 (887)
+|.. ..++.|+.+++.+|.
T Consensus 284 ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSS
T ss_pred CCCC-ccccccChHHhcCCC
Confidence 7765 677888888887773
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.7e-24 Score=236.30 Aligned_cols=230 Identities=23% Similarity=0.335 Sum_probs=114.6
Q ss_pred CCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCccccc--CCccEEEccCCCCCCCCcchhcCCCCcEEec
Q 045202 415 LNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAPEELPSSIECLSKLLHLDL 491 (887)
Q Consensus 415 l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 491 (887)
..+++.|+|++|.+. .+|..+ ++++|++|+|++|... .+|..+. ++|++|+|++|.+..+|..+.++++|++|+|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 466777777777755 555544 3777777777765432 4443322 4455555555554444444444555555555
Q ss_pred ccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCccc
Q 045202 492 VDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLP 571 (887)
Q Consensus 492 ~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~ 571 (887)
++|...+.+|..+... .++..++.+++|++|++++|.++.+|..+..+++|+.|++++|.+. .
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~--~ 220 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--A 220 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC--C
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC--c
Confidence 5444444444433320 0000011255555555555555555555555555555555555444 2
Q ss_pred ccccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCc-ccchhhhcCCCccEeeccccccccccCCCcccc
Q 045202 572 ITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNL 649 (887)
Q Consensus 572 ~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l 649 (887)
+|..+..+++|+.|+|++|++.+ +|..++.+++|++|+|++|++. .+|..+..+++|++|+|++|+.++.+|....
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-- 298 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-- 298 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG--
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh--
Confidence 33344555555555555554443 4555555555555555554433 5555555555555555555554444442211
Q ss_pred cccCccceEecccCCCCC
Q 045202 650 LVGCASLHGTGIIRRFIP 667 (887)
Q Consensus 650 ~~~~~~L~~L~l~~N~l~ 667 (887)
++++|+.+.++.|.+.
T Consensus 299 --~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 --QLPANCIILVPPHLQA 314 (328)
T ss_dssp --GSCTTCEEECCGGGSC
T ss_pred --hccCceEEeCCHHHHH
Confidence 3445555555444333
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.3e-23 Score=246.70 Aligned_cols=257 Identities=22% Similarity=0.236 Sum_probs=153.9
Q ss_pred CeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecC
Q 045202 346 EVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSG 425 (887)
Q Consensus 346 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~ 425 (887)
+++.|+++++.++.+|..+. ++|+.|+|++|.++.+|. .+++|++|++++|+ +..++. .+++|++|+|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEECcC
Confidence 36778888888888887664 788888888888887766 46777777777765 344432 556777777777
Q ss_pred CCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccC
Q 045202 426 RKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLG 505 (887)
Q Consensus 426 ~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~ 505 (887)
|.+.+ +|. .+++|+.|++++|. +..+|... ++|++|+|++|.+..+|.. +.+|+.|++++|.+. .+| .
T Consensus 111 N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~l-~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~---~ 178 (622)
T 3g06_A 111 NPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVLP-PGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT-SLP---M 178 (622)
T ss_dssp CCCCC-CCC--CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCC---C
T ss_pred CcCCC-CCC--CCCCcCEEECCCCC-CCcCCCCC-CCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCC-CCc---c
Confidence 66443 333 45666666666653 44444422 5666666666666665542 345666666665533 244 2
Q ss_pred CCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEE
Q 045202 506 KLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDL 585 (887)
Q Consensus 506 ~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 585 (887)
.+++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|.. +++|+.|++++|.+... | ..+++|+.|
T Consensus 179 ~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~l--p---~~l~~L~~L 246 (622)
T 3g06_A 179 LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSL--P---VLPSELKEL 246 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC--C---CCCTTCCEE
T ss_pred cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcC--C---CCCCcCcEE
Confidence 45566666666655433 3332 34566666666666655542 35566666666655432 2 234556666
Q ss_pred ecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccc
Q 045202 586 SLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERL 639 (887)
Q Consensus 586 ~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 639 (887)
+|++|.++.+|. .+++|+.|+|++|+|+.+|..+.++++|+.|+|++|+..
T Consensus 247 ~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 247 MVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred ECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 666666665554 445566666666666666655666666666666666533
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.7e-24 Score=236.35 Aligned_cols=223 Identities=19% Similarity=0.218 Sum_probs=164.9
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
++.|+|++|.+..+|..+.++++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 33444444445555655666666666666665544 55655666666666666665544 55656666666666666664
Q ss_pred cCc-cCCccc---------cCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCC
Q 045202 543 AIT-EVPPSI---------VRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNG 612 (887)
Q Consensus 543 ~i~-~lp~~l---------~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~ 612 (887)
.+. .+|..+ ..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.++++|..++.+++|++|+|++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 333 455444 45899999999999877 567778899999999999999999988899999999999999
Q ss_pred CCCc-ccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCC
Q 045202 613 NNFE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLG 691 (887)
Q Consensus 613 n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~ 691 (887)
|++. .+|..+..+++|++|+|++|..++.+|... .++++|+.|++++|.+.+..|..+..+..++.+++..|.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~----~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI----HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG----GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh----hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8776 788889999999999999998877776432 37789999999999999988999999998988888877665
Q ss_pred cc
Q 045202 692 GI 693 (887)
Q Consensus 692 ~i 693 (887)
.+
T Consensus 315 ~l 316 (328)
T 4fcg_A 315 QL 316 (328)
T ss_dssp C-
T ss_pred HH
Confidence 54
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=6.4e-23 Score=240.98 Aligned_cols=268 Identities=22% Similarity=0.257 Sum_probs=173.4
Q ss_pred CccEEEcCCCCCccchhhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEee
Q 045202 368 KLVLLKMPHSNIEQVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLS 447 (887)
Q Consensus 368 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~ 447 (887)
+++.|++++|.++.+|..+. ++|+.|++++|+ +..++. .+++|++|+|++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-------------------- 92 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-------------------- 92 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC--------------------
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc--------------------
Confidence 46667777776666665443 455555555554 222222 23444444444444
Q ss_pred cCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchh
Q 045202 448 GCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEE 527 (887)
Q Consensus 448 ~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~ 527 (887)
+..+|. ..++|++|+|++|.++.+|. .+++|+.|++++|.+. .+|.. +++|++|++++|.+.+ +|.
T Consensus 93 ----l~~lp~-~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~- 158 (622)
T 3g06_A 93 ----LTSLPV-LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA- 158 (622)
T ss_dssp ----CSCCCC-CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC-
T ss_pred ----CCcCCC-CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC-
Confidence 333443 22455555555555556655 4566666666666533 34542 3667777777765443 343
Q ss_pred hcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcE
Q 045202 528 LGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRE 607 (887)
Q Consensus 528 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~ 607 (887)
.+++|+.|++++|.++.+| ..+++|+.|++++|.+.. +|. .+++|+.|++++|.++.+|.. +++|+.
T Consensus 159 --~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~--l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~ 225 (622)
T 3g06_A 159 --LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS--LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKE 225 (622)
T ss_dssp --CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCE
T ss_pred --ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC--CCC---ccchhhEEECcCCcccccCCC---CCCCCE
Confidence 2456777777777777776 446777777777777664 222 246788888888888877753 477888
Q ss_pred EEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCC
Q 045202 608 LHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDP 687 (887)
Q Consensus 608 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~ 687 (887)
|+|++|+++.+| ..+++|+.|+|++|. +..+|. .+++|+.|++++|.|+.+ |..+..++.|+.++|++
T Consensus 226 L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~-L~~lp~-------~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 226 LIVSGNRLTSLP---VLPSELKELMVSGNR-LTSLPM-------LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEG 293 (622)
T ss_dssp EECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-------CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCS
T ss_pred EEccCCccCcCC---CCCCcCcEEECCCCC-CCcCCc-------ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecC
Confidence 888888888887 456788888888885 334443 357788888888888855 55678888899999999
Q ss_pred CCCCcchhHHHHHhH
Q 045202 688 NDLGGIFKGALQKIQ 702 (887)
Q Consensus 688 N~l~~i~~~~~~~l~ 702 (887)
|.+++..+..+..++
T Consensus 294 N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 294 NPLSERTLQALREIT 308 (622)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhcc
Confidence 999998887776664
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.5e-23 Score=239.05 Aligned_cols=247 Identities=21% Similarity=0.249 Sum_probs=211.8
Q ss_pred CccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCC-cchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCC
Q 045202 440 LLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELP-SSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGC 518 (887)
Q Consensus 440 ~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~ 518 (887)
..+.++.++ ..+..+|.....+++.|+|++|.+..++ ..+.++++|+.|+|++|.+....+..|.++++|++|+|++|
T Consensus 44 ~~~~v~c~~-~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVR-KNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCS-CCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCC-CCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 345666665 4677788777788999999999999887 45999999999999999988777788999999999999999
Q ss_pred CCCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc
Q 045202 519 SNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE 597 (887)
Q Consensus 519 ~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 597 (887)
.+....+..+..+++|++|++++|.+..+|. .+..+++|+.|+++.|.......+..+.++++|+.|+|++|.++++|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 8877666789999999999999999998876 788999999999977543333334468899999999999999999984
Q ss_pred cccCCCCCcEEEcCCCCCccc-chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhh
Q 045202 598 SLGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLD 676 (887)
Q Consensus 598 ~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~ 676 (887)
+..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|. +..+++..+.++++|+.|++++|.++.+.+..|..
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ----IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC----CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc----eeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 78899999999999999966 6789999999999999997 44445555568899999999999999999999999
Q ss_pred hcccCcccCCCCCCCc
Q 045202 677 LYLSDNFKLDPNDLGG 692 (887)
Q Consensus 677 l~~l~~l~L~~N~l~~ 692 (887)
+..|+.++|++|.+..
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 9999999999999854
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=8.2e-27 Score=267.95 Aligned_cols=347 Identities=15% Similarity=0.098 Sum_probs=206.5
Q ss_pred CeeEEEecCCCCCCCCCC--C-CCCCccEEEcCCCCCc-----cchhhhcCCccCceeecCcCcCCCCCCCCcccccCC-
Q 045202 346 EVRYLHWHRYPLKSLPSN--I-HPEKLVLLKMPHSNIE-----QVFDSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLN- 416 (887)
Q Consensus 346 ~Lr~L~l~~~~l~~lp~~--~-~~~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~- 416 (887)
++++|+++++.+...+.. + .+++|+.|++++|.+. .++..+..+++|++|++++|.. .......+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-HHHHHHHHHHTTCS
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-ChHHHHHHHHHHhh
Confidence 466677777666543321 2 4567777777777776 3345566677777777777652 1111112223344
Q ss_pred ---CCcEEEecCCCCCC----CCCCcc-CCCCccEEEeecCCCCCCCcc----ccc---CCccEEEccCCCCCC-----C
Q 045202 417 ---KLAILNLSGRKNLQ----SLPARI-HLGLLKELNLSGCSKLKRLPE----ISS---GNIETMRLDGTAPEE-----L 476 (887)
Q Consensus 417 ---~L~~L~L~~~~~~~----~lp~~~-~l~~L~~L~L~~~~~l~~lp~----~~~---~~L~~L~L~~~~i~~-----l 476 (887)
+|++|+|++|.+.. .+|..+ .+++|++|+|++|......+. ... .+|++|++++|.++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777777553 345555 377777777777652211111 111 357777777777764 3
Q ss_pred CcchhcCCCCcEEecccCCCCccCCcccC-----CCCCCcEEEeeCCCCCCC----CchhhcCCCCCceeeccCccCccC
Q 045202 477 PSSIECLSKLLHLDLVDCKTLKSLPSGLG-----KLKSLGILSIDGCSNLQR----LPEELGNLQALDSLHAVGTAITEV 547 (887)
Q Consensus 477 p~~i~~l~~L~~L~L~~~~~~~~lp~~l~-----~L~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~L~~n~i~~l 547 (887)
+..+..+++|+.|++++|.+....+..+. .+++|++|++++|.+... ++..+..+++|++|++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45566677777777777765443332222 255777777777766553 466666777777777777776632
Q ss_pred -----Cc-cccCCCCCCEEEccccCCCccc---ccccccCCCcccEEecccCCCCC-----cccccc-CCCCCcEEEcCC
Q 045202 548 -----PP-SIVRLKRVRGIYLGRNRGLSLP---ITFSVDGLQNLLDLSLNDCCIME-----LPESLG-LLSSVRELHLNG 612 (887)
Q Consensus 548 -----p~-~l~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~~~-~l~~L~~L~L~~ 612 (887)
.+ .+..+++|+.|++++|.+.... ++..+..+++|++|++++|.+.+ +...+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 12 2235677777777777665432 45556667777777777777754 222222 235777777777
Q ss_pred CCCcc-----cchhhhcCCCccEeeccccccccccC-CCcccccccCccceEecccCCCCCC----CCcchhhhhcccCc
Q 045202 613 NNFER-----IPESIIQLSNLKSLFIRYCERLQFLP-KLPCNLLVGCASLHGTGIIRRFIPN----SSESDFLDLYLSDN 682 (887)
Q Consensus 613 n~l~~-----lp~~l~~l~~L~~L~L~~c~~l~~lp-~lp~~l~~~~~~L~~L~l~~N~l~~----~~~~~~~~l~~l~~ 682 (887)
|.++. +|..+..+++|++|+|++|......+ .+...+...+++|+.|++++|.+++ ..+..+..++.|+.
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 77763 45666677777777777775222111 1111111125677777777777764 34445555677777
Q ss_pred ccCCCCCCCcc
Q 045202 683 FKLDPNDLGGI 693 (887)
Q Consensus 683 l~L~~N~l~~i 693 (887)
++|++|.++..
T Consensus 403 L~l~~N~i~~~ 413 (461)
T 1z7x_W 403 LDLSNNCLGDA 413 (461)
T ss_dssp EECCSSSCCHH
T ss_pred EECCCCCCCHH
Confidence 77777777654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.3e-23 Score=238.31 Aligned_cols=247 Identities=22% Similarity=0.250 Sum_probs=208.9
Q ss_pred ccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCC-cchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC
Q 045202 441 LKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELP-SSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS 519 (887)
Q Consensus 441 L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~ 519 (887)
...++.++ ..+..+|....+++++|+|++|.+..++ ..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 56 ~~~v~c~~-~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCS-SCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECC-CCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 45566655 4566777666678999999999998775 459999999999999999888888899999999999999998
Q ss_pred CCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcccc
Q 045202 520 NLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPES 598 (887)
Q Consensus 520 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 598 (887)
+....+..+..+++|++|++++|.+..+|. .+..+++|+.|+++.|.......+..+.++++|+.|+|++|.++++| .
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-C
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-c
Confidence 887777779999999999999999998876 78899999999997744333223445889999999999999999987 4
Q ss_pred ccCCCCCcEEEcCCCCCccc-chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhh
Q 045202 599 LGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDL 677 (887)
Q Consensus 599 ~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l 677 (887)
+..+++|+.|+|++|+++.+ |..+.++++|+.|+|++|. +..+++..+.++++|+.|++++|.|+++.+..|..+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ----VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC----CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc----CceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 78899999999999999966 6789999999999999997 334444445588999999999999999999999999
Q ss_pred cccCcccCCCCCCCcc
Q 045202 678 YLSDNFKLDPNDLGGI 693 (887)
Q Consensus 678 ~~l~~l~L~~N~l~~i 693 (887)
..|+.++|++|.+..-
T Consensus 290 ~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEccCCCcCCC
Confidence 9999999999998654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=235.19 Aligned_cols=268 Identities=16% Similarity=0.178 Sum_probs=151.5
Q ss_pred CCeeEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchh-hhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEe
Q 045202 345 TEVRYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFD-SVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNL 423 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L 423 (887)
.....++++++.++.+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|. +... .+..+..+++|++|++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTI-EEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCcc-CHhhcCCCCCCCEEEC
Confidence 334457888888888887663 578888888888887763 56666666666666654 2211 1222334444444444
Q ss_pred cCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCc--chhcCCCCcEEecccCCCCc-c
Q 045202 424 SGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPS--SIECLSKLLHLDLVDCKTLK-S 499 (887)
Q Consensus 424 ~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~-~ 499 (887)
++|.+.+..+..+ ++ ++|++|++++|.+..+|. .+..+++|++|++++|...+ .
T Consensus 108 s~n~l~~~~~~~~~~l----------------------~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPL----------------------SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp CSSCCSSCCHHHHTTC----------------------TTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CCCcCCcCCHhHhCCC----------------------ccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 4444332211112 13 344444555555556665 46677777777777764333 3
Q ss_pred CCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccc-cCCCCCCEEEccccCCCcccccc--cc
Q 045202 500 LPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSI-VRLKRVRGIYLGRNRGLSLPITF--SV 576 (887)
Q Consensus 500 lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l-~~l~~L~~L~L~~n~~~~~~~~~--~~ 576 (887)
.|..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+..+|..+ ..+++|+.|++++|.+....... ..
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 3456677777777777777766666777777777777777777776665533 34666666666666655432111 01
Q ss_pred cCCCcccEEecccCCCCC-----ccccccCCCCCcEEEcCCCCCcccchhh-hcCCCccEeeccccc
Q 045202 577 DGLQNLLDLSLNDCCIME-----LPESLGLLSSVRELHLNGNNFERIPESI-IQLSNLKSLFIRYCE 637 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~c~ 637 (887)
...+.++.++++++.+.+ +|..+..+++|+.|+|++|+++.+|..+ ..+++|++|+|++|+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 223445555555554442 4445555555555555555555555442 455555555555554
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=3.7e-27 Score=270.87 Aligned_cols=348 Identities=15% Similarity=0.123 Sum_probs=260.7
Q ss_pred CCCccEEEcCCCCCccch--hhhcCCccCceeecCcCcCCCCC--CCCcccccCCCCcEEEecCCCCCCCCCCcc--CCC
Q 045202 366 PEKLVLLKMPHSNIEQVF--DSVQHYLKLNQIITAAFNFFSKT--PTPSLTQHLNKLAILNLSGRKNLQSLPARI--HLG 439 (887)
Q Consensus 366 ~~~L~~L~L~~n~i~~l~--~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~--~l~ 439 (887)
+++|++|+|+++++.... ..+..+++|+.|++++|..-... .-+..+..+++|++|+|++|.+....+..+ .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 467899999999998664 33788999999999998732110 113456778999999999998765433322 244
Q ss_pred ----CccEEEeecCCCCC----CCccccc--CCccEEEccCCCCCCC-Ccch-----hcCCCCcEEecccCCCCcc----
Q 045202 440 ----LLKELNLSGCSKLK----RLPEISS--GNIETMRLDGTAPEEL-PSSI-----ECLSKLLHLDLVDCKTLKS---- 499 (887)
Q Consensus 440 ----~L~~L~L~~~~~l~----~lp~~~~--~~L~~L~L~~~~i~~l-p~~i-----~~l~~L~~L~L~~~~~~~~---- 499 (887)
+|++|+|++|.... .++.... ++|++|+|++|.+... +..+ ...++|+.|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999986432 3344443 8999999999998743 2222 2356899999999987663
Q ss_pred CCcccCCCCCCcEEEeeCCCCCCCCchhhc-----CCCCCceeeccCccCcc-----CCccccCCCCCCEEEccccCCCc
Q 045202 500 LPSGLGKLKSLGILSIDGCSNLQRLPEELG-----NLQALDSLHAVGTAITE-----VPPSIVRLKRVRGIYLGRNRGLS 569 (887)
Q Consensus 500 lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~-----~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~n~~~~ 569 (887)
++..+..+++|++|++++|.+....+..+. .+++|++|++++|.++. ++..+..+++|+.|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 466677889999999999987654444333 36699999999999985 57788899999999999998764
Q ss_pred ccc----cccccCCCcccEEecccCCCCC-----ccccccCCCCCcEEEcCCCCCccc-chhhh-----cCCCccEeecc
Q 045202 570 LPI----TFSVDGLQNLLDLSLNDCCIME-----LPESLGLLSSVRELHLNGNNFERI-PESII-----QLSNLKSLFIR 634 (887)
Q Consensus 570 ~~~----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~~l-p~~l~-----~l~~L~~L~L~ 634 (887)
... +.....+++|+.|++++|.++. ++..+..+++|++|++++|.++.. +..+. ..++|++|+|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 322 2223468999999999999997 788888899999999999998732 22332 23799999999
Q ss_pred ccccccccC-CCcccccccCccceEecccCCCCCCCCcchhhh-----hcccCcccCCCCCCCc----chhHHHHHhHHH
Q 045202 635 YCERLQFLP-KLPCNLLVGCASLHGTGIIRRFIPNSSESDFLD-----LYLSDNFKLDPNDLGG----IFKGALQKIQLL 704 (887)
Q Consensus 635 ~c~~l~~lp-~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~-----l~~l~~l~L~~N~l~~----i~~~~~~~l~~L 704 (887)
+|.....-. .++. ....+++|+.|++++|.+++.....+.. ...++.|+|++|.+++ .++.++..+++|
T Consensus 322 ~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 322 SCSFTAACCSHFSS-VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TSCCBGGGHHHHHH-HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCchHHHHHHHH-HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 997432211 1222 1237899999999999998765555543 5689999999999997 678888889999
Q ss_pred HHHhhhhhhh
Q 045202 705 ATARLKEARE 714 (887)
Q Consensus 705 ~~l~l~~n~~ 714 (887)
+.+++++|..
T Consensus 401 ~~L~l~~N~i 410 (461)
T 1z7x_W 401 RELDLSNNCL 410 (461)
T ss_dssp CEEECCSSSC
T ss_pred cEEECCCCCC
Confidence 9999988844
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1e-23 Score=228.25 Aligned_cols=245 Identities=17% Similarity=0.184 Sum_probs=191.7
Q ss_pred cEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCc--cCCcccCCCCCCcEEEeeCC
Q 045202 442 KELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLK--SLPSGLGKLKSLGILSIDGC 518 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~--~lp~~l~~L~~L~~L~L~~~ 518 (887)
+.+++++ ..+..+|....++|++|+|++|.++.+|.. +.++++|+.|+|++|.+.. ..|..+..+++|++|++++|
T Consensus 10 ~~l~c~~-~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNS-KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCS-SCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCC-CCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 3455555 345666665557788888888888888876 6888889999998887653 23566677888999999888
Q ss_pred CCCCCCchhhcCCCCCceeeccCccCccCCc--cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC--
Q 045202 519 SNLQRLPEELGNLQALDSLHAVGTAITEVPP--SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-- 594 (887)
Q Consensus 519 ~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-- 594 (887)
.+. .+|..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+++
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCcccccc
Confidence 654 467778888899999999998887764 68888899999998887653 345567888899999999998876
Q ss_pred ccccccCCCCCcEEEcCCCCCccc-chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcch
Q 045202 595 LPESLGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESD 673 (887)
Q Consensus 595 lp~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~ 673 (887)
+|..+..+++|++|++++|+++.+ |..+..+++|++|+|++|. +..++...+.++++|+.|++++|.+++..+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN----FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC----CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc----cCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 788888899999999999998866 5678888999999999986 33344433457889999999999999888888
Q ss_pred hhhh-cccCcccCCCCCCCcc
Q 045202 674 FLDL-YLSDNFKLDPNDLGGI 693 (887)
Q Consensus 674 ~~~l-~~l~~l~L~~N~l~~i 693 (887)
+..+ ..++.++|++|.+++.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECS
T ss_pred HHhhhccCCEEEccCCCeecc
Confidence 8777 4888999999998775
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=231.67 Aligned_cols=256 Identities=15% Similarity=0.088 Sum_probs=177.1
Q ss_pred CCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEee
Q 045202 438 LGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSID 516 (887)
Q Consensus 438 l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~ 516 (887)
++.....++++ ..+..+|....++|++|++++|.++.+|. .+.++++|+.|++++|.+.+..|..|.++++|++|+++
T Consensus 30 C~~~~~c~~~~-~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 30 CDRNGICKGSS-GSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp ECTTSEEECCS-TTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCeEeeCCC-CCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 44444555555 34556666555677777777777777766 47777777777777777666666677777777777777
Q ss_pred CCCCCCCCchhhcCCCCCceeeccCccCccCCc--cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC
Q 045202 517 GCSNLQRLPEELGNLQALDSLHAVGTAITEVPP--SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME 594 (887)
Q Consensus 517 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 594 (887)
+|.+.+..+..++.+++|++|++++|.++.+|. .+..+++|++|++++|.......+..+.++++|+.|++++|.+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 776665444457777777777777777777766 567777777777776642222234456777777777777777776
Q ss_pred -ccccccCCCCCcEEEcCCCCCcccchhh-hcCCCccEeeccccccccccC----------------------------C
Q 045202 595 -LPESLGLLSSVRELHLNGNNFERIPESI-IQLSNLKSLFIRYCERLQFLP----------------------------K 644 (887)
Q Consensus 595 -lp~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~c~~l~~lp----------------------------~ 644 (887)
.|..+..+++|++|++++|.++.+|..+ ..+++|+.|+|++|...+..+ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 3667777777777777777777776543 347777777777775332111 1
Q ss_pred CcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchh
Q 045202 645 LPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFK 695 (887)
Q Consensus 645 lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~ 695 (887)
+|.. ..++++|+.|++++|.++.++...|..+..|+.++|++|.+.+..+
T Consensus 269 l~~~-l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHH-HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHH-HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1111 1367889999999999998777777888888899999999887654
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=3.6e-24 Score=231.78 Aligned_cols=247 Identities=17% Similarity=0.146 Sum_probs=213.2
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCC--CCchhhcCCCCCceeecc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQ--RLPEELGNLQALDSLHAV 540 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~--~~p~~l~~l~~L~~L~L~ 540 (887)
-+.++.+++.++.+|..+. ++|+.|+|++|.+....+..+.++++|++|++++|.+.. ..|..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3578999999999998654 799999999998664444457899999999999998763 346778889999999999
Q ss_pred CccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCcc--
Q 045202 541 GTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFER-- 617 (887)
Q Consensus 541 ~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~~-- 617 (887)
+|.+..+|..+..+++|++|++++|.+........+..+++|+.|++++|.+.. .|..+..+++|++|++++|.++.
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 999999999999999999999999988765544568899999999999999987 56678899999999999999985
Q ss_pred cchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHH
Q 045202 618 IPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGA 697 (887)
Q Consensus 618 lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~ 697 (887)
+|..+..+++|++|+|++|.. ..+++..+.++++|+.|++++|.+++..+..+..+..|+.++|++|.++++.+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQL----EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred chhHHhhCcCCCEEECCCCCc----CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 888999999999999999973 3343344457899999999999999998888999999999999999999999888
Q ss_pred HHHh-HHHHHHhhhhhhhc
Q 045202 698 LQKI-QLLATARLKEAREK 715 (887)
Q Consensus 698 ~~~l-~~L~~l~l~~n~~~ 715 (887)
+..+ +.|+.+++++|...
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 8887 48899999888544
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=4.2e-24 Score=232.31 Aligned_cols=261 Identities=16% Similarity=0.151 Sum_probs=196.8
Q ss_pred ccEEEcCCCCCccch-hhhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEee
Q 045202 369 LVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLS 447 (887)
Q Consensus 369 L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~ 447 (887)
+...+++.+.+...+ ..+..+++|+.|++++|.. ... .+..+..+++|++|+|++|.+.+..| ...+++|++|+|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC-CCC-CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc-CcC-CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 445556666666554 3344566777788777652 222 23456777788888888877655444 3358888888888
Q ss_pred cCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchh
Q 045202 448 GCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEE 527 (887)
Q Consensus 448 ~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~ 527 (887)
+|. +..++.. ++|++|++++|.+..++.. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..
T Consensus 89 ~n~-l~~l~~~--~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 89 NNY-VQELLVG--PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp SSE-EEEEEEC--TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCc-cccccCC--CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 864 3333321 6888888888888877654 3678999999998877777778888899999999998887766666
Q ss_pred h-cCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCc
Q 045202 528 L-GNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVR 606 (887)
Q Consensus 528 l-~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~ 606 (887)
+ ..+++|++|++++|.++.+|.. ..+++|+.|++++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+++|+
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~ 240 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred HhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhcCCCCC
Confidence 6 4788999999999998877543 358889999998888774 45558888999999999999998888888899999
Q ss_pred EEEcCCCCCc--ccchhhhcCCCccEeecccccccc
Q 045202 607 ELHLNGNNFE--RIPESIIQLSNLKSLFIRYCERLQ 640 (887)
Q Consensus 607 ~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~ 640 (887)
.|++++|.+. .+|.++..+++|+.|++++|+.+.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 9999999888 777888889999999998776543
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=7.4e-23 Score=218.99 Aligned_cols=221 Identities=21% Similarity=0.225 Sum_probs=130.2
Q ss_pred cEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC-
Q 045202 442 KELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS- 519 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~- 519 (887)
++++.++ ..+..+|....++|++|++++|.++.++. .+..+++|++|+|++|.+.+..|..+.++++|++|++++|.
T Consensus 14 ~~~~c~~-~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQ-QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCS-SCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCc-CCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 3444444 23445554444566666666666666654 36667777777777766655556666677777777777765
Q ss_pred CCCCCchhhcCCCCCceeeccCccCccC-CccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-
Q 045202 520 NLQRLPEELGNLQALDSLHAVGTAITEV-PPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE- 597 (887)
Q Consensus 520 ~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~- 597 (887)
+....|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.... +..+..+++|+.|++++|.++++|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-HhHhccCCCccEEECCCCcccccCHH
Confidence 3333356666677777777777766655 334566666666666666654322 2235556666666666666666543
Q ss_pred cccCCCCCcEEEcCCCCCccc-chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCC
Q 045202 598 SLGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPN 668 (887)
Q Consensus 598 ~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~ 668 (887)
.+..+++|+.|++++|.++.+ |..+..+++|+.|+|++|. +..+|+..+.++++|+.|++++|.+..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN----LSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc----CCcCCHHHcccCcccCEEeccCCCccC
Confidence 355666666666666666644 4556666666666666664 233333333355566666666555543
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=236.20 Aligned_cols=246 Identities=19% Similarity=0.236 Sum_probs=218.8
Q ss_pred CccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccC
Q 045202 462 NIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVG 541 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 541 (887)
....++..+..++.+|..+. ++++.|+|++|.+....+..|.++++|++|+|++|.+....+..|.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 56788999999999998765 7899999999998888888999999999999999998888888999999999999999
Q ss_pred ccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCC-CCCccc-cccCCCCCcEEEcCCCCCccc
Q 045202 542 TAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCC-IMELPE-SLGLLSSVRELHLNGNNFERI 618 (887)
Q Consensus 542 n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~-~~~~l~~L~~L~L~~n~l~~l 618 (887)
|.++.+|. .+..+++|+.|++++|.+...+ +..+..+++|+.|+|++|+ +..++. .+..+++|++|+|++|+++.+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99999887 6899999999999999987543 3458899999999999954 555664 688999999999999999999
Q ss_pred chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHH
Q 045202 619 PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGAL 698 (887)
Q Consensus 619 p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~ 698 (887)
| .+..+++|+.|+|++|. +..+++..+.++++|+.|++++|.++++.+..|..+..|+.|+|++|.++.+.+..|
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNH----LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp C-CCTTCSSCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred c-ccCCCcccCEEECCCCc----cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 9 58899999999999996 334444555688999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhhhhhc
Q 045202 699 QKIQLLATARLKEAREK 715 (887)
Q Consensus 699 ~~l~~L~~l~l~~n~~~ 715 (887)
..+++|+.++|++|...
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 99999999999998654
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.5e-23 Score=236.77 Aligned_cols=246 Identities=18% Similarity=0.255 Sum_probs=218.6
Q ss_pred CccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccC
Q 045202 462 NIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVG 541 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 541 (887)
....++.++..+..+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45788899999999998764 7999999999998888899999999999999999998888889999999999999999
Q ss_pred ccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccC-CCCCccc-cccCCCCCcEEEcCCCCCccc
Q 045202 542 TAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDC-CIMELPE-SLGLLSSVRELHLNGNNFERI 618 (887)
Q Consensus 542 n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~lp~-~~~~l~~L~~L~L~~n~l~~l 618 (887)
|.++.+|. .+..+++|+.|++++|.+...+ +..+..+++|+.|++++| .+..++. .+..+++|+.|+|++|+++.+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99998887 4889999999999999987443 345889999999999995 5555664 688999999999999999999
Q ss_pred chhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHH
Q 045202 619 PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGAL 698 (887)
Q Consensus 619 p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~ 698 (887)
| .+..+++|+.|+|++|. +..+++..+.++++|+.|++++|.++++.+..|..+..|+.|+|++|.++++.+..|
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNH----FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp C-CCTTCTTCCEEECTTSC----CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred c-cccccccccEEECcCCc----CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 8 58899999999999997 444445555688999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhhhhhhc
Q 045202 699 QKIQLLATARLKEAREK 715 (887)
Q Consensus 699 ~~l~~L~~l~l~~n~~~ 715 (887)
..+++|+.++|++|...
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 99999999999998554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=7.1e-24 Score=229.97 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=99.3
Q ss_pred CCccEEEccCCCCCCCCcchhcC-----CCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCC--Cchhh--cCC
Q 045202 461 GNIETMRLDGTAPEELPSSIECL-----SKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQR--LPEEL--GNL 531 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l-----~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~--~p~~l--~~l 531 (887)
++|++|+|++|.+..+|..++.+ ++|++|+|++|.+.+..|..++++++|++|++++|.+.+. +|..+ +.+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 34444444444555555556555 7777777777776666666777777777777777765543 23333 666
Q ss_pred CCCceeeccCccCccCCc----cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcE
Q 045202 532 QALDSLHAVGTAITEVPP----SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRE 607 (887)
Q Consensus 532 ~~L~~L~L~~n~i~~lp~----~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~ 607 (887)
++|++|++++|.++.++. .+..+++|+.|++++|.+........+..+++|+.|+|++|.++.+|..+. ++|++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 777777777777663332 223555666666666655433211223445555555555555555555444 55555
Q ss_pred EEcCCCCCcccchhhhcCCCccEeeccccc
Q 045202 608 LHLNGNNFERIPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 608 L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 637 (887)
|+|++|+++.+|. +..+++|++|+|++|+
T Consensus 279 L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 279 LDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred EECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 5555555555554 5555555555555554
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=5.1e-24 Score=231.13 Aligned_cols=244 Identities=19% Similarity=0.133 Sum_probs=180.8
Q ss_pred CCCccEEEeecCCCCCCCcccccCCccEEEccCCCCC--CCCcchh-------cCCCCcEEecccCCCCccCCccc--CC
Q 045202 438 LGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPE--ELPSSIE-------CLSKLLHLDLVDCKTLKSLPSGL--GK 506 (887)
Q Consensus 438 l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~~~~lp~~l--~~ 506 (887)
.++|+.|++++|.. .+|......|+.|+|++|.+. .+|..+. ++++|++|+|++|.+.+.+|..+ ..
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 33445555555443 344333333555666666554 3555554 68899999999998888888876 88
Q ss_pred CCCCcEEEeeCCCCCCCCchhhcCC-----CCCceeeccCccCccCC-ccccCCCCCCEEEccccCCCc-ccccccc--c
Q 045202 507 LKSLGILSIDGCSNLQRLPEELGNL-----QALDSLHAVGTAITEVP-PSIVRLKRVRGIYLGRNRGLS-LPITFSV--D 577 (887)
Q Consensus 507 L~~L~~L~L~~~~~~~~~p~~l~~l-----~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~-~~~~~~~--~ 577 (887)
+++|++|++++|.+.+. |..++.+ ++|++|++++|.+..++ ..+..+++|+.|++++|++.. ...+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999887776 7777776 88999999999998776 578889999999998887543 2233333 7
Q ss_pred CCCcccEEecccCCCCCcc----ccccCCCCCcEEEcCCCCCcccc--hhhhcCCCccEeeccccccccccCCCcccccc
Q 045202 578 GLQNLLDLSLNDCCIMELP----ESLGLLSSVRELHLNGNNFERIP--ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLV 651 (887)
Q Consensus 578 ~l~~L~~L~Ls~n~l~~lp----~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~ 651 (887)
.+++|++|+|++|.++.++ ..+..+++|++|+|++|+++..+ ..+..+++|++|+|++|. +..+|..+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~----l~~ip~~~~- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG----LKQVPKGLP- 273 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC----CSSCCSSCC-
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc----cChhhhhcc-
Confidence 8899999999999988543 23457789999999999988644 456678899999999986 334455443
Q ss_pred cCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcc
Q 045202 652 GCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 652 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i 693 (887)
++|+.|++++|.|++. +. +..+..|+.++|++|++++.
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7899999999999987 33 77888898999999988764
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.6e-22 Score=212.78 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=197.6
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
-+.++.+++.++.+|..+ .++|+.|++++|.+....+..+.++++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367899999999999765 579999999999988777788999999999999999988887899999999999999999
Q ss_pred c-CccC-CccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCcccc
Q 045202 543 A-ITEV-PPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFERIP 619 (887)
Q Consensus 543 ~-i~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp 619 (887)
. +..+ |..+..+++|++|++++|.+... .+..+.++++|++|++++|.++.+|. .++.+++|++|+|++|+++.+|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 8877 56899999999999999987753 35668899999999999999999775 5889999999999999999888
Q ss_pred h-hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchh
Q 045202 620 E-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFK 695 (887)
Q Consensus 620 ~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~ 695 (887)
. .+..+++|+.|+|++|.... +++..+.++++|+.|++++|.++++.+..+..+..++.++|++|.+..-.+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAH----VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccc----cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 6 58899999999999997433 333333478999999999999999888889999999999999999986544
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=1e-22 Score=221.40 Aligned_cols=236 Identities=19% Similarity=0.197 Sum_probs=175.8
Q ss_pred CCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeec
Q 045202 461 GNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHA 539 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 539 (887)
++|++|+|++|.+..+++ .+..+++|+.|+|++|.+.+..| +..+++|++|++++|.+.+ + ...++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l----~~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-L----LVGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-E----EECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-c----cCCCCcCEEEC
Confidence 467777777777777764 57888888888888887655444 7788888888888876543 2 23478888888
Q ss_pred cCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCc-cccc-cCCCCCcEEEcCCCCCcc
Q 045202 540 VGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMEL-PESL-GLLSSVRELHLNGNNFER 617 (887)
Q Consensus 540 ~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~~-~~l~~L~~L~L~~n~l~~ 617 (887)
++|.++.++.. .+++|+.|++++|.+.... +..+..+++|+.|++++|.++++ |..+ ..+++|++|+|++|.++.
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 88888876543 3677888888888776432 44577788888888888888874 3444 467888888888888887
Q ss_pred cchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCC-cchhH
Q 045202 618 IPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLG-GIFKG 696 (887)
Q Consensus 618 lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~-~i~~~ 696 (887)
+|.. ..+++|++|+|++|. +..+|+. +.++++|+.|++++|.++.+ +..+..+..++.++|++|.+. +..+.
T Consensus 184 ~~~~-~~l~~L~~L~Ls~N~----l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 184 VKGQ-VVFAKLKTLDLSSNK----LAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp EECC-CCCTTCCEEECCSSC----CCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred cccc-cccccCCEEECCCCc----CCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 7643 358888888888886 3334444 23678888888888888865 344667788889999999998 77888
Q ss_pred HHHHhHHHHHHhhhhhh
Q 045202 697 ALQKIQLLATARLKEAR 713 (887)
Q Consensus 697 ~~~~l~~L~~l~l~~n~ 713 (887)
.+..++.|+.+++..+.
T Consensus 257 ~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHhccccceEEECCCch
Confidence 99999999999998653
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.6e-22 Score=231.09 Aligned_cols=235 Identities=16% Similarity=0.134 Sum_probs=179.0
Q ss_pred cCceeecCcCcCCCCCCCCcccccCCCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccC
Q 045202 391 KLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDG 470 (887)
Q Consensus 391 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~ 470 (887)
+|+.|++++|.. .. ..+..+..+++|++|+|++|.+.+..| ...+++|++|+|++|. +..+|.. ++|++|++++
T Consensus 35 ~L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~--~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPL-SQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG--PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCC-CC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEEC--TTCCEEECCS
T ss_pred CccEEEeeCCcC-CC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCCC--CCcCEEECcC
Confidence 666666666542 22 223455667777777777776655444 2347778888887763 3333322 6788888888
Q ss_pred CCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhc-CCCCCceeeccCccCccCCc
Q 045202 471 TAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELG-NLQALDSLHAVGTAITEVPP 549 (887)
Q Consensus 471 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~L~~n~i~~lp~ 549 (887)
|.+..++.. .+++|+.|+|++|.+.+..|..++++++|++|++++|.+.+..|..+. .+++|++|+|++|.++.+|.
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 888877654 468899999999888887788888899999999999888887777775 78899999999999887754
Q ss_pred cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCc--ccchhhhcCCC
Q 045202 550 SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFE--RIPESIIQLSN 627 (887)
Q Consensus 550 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~ 627 (887)
...+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|..++.+++|+.|++++|.+. .+|.++..++.
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred -cccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 3458889999998888774 455588888999999999999888888888899999999999888 77788888888
Q ss_pred ccEeecccc
Q 045202 628 LKSLFIRYC 636 (887)
Q Consensus 628 L~~L~L~~c 636 (887)
|+.|+++.+
T Consensus 264 L~~l~~~~~ 272 (487)
T 3oja_A 264 VQTVAKQTV 272 (487)
T ss_dssp HHHHHHHHH
T ss_pred CcEEecccc
Confidence 888888644
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.3e-21 Score=208.25 Aligned_cols=212 Identities=21% Similarity=0.211 Sum_probs=121.4
Q ss_pred CCCCcccccCCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcC
Q 045202 452 LKRLPEISSGNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGN 530 (887)
Q Consensus 452 l~~lp~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~ 530 (887)
+..+|....++|++|++++|.++.++. .+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..
T Consensus 19 l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp CSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 344554444566666666677766665 4667777777777777665555556667777777777777666665666677
Q ss_pred CCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCCCCc--
Q 045202 531 LQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLSSVR-- 606 (887)
Q Consensus 531 l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~L~-- 606 (887)
+++|++|++++|.+..++. .+..+++|+.|++++|.+....+|..+..+++|+.|++++|.+++++ ..+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 7777777777777665554 45566666666666665554445555555555555555555555533 2333333333
Q ss_pred --EEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCC
Q 045202 607 --ELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIP 667 (887)
Q Consensus 607 --~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~ 667 (887)
.|++++|.++.+|.......+|+.|+|++|. +..+|+..+.++++|+.|++++|.++
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ----LKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSC----CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCc----eeecCHhHhcccccccEEEccCCccc
Confidence 5555555555555444444455555555553 22233333334444444444444443
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=3.1e-24 Score=254.70 Aligned_cols=364 Identities=13% Similarity=0.076 Sum_probs=244.2
Q ss_pred CCeeEEEecCCCCCCC-CCCC-C--CCCccEEEcCCCC-Cc--cchhhhcCCccCceeecCcCcCCCCCC---CCccccc
Q 045202 345 TEVRYLHWHRYPLKSL-PSNI-H--PEKLVLLKMPHSN-IE--QVFDSVQHYLKLNQIITAAFNFFSKTP---TPSLTQH 414 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~l-p~~~-~--~~~L~~L~L~~n~-i~--~l~~~~~~l~~L~~L~l~~~~~l~~~~---~~~~~~~ 414 (887)
++|++|+++++.+... +..+ . ..+|++|+|+++. +. .+......+++|++|++++|... ... .+.+...
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS-EKDGKWLHELAQH 190 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE-CCCSHHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc-CcchhHHHHHHhc
Confidence 6788888888765421 1111 1 2348888888775 22 12233457788888888887632 111 1224467
Q ss_pred CCCCcEEEecCCCCC----CCCCCcc-CCCCccEEEeecCCCCCCCccccc--CCccEEEccCCCC----CCCCcchhcC
Q 045202 415 LNKLAILNLSGRKNL----QSLPARI-HLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTAP----EELPSSIECL 483 (887)
Q Consensus 415 l~~L~~L~L~~~~~~----~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~i----~~lp~~i~~l 483 (887)
+++|++|++++|.+. ..++..+ ++++|++|+|++|. +..+|.... ++|++|++++... ...+..+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 888888888888765 2333333 37888888888864 333554443 7888888874322 2344557778
Q ss_pred CCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCC-chhhcCCCCCceeeccCccCc--cCCccccCCCCCCEE
Q 045202 484 SKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRL-PEELGNLQALDSLHAVGTAIT--EVPPSIVRLKRVRGI 560 (887)
Q Consensus 484 ~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L 560 (887)
++|+.|+++++ ....+|..+..+++|++|++++|.+.... +..+..+++|++|+++ +.+. .++.....+++|+.|
T Consensus 270 ~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence 88888888874 35667777788889999999988844332 2446788899999988 4443 344445678889999
Q ss_pred Ecc-----------ccCCCcccccccccCCCcccEEecccCCCCC-ccccccC-CCCCcEEEcC----CCCCccc-----
Q 045202 561 YLG-----------RNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGL-LSSVRELHLN----GNNFERI----- 618 (887)
Q Consensus 561 ~L~-----------~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~-l~~L~~L~L~----~n~l~~l----- 618 (887)
+++ +|.+....++.....+++|++|+++.|.+++ .+..++. +++|+.|+++ .|.++..
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 997 5665544445545678899999998888876 4444543 8899999996 5677754
Q ss_pred -chhhhcCCCccEeeccccccccccCC-CcccccccCccceEecccCCCCCCCCcc-hhhhhcccCcccCCCCCCCcc-h
Q 045202 619 -PESIIQLSNLKSLFIRYCERLQFLPK-LPCNLLVGCASLHGTGIIRRFIPNSSES-DFLDLYLSDNFKLDPNDLGGI-F 694 (887)
Q Consensus 619 -p~~l~~l~~L~~L~L~~c~~l~~lp~-lp~~l~~~~~~L~~L~l~~N~l~~~~~~-~~~~l~~l~~l~L~~N~l~~i-~ 694 (887)
+..+.++++|++|+|++|.. .+.. .+..+...|++|+.|++++|.+++.... .+..+..|+.|+|++|.++.. .
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~--~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQG--GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGG--GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCC--CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 33467789999999987653 1111 1112212689999999999998763322 335578899999999998765 3
Q ss_pred hHHHHHhHHHHHHhhhhhhh
Q 045202 695 KGALQKIQLLATARLKEARE 714 (887)
Q Consensus 695 ~~~~~~l~~L~~l~l~~n~~ 714 (887)
+.....+++|+.|++++|..
T Consensus 506 ~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBC
T ss_pred HHHHHhcCccCeeECcCCcC
Confidence 44456788888898888853
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=7.4e-22 Score=227.25 Aligned_cols=234 Identities=15% Similarity=0.062 Sum_probs=194.1
Q ss_pred cCCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCCCCcEEec
Q 045202 414 HLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDL 491 (887)
Q Consensus 414 ~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 491 (887)
.+++|+.|+|++|.+.+..|..+ .+++|++|+|++|......| +.. ++|++|+|++|.+..+|.. ++|+.|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 45589999999999888777777 49999999999986544444 333 8999999999999887753 89999999
Q ss_pred ccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCcc-CCcccc-CCCCCCEEEccccCCCc
Q 045202 492 VDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITE-VPPSIV-RLKRVRGIYLGRNRGLS 569 (887)
Q Consensus 492 ~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~-lp~~l~-~l~~L~~L~L~~n~~~~ 569 (887)
++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|+.|++++|.++. .|..+. .+++|+.|+|++|.+..
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99987766554 46899999999999998888899999999999999999996 455665 79999999999999875
Q ss_pred ccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccc-cccCCCccc
Q 045202 570 LPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERL-QFLPKLPCN 648 (887)
Q Consensus 570 ~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~lp~lp~~ 648 (887)
. +. ...+++|+.|+|++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|+.. ..+|.
T Consensus 184 ~--~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~---- 256 (487)
T 3oja_A 184 V--KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD---- 256 (487)
T ss_dssp E--EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH----
T ss_pred c--cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH----
Confidence 4 33 4468999999999999999988899999999999999999999999999999999999999754 23322
Q ss_pred ccccCccceEeccc
Q 045202 649 LLVGCASLHGTGII 662 (887)
Q Consensus 649 l~~~~~~L~~L~l~ 662 (887)
....++.|+.+.+.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 22356777777664
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=2.9e-20 Score=197.78 Aligned_cols=223 Identities=17% Similarity=0.159 Sum_probs=189.4
Q ss_pred EEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccC
Q 045202 465 TMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAI 544 (887)
Q Consensus 465 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i 544 (887)
..+-.+..+.++|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45556677888888664 6899999999988777777899999999999999988877777899999999999999999
Q ss_pred ccCC-ccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC--ccccccCCCCCcEEEcCCCCCcccc-h
Q 045202 545 TEVP-PSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME--LPESLGLLSSVRELHLNGNNFERIP-E 620 (887)
Q Consensus 545 ~~lp-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--lp~~~~~l~~L~~L~L~~n~l~~lp-~ 620 (887)
+.++ ..+..+++|++|++++|.+.... +..+..+++|++|++++|.++. +|..++.+++|++|++++|+++.+| .
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 9776 57899999999999999877543 3348899999999999999987 7899999999999999999999776 4
Q ss_pred hhhcCCCcc----EeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchh
Q 045202 621 SIIQLSNLK----SLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFK 695 (887)
Q Consensus 621 ~l~~l~~L~----~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~ 695 (887)
.+..+++|+ .|++++|. +..+++..+ ...+|+.|++++|.++++++..+..+..++.++|++|.+.+-.+
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~----l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNP----MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSC----CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCc----ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666666666 89999997 334444443 34589999999999999988888999999999999999987644
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1e-19 Score=192.78 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=95.7
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
.+.++++++.++.+|..+. ++|+.|+|++|.+....+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 3444444455555554332 34555555555544433344555555555555555544333334455555555555555
Q ss_pred cCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcccc-ccCCCCCcEEEcCCCCCcccch
Q 045202 543 AITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPES-LGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 543 ~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
.+..+|. .+..+++|+.|++++|.+...+ +..+..+++|++|+|++|.++++|.. +..+++|+.|+|++|+++.+|.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 5554443 2344455555555444443221 22244555555555555555554432 4555555555555555555443
Q ss_pred -hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCC
Q 045202 621 -SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFI 666 (887)
Q Consensus 621 -~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l 666 (887)
.+..+++|++|+|++|+ +..+|+..+..+++|+.|++++|.+
T Consensus 175 ~~~~~l~~L~~L~L~~N~----l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQ----LKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSC----CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHhccCCCcCEEECCCCc----CCcCCHHHhccccCCCEEEecCCCe
Confidence 24455555555555553 2223333323444555555544443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.7e-19 Score=191.19 Aligned_cols=197 Identities=25% Similarity=0.302 Sum_probs=152.9
Q ss_pred CccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCC
Q 045202 440 LLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGC 518 (887)
Q Consensus 440 ~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~ 518 (887)
.++.++++++ .+..+|.....++++|+|++|.+..+|. .+.++++|++|+|++|.+....+..|.++++|++|++++|
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCC-CCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4556666653 3455665555677777777788887776 4888888888888888766555555678888888888888
Q ss_pred CCCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc
Q 045202 519 SNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE 597 (887)
Q Consensus 519 ~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~ 597 (887)
.+....+..+..+++|++|++++|.++.++. .+..+++|++|++++|.+...+ +..+..+++|+.|+|++|.++.+|.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEecCCcCcEeCh
Confidence 8776666777888888888888888887765 5678888999999888876433 3347788999999999999988765
Q ss_pred -cccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeecccccc
Q 045202 598 -SLGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIRYCER 638 (887)
Q Consensus 598 -~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~ 638 (887)
.+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 57788999999999999998875 477889999999999863
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=2.4e-19 Score=191.77 Aligned_cols=175 Identities=22% Similarity=0.221 Sum_probs=81.7
Q ss_pred CCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccc
Q 045202 485 KLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGR 564 (887)
Q Consensus 485 ~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 564 (887)
+|+.|+|++|.+.+..|..+.++++|++|++++|.+.+. +.. +.+++|++|++++|.++.+|..+..+++|+.|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 444444444444333334444444444444444433221 111 344445555555555555554444555555555555
Q ss_pred cCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCcccchh-hhcCCCccEeecccccccccc
Q 045202 565 NRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFERIPES-IIQLSNLKSLFIRYCERLQFL 642 (887)
Q Consensus 565 n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~l 642 (887)
|++...+ +..+.++++|+.|+|++|.++.+|. .+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+ +
T Consensus 110 N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~----l 184 (290)
T 1p9a_G 110 NRLTSLP-LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS----L 184 (290)
T ss_dssp SCCCCCC-SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC----C
T ss_pred CcCcccC-HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc----C
Confidence 5444221 2334455555555555555555443 234555555555555555555532 3445555555555554 2
Q ss_pred CCCcccccccCccceEecccCCCCC
Q 045202 643 PKLPCNLLVGCASLHGTGIIRRFIP 667 (887)
Q Consensus 643 p~lp~~l~~~~~~L~~L~l~~N~l~ 667 (887)
..+|..++ .+.+|+.+++++|.+.
T Consensus 185 ~~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 185 YTIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred CccChhhc-ccccCCeEEeCCCCcc
Confidence 23333322 3345555555555554
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=2.4e-19 Score=191.76 Aligned_cols=201 Identities=20% Similarity=0.189 Sum_probs=106.4
Q ss_pred hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCE
Q 045202 480 IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRG 559 (887)
Q Consensus 480 i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 559 (887)
+.++++|+.++++++. +..+|..+. ++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++.. ..+++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 3445555555555543 233444332 4555666666555555555555566666666666655555443 45555666
Q ss_pred EEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCCCCcEEEcCCCCCcccchh-hhcCCCccEeeccccc
Q 045202 560 IYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLSSVRELHLNGNNFERIPES-IIQLSNLKSLFIRYCE 637 (887)
Q Consensus 560 L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~c~ 637 (887)
|++++|.+. .+|..+..+++|+.|++++|.++.+| ..+..+++|++|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 82 L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 666555554 33444555555666666666555544 3455555666666666655555432 3455566666665554
Q ss_pred cccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCC
Q 045202 638 RLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLG 691 (887)
Q Consensus 638 ~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~ 691 (887)
+..+|+..+.++++|+.|++++|.++.++... .....++.++|++|.+.
T Consensus 160 ----l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~-~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 ----LTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ----CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCBC
T ss_pred ----CCccCHHHhcCcCCCCEEECCCCcCCccChhh-cccccCCeEEeCCCCcc
Confidence 33344444445555666666666655443322 23345555556665554
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=2.9e-22 Score=237.63 Aligned_cols=343 Identities=14% Similarity=0.080 Sum_probs=212.7
Q ss_pred CeeEEEecCCCC-C--CCCCCC-CCCCccEEEcCCCCCccc-----hhhhcCCccCceeecCcCcCCCCCCC---Ccccc
Q 045202 346 EVRYLHWHRYPL-K--SLPSNI-HPEKLVLLKMPHSNIEQV-----FDSVQHYLKLNQIITAAFNFFSKTPT---PSLTQ 413 (887)
Q Consensus 346 ~Lr~L~l~~~~l-~--~lp~~~-~~~~L~~L~L~~n~i~~l-----~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~ 413 (887)
+|++|+++++.- . .++... .+++|++|+|++|.+... ......+++|+.|++++|..- .... +..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA-KISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS-SCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC-ccCHHHHHHHHh
Confidence 377888877651 1 111111 457888888888876532 234556788888888876632 1111 33446
Q ss_pred cCCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCCCCC---Cccccc--CCccEEEccCCCCCCCCcchhcCCCCc
Q 045202 414 HLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSKLKR---LPEISS--GNIETMRLDGTAPEELPSSIECLSKLL 487 (887)
Q Consensus 414 ~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~l~~---lp~~~~--~~L~~L~L~~~~i~~lp~~i~~l~~L~ 487 (887)
.+++|+.|++++|.+.+ +|..+ ++++|+.|+++++..... .+.... ++|+.|+++++....+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 77888888888876544 45444 378888888876433311 111111 678888888777777777778888888
Q ss_pred EEecccCCCCccC-CcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccC-----------ccCc--cCCccccC
Q 045202 488 HLDLVDCKTLKSL-PSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVG-----------TAIT--EVPPSIVR 553 (887)
Q Consensus 488 ~L~L~~~~~~~~l-p~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~-----------n~i~--~lp~~l~~ 553 (887)
.|+|++|.+.... +..+.++++|++|+++++-....++.....+++|++|++++ +.++ .++.....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 8888887743322 23356788888888884433334445556678888888883 4554 23333456
Q ss_pred CCCCCEEEccccCCCcccccccccCCCcccEEecc----cCCCCCcc------ccccCCCCCcEEEcCCCC--Cc-ccch
Q 045202 554 LKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLN----DCCIMELP------ESLGLLSSVRELHLNGNN--FE-RIPE 620 (887)
Q Consensus 554 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls----~n~l~~lp------~~~~~l~~L~~L~L~~n~--l~-~lp~ 620 (887)
+++|+.|++++|.+....+......+++|+.|+++ .|.+++.| ..+..+++|+.|+++.|. ++ ..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 78888888877776543332222347788888886 45666533 335567888888886543 44 3333
Q ss_pred hh-hcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcch-hhhhcccCcccCCCCCCCcc
Q 045202 621 SI-IQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESD-FLDLYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 621 ~l-~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~l~~l~L~~N~l~~i 693 (887)
.+ ..+++|++|+|++|..... .+ +.+..+|++|+.|++++|.+++..... ...++.|+.|+|++|+++..
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~--~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDE--GL-MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHH--HH-HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhCccceEeeccCCCCCHH--HH-HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 33 3478888888888762210 01 111137788888888888875432222 24567788888888887654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.4e-19 Score=193.67 Aligned_cols=191 Identities=24% Similarity=0.372 Sum_probs=106.5
Q ss_pred CccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccC
Q 045202 462 NIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVG 541 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 541 (887)
+|++|+++++.+..+| .+..+++|+.|+|++|.+.. ++. +..+++|++|++++|.+.+ +| .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTT
T ss_pred CcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCC
Confidence 4444444444455554 35555666666666554333 232 5556666666666655433 22 455566666666666
Q ss_pred ccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchh
Q 045202 542 TAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPES 621 (887)
Q Consensus 542 n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~ 621 (887)
|.++.++. +..+++|+.|++++|.+...+ . +..+++|+.|++++|.+++++. +..+++|+.|++++|+++.+|.
T Consensus 117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 117 TQITDVTP-LAGLSNLQVLYLDLNQITNIS--P-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCchh-hcCCCCCCEEECCCCccCcCc--c-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 66665543 556666666666666554322 2 5556666666666666666554 5666666666666666666553
Q ss_pred hhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCC
Q 045202 622 IIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNS 669 (887)
Q Consensus 622 l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~ 669 (887)
+..+++|++|+|++|+. ..+++ ...+++|+.|++++|.+++.
T Consensus 191 l~~l~~L~~L~L~~N~l----~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQI----SDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GGGCTTCCEEECTTSCC----CBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hcCCCCCCEEEccCCcc----Ccccc--ccCCCCCCEEEccCCeeecC
Confidence 56666666666666642 22221 13566666666666666553
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=199.90 Aligned_cols=201 Identities=18% Similarity=0.144 Sum_probs=128.2
Q ss_pred CCCCcEEecccCCCCccCCccc--CCCCCCcEEEeeCCCCCCCCc----hhhcCCCCCceeeccCccCccCC-ccccCCC
Q 045202 483 LSKLLHLDLVDCKTLKSLPSGL--GKLKSLGILSIDGCSNLQRLP----EELGNLQALDSLHAVGTAITEVP-PSIVRLK 555 (887)
Q Consensus 483 l~~L~~L~L~~~~~~~~lp~~l--~~L~~L~~L~L~~~~~~~~~p----~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~ 555 (887)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..| ..+..+++|++|++++|.+..++ ..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777776666666665 667777777777776665444 23445667777777777776554 3566777
Q ss_pred CCCEEEccccCCCc---ccccccccCCCcccEEecccCCCCCccc----cccCCCCCcEEEcCCCCCccc-chhhhcC--
Q 045202 556 RVRGIYLGRNRGLS---LPITFSVDGLQNLLDLSLNDCCIMELPE----SLGLLSSVRELHLNGNNFERI-PESIIQL-- 625 (887)
Q Consensus 556 ~L~~L~L~~n~~~~---~~~~~~~~~l~~L~~L~Ls~n~l~~lp~----~~~~l~~L~~L~L~~n~l~~l-p~~l~~l-- 625 (887)
+|++|++++|++.. ...+..+..+++|++|+|++|.++.++. .++.+++|++|+|++|+++.+ |..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777776543 1222333567777777777777765544 245667777777777777754 6555555
Q ss_pred -CCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCc
Q 045202 626 -SNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGG 692 (887)
Q Consensus 626 -~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~ 692 (887)
++|++|+|++|.. ..+|..+ +++|+.|++++|.|++++. +..++.|+.++|++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l----~~lp~~~---~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGL----EQVPKGL---PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCC----CSCCSCC---CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCC----Cchhhhh---cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 5777777777752 2334333 2677777777777776532 4556777777777777653
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.2e-19 Score=188.64 Aligned_cols=183 Identities=17% Similarity=0.155 Sum_probs=109.9
Q ss_pred CCCCcccccCCccEEEccCCCCCCCCc-chhcCCCCcEEecccCC-CCccCCcccCCCCCCcEEEeeC-CCCCCCCchhh
Q 045202 452 LKRLPEISSGNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCK-TLKSLPSGLGKLKSLGILSIDG-CSNLQRLPEEL 528 (887)
Q Consensus 452 l~~lp~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~-~~~~lp~~l~~L~~L~~L~L~~-~~~~~~~p~~l 528 (887)
++.+|. ...+|++|++++|.++.+|+ .+.++++|+.|++++|. +....+..|.++++|++|++++ |.+....+..+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 555665 44567777777777777766 46777777777777775 3333344667777777777776 55554444566
Q ss_pred cCCCCCceeeccCccCccCCccccCCCCCC---EEEcccc-CCCcccccccccCCCccc-EEecccCCCCCccccccCCC
Q 045202 529 GNLQALDSLHAVGTAITEVPPSIVRLKRVR---GIYLGRN-RGLSLPITFSVDGLQNLL-DLSLNDCCIMELPESLGLLS 603 (887)
Q Consensus 529 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~---~L~L~~n-~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~lp~~~~~l~ 603 (887)
..+++|++|++++|.++.+|. +..+++|+ .|++++| .+...+ +..+.++++|+ .|++++|.++.+|......+
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCCcccCHhhcCCC
Confidence 777777777777777776665 55555555 6666555 444222 22355555666 66666666555554433335
Q ss_pred CCcEEEcCCCC-Ccccc-hhhhcC-CCccEeeccccc
Q 045202 604 SVRELHLNGNN-FERIP-ESIIQL-SNLKSLFIRYCE 637 (887)
Q Consensus 604 ~L~~L~L~~n~-l~~lp-~~l~~l-~~L~~L~L~~c~ 637 (887)
+|+.|++++|+ ++.+| ..+..+ ++|+.|+|++|+
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 56666666663 55554 234555 556666665554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.4e-20 Score=206.37 Aligned_cols=229 Identities=14% Similarity=0.166 Sum_probs=158.2
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCcc-CCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeec
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKS-LPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHA 539 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 539 (887)
.+++.|++++|.+...+..+..+++|+.|++++|.+... +|..+..+++|++|++++|.+....|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455556666666666655666777888888888775544 6667777888888888887766667777777888888888
Q ss_pred cCc-cCc--cCCccccCCCCCCEEEcccc-CCCcccccccccCCC-cccEEecccC--CCC--CccccccCCCCCcEEEc
Q 045202 540 VGT-AIT--EVPPSIVRLKRVRGIYLGRN-RGLSLPITFSVDGLQ-NLLDLSLNDC--CIM--ELPESLGLLSSVRELHL 610 (887)
Q Consensus 540 ~~n-~i~--~lp~~l~~l~~L~~L~L~~n-~~~~~~~~~~~~~l~-~L~~L~Ls~n--~l~--~lp~~~~~l~~L~~L~L 610 (887)
++| .++ .++..+..+++|+.|++++| .+....++..+..++ +|++|++++| .++ .+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 887 566 35666777888888888777 665544566677788 8888888888 454 26777777888888888
Q ss_pred CCCC-Cc-ccchhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhh-cccCcccCCC
Q 045202 611 NGNN-FE-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDL-YLSDNFKLDP 687 (887)
Q Consensus 611 ~~n~-l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~l~~l~L~~ 687 (887)
++|. ++ ..+..+..+++|++|+|++|... .+.... ...+|++|+.|++++| + ....+..+ ..+..|++++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~-~l~~~~~L~~L~l~~~-i---~~~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI--IPETLL-ELGEIPTLKTLQVFGI-V---PDGTLQLLKEALPHLQINC 302 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTC--CGGGGG-GGGGCTTCCEEECTTS-S---CTTCHHHHHHHSTTSEESC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC--CHHHHH-HHhcCCCCCEEeccCc-c---CHHHHHHHHhhCcceEEec
Confidence 8887 55 56667788888888888888521 111111 1236788888888877 3 33334443 3366677777
Q ss_pred CCCCcchhH
Q 045202 688 NDLGGIFKG 696 (887)
Q Consensus 688 N~l~~i~~~ 696 (887)
|.++++.|.
T Consensus 303 n~l~~~~~~ 311 (336)
T 2ast_B 303 SHFTTIARP 311 (336)
T ss_dssp CCSCCTTCS
T ss_pred ccCccccCC
Confidence 777776653
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=5.6e-19 Score=190.82 Aligned_cols=166 Identities=21% Similarity=0.309 Sum_probs=135.3
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
++|++|++++|.+..++. +..+++|+.|+|++|.+.+ +| .+..+++|++|++++|.+.+ +|. +..+++|++|+++
T Consensus 63 ~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 137 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLD 137 (308)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECC
Confidence 455555555566666776 7888888888888887443 44 57888888888888887655 343 8888899999999
Q ss_pred CccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch
Q 045202 541 GTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 541 ~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
+|.++.++. +..+++|+.|++++|.+... +. +..+++|+.|++++|.+++++. +..+++|+.|+|++|+++.++
T Consensus 138 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~- 211 (308)
T 1h6u_A 138 LNQITNISP-LAGLTNLQYLSIGNAQVSDL--TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS- 211 (308)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-
T ss_pred CCccCcCcc-ccCCCCccEEEccCCcCCCC--hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-
Confidence 998888776 88889999999988887753 33 7889999999999999998876 788999999999999999888
Q ss_pred hhhcCCCccEeeccccc
Q 045202 621 SIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 621 ~l~~l~~L~~L~L~~c~ 637 (887)
.+..+++|+.|+|++|+
T Consensus 212 ~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 212 PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGTTCTTCCEEEEEEEE
T ss_pred cccCCCCCCEEEccCCe
Confidence 48899999999999997
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=9.7e-22 Score=233.24 Aligned_cols=360 Identities=12% Similarity=0.050 Sum_probs=206.1
Q ss_pred CCeeEEEecCCCCCCC-CCCC--CCCCccEEEcCCC-CCcc--chhhhcCCccCceeecCcCcCCCCCCC---CcccccC
Q 045202 345 TEVRYLHWHRYPLKSL-PSNI--HPEKLVLLKMPHS-NIEQ--VFDSVQHYLKLNQIITAAFNFFSKTPT---PSLTQHL 415 (887)
Q Consensus 345 ~~Lr~L~l~~~~l~~l-p~~~--~~~~L~~L~L~~n-~i~~--l~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~l 415 (887)
++|+.|+++++.+... +..+ .+++|+.|+|++| .+.. ++.....+++|++|++++|. +..... +.+...+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcC
Confidence 5677777777654421 1111 3567777777766 4443 33444467777777777765 222111 2233456
Q ss_pred CCCcEEEecCCC--CCC-CCCCcc-CCCCccEEEeecCCCCCCCccccc--CCccEEEccCCC-------CCCCCcchhc
Q 045202 416 NKLAILNLSGRK--NLQ-SLPARI-HLGLLKELNLSGCSKLKRLPEISS--GNIETMRLDGTA-------PEELPSSIEC 482 (887)
Q Consensus 416 ~~L~~L~L~~~~--~~~-~lp~~~-~l~~L~~L~L~~~~~l~~lp~~~~--~~L~~L~L~~~~-------i~~lp~~i~~ 482 (887)
++|+.|++++|. +.. .++... ++++|++|+|++|..+..+|.... ++|++|+++.+. +..++..+.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 677777777765 110 111111 257777777777655444444433 667777754432 2344556667
Q ss_pred CCCCcEE-ecccCCCCccCCcccCCCCCCcEEEeeCCCCCCC-CchhhcCCCCCceeeccCccCc--cCCccccCCCCCC
Q 045202 483 LSKLLHL-DLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQR-LPEELGNLQALDSLHAVGTAIT--EVPPSIVRLKRVR 558 (887)
Q Consensus 483 l~~L~~L-~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~ 558 (887)
+++|+.| .+.+.. ...+|..+..+++|++|++++|.+... ++..+..+++|++|++++| +. .++.....+++|+
T Consensus 264 ~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 264 CKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp CTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 7777777 343322 234555455677888888888774322 2233567788888888877 33 2222334577888
Q ss_pred EEEc---------cccCCCcccccccccCCCcccEEecccCCCCC-ccccc-cCCCCCcEEEcC--C----CCCcccc--
Q 045202 559 GIYL---------GRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESL-GLLSSVRELHLN--G----NNFERIP-- 619 (887)
Q Consensus 559 ~L~L---------~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~-~~l~~L~~L~L~--~----n~l~~lp-- 619 (887)
.|++ +++.+....+.....++++|+.|.++.|.+++ .+..+ ..+++|+.|+++ + |+++..|
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 8877 23343333333323357788888777777765 22333 357788888887 3 4565433
Q ss_pred ----hhhhcCCCccEeeccccccccccCCC-cccccccCccceEecccCCCCCCCCcchh-hhhcccCcccCCCCCCCcc
Q 045202 620 ----ESIIQLSNLKSLFIRYCERLQFLPKL-PCNLLVGCASLHGTGIIRRFIPNSSESDF-LDLYLSDNFKLDPNDLGGI 693 (887)
Q Consensus 620 ----~~l~~l~~L~~L~L~~c~~l~~lp~l-p~~l~~~~~~L~~L~l~~N~l~~~~~~~~-~~l~~l~~l~L~~N~l~~i 693 (887)
..+..+++|+.|+|+++ +... +..+...+++|+.|++++|.+++.....+ ..++.|+.|+|++|.+++.
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~~-----l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSGL-----LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCSS-----CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred hHHHHHHhhCCCccEEeecCc-----ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 22566788888888652 1111 11111147788888888887765444433 4467788888888887554
Q ss_pred hhH-HHHHhHHHHHHhhhhh
Q 045202 694 FKG-ALQKIQLLATARLKEA 712 (887)
Q Consensus 694 ~~~-~~~~l~~L~~l~l~~n 712 (887)
... ....+++|+.|++++|
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESS
T ss_pred HHHHHHHhCCCCCEEeeeCC
Confidence 333 2334667777777665
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=4.8e-19 Score=187.83 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=113.9
Q ss_pred CccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccC
Q 045202 462 NIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVG 541 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 541 (887)
+|+.|+++++.+..++ .+..+++|+.|++++|.+.+ ++ .+.++++|++|++++|.+.+..+..++.+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 4444444444444443 25556666666666655433 22 455666666666666655555555556666666666666
Q ss_pred ccCccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCcccc
Q 045202 542 TAITEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFERIP 619 (887)
Q Consensus 542 n~i~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp 619 (887)
|.++.+|.. +..+++|++|++++|.+...+ +..+..+++|+.|++++|.++++|. .++.+++|+.|++++|+++.+|
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 666655543 455666666666666554222 2334566666666666666666543 3466667777777777766555
Q ss_pred h-hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhh
Q 045202 620 E-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFL 675 (887)
Q Consensus 620 ~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~ 675 (887)
. .+..+++|+.|+|++|+... .|++|+.+++..|.++|..|..+.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~-----------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDC-----------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC-----------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred HHHHhCCcCCCEEEccCCCccc-----------cCcHHHHHHHHHHhCCCcccCccc
Confidence 3 35666777777777664221 345566666666666655554443
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.2e-19 Score=186.54 Aligned_cols=207 Identities=11% Similarity=0.110 Sum_probs=163.7
Q ss_pred CCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC-CCCCCchhhcCCCCCceeeccC-ccCccC
Q 045202 470 GTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS-NLQRLPEELGNLQALDSLHAVG-TAITEV 547 (887)
Q Consensus 470 ~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~-~~~~~p~~l~~l~~L~~L~L~~-n~i~~l 547 (887)
...++++|. +. .+|+.|++++|.+.+..+..|.++++|++|++++|. +....+..+..+++|++|++++ |.++.+
T Consensus 20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334778887 43 489999999998777666689999999999999997 5554455789999999999998 999988
Q ss_pred Cc-cccCCCCCCEEEccccCCCcccccccccCCCccc---EEecccC-CCCCccc-cccCCCCCc-EEEcCCCCCcccch
Q 045202 548 PP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLL---DLSLNDC-CIMELPE-SLGLLSSVR-ELHLNGNNFERIPE 620 (887)
Q Consensus 548 p~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~---~L~Ls~n-~l~~lp~-~~~~l~~L~-~L~L~~n~l~~lp~ 620 (887)
|. .+..+++|+.|++++|.+.. +|. +..+++|+ .|++++| .++.+|. .+..+++|+ .|++++|+++.+|.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 75 68899999999999998775 454 77788887 9999999 8888775 588899999 99999999998887
Q ss_pred hhhcCCCccEeeccccccccccCCCcccccccC-ccceEecccCCCCCCCCcchhhhhcccCcccCCCC
Q 045202 621 SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGC-ASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPN 688 (887)
Q Consensus 621 ~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N 688 (887)
.....++|+.|+|++|+.++. +|+..+.++ ++|+.|++++|.++.+++.. +..++.|+++++
T Consensus 174 ~~~~~~~L~~L~L~~n~~l~~---i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~---~~~L~~L~l~~~ 236 (239)
T 2xwt_C 174 YAFNGTKLDAVYLNKNKYLTV---IDKDAFGGVYSGPSLLDVSQTSVTALPSKG---LEHLKELIARNT 236 (239)
T ss_dssp TTTTTCEEEEEECTTCTTCCE---ECTTTTTTCSBCCSEEECTTCCCCCCCCTT---CTTCSEEECTTC
T ss_pred hhcCCCCCCEEEcCCCCCccc---CCHHHhhccccCCcEEECCCCccccCChhH---hccCceeeccCc
Confidence 655558999999999854443 344555577 89999999999998877663 345555566543
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=6.7e-19 Score=186.70 Aligned_cols=179 Identities=18% Similarity=0.205 Sum_probs=131.3
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..++.+++|++|+++
T Consensus 63 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 44444444445555543 56777788888888877666666667778888888888877776666667788888888888
Q ss_pred CccCccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCccc
Q 045202 541 GTAITEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFERI 618 (887)
Q Consensus 541 ~n~i~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~l 618 (887)
+|.++.+|.. +..+++|+.|++++|.+...+ +..+..+++|+.|++++|.++++|. .+..+++|+.|++++|.+.
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 218 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 218 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--
Confidence 8888877653 577888888888888766432 3446788889999999999888654 4788999999999999765
Q ss_pred chhhhcCCCccEeeccccccccccCCCcc
Q 045202 619 PESIIQLSNLKSLFIRYCERLQFLPKLPC 647 (887)
Q Consensus 619 p~~l~~l~~L~~L~L~~c~~l~~lp~lp~ 647 (887)
+.+++|+.|++..|...+.+|....
T Consensus 219 ----~~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 219 ----CTCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp ----CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ----ccCcHHHHHHHHHHhCCCcccCccc
Confidence 3456788899998887777775433
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=195.42 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=68.2
Q ss_pred CCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCcc---CCc--cccCCCCCCEEEccccCCCccc-ccc-cccC
Q 045202 506 KLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITE---VPP--SIVRLKRVRGIYLGRNRGLSLP-ITF-SVDG 578 (887)
Q Consensus 506 ~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~---lp~--~l~~l~~L~~L~L~~n~~~~~~-~~~-~~~~ 578 (887)
.+++|++|++++|.+.+..|..++.+++|++|++++|.+.. ++. .+..+++|++|++++|.+...+ .+. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 34444444444444433333444444444444444444321 111 1234444444444444433111 011 1234
Q ss_pred CCcccEEecccCCCCCc-cccccCC---CCCcEEEcCCCCCcccchhhhcCCCccEeeccccccccccCCCcccccccCc
Q 045202 579 LQNLLDLSLNDCCIMEL-PESLGLL---SSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCA 654 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~l-p~~~~~l---~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~ 654 (887)
+++|++|+|++|.++++ |..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|++|+. ..+|. ...++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l-~~~~~-----~~~l~ 294 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL-NRAPQ-----PDELP 294 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC-CSCCC-----TTSCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC-CCCch-----hhhCC
Confidence 45555555555555543 4444433 455555555555555554442 4555555555542 12221 12445
Q ss_pred cceEecccCCCCC
Q 045202 655 SLHGTGIIRRFIP 667 (887)
Q Consensus 655 ~L~~L~l~~N~l~ 667 (887)
+|+.|++++|.++
T Consensus 295 ~L~~L~L~~N~l~ 307 (310)
T 4glp_A 295 EVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCEECSSTTTS
T ss_pred CccEEECcCCCCC
Confidence 5556666655554
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=4.4e-20 Score=202.36 Aligned_cols=250 Identities=19% Similarity=0.164 Sum_probs=178.9
Q ss_pred cCceeecCcCcCCCCCCCCcccccC--CCCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEc
Q 045202 391 KLNQIITAAFNFFSKTPTPSLTQHL--NKLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRL 468 (887)
Q Consensus 391 ~L~~L~l~~~~~l~~~~~~~~~~~l--~~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L 468 (887)
.++.++++++... +..+..+ ++++.|++++|.+.+..+..+.+++|++|+|++
T Consensus 48 ~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~-------------------- 102 (336)
T 2ast_B 48 LWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN-------------------- 102 (336)
T ss_dssp TSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTT--------------------
T ss_pred hheeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccC--------------------
Confidence 3566666655421 2333444 566666666666555555544455555555555
Q ss_pred cCCCCCC--CCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC-CCC-CCchhhcCCCCCceeeccCc-c
Q 045202 469 DGTAPEE--LPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS-NLQ-RLPEELGNLQALDSLHAVGT-A 543 (887)
Q Consensus 469 ~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~-~~~-~~p~~l~~l~~L~~L~L~~n-~ 543 (887)
|.+.. +|..+..+++|+.|+|++|.+....|..+..+++|++|++++|. +.+ .++..+..+++|++|++++| .
T Consensus 103 --~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 103 --SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp --CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred --CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 44442 66668888999999999988777788888889999999999984 433 36777888999999999999 8
Q ss_pred Ccc--CCccccCCC-CCCEEEcccc--CCCcccccccccCCCcccEEecccCC-CCC-ccccccCCCCCcEEEcCCCC-C
Q 045202 544 ITE--VPPSIVRLK-RVRGIYLGRN--RGLSLPITFSVDGLQNLLDLSLNDCC-IME-LPESLGLLSSVRELHLNGNN-F 615 (887)
Q Consensus 544 i~~--lp~~l~~l~-~L~~L~L~~n--~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-lp~~~~~l~~L~~L~L~~n~-l 615 (887)
++. ++..+..++ +|++|++++| .+....++..+..+++|+.|++++|. +++ .+..+..+++|++|++++|. +
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 874 677788899 9999999888 44445667777889999999999998 554 67788889999999999995 3
Q ss_pred c-ccchhhhcCCCccEeeccccccccccCCCccccccc-CccceEecccCCCCCCCCcchhh
Q 045202 616 E-RIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVG-CASLHGTGIIRRFIPNSSESDFL 675 (887)
Q Consensus 616 ~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~-~~~L~~L~l~~N~l~~~~~~~~~ 675 (887)
. .....+..+++|+.|+|++| ++. ..... ..+|..|+++.|.+++..+..+.
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-----i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-----VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-----SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-----cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 3 11235788999999999998 332 11111 13355566889999998777654
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=7.3e-22 Score=234.31 Aligned_cols=364 Identities=16% Similarity=0.151 Sum_probs=241.1
Q ss_pred CCccEEEeeccccccCccceeccCCCC--CCCeeEEEecCC-CCCC--CCCCC-CCCCccEEEcCCCCCccc-----hhh
Q 045202 317 PNLRILKFYRSMNEENKCKVSYFQVPG--FTEVRYLHWHRY-PLKS--LPSNI-HPEKLVLLKMPHSNIEQV-----FDS 385 (887)
Q Consensus 317 ~~Lr~L~l~~~~~~~~~~~~~~p~~~~--~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~n~i~~l-----~~~ 385 (887)
++|+.|++.++.. ....+..+. .++|+.|+++++ .+.. ++... .+++|++|+|++|.++.. ...
T Consensus 105 ~~L~~L~L~~~~~-----~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 105 TWLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TTCCEEEEESCBC-----CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCCeEEeeCcEE-----cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 5899999986532 111122221 378999999988 4432 33333 578999999999987643 233
Q ss_pred hcCCccCceeecCcCcCCCCCCC---CcccccCCCCcEEEecCCCCCCCCCCcc-CCCCccEEEeecCCC------CCCC
Q 045202 386 VQHYLKLNQIITAAFNFFSKTPT---PSLTQHLNKLAILNLSGRKNLQSLPARI-HLGLLKELNLSGCSK------LKRL 455 (887)
Q Consensus 386 ~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~l~~L~~L~L~~~~~~~~lp~~~-~l~~L~~L~L~~~~~------l~~l 455 (887)
...+++|+.|++++|. ..+.. ..+...+++|++|++++|...+.+|..+ .+++|+.|+++.|.. +..+
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 3467899999999886 22221 2233567999999999986555566655 489999999887643 1111
Q ss_pred cccc-c-CCccEE-EccCCCCCCCCcchhcCCCCcEEecccCCCCcc-CCcccCCCCCCcEEEeeCCCCCCCCchhhcCC
Q 045202 456 PEIS-S-GNIETM-RLDGTAPEELPSSIECLSKLLHLDLVDCKTLKS-LPSGLGKLKSLGILSIDGCSNLQRLPEELGNL 531 (887)
Q Consensus 456 p~~~-~-~~L~~L-~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l 531 (887)
+... . ++|+.| .+.+.....+|..+..+++|+.|+|++|.+... ++..+.++++|++|++++|-....++.....+
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTC 337 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhC
Confidence 1111 1 678888 455554456676677889999999999884432 23335688999999999882222233344568
Q ss_pred CCCceeeccC---------ccCcc--CCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecc--c----CCCCC
Q 045202 532 QALDSLHAVG---------TAITE--VPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLN--D----CCIME 594 (887)
Q Consensus 532 ~~L~~L~L~~---------n~i~~--lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls--~----n~l~~ 594 (887)
++|++|++.+ +.++. +......+++|+.|.+++|.+...........+++|+.|+++ + +.+++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 8999999843 34441 112223588999998888887654444433468899999999 3 55664
Q ss_pred cc------ccccCCCCCcEEEcCCCCCc-ccchhhhc-CCCccEeeccccccccccCCCcccccccCccceEecccCCCC
Q 045202 595 LP------ESLGLLSSVRELHLNGNNFE-RIPESIIQ-LSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFI 666 (887)
Q Consensus 595 lp------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l 666 (887)
.| ..+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|..... -+..+..+|++|+.|++++|.+
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL---GMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH---HHHHHHHHCTTCCEEEEESCSC
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH---HHHHHHhcCCCcCEEECcCCCC
Confidence 33 3366788999999987 566 33445554 89999999999973211 1111213789999999999998
Q ss_pred CCCCcchh-hhhcccCcccCCCCCCC
Q 045202 667 PNSSESDF-LDLYLSDNFKLDPNDLG 691 (887)
Q Consensus 667 ~~~~~~~~-~~l~~l~~l~L~~N~l~ 691 (887)
++.....+ ..++.|+.|++++|.++
T Consensus 494 ~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 494 GDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 54333322 34788999999999873
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=3.8e-18 Score=178.56 Aligned_cols=173 Identities=21% Similarity=0.315 Sum_probs=104.9
Q ss_pred CccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccC
Q 045202 462 NIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVG 541 (887)
Q Consensus 462 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~ 541 (887)
+.++++++++.++.+|..+. ++|+.|+|++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44556666666666666544 4677777777766666666666777777777777666666666666677777777777
Q ss_pred ccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCcccc
Q 045202 542 TAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFERIP 619 (887)
Q Consensus 542 n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~~lp 619 (887)
|.++.+|. .+..+++|++|++++|.+...+ +..+..+++|+.|+|++|.++.+|. .++.+++|+.|+|++|+++.+|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77666554 3455566666666555544221 2224555666666666666665544 4555666666666666666554
Q ss_pred h-hhhcCCCccEeeccccc
Q 045202 620 E-SIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 620 ~-~l~~l~~L~~L~L~~c~ 637 (887)
. .+..+++|+.|+|++|+
T Consensus 172 ~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTTCTTCCEEECCSCC
T ss_pred HHHHhCCCCCCEEEeeCCc
Confidence 3 45555666666666554
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=6.3e-20 Score=205.26 Aligned_cols=218 Identities=16% Similarity=0.115 Sum_probs=143.9
Q ss_pred cchhcCCCCcEEecccCC---CCccCCccc-------CCCCCCcEEEeeCCCCCC----CCchhhcCCCCCceeeccCcc
Q 045202 478 SSIECLSKLLHLDLVDCK---TLKSLPSGL-------GKLKSLGILSIDGCSNLQ----RLPEELGNLQALDSLHAVGTA 543 (887)
Q Consensus 478 ~~i~~l~~L~~L~L~~~~---~~~~lp~~l-------~~L~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~L~~n~ 543 (887)
..+..+++|+.|+|++|. +.+.+|..+ ..+++|++|+|++|.+.. .+|..+..+++|++|+|++|.
T Consensus 54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 345567777777777653 223444433 567777777777777665 366677777777777777777
Q ss_pred Ccc-----CCccccCC---------CCCCEEEccccCCCccccc---ccccCCCcccEEecccCCCCC------cccccc
Q 045202 544 ITE-----VPPSIVRL---------KRVRGIYLGRNRGLSLPIT---FSVDGLQNLLDLSLNDCCIME------LPESLG 600 (887)
Q Consensus 544 i~~-----lp~~l~~l---------~~L~~L~L~~n~~~~~~~~---~~~~~l~~L~~L~Ls~n~l~~------lp~~~~ 600 (887)
+.. ++..+..+ ++|++|++++|.+....++ ..+..+++|+.|+|++|.++. +|..+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 752 22233444 7788888877776655444 345677788888888887772 333677
Q ss_pred CCCCCcEEEcCCCCC-----cccchhhhcCCCccEeeccccccccccC-CCcccccc-cCccceEecccCCCCCC----C
Q 045202 601 LLSSVRELHLNGNNF-----ERIPESIIQLSNLKSLFIRYCERLQFLP-KLPCNLLV-GCASLHGTGIIRRFIPN----S 669 (887)
Q Consensus 601 ~l~~L~~L~L~~n~l-----~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~lp~~l~~-~~~~L~~L~l~~N~l~~----~ 669 (887)
.+++|+.|+|++|.+ ..+|..+..+++|++|+|++|.....-. .++..+.. .+++|+.|++++|.++. .
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 778888888888887 4677777788888888888886322211 12333322 37788888888888876 2
Q ss_pred Ccchh-hhhcccCcccCCCCCCCcchh
Q 045202 670 SESDF-LDLYLSDNFKLDPNDLGGIFK 695 (887)
Q Consensus 670 ~~~~~-~~l~~l~~l~L~~N~l~~i~~ 695 (887)
.+..+ ..++.|+.|+|++|.+++..+
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhcCCCceEEEccCCcCCcchh
Confidence 33333 446788888888888887764
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=5.6e-20 Score=205.68 Aligned_cols=247 Identities=17% Similarity=0.081 Sum_probs=168.3
Q ss_pred ccccCCCCcEEEecCCCCCCCCC----Ccc-CCCCccEEEeecCCCC--C-CCcccccCCccEEEccCCCCCCCCcchhc
Q 045202 411 LTQHLNKLAILNLSGRKNLQSLP----ARI-HLGLLKELNLSGCSKL--K-RLPEISSGNIETMRLDGTAPEELPSSIEC 482 (887)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~~~~lp----~~~-~l~~L~~L~L~~~~~l--~-~lp~~~~~~L~~L~L~~~~i~~lp~~i~~ 482 (887)
.+..+++|++|+|++|.+....+ ..+ .+++|++|+|++|..- . .+|... ..+...+..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~--------------~~l~~~l~~ 92 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL--------------RLLLQALLK 92 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH--------------HHHHHHHTT
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH--------------HHHHHHHhh
Confidence 44567788888888887665422 223 3777788887775211 1 111100 011122367
Q ss_pred CCCCcEEecccCCCCc----cCCcccCCCCCCcEEEeeCCCCCCCCc----hhhcCC---------CCCceeeccCccCc
Q 045202 483 LSKLLHLDLVDCKTLK----SLPSGLGKLKSLGILSIDGCSNLQRLP----EELGNL---------QALDSLHAVGTAIT 545 (887)
Q Consensus 483 l~~L~~L~L~~~~~~~----~lp~~l~~L~~L~~L~L~~~~~~~~~p----~~l~~l---------~~L~~L~L~~n~i~ 545 (887)
+++|++|+|++|.+.. .+|..+.++++|++|+|++|.+....+ ..+..+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 7888888888877665 466677778888888888887653333 333334 78888888888886
Q ss_pred --cCC---ccccCCCCCCEEEccccCCCccc----ccccccCCCcccEEecccCCCC-----CccccccCCCCCcEEEcC
Q 045202 546 --EVP---PSIVRLKRVRGIYLGRNRGLSLP----ITFSVDGLQNLLDLSLNDCCIM-----ELPESLGLLSSVRELHLN 611 (887)
Q Consensus 546 --~lp---~~l~~l~~L~~L~L~~n~~~~~~----~~~~~~~l~~L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~L~ 611 (887)
.+| ..+..+++|+.|++++|.+.... .+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|+
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 444 36677888888888888766322 2335778889999999999884 377888888999999999
Q ss_pred CCCCcc-----cchhhhc--CCCccEeeccccccccc-cCCCcccccccCccceEecccCCCCCCCCc
Q 045202 612 GNNFER-----IPESIIQ--LSNLKSLFIRYCERLQF-LPKLPCNLLVGCASLHGTGIIRRFIPNSSE 671 (887)
Q Consensus 612 ~n~l~~-----lp~~l~~--l~~L~~L~L~~c~~l~~-lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~ 671 (887)
+|.++. +|..+.. +++|++|+|++|..... +..+|..++.+|++|+.|++++|.+++..+
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 998873 4666744 88999999999863321 111455554568899999999999987653
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=1.4e-19 Score=200.36 Aligned_cols=256 Identities=12% Similarity=0.024 Sum_probs=143.5
Q ss_pred EEecCCCCCCCCCCccC-CCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCC-----cchhcCC-CCcEEeccc
Q 045202 421 LNLSGRKNLQSLPARIH-LGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELP-----SSIECLS-KLLHLDLVD 493 (887)
Q Consensus 421 L~L~~~~~~~~lp~~~~-l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~ 493 (887)
+.++.|.+.+.+|.... .++|++|+|++| .++..+ ..+..++ +|+.|+|++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n----------------------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 60 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN----------------------NLYSISTVELIQAFANTPASVTSLNLSG 60 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS----------------------CGGGSCHHHHHHHHHTCCTTCCEEECCS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC----------------------CCChHHHHHHHHHHHhCCCceeEEECcC
Confidence 45666666666665554 333666666665 444443 3355565 666666666
Q ss_pred CCCCccCCcccCCC-----CCCcEEEeeCCCCCCCCchhh----cCC-CCCceeeccCccCccCCc-c----ccC-CCCC
Q 045202 494 CKTLKSLPSGLGKL-----KSLGILSIDGCSNLQRLPEEL----GNL-QALDSLHAVGTAITEVPP-S----IVR-LKRV 557 (887)
Q Consensus 494 ~~~~~~lp~~l~~L-----~~L~~L~L~~~~~~~~~p~~l----~~l-~~L~~L~L~~n~i~~lp~-~----l~~-l~~L 557 (887)
|.+....+..+..+ ++|++|++++|.+....+..+ ..+ ++|++|++++|.++..+. . +.. .++|
T Consensus 61 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence 66555545444443 666666666666555444433 333 666777777776665443 1 223 2467
Q ss_pred CEEEccccCCCcc---cccccccCCC-cccEEecccCCCCCcc-----ccccCC-CCCcEEEcCCCCCcc-----cchhh
Q 045202 558 RGIYLGRNRGLSL---PITFSVDGLQ-NLLDLSLNDCCIMELP-----ESLGLL-SSVRELHLNGNNFER-----IPESI 622 (887)
Q Consensus 558 ~~L~L~~n~~~~~---~~~~~~~~l~-~L~~L~Ls~n~l~~lp-----~~~~~l-~~L~~L~L~~n~l~~-----lp~~l 622 (887)
++|++++|.+... .++..+..++ +|++|+|++|.+++.+ ..+..+ ++|++|+|++|.++. ++..+
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 7777766665432 1222233444 6777777777766522 233444 477777777777765 55555
Q ss_pred hcC-CCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcc-------hhhhhcccCcccCCCCCCCcch
Q 045202 623 IQL-SNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSES-------DFLDLYLSDNFKLDPNDLGGIF 694 (887)
Q Consensus 623 ~~l-~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~-------~~~~l~~l~~l~L~~N~l~~i~ 694 (887)
..+ ++|++|+|++|.....-++....+...+++|+.|++++|.+..+.+. .+..+..++.++|++|.+....
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 553 47777777777522111111111223566777777777776555443 2334566777888888877765
Q ss_pred hHHH
Q 045202 695 KGAL 698 (887)
Q Consensus 695 ~~~~ 698 (887)
+..+
T Consensus 301 ~~~~ 304 (362)
T 3goz_A 301 SIPI 304 (362)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 5443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=2.9e-18 Score=188.82 Aligned_cols=236 Identities=19% Similarity=0.140 Sum_probs=154.7
Q ss_pred cEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCc-ccCCCCCCcEE-EeeCC
Q 045202 442 KELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPS-GLGKLKSLGIL-SIDGC 518 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~-~l~~L~~L~~L-~L~~~ 518 (887)
++++.++ +.++.+|.....++++|+|++|.|+.+|+. |.++++|++|+|++|.+.+.+|. .|.++++|+++ .+++|
T Consensus 12 ~~v~C~~-~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEES-TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecC-CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3455555 345666655556777778888888888764 78888888888888887776654 56778877654 44555
Q ss_pred CCCCCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEc-cccCCCcccccccccCC-CcccEEecccCCCCCc
Q 045202 519 SNLQRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYL-GRNRGLSLPITFSVDGL-QNLLDLSLNDCCIMEL 595 (887)
Q Consensus 519 ~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L-~~n~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~l 595 (887)
++....|..|..+++|++|++++|.+..+|. .+....++..|++ +++.+...+. ..+..+ ..|+.|+|++|.++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc-cchhhcchhhhhhccccccccCC
Confidence 5555556778888888888888888887765 4455666777777 4455543332 224444 3577788888888887
Q ss_pred cccccCCCCCcEEEcCC-CCCcccch-hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcch
Q 045202 596 PESLGLLSSVRELHLNG-NNFERIPE-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESD 673 (887)
Q Consensus 596 p~~~~~l~~L~~L~L~~-n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~ 673 (887)
|......++|+.|++++ |.++.+|. .+..+++|+.|+|++|+ |..+|...+.++++|+.++. +.++.++ .
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~----l~~lp~~~~~~L~~L~~l~~--~~l~~lP--~ 241 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR----IHSLPSYGLENLKKLRARST--YNLKKLP--T 241 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC----CCCCCSSSCTTCCEEECTTC--TTCCCCC--C
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC----cCccChhhhccchHhhhccC--CCcCcCC--C
Confidence 77766677788888864 67777775 45778888888888875 44444444444555554443 3344433 2
Q ss_pred hhhhcccCcccCCC
Q 045202 674 FLDLYLSDNFKLDP 687 (887)
Q Consensus 674 ~~~l~~l~~l~L~~ 687 (887)
+..+..|+.+++++
T Consensus 242 l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 LEKLVALMEASLTY 255 (350)
T ss_dssp TTTCCSCCEEECSC
T ss_pred chhCcChhhCcCCC
Confidence 44555666666643
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=7.3e-18 Score=185.64 Aligned_cols=236 Identities=17% Similarity=0.213 Sum_probs=127.2
Q ss_pred eEEEecCCCCCCCCCCCCCCCccEEEcCCCCCccchh-hhcCCccCceeecCcCcCCCCCCCCcccccCCCCcEEEecCC
Q 045202 348 RYLHWHRYPLKSLPSNIHPEKLVLLKMPHSNIEQVFD-SVQHYLKLNQIITAAFNFFSKTPTPSLTQHLNKLAILNLSGR 426 (887)
Q Consensus 348 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~L~~~ 426 (887)
+.++++++.++++|..+ +.++++|+|++|+|+.++. .+.++++|++|+|++|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~------------------------- 65 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND------------------------- 65 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT-------------------------
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC-------------------------
Confidence 45778888888888876 5778888888888887763 34555555555554443
Q ss_pred CCCCCCCCc-c-CCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCC-cchhcCCCCcEEecccCCCCccCCcc
Q 045202 427 KNLQSLPAR-I-HLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELP-SSIECLSKLLHLDLVDCKTLKSLPSG 503 (887)
Q Consensus 427 ~~~~~lp~~-~-~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~ 503 (887)
+.+.+|.. + ++++|+.+.+.++ |.+..++ ..+..+++|++|++++|.+....+..
T Consensus 66 -i~~~i~~~~f~~L~~l~~~l~~~~---------------------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 66 -VLEVIEADVFSNLPKLHEIRIEKA---------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp -TCCEECTTSBCSCTTCCEEEEEEE---------------------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred -CCCccChhHhhcchhhhhhhcccC---------------------CcccccCchhhhhccccccccccccccccCCchh
Confidence 33333322 2 2444444333222 3333443 33666777777777776655554445
Q ss_pred cCCCCCCcEEEeeCCCCCCCCch-hhcCCC-CCceeeccCccCccCCccccCCCCCCEEEcc-ccCCCcccccccccCCC
Q 045202 504 LGKLKSLGILSIDGCSNLQRLPE-ELGNLQ-ALDSLHAVGTAITEVPPSIVRLKRVRGIYLG-RNRGLSLPITFSVDGLQ 580 (887)
Q Consensus 504 l~~L~~L~~L~L~~~~~~~~~p~-~l~~l~-~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~-~n~~~~~~~~~~~~~l~ 580 (887)
+....++..|++.++..+..+|. .+..+. .++.|++++|.++.+|.......+|+.|+++ +|.+..++ +..+.+++
T Consensus 124 ~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~ 202 (350)
T 4ay9_X 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGAS 202 (350)
T ss_dssp TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEE
T ss_pred hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCC-HHHhccCc
Confidence 55666677777766555544443 344443 4677777777777776655555555555553 33333221 12244445
Q ss_pred cccEEecccCCCCCccccccCCCCCcEEEcCCC-CCcccchhhhcCCCccEeeccc
Q 045202 581 NLLDLSLNDCCIMELPESLGLLSSVRELHLNGN-NFERIPESIIQLSNLKSLFIRY 635 (887)
Q Consensus 581 ~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~ 635 (887)
+|+.|+|++|+++.+|.. .+.+|+.|.+.++ +++.+| .+..+++|+.+++.+
T Consensus 203 ~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 555555555555544432 1333444433332 344444 244444455444443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=8.6e-18 Score=194.95 Aligned_cols=184 Identities=21% Similarity=0.255 Sum_probs=94.5
Q ss_pred CCcEEEecCCCCCCCCCCccCCCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCC
Q 045202 417 KLAILNLSGRKNLQSLPARIHLGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKT 496 (887)
Q Consensus 417 ~L~~L~L~~~~~~~~lp~~~~l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~ 496 (887)
+|+.|+|++|.+.+ +|..+ .++|++|+|++|. +..+| ...++|++|+|++|.++.+|. +.. +|+.|+|++|.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~-l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNA-LISLP-ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSC-CSCCC-CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCC-Ccccc-cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence 67777777776544 55543 3566666666653 33555 222556666666665555555 433 555556555554
Q ss_pred CccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccc
Q 045202 497 LKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSV 576 (887)
Q Consensus 497 ~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 576 (887)
.+ +|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|+|++|.+.. +|. +
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~-~ 198 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA-V 198 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC-C
T ss_pred CC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh-H
Confidence 33 444 45555555555555433 343 34555555555555555554 33 555555555555442 222 2
Q ss_pred cCCCcc-------cEEecccCCCCCccccccCCCCCcEEEcCCCCCc-ccchhhh
Q 045202 577 DGLQNL-------LDLSLNDCCIMELPESLGLLSSVRELHLNGNNFE-RIPESII 623 (887)
Q Consensus 577 ~~l~~L-------~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~-~lp~~l~ 623 (887)
.. +| +.|+|++|.++.+|..+..+++|+.|+|++|+++ .+|..+.
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 22 33 5555555555555554444555555555555554 3444433
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=6.9e-18 Score=195.72 Aligned_cols=177 Identities=23% Similarity=0.265 Sum_probs=88.2
Q ss_pred CccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC
Q 045202 440 LLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS 519 (887)
Q Consensus 440 ~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~ 519 (887)
+|+.|+|++|. +..+|....++|++|+|++|.++.+| ..+++|+.|+|++|.+.+ +|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCC-CCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCc
Confidence 56666666643 33355433455555555555555555 334555555555554433 444 333 55555555554
Q ss_pred CCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccc
Q 045202 520 NLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESL 599 (887)
Q Consensus 520 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~ 599 (887)
+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|++++|.+.. +|. +. ++|+.|+|++|.++.+|. +
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~~lp~-~ 198 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLESLPA-V 198 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCSSCCC-C
T ss_pred CCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCCchhh-H
Confidence 443 343 34555555555555555544 34455555555555443 222 22 455555555555555544 3
Q ss_pred cCCCCC-------cEEEcCCCCCcccchhhhcCCCccEeeccccccc
Q 045202 600 GLLSSV-------RELHLNGNNFERIPESIIQLSNLKSLFIRYCERL 639 (887)
Q Consensus 600 ~~l~~L-------~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 639 (887)
.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|+..
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 22 44 5555555555555554544555555555555433
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=2e-17 Score=173.09 Aligned_cols=177 Identities=24% Similarity=0.325 Sum_probs=151.7
Q ss_pred CCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeC
Q 045202 439 GLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDG 517 (887)
Q Consensus 439 ~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~ 517 (887)
...++++++++ .+..+|.....+++.|+|++|.+..+++ .+.++++|++|+|++|.+.+..|..+.++++|++|++++
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34567777764 5666776666788888999899988776 489999999999999998888888899999999999999
Q ss_pred CCCCCCCchhhcCCCCCceeeccCccCccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc
Q 045202 518 CSNLQRLPEELGNLQALDSLHAVGTAITEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP 596 (887)
Q Consensus 518 ~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp 596 (887)
|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+...+ +..+..+++|+.|+|++|.++.+|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccC
Confidence 998887778899999999999999999988875 688999999999999887433 345889999999999999999976
Q ss_pred c-cccCCCCCcEEEcCCCCCcc
Q 045202 597 E-SLGLLSSVRELHLNGNNFER 617 (887)
Q Consensus 597 ~-~~~~l~~L~~L~L~~n~l~~ 617 (887)
. .+..+++|+.|+|++|.+..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 5 78899999999999999874
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.9e-19 Score=199.40 Aligned_cols=251 Identities=15% Similarity=0.075 Sum_probs=186.7
Q ss_pred EEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCC----cccCCCC-CCcEEEeeCCCCCCCCchhhcCC-----CC
Q 045202 465 TMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLP----SGLGKLK-SLGILSIDGCSNLQRLPEELGNL-----QA 533 (887)
Q Consensus 465 ~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp----~~l~~L~-~L~~L~L~~~~~~~~~p~~l~~l-----~~ 533 (887)
++.++.|.+....+. +...++|+.|+|++|.+....+ ..+.+++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456778888855545 4555569999999999766655 6788898 99999999999888777777665 99
Q ss_pred CceeeccCccCccCCcc-----ccCC-CCCCEEEccccCCCcccccc---cccC-CCcccEEecccCCCCC-----cccc
Q 045202 534 LDSLHAVGTAITEVPPS-----IVRL-KRVRGIYLGRNRGLSLPITF---SVDG-LQNLLDLSLNDCCIME-----LPES 598 (887)
Q Consensus 534 L~~L~L~~n~i~~lp~~-----l~~l-~~L~~L~L~~n~~~~~~~~~---~~~~-l~~L~~L~Ls~n~l~~-----lp~~ 598 (887)
|++|++++|.++..+.. +..+ ++|+.|++++|.+....... .+.. .++|++|+|++|.+++ ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999966542 5555 89999999999976543222 2334 3699999999999984 5556
Q ss_pred ccCCC-CCcEEEcCCCCCcccc-h----hhhcC-CCccEeeccccccccccC-CCcccccccCccceEecccCCCCCCCC
Q 045202 599 LGLLS-SVRELHLNGNNFERIP-E----SIIQL-SNLKSLFIRYCERLQFLP-KLPCNLLVGCASLHGTGIIRRFIPNSS 670 (887)
Q Consensus 599 ~~~l~-~L~~L~L~~n~l~~lp-~----~l~~l-~~L~~L~L~~c~~l~~lp-~lp~~l~~~~~~L~~L~l~~N~l~~~~ 670 (887)
+..++ +|++|+|++|+++..+ . .+..+ ++|++|+|++|.....-. .++..+...+++|+.|++++|.++...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 66666 9999999999998544 2 44556 599999999997332111 134444334679999999999999877
Q ss_pred cchh----hhhcccCcccCCCCCCCcchhHHHH-------HhHHHHHHhhhhhhhc
Q 045202 671 ESDF----LDLYLSDNFKLDPNDLGGIFKGALQ-------KIQLLATARLKEAREK 715 (887)
Q Consensus 671 ~~~~----~~l~~l~~l~L~~N~l~~i~~~~~~-------~l~~L~~l~l~~n~~~ 715 (887)
...+ ..+..|+.|+|++|.+..+.+..+. .++.|+.+++++|...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 6443 4568899999999998777665433 3445666777777443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=5.5e-17 Score=173.58 Aligned_cols=166 Identities=26% Similarity=0.351 Sum_probs=123.5
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
++|++|++++|.+..++. +..+++|+.|++++|.+.+. +. +.++++|++|++++|.+.+ +| .+..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 455666666666666653 77778888888888775543 33 7778888888888876544 33 37778888888888
Q ss_pred CccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch
Q 045202 541 GTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 541 ~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
+|.++.+ +.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.+|.
T Consensus 121 ~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 121 HNGISDI-NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp TSCCCCC-GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCcCCCC-hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 8888776 4577788888888888877654 347778888888888888887765 7788888888888888888774
Q ss_pred hhhcCCCccEeeccccc
Q 045202 621 SIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 621 ~l~~l~~L~~L~L~~c~ 637 (887)
+..+++|+.|+|++|+
T Consensus 196 -l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GTTCTTCSEEEEEEEE
T ss_pred -hccCCCCCEEECcCCc
Confidence 7788888888888886
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.1e-17 Score=178.90 Aligned_cols=196 Identities=18% Similarity=0.226 Sum_probs=157.9
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
+..+.+.++.+..+. .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 26 ~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 334455555555443 2567899999999998754 445 48889999999999998766544 899999999999999
Q ss_pred cCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccchhh
Q 045202 543 AITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPESI 622 (887)
Q Consensus 543 ~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~l 622 (887)
.++.+|. +..+++|+.|++++|.+... ..+..+++|+.|++++|.++++ ..++.+++|+.|++++|+++.++. +
T Consensus 101 ~l~~~~~-l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l 174 (291)
T 1h6t_A 101 KVKDLSS-LKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-L 174 (291)
T ss_dssp CCCCGGG-GTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred cCCCChh-hccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-h
Confidence 9998765 89999999999999988754 3488899999999999999988 578889999999999999998876 8
Q ss_pred hcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhh
Q 045202 623 IQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFL 675 (887)
Q Consensus 623 ~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~ 675 (887)
..+++|+.|+|++|. +..++. ..++++|+.|++++|.++..+.....
T Consensus 175 ~~l~~L~~L~L~~N~----i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~~~~ 221 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNH----ISDLRA--LAGLKNLDVLELFSQECLNKPINHQS 221 (291)
T ss_dssp TTCTTCCEEECCSSC----CCBCGG--GTTCTTCSEEEEEEEEEECCCEECCS
T ss_pred cCCCccCEEECCCCc----CCCChh--hccCCCCCEEECcCCcccCCcccccc
Confidence 899999999999995 333332 23789999999999998875544443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=3e-17 Score=192.53 Aligned_cols=190 Identities=25% Similarity=0.314 Sum_probs=151.2
Q ss_pred CCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEee
Q 045202 438 LGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSID 516 (887)
Q Consensus 438 l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~ 516 (887)
+..+..+++..+. +..+..... .+|+.|++++|.+..+| .+..+++|+.|+|++|.+.+..| +..+++|+.|+|+
T Consensus 20 l~~l~~l~l~~~~-i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKS-VTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSC-TTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCC-cccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3344445555432 333332222 78999999999999887 58899999999999988665444 8899999999999
Q ss_pred CCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc
Q 045202 517 GCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP 596 (887)
Q Consensus 517 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp 596 (887)
+|.+.. +| .+..+++|+.|+|++|.+..++ .+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+.+++
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch
Confidence 987654 33 6888999999999999998864 588899999999999987754 45788999999999999998876
Q ss_pred ccccCCCCCcEEEcCCCCCcccchhhhcCCCccEeeccccccc
Q 045202 597 ESLGLLSSVRELHLNGNNFERIPESIIQLSNLKSLFIRYCERL 639 (887)
Q Consensus 597 ~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~~l 639 (887)
. +..+++|+.|+|++|+|+.+| .+..+++|+.|+|++|+..
T Consensus 170 ~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 6 888999999999999999886 5888999999999998743
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.4e-16 Score=186.88 Aligned_cols=173 Identities=24% Similarity=0.290 Sum_probs=151.8
Q ss_pred CCCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEe
Q 045202 437 HLGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSI 515 (887)
Q Consensus 437 ~l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L 515 (887)
.+++|+.|++++|. +..+|.+.. ++|+.|+|++|.+..+++ +..+++|+.|+|++|.+.. +| .+..+++|++|+|
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 48999999999975 666776555 999999999999999987 9999999999999997654 45 6899999999999
Q ss_pred eCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCc
Q 045202 516 DGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMEL 595 (887)
Q Consensus 516 ~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l 595 (887)
++|.+.. + ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+.... . +..+++|+.|+|++|.++++
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCCCCCC
Confidence 9998765 3 4588999999999999999988 68999999999999999987543 3 88999999999999999998
Q ss_pred cccccCCCCCcEEEcCCCCCcccch
Q 045202 596 PESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 596 p~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
| .+..+++|+.|+|++|++...|.
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEECCCC
T ss_pred h-HHccCCCCCEEEccCCcCcCCcc
Confidence 5 58899999999999999987663
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=3.9e-16 Score=158.24 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=94.9
Q ss_pred EEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccC
Q 045202 465 TMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAI 544 (887)
Q Consensus 465 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i 544 (887)
.++.+++.+..+|..+ .++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444444444444433 23555555555554433333445555555555555554444344455555566666666655
Q ss_pred ccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcccc-ccCCCCCcEEEcCCCCCcccchhh
Q 045202 545 TEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPES-LGLLSSVRELHLNGNNFERIPESI 622 (887)
Q Consensus 545 ~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~n~l~~lp~~l 622 (887)
+.+|.. +..+++|++|++++|.+...+ +..+..+++|+.|++++|.++++|.. +..+++|+.|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 555443 455566666666555554321 22355666677777777766665543 566777777777777544
Q ss_pred hcCCCccEeeccccccccccCC
Q 045202 623 IQLSNLKSLFIRYCERLQFLPK 644 (887)
Q Consensus 623 ~~l~~L~~L~L~~c~~l~~lp~ 644 (887)
..+++|+.|+++.|...+.+|.
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBC
T ss_pred cCCCCHHHHHHHHHhCCceeec
Confidence 2345677777777766666664
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=6.3e-16 Score=156.69 Aligned_cols=168 Identities=19% Similarity=0.159 Sum_probs=79.2
Q ss_pred CCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcC
Q 045202 452 LKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGN 530 (887)
Q Consensus 452 l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~ 530 (887)
+..+|....++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..
T Consensus 19 l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 19 RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 3334433334555555555555544443 345555555555555444333333445555555555555444433334455
Q ss_pred CCCCceeeccCccCccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEE
Q 045202 531 LQALDSLHAVGTAITEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELH 609 (887)
Q Consensus 531 l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~ 609 (887)
+++|++|++++|.++.+|.. +..+++|+.|++++|.+...+ +..+..+++|+.|++++|.+. +.+++|+.|+
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~ 171 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLS 171 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC------CCTTTTHHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee------cCCCCHHHHH
Confidence 55555555555555544442 344555555555555444221 122444555555555555332 2234455555
Q ss_pred cCCCCCc-ccchhhhcCC
Q 045202 610 LNGNNFE-RIPESIIQLS 626 (887)
Q Consensus 610 L~~n~l~-~lp~~l~~l~ 626 (887)
++.|+++ .+|.+++.++
T Consensus 172 ~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 172 EWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp HHHHHCTTTBBCTTSSBC
T ss_pred HHHHhCCceeeccCcccc
Confidence 5555554 4554444433
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.5e-16 Score=167.39 Aligned_cols=165 Identities=20% Similarity=0.225 Sum_probs=118.1
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
.++..++++++.++.++ .+..+++|+.|++++|.+ ..+| .+..+++|++|++++|.+.+..| +..+++|+.|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 45566677777777777 577888888888888764 4555 57778888888888877655433 7788888888888
Q ss_pred CccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch
Q 045202 541 GTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 541 ~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
+|.++.+|.... ++|+.|++++|.+... + .+..+++|+.|++++|.+++++ .++.+++|+.|++++|+++.+ .
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~ 166 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G 166 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H
Confidence 888887765333 7777777777776643 2 3667777777777777777765 566777777777777777766 4
Q ss_pred hhhcCCCccEeeccccc
Q 045202 621 SIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 621 ~l~~l~~L~~L~L~~c~ 637 (887)
.+..+++|+.|+|++|+
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 56677777777777775
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=8.2e-16 Score=169.96 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=107.3
Q ss_pred cEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccC-CCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 464 ETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLG-KLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
+.++++++.++.+|..+. ..++.|+|++|.+.+..+..+. ++++|++|+|++|.+.+..|..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 345555555666665432 3466666666665554444454 6666666666666655555556666666666666666
Q ss_pred cCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccc----cCCCCCcEEEcCCCCCcc
Q 045202 543 AITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESL----GLLSSVRELHLNGNNFER 617 (887)
Q Consensus 543 ~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~----~~l~~L~~L~L~~n~l~~ 617 (887)
.++.++. .+..+++|+.|+|++|.+... .+..+.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEE-CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 6665554 456666666666666665532 2445667777777777777777776554 457778888888887777
Q ss_pred cc-hhhhcCCC--ccEeeccccc
Q 045202 618 IP-ESIIQLSN--LKSLFIRYCE 637 (887)
Q Consensus 618 lp-~~l~~l~~--L~~L~L~~c~ 637 (887)
+| ..+..++. |+.|+|++|+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 77 35666665 3677777765
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=1.3e-18 Score=203.09 Aligned_cols=172 Identities=17% Similarity=0.152 Sum_probs=105.4
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCC-------------CCccCCcccCCCCCCcEEE-eeCCCCCCCCch
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCK-------------TLKSLPSGLGKLKSLGILS-IDGCSNLQRLPE 526 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~-------------~~~~lp~~l~~L~~L~~L~-L~~~~~~~~~p~ 526 (887)
++|+.|+|++|.++.+|.+++++++|+.|++++|. ..+..|..++++++|+.|+ ++.|.. ..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chhhh
Confidence 56777777778888899999999999999987664 3445556666666777666 333321 11110
Q ss_pred ------hhcC--CCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcccc
Q 045202 527 ------ELGN--LQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPES 598 (887)
Q Consensus 527 ------~l~~--l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~ 598 (887)
.+.. ...|+.|++++|.++.+|. +..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++++| .
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 0000 1135666666666666654 666666666666666655 34555666666666666666666655 5
Q ss_pred ccCCCCCcEEEcCCCCCccc--chhhhcCCCccEeeccccc
Q 045202 599 LGLLSSVRELHLNGNNFERI--PESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 599 ~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~c~ 637 (887)
++.+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|+
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 66666666666666666655 5566666666666666664
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=8.1e-16 Score=154.38 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=73.2
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
|++|++++|.+..+| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 333333334444444 35555555555555552 1222 23445555555555555444444444444444444444444
Q ss_pred cCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCC-CCCccccccCCCCCcEEEcCCCCCcccchh
Q 045202 543 AITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCC-IMELPESLGLLSSVRELHLNGNNFERIPES 621 (887)
Q Consensus 543 ~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~~~~l~~L~~L~L~~n~l~~lp~~ 621 (887)
.++. ..+..+..+++|+.|++++|. ++++| .+..+++|+.|++++|+++.++ .
T Consensus 123 ~i~~------------------------~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~ 176 (197)
T 4ezg_A 123 AHDD------------------------SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-G 176 (197)
T ss_dssp BCBG------------------------GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-T
T ss_pred ccCc------------------------HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-H
Confidence 4442 112334455555555555554 44454 4555666666666666666555 5
Q ss_pred hhcCCCccEeeccccc
Q 045202 622 IIQLSNLKSLFIRYCE 637 (887)
Q Consensus 622 l~~l~~L~~L~L~~c~ 637 (887)
+..+++|++|++++|+
T Consensus 177 l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGCSSCCEEEECBC-
T ss_pred hccCCCCCEEEeeCcc
Confidence 5666666666666664
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=2.3e-16 Score=158.41 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=109.3
Q ss_pred CCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccE
Q 045202 505 GKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLD 584 (887)
Q Consensus 505 ~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 584 (887)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.. ..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCE
Confidence 34555555555555443 334 4555566666666666554443 56667777777777776543 23455788899999
Q ss_pred EecccCCCCC-ccccccCCCCCcEEEcCCCC-CcccchhhhcCCCccEeeccccccccccCCCcccccccCccceEeccc
Q 045202 585 LSLNDCCIME-LPESLGLLSSVRELHLNGNN-FERIPESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGII 662 (887)
Q Consensus 585 L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~ 662 (887)
|++++|.+++ .|..++.+++|++|++++|. ++.+| .+..+++|++|++++|. +..++ ...++++|+.|+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~----i~~~~--~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG----VHDYR--GIEDFPKLNQLYAF 189 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC----CCCCT--TGGGCSSCCEEEEC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC----CcChH--HhccCCCCCEEEee
Confidence 9999999997 77889999999999999998 88888 79999999999999996 33333 12378999999999
Q ss_pred CCCCCC
Q 045202 663 RRFIPN 668 (887)
Q Consensus 663 ~N~l~~ 668 (887)
+|.|.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 999875
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.63 E-value=2.2e-15 Score=154.00 Aligned_cols=150 Identities=23% Similarity=0.318 Sum_probs=101.2
Q ss_pred cEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCcc
Q 045202 464 ETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTA 543 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 543 (887)
+.++++++.++.+|..+. ++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666677777776554 577888888777666666677778888888888877777667777788888888888888
Q ss_pred CccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCc
Q 045202 544 ITEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 544 i~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~ 616 (887)
++.+|.. +..+++|+.|+|++|.+.... +..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7777664 456666666666666654332 3345566666666666666666543 3556666666666666554
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=3.6e-15 Score=153.39 Aligned_cols=150 Identities=20% Similarity=0.237 Sum_probs=87.0
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
.+.++.+++.+..+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3456666666666666543 66777777777666666666667777777777776654444455566666777777766
Q ss_pred cCccCCcc-ccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCCCCcEEEcCCCCCc
Q 045202 543 AITEVPPS-IVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 543 ~i~~lp~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~L~~n~l~ 616 (887)
.++.+|.. +..+++|+.|++++|.+. .+|..+..+++|+.|+|++|.++.+| ..+..+++|+.|+|++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66665542 345555555555555544 33344445555555555555555544 23444555555555555544
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=2.7e-16 Score=189.27 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=93.1
Q ss_pred cCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccC
Q 045202 499 SLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDG 578 (887)
Q Consensus 499 ~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 578 (887)
..|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++.+|..+..+++|++|+|++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcC
Confidence 44556667777777777776654 5666666777777777777777777777777777777777777766 45666777
Q ss_pred CCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCc-ccchhhhcCC-CccEeeccccccccccC
Q 045202 579 LQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFE-RIPESIIQLS-NLKSLFIRYCERLQFLP 643 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~c~~l~~lp 643 (887)
+++|++|+|++|.++.+|..++.+++|+.|+|++|.|+ .+|..+..+. .+..|+|++|...+.+|
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 77777777777777777777777777888888877777 4455554432 22235677776554444
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.61 E-value=1.9e-15 Score=166.95 Aligned_cols=173 Identities=20% Similarity=0.210 Sum_probs=140.9
Q ss_pred cEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcc-hh-cCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC
Q 045202 442 KELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSS-IE-CLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS 519 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~ 519 (887)
++++++++ .+..+|......++.|+|++|.|+.++.. +. .+++|+.|+|++|.+....|..|.++++|++|+|++|.
T Consensus 21 ~~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 56777764 56667766667788888888999888776 55 89999999999998877777789999999999999998
Q ss_pred CCCCCchhhcCCCCCceeeccCccCccC-CccccCCCCCCEEEccccCCCcccccccc---cCCCcccEEecccCCCCCc
Q 045202 520 NLQRLPEELGNLQALDSLHAVGTAITEV-PPSIVRLKRVRGIYLGRNRGLSLPITFSV---DGLQNLLDLSLNDCCIMEL 595 (887)
Q Consensus 520 ~~~~~p~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~l 595 (887)
+....+..|..+++|+.|+|++|.+..+ |..+..+++|+.|+|++|.+...+. ..+ ..+++|+.|+|++|.++.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCcc
Confidence 8777777889999999999999999976 4578899999999999998875432 223 5789999999999999998
Q ss_pred c-ccccCCCC--CcEEEcCCCCCc
Q 045202 596 P-ESLGLLSS--VRELHLNGNNFE 616 (887)
Q Consensus 596 p-~~~~~l~~--L~~L~L~~n~l~ 616 (887)
| ..+..++. |+.|+|++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 7 45677776 488999999887
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=5.6e-15 Score=150.92 Aligned_cols=149 Identities=19% Similarity=0.181 Sum_probs=78.0
Q ss_pred EEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCC-cccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCcc
Q 045202 465 TMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLP-SGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTA 543 (887)
Q Consensus 465 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 543 (887)
.++++++.++.+|..+. ..++.|+|++|.+.+..| ..|.++++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45555555555555432 234556666655444433 234555556666665555554444455555556666666655
Q ss_pred CccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCc-cccccCCCCCcEEEcCCCCCc
Q 045202 544 ITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMEL-PESLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 544 i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~n~l~ 616 (887)
++.++. .+..+++|++|+|++|.+... .|..+.++++|+.|+|++|.++.+ |..+..+++|+.|+|++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555444 244455555555544444322 133344555555555555555553 445555666666666666554
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=4.5e-15 Score=151.62 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=103.0
Q ss_pred ceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCC
Q 045202 535 DSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGN 613 (887)
Q Consensus 535 ~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n 613 (887)
+.+++++|.++.+|..+. ..++.|++++|.+.....+..+..+++|+.|+|++|.++.++. .+..+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 355666666666665442 3446666666665544333446667777777777777776553 6777777777777777
Q ss_pred CCcccch-hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCc
Q 045202 614 NFERIPE-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGG 692 (887)
Q Consensus 614 ~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~ 692 (887)
+++.+|. .+..+++|++|+|++|. +..+++..+.++++|+.|++++|.|+++.+..|..+..|+.++|++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR----ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC----CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc----CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7776654 46677777777777776 333333333466777788888888887777777778888888888888876
Q ss_pred chh
Q 045202 693 IFK 695 (887)
Q Consensus 693 i~~ 695 (887)
-.+
T Consensus 168 ~c~ 170 (220)
T 2v70_A 168 NCY 170 (220)
T ss_dssp SGG
T ss_pred CCc
Confidence 543
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1.7e-17 Score=193.59 Aligned_cols=152 Identities=19% Similarity=0.232 Sum_probs=87.4
Q ss_pred hcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC-------------CCCCCchhhcCCCCCceee-ccCccCcc
Q 045202 481 ECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS-------------NLQRLPEELGNLQALDSLH-AVGTAITE 546 (887)
Q Consensus 481 ~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~-------------~~~~~p~~l~~l~~L~~L~-L~~n~i~~ 546 (887)
..+++|+.|+|++|. ++.+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 567889999999977 46889999999999999987654 4556677777888888887 56554433
Q ss_pred CCcc------ccC--CCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCccc
Q 045202 547 VPPS------IVR--LKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERI 618 (887)
Q Consensus 547 lp~~------l~~--l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l 618 (887)
++.. +.. ...|+.|++++|.+.. +|. ++.+++|+.|+|++|.++.+|..++.+++|+.|+|++|+|+.+
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 3220 000 1134444444444442 222 4444444444444444444444444444444444444444444
Q ss_pred chhhhcCCCccEeeccccc
Q 045202 619 PESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 619 p~~l~~l~~L~~L~L~~c~ 637 (887)
| .++.+++|+.|+|++|.
T Consensus 502 p-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp G-GGTTCSSCCEEECCSSC
T ss_pred c-ccCCCCCCcEEECCCCC
Confidence 4 44444444444444443
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.4e-14 Score=147.26 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=123.4
Q ss_pred ccEEEeecCCCCCCCcccccCCccEEEccCCCCCCC-CcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC
Q 045202 441 LKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEEL-PSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS 519 (887)
Q Consensus 441 L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~ 519 (887)
-+.++.++ ..+..+|....++|++|+|++|.+..+ |..+..+++|+.|+|++|.+....+..|.++++|++|+|++|.
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 34566655 345666665557888888888888877 4558899999999999988755555667899999999999998
Q ss_pred CCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC
Q 045202 520 NLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME 594 (887)
Q Consensus 520 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 594 (887)
+.+..+..+..+++|++|++++|.++.+|..+..+++|+.|++++|.+...+ +..+..+++|+.|+|++|.+..
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBCT
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCccC
Confidence 8777777789999999999999999999999999999999999999887543 3457889999999999998764
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.57 E-value=1.3e-14 Score=152.54 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=127.0
Q ss_pred CCCccEEEeecCCCCCCCccccc-CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEee
Q 045202 438 LGLLKELNLSGCSKLKRLPEISS-GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSID 516 (887)
Q Consensus 438 l~~L~~L~L~~~~~l~~lp~~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~ 516 (887)
+.++..++++++ .+..++.... ++|++|++++|.+..+| .+..+++|+.|+|++|.+.+ +|. +.++++|++|+++
T Consensus 18 l~~l~~l~l~~~-~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCC-CcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 334444444443 2333332222 66677777777777777 67888888888888887554 443 7888888888888
Q ss_pred CCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc
Q 045202 517 GCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP 596 (887)
Q Consensus 517 ~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp 596 (887)
+|.+.+ +|... . ++|+.|++++|.++.++ .+..+++|+.|++++|++... + .+..+++|+.|++++|.++++
T Consensus 94 ~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNGIP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTTCC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCccc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcch-
Confidence 887654 44332 2 88999999999888875 588899999999999988754 3 488899999999999999988
Q ss_pred ccccCCCCCcEEEcCCCCCcccch
Q 045202 597 ESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 597 ~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
..+..+++|+.|++++|.++..|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred HHhccCCCCCEEeCCCCcccCCcc
Confidence 678889999999999999887663
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=7.9e-16 Score=185.16 Aligned_cols=189 Identities=15% Similarity=0.070 Sum_probs=118.3
Q ss_pred CCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeecc
Q 045202 461 GNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAV 540 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~ 540 (887)
+.++.|+|.++.+...+..+ |+.++|+.+. +..++++.|. ....|..+..+++|+.|+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~--------------i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls 232 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYS--------------IDEDDDIENR-MVMPKDSKYDDQLWHALDLS 232 (727)
T ss_dssp ---------------------------------------------------------------------CCCCCCEEECT
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCccc--------------ccCccccccc-eecChhhhccCCCCcEEECC
Confidence 34566666666666554432 3344444432 1222333333 33567889999999999999
Q ss_pred CccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch
Q 045202 541 GTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE 620 (887)
Q Consensus 541 ~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~ 620 (887)
+|.+..+|..+..+++|++|+|++|.+. .+|..+.++++|+.|+|++|.++.+|..++.+++|++|+|++|.|+.+|.
T Consensus 233 ~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~ 310 (727)
T 4b8c_D 233 NLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPW 310 (727)
T ss_dssp TSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCS
T ss_pred CCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccCh
Confidence 9999999999999999999999999988 67788999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchh
Q 045202 621 SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDF 674 (887)
Q Consensus 621 ~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~ 674 (887)
.|+.+++|+.|+|++|+..+.+|...... . ..+..+++++|.+++..+..+
T Consensus 311 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~--~-~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLEKQFLKILTEK--S-VTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp STTSCTTCCCEECTTSCCCSHHHHHHHHH--H-HHHHHHHHHHCCCCCCCCCC-
T ss_pred hhhcCCCccEEeCCCCccCCCChHHHhhc--c-hhhhHHhhccCcccCcCcccc
Confidence 99999999999999998665555322111 0 112235677777776665543
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=2.9e-14 Score=145.59 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=122.3
Q ss_pred cEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCc-chhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCC
Q 045202 442 KELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPS-SIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSN 520 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~ 520 (887)
+.++++++ .+..+|.....+|+.|+|++|.|+.+|+ .+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 45566553 4566666555788888888888888876 588899999999999988888888899999999999999887
Q ss_pred CCCCchhhcCCCCCceeeccCccCccCC-ccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCC
Q 045202 521 LQRLPEELGNLQALDSLHAVGTAITEVP-PSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIM 593 (887)
Q Consensus 521 ~~~~p~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 593 (887)
....+..+..+++|++|+|++|.++.++ ..+..+++|+.|+|++|.+.... +..+..+++|+.|+|++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcC
Confidence 7666666888999999999999999774 57889999999999999877544 345788899999999999765
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1e-14 Score=142.20 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCcEEecccCCCC-ccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEc
Q 045202 484 SKLLHLDLVDCKTL-KSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYL 562 (887)
Q Consensus 484 ~~L~~L~L~~~~~~-~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L 562 (887)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~---------------- 85 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG---------------- 85 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS----------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch----------------
Confidence 44555555555443 34444445555555555555443332 334444444444444444443
Q ss_pred cccCCCcccccccccCCCcccEEecccCCCCCcc--ccccCCCCCcEEEcCCCCCcccch----hhhcCCCccEeecccc
Q 045202 563 GRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP--ESLGLLSSVRELHLNGNNFERIPE----SIIQLSNLKSLFIRYC 636 (887)
Q Consensus 563 ~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~c 636 (887)
. +|..+..+++|+.|++++|.++++| ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|
T Consensus 86 -------~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 86 -------G-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp -------C-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred -------H-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 1 2232333445555555555555543 455556666666666666665554 4556666666666666
Q ss_pred c
Q 045202 637 E 637 (887)
Q Consensus 637 ~ 637 (887)
.
T Consensus 158 ~ 158 (168)
T 2ell_A 158 E 158 (168)
T ss_dssp T
T ss_pred C
Confidence 4
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=1.9e-14 Score=140.37 Aligned_cols=134 Identities=20% Similarity=0.176 Sum_probs=108.1
Q ss_pred CCCCceeeccCccCc--cCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCCcE
Q 045202 531 LQALDSLHAVGTAIT--EVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRE 607 (887)
Q Consensus 531 l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~ 607 (887)
.++|+.|++++|.++ .+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++. +|..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 6666667777777777777776644 457889999999999999998 7878888999999
Q ss_pred EEcCCCCCcccc--hhhhcCCCccEeeccccccccccCCCcc---cccccCccceEecccCCCCCCCCc
Q 045202 608 LHLNGNNFERIP--ESIIQLSNLKSLFIRYCERLQFLPKLPC---NLLVGCASLHGTGIIRRFIPNSSE 671 (887)
Q Consensus 608 L~L~~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp~lp~---~l~~~~~~L~~L~l~~N~l~~~~~ 671 (887)
|+|++|+++.+| ..+..+++|+.|+|++|+ +..+|. ..+..+++|+.|++++|.+...+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~----l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE----VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG----GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc----CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 999999999887 789999999999999996 334444 444589999999999999876543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=4.1e-14 Score=134.88 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=66.1
Q ss_pred CCCcEEEeeCCCCC-CCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEe
Q 045202 508 KSLGILSIDGCSNL-QRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLS 586 (887)
Q Consensus 508 ~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 586 (887)
++|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+... +|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEE
Confidence 34444444444443 34444444444555555555544444 3444455555555555544321 333344455566666
Q ss_pred cccCCCCCcc--ccccCCCCCcEEEcCCCCCcccch----hhhcCCCccEeecc
Q 045202 587 LNDCCIMELP--ESLGLLSSVRELHLNGNNFERIPE----SIIQLSNLKSLFIR 634 (887)
Q Consensus 587 Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~ 634 (887)
+++|.++++| ..++.+++|++|++++|+++.+|. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666665543 556666666666666666665554 45666666666665
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=5.3e-14 Score=134.11 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=75.9
Q ss_pred CCCcEEecccCCCC-ccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCcc-CCccccCCCCCCEEE
Q 045202 484 SKLLHLDLVDCKTL-KSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITE-VPPSIVRLKRVRGIY 561 (887)
Q Consensus 484 ~~L~~L~L~~~~~~-~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~ 561 (887)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.++. +|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555544 35555555555555555555544433 445556666666666666664 444555566666666
Q ss_pred ccccCCCcccccccccCCCcccEEecccCCCCCccc----cccCCCCCcEEEcC
Q 045202 562 LGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE----SLGLLSSVRELHLN 611 (887)
Q Consensus 562 L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~----~~~~l~~L~~L~L~ 611 (887)
+++|.+...+.+..+..+++|+.|++++|.++++|. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665544444556677777777777777776654 56777777777765
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=4.8e-15 Score=161.61 Aligned_cols=215 Identities=12% Similarity=0.037 Sum_probs=100.1
Q ss_pred CCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccC----ccCC-ccccCCCCC
Q 045202 483 LSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAI----TEVP-PSIVRLKRV 557 (887)
Q Consensus 483 l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i----~~lp-~~l~~l~~L 557 (887)
+++|+.|+|.+ .+...-+..|.++++|+.|+++.|.+....+..|..+.++..+.+..+.. ..+. ..+..+.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77888888877 44444445677788888888877776655566677666666666554221 1221 134445555
Q ss_pred C-EEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeecc
Q 045202 558 R-GIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIR 634 (887)
Q Consensus 558 ~-~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~ 634 (887)
+ .+.+.........+........++..+.+.++-... .......+++|+.|+|++|+++.+|. .|.++++|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 5 333322110000000000112233333333321110 00001124445555555555554443 34445555555554
Q ss_pred ccccccccCCCcccccccCccce-EecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHH
Q 045202 635 YCERLQFLPKLPCNLLVGCASLH-GTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLL 704 (887)
Q Consensus 635 ~c~~l~~lp~lp~~l~~~~~~L~-~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L 704 (887)
+| +..++...|.+|++|+ .+.+++ .++.+.+..|..+..|+.+++++|.++.|.+.+|.++++|
T Consensus 259 ~n-----i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 259 HN-----LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TT-----CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred cc-----cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 43 2233344444555554 555544 4444444555555555555555555555555455444333
No 130
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.42 E-value=7.6e-13 Score=149.00 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=128.1
Q ss_pred CCCCCcccccccHHHHHHhH-hc--CC--CCeeEEEE--EcCCCcchHHHHHHHHHHHhcc-----cce-EEEccccHHH
Q 045202 16 SETNDLVGVELPMKEIESLL-RS--GS--TNVCTLGI--WGIGGIGKTTIAGAIFNKISRH-----SAG-SYFANNVREA 82 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~-----f~~-~~~~~~~~~~ 82 (887)
..++.++||+.++++|..++ .. .. ...+.+.| +|++|+||||||++++++.... +.. .+|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34578999999999999988 42 11 12345555 9999999999999999977553 222 35552 2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC-CCcccchHHHHHhhC--CceEEEEEecCCCH--------HHHHHHhcCCCCC---
Q 045202 83 EETGRLGDLRQQLLSTLLNDGNVK-SFPNIGLNFQSKRLT--RKKVLIVFYDVNHP--------RQIEFLVGRLDLF--- 148 (887)
Q Consensus 83 s~~~~~~~l~~~il~~l~~~~~~~-~~~~~~~~~~~~~l~--~kk~LiVlDdv~~~--------~~~~~l~~~~~~~--- 148 (887)
....+...+..+++.++....... .+.......+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~ 174 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSR 174 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccC
Confidence 234566788888888875432211 122233445555554 67999999999764 3344333322111
Q ss_pred C--CCcEEEEEeCChhhhhhc---------CCCceEecCCCChHHHHHHHHHh---hcCCCCCCccHHHHHHHHHHhhC-
Q 045202 149 A--SGSRIIITTRDRQLLTNC---------GVDEKYQMKELVHADALKLFSRH---AFGGDHPYESHTELTCKTIKYAR- 213 (887)
Q Consensus 149 ~--~gsrIiiTTR~~~v~~~~---------~~~~~~~v~~L~~~~a~~Lf~~~---af~~~~~~~~~~~l~~~i~~~~~- 213 (887)
+ ....||+||++..+.... .....+++++++.++++++|... ++.... --.+....++++++
T Consensus 175 ~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~---~~~~~~~~i~~~~~~ 251 (412)
T 1w5s_A 175 DGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV---WEPRHLELISDVYGE 251 (412)
T ss_dssp TSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS---CCHHHHHHHHHHHCG
T ss_pred CCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHH
Confidence 2 344588888866543211 11234999999999999999755 333211 12457788888999
Q ss_pred -----CChHHHHHHH
Q 045202 214 -----GVPLALKVWH 223 (887)
Q Consensus 214 -----GlPLal~~lg 223 (887)
|.|..+..+.
T Consensus 252 ~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 252 DKGGDGSARRAIVAL 266 (412)
T ss_dssp GGTSCCCHHHHHHHH
T ss_pred hccCCCcHHHHHHHH
Confidence 9997665554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=4.3e-13 Score=131.73 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=72.5
Q ss_pred CCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEE
Q 045202 506 KLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDL 585 (887)
Q Consensus 506 ~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 585 (887)
++++|++|++++|.+. .+|......++|+.|++++|.++.+ ..+..+++|++|++++|.+...+ +..+..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC-cchhhcCCCCCEE
Confidence 3444444444444433 2232222222555555555555544 34555555555555555544221 1223566666666
Q ss_pred ecccCCCCCccc--cccCCCCCcEEEcCCCCCcccchh----hhcCCCccEeeccccc
Q 045202 586 SLNDCCIMELPE--SLGLLSSVRELHLNGNNFERIPES----IIQLSNLKSLFIRYCE 637 (887)
Q Consensus 586 ~Ls~n~l~~lp~--~~~~l~~L~~L~L~~n~l~~lp~~----l~~l~~L~~L~L~~c~ 637 (887)
++++|.++++|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 666666666665 666777777777777777777654 6677777777777764
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.2e-12 Score=130.46 Aligned_cols=125 Identities=20% Similarity=0.232 Sum_probs=91.4
Q ss_pred cEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCC
Q 045202 442 KELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNL 521 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~ 521 (887)
++++++++ .+..+|.....+|++|+|++|.++.+|..+.++++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.
T Consensus 13 ~~l~~~~~-~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCC-CCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 45566553 45556655456777777777888888877888888888888888777666677788888888888888777
Q ss_pred CCCchhhcCCCCCceeeccCccCccCCc-cccCCCCCCEEEccccCC
Q 045202 522 QRLPEELGNLQALDSLHAVGTAITEVPP-SIVRLKRVRGIYLGRNRG 567 (887)
Q Consensus 522 ~~~p~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~n~~ 567 (887)
...|..|..+++|++|+|++|.++.+|. .+..+++|+.|++++|.+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 7767777788888888888888877766 356667777777766653
No 133
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.41 E-value=7.4e-13 Score=145.44 Aligned_cols=202 Identities=15% Similarity=0.148 Sum_probs=126.4
Q ss_pred ccCCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHH---hcCCH
Q 045202 12 DTFQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAE---ETGRL 88 (887)
Q Consensus 12 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s---~~~~~ 88 (887)
+.++...+.+|||+.++++|.+++..+ +++.|+|++|+|||||++++.++.. .+|+. +.... ...+.
T Consensus 5 ~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~ 74 (350)
T 2qen_A 5 LRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITR 74 (350)
T ss_dssp CSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCH
T ss_pred CCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCH
Confidence 345566778999999999999998753 6899999999999999999988752 55663 22221 01134
Q ss_pred HHHHHHHHHHHhc---------------CCCCC---CCcccchHHHHHhhCC-ceEEEEEecCCCHH--------H-HHH
Q 045202 89 GDLRQQLLSTLLN---------------DGNVK---SFPNIGLNFQSKRLTR-KKVLIVFYDVNHPR--------Q-IEF 140 (887)
Q Consensus 89 ~~l~~~il~~l~~---------------~~~~~---~~~~~~~~~~~~~l~~-kk~LiVlDdv~~~~--------~-~~~ 140 (887)
..+.+.+...+.. ..... ....+....+.+.... ++++||+||++... + +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 4455544443321 00000 1112222333333322 38999999997633 2 333
Q ss_pred HhcCCCCCCCCcEEEEEeCChhhhhh-----------cC-CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHH
Q 045202 141 LVGRLDLFASGSRIIITTRDRQLLTN-----------CG-VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKT 208 (887)
Q Consensus 141 l~~~~~~~~~gsrIiiTTR~~~v~~~-----------~~-~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i 208 (887)
+...... .++.++|+|++...+... .+ ....+++.+|+.+|+.+++...+-..... --.+.+.++
T Consensus 155 L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i 231 (350)
T 2qen_A 155 FAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEA 231 (350)
T ss_dssp HHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHH
T ss_pred HHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHH
Confidence 3222111 247889999987654221 11 12479999999999999997653111111 123577899
Q ss_pred HHhhCCChHHHHHHHHHH
Q 045202 209 IKYARGVPLALKVWHQAV 226 (887)
Q Consensus 209 ~~~~~GlPLal~~lg~~L 226 (887)
++.++|+|+++..++..+
T Consensus 232 ~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 999999999999888653
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=4.3e-13 Score=131.72 Aligned_cols=134 Identities=18% Similarity=0.116 Sum_probs=87.5
Q ss_pred hcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccccc-cCCCCCc
Q 045202 528 LGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESL-GLLSSVR 606 (887)
Q Consensus 528 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~-~~l~~L~ 606 (887)
+.++.+|+.|++++|.++.+|......++|+.|++++|.+... ..+..+++|+.|++++|.++.+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4567778888888888887754333334788888877776643 34677777777777777777766443 6777777
Q ss_pred EEEcCCCCCcccch--hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCC
Q 045202 607 ELHLNGNNFERIPE--SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRF 665 (887)
Q Consensus 607 ~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~ 665 (887)
+|+|++|+++.+|. .+..+++|+.|++++|+.. .+|.....+...+++|+.|+++.|.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777777777775 6777777777777777522 2222111122355666666655544
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1.2e-12 Score=130.40 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=52.1
Q ss_pred CCCcccccCCccEEEccCCCCCCCCcc--hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcC
Q 045202 453 KRLPEISSGNIETMRLDGTAPEELPSS--IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGN 530 (887)
Q Consensus 453 ~~lp~~~~~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~ 530 (887)
+.+|.....+|++|++++|.+..++.. +..+++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..|..+..
T Consensus 21 ~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 21 KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTT
T ss_pred CcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcC
Confidence 333333333444444444444444432 445555555555555544444444555555555555555444444444444
Q ss_pred CCCCceeeccCccCccC-CccccCCCCCCEEEcccc
Q 045202 531 LQALDSLHAVGTAITEV-PPSIVRLKRVRGIYLGRN 565 (887)
Q Consensus 531 l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~n 565 (887)
+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 44455555554444432 233344444444444443
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=5.1e-13 Score=133.19 Aligned_cols=127 Identities=24% Similarity=0.269 Sum_probs=86.4
Q ss_pred cEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCc-ccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 464 ETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPS-GLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
++++++++.++++|..+.. +|+.|++++|.+.+..+. .+.++++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6777888888888876543 788888888765554443 3677777777777777777666777777777777777777
Q ss_pred cCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCC-ccccccCCCCCcEEEcCCCCCc
Q 045202 543 AITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIME-LPESLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 543 ~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-lp~~~~~l~~L~~L~L~~n~l~ 616 (887)
.++.++. ..+.++++|+.|+|++|.++. .|..+..+++|++|+|++|.++
T Consensus 89 ~l~~~~~------------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISN------------------------KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECS------------------------SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCH------------------------HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7665543 224455556666666666665 3556667777777777777776
No 137
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=1.9e-12 Score=142.58 Aligned_cols=200 Identities=15% Similarity=0.170 Sum_probs=120.1
Q ss_pred ccCCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHH--hcCCHH
Q 045202 12 DTFQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAE--ETGRLG 89 (887)
Q Consensus 12 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s--~~~~~~ 89 (887)
+.++...+.+|||+.++++|.+ +.. +++.|+|++|+|||||++++.++.... .+|+.. ++.. ...+..
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~ 75 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDL-RKFEERNYISYK 75 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEG-GGGTTCSCCCHH
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEc-hhhccccCCCHH
Confidence 4455566789999999999999 763 689999999999999999999886533 456532 1210 001223
Q ss_pred HHHHHHHHHHh-------------cCCC-----C-CCC------cccchHHHHHhhCC---ceEEEEEecCCCHH-----
Q 045202 90 DLRQQLLSTLL-------------NDGN-----V-KSF------PNIGLNFQSKRLTR---KKVLIVFYDVNHPR----- 136 (887)
Q Consensus 90 ~l~~~il~~l~-------------~~~~-----~-~~~------~~~~~~~~~~~l~~---kk~LiVlDdv~~~~----- 136 (887)
.+...+...+. ..-. . ... .......+.+.+.. ++++|||||++..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 33333322221 1000 0 000 01122333333321 49999999996532
Q ss_pred H-HHHHhcCCCCCCCCcEEEEEeCChhhhhh-----------cCC-CceEecCCCChHHHHHHHHHhhcCCCCCCccHHH
Q 045202 137 Q-IEFLVGRLDLFASGSRIIITTRDRQLLTN-----------CGV-DEKYQMKELVHADALKLFSRHAFGGDHPYESHTE 203 (887)
Q Consensus 137 ~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~-----------~~~-~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~ 203 (887)
+ +..+..... ..++.++|+|+|....... .+. ...+++.+|+.+|+.+++...+-......+..
T Consensus 156 ~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-- 232 (357)
T 2fna_A 156 NLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-- 232 (357)
T ss_dssp CCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--
T ss_pred hHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--
Confidence 2 222221111 1246789999998754221 111 35799999999999999987541111111222
Q ss_pred HHHHHHHhhCCChHHHHHHHHHH
Q 045202 204 LTCKTIKYARGVPLALKVWHQAV 226 (887)
Q Consensus 204 l~~~i~~~~~GlPLal~~lg~~L 226 (887)
.++++.++|+|+++..++..+
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIY 253 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHH
T ss_pred --HHHHHHhCCCHHHHHHHHHHH
Confidence 789999999999999988654
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=3.7e-12 Score=126.93 Aligned_cols=126 Identities=23% Similarity=0.300 Sum_probs=71.8
Q ss_pred cEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCcc
Q 045202 464 ETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTA 543 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 543 (887)
+.++++++.++.+|..+. ++|+.|+|++|.+ ..+|..|.++++|++|++++|.+.+..+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456666777766665442 4566666666553 3455555555555555555555554444445555555555555555
Q ss_pred CccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEEcCCCCCc
Q 045202 544 ITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 544 i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~L~~n~l~ 616 (887)
++.+++ ..+.++++|+.|+|++|.++.+|. .+..+++|+.|+|++|.+.
T Consensus 90 l~~i~~------------------------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPP------------------------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCT------------------------TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCH------------------------HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 444432 234455566666666666666554 3556677777777777664
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=1.3e-14 Score=145.69 Aligned_cols=130 Identities=18% Similarity=0.223 Sum_probs=62.0
Q ss_pred cCCCCcEEecccCCCCccCCc------ccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCC
Q 045202 482 CLSKLLHLDLVDCKTLKSLPS------GLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLK 555 (887)
Q Consensus 482 ~l~~L~~L~L~~~~~~~~lp~------~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~ 555 (887)
....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~ 93 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVAD 93 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCC
Confidence 344455555555444444433 44445555555555444333 33 44445555555555555555544444444
Q ss_pred CCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc--cccCCCCCcEEEcCCCCCc
Q 045202 556 RVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE--SLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 556 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~--~~~~l~~L~~L~L~~n~l~ 616 (887)
+|+.|++++|.+... | .+..+++|+.|++++|.++.++. .+..+++|++|++++|.++
T Consensus 94 ~L~~L~L~~N~l~~l--~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 94 TLEELWISYNQIASL--S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HCSEEEEEEEECCCH--H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCEEECcCCcCCcC--C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 455555544444321 2 24444555555555555554332 4445555555555555544
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=8.1e-13 Score=143.91 Aligned_cols=214 Identities=11% Similarity=0.130 Sum_probs=141.4
Q ss_pred CCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC----CCCCCchhhcCCCCCc
Q 045202 461 GNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS----NLQRLPEELGNLQALD 535 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~----~~~~~p~~l~~l~~L~ 535 (887)
.+|+.|.|.. .++.++.. |.++++|+.|++.+|.+....+..|.++.++..+.+.... ....-+..|.++.+|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 4566666666 66667655 7778888888888877666666677776666665554311 1111223344555555
Q ss_pred -eeeccCccCccCCccc----cCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCccc-cccCCCCCcEEE
Q 045202 536 -SLHAVGTAITEVPPSI----VRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPE-SLGLLSSVRELH 609 (887)
Q Consensus 536 -~L~L~~n~i~~lp~~l----~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~ 609 (887)
.+.+... ..++..+ ....++..+.+.++- ...........+++|+.|+|++|+++.+|. .|.++++|+.|+
T Consensus 180 ~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 180 TTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp EEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred eeEEecCC--CcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 3433321 1222211 234556666664432 111212212347889999999999988875 688899999999
Q ss_pred cCCCCCcccch-hhhcCCCcc-EeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCccc
Q 045202 610 LNGNNFERIPE-SIIQLSNLK-SLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFK 684 (887)
Q Consensus 610 L~~n~l~~lp~-~l~~l~~L~-~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~ 684 (887)
|.+| ++.++. +|.++++|+ .|+|.+. +..++...|.+|++|+.+++++|.++.+....|..+..|+.++
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~~-----l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPAS-----VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECTT-----CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEccc-----ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 9987 888874 678899999 9999872 5556677788999999999999999999999998887776554
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=1e-14 Score=146.39 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=119.7
Q ss_pred CCCCCCcEEEeeCCCCCCCCch------hhcCCCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccC
Q 045202 505 GKLKSLGILSIDGCSNLQRLPE------ELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDG 578 (887)
Q Consensus 505 ~~L~~L~~L~L~~~~~~~~~p~------~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 578 (887)
.....++.++++.+.+.+..|. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC--SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc--cccchhhc
Confidence 3445555555655555555554 8899999999999999999988 8889999999999988877 45666777
Q ss_pred CCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccch--hhhcCCCccEeeccccccccccCC------Cccccc
Q 045202 579 LQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIPE--SIIQLSNLKSLFIRYCERLQFLPK------LPCNLL 650 (887)
Q Consensus 579 l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp~------lp~~l~ 650 (887)
+++|+.|++++|.++++| .+..+++|+.|++++|+++.+|. .+..+++|++|++++|+....+|. .+....
T Consensus 92 ~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 789999999999999887 67888999999999999997764 788899999999999975544332 111222
Q ss_pred ccCccceEecccCCCCCC
Q 045202 651 VGCASLHGTGIIRRFIPN 668 (887)
Q Consensus 651 ~~~~~L~~L~l~~N~l~~ 668 (887)
..+++|+.|+ +|.++.
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 3677888776 455543
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=8.2e-12 Score=122.65 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=69.8
Q ss_pred cEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCcc
Q 045202 464 ETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTA 543 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 543 (887)
+.++++++.+..+|..+. ++|+.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 455566666666664432 466666666665444333444555555555555555443333344455555555555554
Q ss_pred CccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcccc-ccCCCCCcEEEcCCCCCc
Q 045202 544 ITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPES-LGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 544 i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~L~~n~l~ 616 (887)
++.+|. ..+..+++|+.|++++|.++.+|.. +..+++|++|+|++|.+.
T Consensus 88 l~~~~~------------------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPN------------------------GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCT------------------------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCH------------------------HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444332 2244555666666666666665543 456677777777777666
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=1e-10 Score=130.07 Aligned_cols=195 Identities=14% Similarity=0.105 Sum_probs=129.3
Q ss_pred CCCcccccccHHHHHHhHhc--CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--------cceEEEccccHHHHhcC-
Q 045202 18 TNDLVGVELPMKEIESLLRS--GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--------SAGSYFANNVREAEETG- 86 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~s~~~- 86 (887)
++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++++... ....+|+. .....
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCC
Confidence 37899999999999988764 23345689999999999999999999977443 22334552 23334
Q ss_pred CHHHHHHHHHHHHhcCCCCC--CCcccchHHHHHhhCCceEEEEEecCCCHHH-------HHHHhcCCCCCCCCcEEEEE
Q 045202 87 RLGDLRQQLLSTLLNDGNVK--SFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQ-------IEFLVGRLDLFASGSRIIIT 157 (887)
Q Consensus 87 ~~~~l~~~il~~l~~~~~~~--~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~-------~~~l~~~~~~~~~gsrIiiT 157 (887)
+...+..+++.++.+..... .........+.+.+..++.+|||||++.... +..+... . .+.+||+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEE
Confidence 66677888888875432222 2223445666677777666999999976432 3333332 2 77889999
Q ss_pred eCChhhhhhc------CCCceEecCCCChHHHHHHHHHhh---cCCCCCCccHHHHHHHHHHhhC---CChH-HHHHHH
Q 045202 158 TRDRQLLTNC------GVDEKYQMKELVHADALKLFSRHA---FGGDHPYESHTELTCKTIKYAR---GVPL-ALKVWH 223 (887)
Q Consensus 158 TR~~~v~~~~------~~~~~~~v~~L~~~~a~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~---GlPL-al~~lg 223 (887)
|+........ .....+++++++.++..+++...+ |......+ +..+.++++++ |.|. |+..+-
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHH
Confidence 9876321111 122489999999999999999874 33222222 44566777777 8887 444433
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.3e-11 Score=119.44 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=98.9
Q ss_pred ccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC
Q 045202 441 LKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS 519 (887)
Q Consensus 441 L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~ 519 (887)
.+.++++++ .+..+|....++|++|++++|.+..+|.. +..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 355666654 45556654557788888888888888775 6889999999999988766666667899999999999998
Q ss_pred CCCCCchhhcCCCCCceeeccCccCccCCcc-ccCCCCCCEEEccccCCC
Q 045202 520 NLQRLPEELGNLQALDSLHAVGTAITEVPPS-IVRLKRVRGIYLGRNRGL 568 (887)
Q Consensus 520 ~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~L~~n~~~ 568 (887)
+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 8877777788999999999999999988774 466777777777777643
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=1.5e-10 Score=128.77 Aligned_cols=212 Identities=8% Similarity=0.039 Sum_probs=117.6
Q ss_pred CCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeec
Q 045202 461 GNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHA 539 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 539 (887)
.+|+.+.+.. .+..++.. |.++++|+.+++.+|.+...-...|. ..+|+.+.+.. ++...-...|.++++|+.+++
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEec
Confidence 4455555553 44445433 55666666666665543333233333 45666666653 233333345666666666666
Q ss_pred cCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCC-----Ccc-ccccCCCCCcEEEcCC
Q 045202 540 VGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIM-----ELP-ESLGLLSSVRELHLNG 612 (887)
Q Consensus 540 ~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~lp-~~~~~l~~L~~L~L~~ 612 (887)
..+ ++.++. .|.+ .+|+.+.+.. .+.... ...|.++++|+.+++.++.+. .++ ..|.++++|+.+.|.
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~-~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIA-SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEET-TCCEEC-TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred CCC-ccCcccccccc-CCccEEEeCC-CccEEC-hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 553 444443 3333 5666666632 222221 234566667777776666554 233 456677777777777
Q ss_pred CCCcccc-hhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhc-ccCcccCC
Q 045202 613 NNFERIP-ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLY-LSDNFKLD 686 (887)
Q Consensus 613 n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~-~l~~l~L~ 686 (887)
+.++.++ .+|.++++|+.|.|..+ +..++...+.+| +|+.+.+.+|.+..+....|..+. .+..+.+.
T Consensus 309 ~~i~~I~~~aF~~c~~L~~l~lp~~-----l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 309 ESIRILGQGLLGGNRKVTQLTIPAN-----VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp TTCCEECTTTTTTCCSCCEEEECTT-----CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred CceEEEhhhhhcCCCCccEEEECcc-----ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 3466665 35666777777777554 444555666677 777777777777666666665542 33344443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=5.8e-11 Score=132.22 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=116.6
Q ss_pred CCccEEEccCCCCCCCCcc-hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeec
Q 045202 461 GNIETMRLDGTAPEELPSS-IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHA 539 (887)
Q Consensus 461 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L 539 (887)
.+|+.+.+..+ ++.++.. |.+ .+|+.+.+.+ .+...-+..|.++++|+.++++.|.+...-...|. ..+|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 34555555443 4455443 444 3566666664 33333334566666666666666544433333343 456666666
Q ss_pred cCccCccCCc-cccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCCCCcEEEcCCCCCc-
Q 045202 540 VGTAITEVPP-SIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLSSVRELHLNGNNFE- 616 (887)
Q Consensus 540 ~~n~i~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~L~~n~l~- 616 (887)
..+ ++.++. .|.++++|+.+.+..+ +.... ...|.+ .+|+.+.+ .++++.++ ..|..+++|+.+.+.+|.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~-~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG-QEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC-TTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcc-cccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 533 554443 4556666666666443 22211 122333 55666666 33455543 35556666666666665443
Q ss_pred ----ccc-hhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCC
Q 045202 617 ----RIP-ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLG 691 (887)
Q Consensus 617 ----~lp-~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~ 691 (887)
.++ ..|.++++|+.+.|.++ +..++...+.+|++|+.+.+.. .++.+....|..+ .|+.+.+++|.+.
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~~-----i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPES-----IRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCTT-----CCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred CcccEECHHHhhCCccCCeEEeCCc-----eEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 343 34556666666666532 3344455555666666666633 3555555666655 6666666666555
Q ss_pred cchhHHH
Q 045202 692 GIFKGAL 698 (887)
Q Consensus 692 ~i~~~~~ 698 (887)
.+.+.+|
T Consensus 359 ~l~~~~F 365 (401)
T 4fdw_A 359 QVFEKVW 365 (401)
T ss_dssp BCCCSSC
T ss_pred ccccccc
Confidence 5444333
No 147
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.23 E-value=1.3e-10 Score=129.32 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=124.7
Q ss_pred CCCCcccccccHHHHHHhHhcC--CCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-----c-eEEEccccHHHHhcCCH
Q 045202 17 ETNDLVGVELPMKEIESLLRSG--STNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-----A-GSYFANNVREAEETGRL 88 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-----~-~~~~~~~~~~~s~~~~~ 88 (887)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ . ..+|+. .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 4478999999999999998542 34456799999999999999999999764432 2 234442 2333455
Q ss_pred HHHHHHHHHHHhcCCCCC-CCcccchHHHHHhh--CCceEEEEEecCCCHH----H---HHHHhcCCCCC--CCCcEEEE
Q 045202 89 GDLRQQLLSTLLNDGNVK-SFPNIGLNFQSKRL--TRKKVLIVFYDVNHPR----Q---IEFLVGRLDLF--ASGSRIII 156 (887)
Q Consensus 89 ~~l~~~il~~l~~~~~~~-~~~~~~~~~~~~~l--~~kk~LiVlDdv~~~~----~---~~~l~~~~~~~--~~gsrIii 156 (887)
..+...++.++....... .........+.+.+ .+++.+|||||++... . +..+....... ..+..+|.
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 677788888775432211 11223344455555 4568999999998643 2 22223222111 45668888
Q ss_pred EeCChhhhhhc------CC-CceEecCCCChHHHHHHHHHhh---cCCCCCCccHHHHHHHHHHhhC---CChH-HHHHH
Q 045202 157 TTRDRQLLTNC------GV-DEKYQMKELVHADALKLFSRHA---FGGDHPYESHTELTCKTIKYAR---GVPL-ALKVW 222 (887)
Q Consensus 157 TTR~~~v~~~~------~~-~~~~~v~~L~~~~a~~Lf~~~a---f~~~~~~~~~~~l~~~i~~~~~---GlPL-al~~l 222 (887)
||+........ .. ...+.+++++.++..+++...+ +......+ +..+.++++++ |.|- |+.++
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 88776321111 11 2479999999999999998874 33222222 34566777777 9994 44443
Q ss_pred H
Q 045202 223 H 223 (887)
Q Consensus 223 g 223 (887)
.
T Consensus 250 ~ 250 (387)
T 2v1u_A 250 R 250 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=4.6e-11 Score=132.95 Aligned_cols=203 Identities=15% Similarity=0.072 Sum_probs=125.0
Q ss_pred CCCCCcccccccHHHHHHhHhcC--CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc---eEEEccccHHHHhcCCHHH
Q 045202 16 SETNDLVGVELPMKEIESLLRSG--STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA---GSYFANNVREAEETGRLGD 90 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~~~~~~s~~~~~~~ 90 (887)
..++.++||+.+++++.+++... ....+.+.|+|++|+||||||+++++.....+. ..+|+. .........
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHH
Confidence 34578999999999999988742 334568999999999999999999998766542 344552 223335556
Q ss_pred HHHHHHHHHhcCCCCC-CCcccchHHHHHhhC--CceEEEEEecCCCHH------HHHHHhcCCCC-CCCCcEEEEEeCC
Q 045202 91 LRQQLLSTLLNDGNVK-SFPNIGLNFQSKRLT--RKKVLIVFYDVNHPR------QIEFLVGRLDL-FASGSRIIITTRD 160 (887)
Q Consensus 91 l~~~il~~l~~~~~~~-~~~~~~~~~~~~~l~--~kk~LiVlDdv~~~~------~~~~l~~~~~~-~~~gsrIiiTTR~ 160 (887)
+...++.++....... .........+.+.+. +++.+||||+++... .+..+...... ...+..+|+||++
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 6666665553321111 112222344444443 458999999996532 23333322211 2345677888887
Q ss_pred hhhhhhcC-------CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhC---CChHHHHHH
Q 045202 161 RQLLTNCG-------VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYAR---GVPLALKVW 222 (887)
Q Consensus 161 ~~v~~~~~-------~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~---GlPLal~~l 222 (887)
........ ....+.+++++.++..+++...+-....+..-..+..+.++++++ |.|..+..+
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 65433221 125899999999999999987642111111222456667777777 999854433
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=4.5e-11 Score=123.67 Aligned_cols=198 Identities=13% Similarity=0.076 Sum_probs=120.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...++++|++..++++..++..+. ..+.+.|+|++|+||||+|++++++....+....+- ...... ...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~ 88 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--------CGVCDN-CRE 88 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--------CSCSHH-HHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CcccHH-HHH
Confidence 4445689999999999999987543 235789999999999999999998765433211000 000000 000
Q ss_pred HHHH----HhcCCCCCCCcccchHHHHHh-----hCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 95 LLST----LLNDGNVKSFPNIGLNFQSKR-----LTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 95 il~~----l~~~~~~~~~~~~~~~~~~~~-----l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
+... +..-.............+.+. ..+++.+||+||++. ...++.+...+.....+.++|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000 000000000000001111111 235679999999965 45566666555444567889999876543
Q ss_pred hh-h-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHH
Q 045202 164 LT-N-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQ 224 (887)
Q Consensus 164 ~~-~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~ 224 (887)
.. . ......+++++++.++..+++...+...... --.+..+.++++++|.|..+..+..
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 1 1224689999999999999998877543222 1245678899999999999887663
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.6e-10 Score=112.40 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=69.0
Q ss_pred ccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 463 IETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 463 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
.+.++++++.++.+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4566777777777776553 67777777777766666666777777777777777666555555677777777777777
Q ss_pred cCccCCc-cccCCCCCCEEEccccCC
Q 045202 543 AITEVPP-SIVRLKRVRGIYLGRNRG 567 (887)
Q Consensus 543 ~i~~lp~-~l~~l~~L~~L~L~~n~~ 567 (887)
.++.+|. .+..+++|+.|+|++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 7776665 355566666666655543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.6e-10 Score=112.84 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=59.4
Q ss_pred cEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCcc
Q 045202 464 ETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTA 543 (887)
Q Consensus 464 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~ 543 (887)
+.++++++.+..+|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455556666666666543 566666666666555556566666666666666665554444445666666666666666
Q ss_pred CccCCcc-ccCCCCCCEEEccccC
Q 045202 544 ITEVPPS-IVRLKRVRGIYLGRNR 566 (887)
Q Consensus 544 i~~lp~~-l~~l~~L~~L~L~~n~ 566 (887)
++.+|.. +..+++|+.|+|++|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 6655543 4555555555555544
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.6e-10 Score=111.00 Aligned_cols=109 Identities=15% Similarity=0.170 Sum_probs=87.3
Q ss_pred cccEEecccCCCCCccccccCCCCCcEEEcCCCCCccc-chhhhcCCCccEeeccccccccccCCCcccccccCccceEe
Q 045202 581 NLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERI-PESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGT 659 (887)
Q Consensus 581 ~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L 659 (887)
..+.|++++|.++++|..+ .++|+.|+|++|+|+.+ |..+..+++|++|+|++|. +..+|+..+.++++|+.|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~----l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ----LTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC----CCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC----cCccChhhccCCCCCCEE
Confidence 4577888888888888765 37888888888888877 4567888888888888886 445566666678888888
Q ss_pred cccCCCCCCCCcchhhhhcccCcccCCCCCCCcchh
Q 045202 660 GIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFK 695 (887)
Q Consensus 660 ~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~ 695 (887)
++++|.|+++.+..|..+..|+.++|++|.+....+
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888888888888888888888899999998876643
No 153
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.10 E-value=1e-09 Score=122.21 Aligned_cols=203 Identities=11% Similarity=0.048 Sum_probs=129.0
Q ss_pred CCCCcccccccHHHHHHhHhc----CCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-ceEEEccccHHHHhcCCHHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRS----GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-AGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~s~~~~~~~l 91 (887)
.++.++||+.+++++..++.. .....+.+.|+|++|+||||+|+++++...... ...+++. .+.......+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHH
Confidence 347899999999999998875 222334899999999999999999999876542 2344552 2333455677
Q ss_pred HHHHHHHHhcCCCCC-CCcccchHHHHHhh--CCceEEEEEecCCCH--HHHHHHhcCCCCCC----CCcEEEEEeCChh
Q 045202 92 RQQLLSTLLNDGNVK-SFPNIGLNFQSKRL--TRKKVLIVFYDVNHP--RQIEFLVGRLDLFA----SGSRIIITTRDRQ 162 (887)
Q Consensus 92 ~~~il~~l~~~~~~~-~~~~~~~~~~~~~l--~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~----~gsrIiiTTR~~~ 162 (887)
...++..+....... .........+.+.+ .+++.+|||||++.. +.+..+...+.... .+..||++|++..
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 777777664322111 12222233344443 366899999999763 44555554443221 4678888888765
Q ss_pred hhhhcC-------CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhh---------CCChHHHHHHH
Q 045202 163 LLTNCG-------VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYA---------RGVPLALKVWH 223 (887)
Q Consensus 163 v~~~~~-------~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~---------~GlPLal~~lg 223 (887)
+..... ....+.+++++.++..+++...+-....+..--.+..+.+++++ .|.|-.+..+.
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 433221 12479999999999999998765220001112245677888888 78876554443
No 154
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.09 E-value=5.9e-10 Score=113.43 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=117.9
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~ 93 (887)
.|....+++|++..++++..++.... ...+.|+|.+|+||||+|+++++++........++.. ..+...+...+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM--NASDERGIDVVRH 87 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE--ETTCTTCHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe--ccccccChHHHHH
Confidence 34455789999999999999998543 2338999999999999999999876433221112110 1112222222222
Q ss_pred HHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhh-hh-cCC
Q 045202 94 QLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQLL-TN-CGV 169 (887)
Q Consensus 94 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~~~ 169 (887)
. +....... ....+++.+||+||++.. ..++.+...+.....+.++|+||+..... .. ...
T Consensus 88 ~-~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 88 K-IKEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp H-HHHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred H-HHHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 2 11111110 011357889999999753 34455544444445678899998865421 11 122
Q ss_pred CceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 170 DEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 170 ~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
...+++++++.++..+++...+...... --.+..+.+++.++|.|..+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3489999999999999998876432221 123567788899999998765444
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=6.5e-10 Score=108.56 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=86.4
Q ss_pred cEEEeecCCCCCCCcccccCCccEEEccCCCCCCCC-cchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCC
Q 045202 442 KELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELP-SSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSN 520 (887)
Q Consensus 442 ~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~ 520 (887)
+.+++++| .+..+|.....+|++|+|++|.+..++ ..+.++++|+.|+|++|.+.+..+..|.++++|++|+|++|.+
T Consensus 15 ~~l~~~~n-~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCC-CCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 56666664 456666655578888888888888885 4588999999999999987665555678999999999999987
Q ss_pred CCCCchhhcCCCCCceeeccCccCccCCccc
Q 045202 521 LQRLPEELGNLQALDSLHAVGTAITEVPPSI 551 (887)
Q Consensus 521 ~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l 551 (887)
.+..+..+..+++|++|++++|.+...+..+
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 7666666999999999999999998776543
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.05 E-value=1.1e-11 Score=136.58 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCCcEEecccCCCCccCCcc----cC-CCCCCcEEEeeCCCCCCCCchh-hcCCCCCceeeccCccCccCC-----ccc
Q 045202 483 LSKLLHLDLVDCKTLKSLPSG----LG-KLKSLGILSIDGCSNLQRLPEE-LGNLQALDSLHAVGTAITEVP-----PSI 551 (887)
Q Consensus 483 l~~L~~L~L~~~~~~~~lp~~----l~-~L~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~L~~n~i~~lp-----~~l 551 (887)
+++|+.|+|++|.+...-... +. +.++|++|+|++|.+....... ...+++|+.|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456778888877754432222 22 2257777777777654322222 233456777777777665321 112
Q ss_pred -cCCCCCCEEEccccCCCcc---cccccccCCCcccEEecccCCCCC-----ccccccCCCCCcEEEcCCCCCc-----c
Q 045202 552 -VRLKRVRGIYLGRNRGLSL---PITFSVDGLQNLLDLSLNDCCIME-----LPESLGLLSSVRELHLNGNNFE-----R 617 (887)
Q Consensus 552 -~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~ 617 (887)
...++|+.|+|++|.+... .++..+...++|++|+|++|.+++ ++..+...++|++|+|++|.|+ .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2345666666666655432 122333455666666666666653 3444555556666666666665 2
Q ss_pred cchhhhcCCCccEeeccccc
Q 045202 618 IPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 618 lp~~l~~l~~L~~L~L~~c~ 637 (887)
++..+...++|++|+|++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 33344455666666666664
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=1.5e-09 Score=121.05 Aligned_cols=217 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred hhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCE
Q 045202 480 IECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRG 559 (887)
Q Consensus 480 i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 559 (887)
|.++.+|+.+.+.++ ....-...|.++++|+.+.+..+ ....-...+.++..|+.+.+..+.. .+........+|+.
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKN 234 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCE
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce-EeehhhcccCCCce
Confidence 556666666666542 22222334556666666666543 2222234455666666665544322 22222333445555
Q ss_pred EEccccCCCcccccccccCCCcccEEecccCCCCCccccccCCCCCcEEEcCCCCCcccc-hhhhcCCCccEeecccccc
Q 045202 560 IYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELPESLGLLSSVRELHLNGNNFERIP-ESIIQLSNLKSLFIRYCER 638 (887)
Q Consensus 560 L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~ 638 (887)
+.+..+. ... -...+.++..|+.+.+..+...--...+..++.|+.+.+..+. ++ ..+..+.+|+.+.+.++
T Consensus 235 i~ip~~~-~~i-~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-- 307 (394)
T 4fs7_A 235 IIIPDSF-TEL-GKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-- 307 (394)
T ss_dssp EEECTTC-CEE-CSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT--
T ss_pred EEECCCc-eec-ccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccccccccccccccc--
Confidence 5553221 111 1122445556666666544322122344555556555554432 22 23455566666665443
Q ss_pred ccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHHhhhh
Q 045202 639 LQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATARLKE 711 (887)
Q Consensus 639 l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l~l~~ 711 (887)
+..++...+.+|.+|+.+.++. .++.+....|..+..|+.+.+..| ++.|...+|.++.+|+.+.+..
T Consensus 308 ---i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 308 ---VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ---CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ---cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 3333444455666666666643 355555566666666666666544 5566666666665555555433
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.96 E-value=4.3e-09 Score=117.39 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=36.7
Q ss_pred ccCCCCCcEEEcCCCCCcccc-hhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhh
Q 045202 599 LGLLSSVRELHLNGNNFERIP-ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDL 677 (887)
Q Consensus 599 ~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l 677 (887)
+..+.+|+.+.+..+ ++.++ .++.++.+|+.++|.++ +..++...+.+|.+|+.+.++.| ++.+....|..+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-----v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-----VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-----CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-----ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 334455555555432 44443 23444555555555332 22333344445555555555433 444444555554
Q ss_pred cccCcccC
Q 045202 678 YLSDNFKL 685 (887)
Q Consensus 678 ~~l~~l~L 685 (887)
.+|+.+++
T Consensus 366 ~~L~~i~l 373 (394)
T 4fs7_A 366 INLKKVEL 373 (394)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 44444444
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.93 E-value=8.9e-11 Score=129.42 Aligned_cols=169 Identities=17% Similarity=0.102 Sum_probs=103.6
Q ss_pred CCCCcEEEeeCCCCCCCCchhh----c-CCCCCceeeccCccCcc--CCccccCCCCCCEEEccccCCCcccccc---cc
Q 045202 507 LKSLGILSIDGCSNLQRLPEEL----G-NLQALDSLHAVGTAITE--VPPSIVRLKRVRGIYLGRNRGLSLPITF---SV 576 (887)
Q Consensus 507 L~~L~~L~L~~~~~~~~~p~~l----~-~l~~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~n~~~~~~~~~---~~ 576 (887)
+++|+.|++++|.+.......+ . ..++|++|+|++|.++. +..-...+++|+.|+|++|.+....... .+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678888888887654333333 2 23678888888888762 2222234567788888888765432211 12
Q ss_pred -cCCCcccEEecccCCCCC-----ccccccCCCCCcEEEcCCCCCc-----ccchhhhcCCCccEeeccccccccccC-C
Q 045202 577 -DGLQNLLDLSLNDCCIME-----LPESLGLLSSVRELHLNGNNFE-----RIPESIIQLSNLKSLFIRYCERLQFLP-K 644 (887)
Q Consensus 577 -~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~c~~l~~lp-~ 644 (887)
...++|+.|+|++|.+++ ++..+..+++|++|+|++|.|+ .++..+...++|++|+|++|.....-. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245678888888888764 4555667778888888888776 234566677788888888875221100 1
Q ss_pred CcccccccCccceEecccCCCCCCCCcchhhh
Q 045202 645 LPCNLLVGCASLHGTGIIRRFIPNSSESDFLD 676 (887)
Q Consensus 645 lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~ 676 (887)
++..+ ..+++|++|++++|.|+......+..
T Consensus 231 l~~~L-~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 231 LARAA-REHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHH-HHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHH-HhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 11111 25577778888777776654444433
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=7e-09 Score=112.20 Aligned_cols=186 Identities=16% Similarity=0.189 Sum_probs=115.7
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-cc-eEEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-SA-GSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~-~~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...++++|++..++++..++..+.. ..+.++|++|+||||+|+++++.+... +. ....+. .+...+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i- 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV- 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-
Confidence 34456899999999999999985432 238999999999999999999976432 21 122331 1112222222
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhh-CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhh-hh-c
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRL-TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQLL-TN-C 167 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~-~ 167 (887)
++++..+.... ..+ .+++.+||+||++.. ..++.+...+.....++++|+||+...-. .. .
T Consensus 90 ~~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 90 RNQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HTHHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 22222222100 012 356889999999753 33444444333344678888888764321 11 1
Q ss_pred CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH-HHHHH
Q 045202 168 GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA-LKVWH 223 (887)
Q Consensus 168 ~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa-l~~lg 223 (887)
.....+++++++.++..+++...+...... --.+....++++++|.|.. +..+.
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 234589999999999999998876322211 1235678899999999954 44443
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=5.2e-09 Score=114.54 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=77.9
Q ss_pred EEEccCC-CCCCCCcchhcCCCCcEEeccc-CCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCc
Q 045202 465 TMRLDGT-APEELPSSIECLSKLLHLDLVD-CKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGT 542 (887)
Q Consensus 465 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n 542 (887)
.++.+++ .+..+|. +..+++|+.|+|++ |.+.+..|..|.+|++|++|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3456666 7778888 88888888888886 7766666677888888888888888877777778888888888888888
Q ss_pred cCccCCccccCCCCCCEEEccccCCC
Q 045202 543 AITEVPPSIVRLKRVRGIYLGRNRGL 568 (887)
Q Consensus 543 ~i~~lp~~l~~l~~L~~L~L~~n~~~ 568 (887)
.++.+|..+.....|+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88888775443333777777777654
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=2.1e-08 Score=108.52 Aligned_cols=187 Identities=17% Similarity=0.130 Sum_probs=115.4
Q ss_pred CCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc-ce-EEEccccHHHHhcCCHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS-AG-SYFANNVREAEETGRLGDL 91 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f-~~-~~~~~~~~~~s~~~~~~~l 91 (887)
.|...++++|++..++++..++..+. ...+.++|++|+||||+|+++++.+.... .. ...+. . +...+...+
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~~~ 93 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-A---SDERGINVI 93 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-T---TCHHHHHTT
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-c---cccCchHHH
Confidence 34456789999999999999998653 33489999999999999999999764322 11 12221 1 000001111
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhhh-hhc-
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQLL-TNC- 167 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~- 167 (887)
. +.+.+..... ....+++.+||+||++.. +.++.+...+.....+.++|+||....-. ...
T Consensus 94 ~-~~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 94 R-EKVKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp H-HHHHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred H-HHHHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 1 1111111000 011256789999999753 44555555444445678899988765321 111
Q ss_pred CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 168 GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 168 ~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
.....+++.+++.++..+++...+...... --.+..+.+++.++|.|..+..+.
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 122478999999999999998876433221 124567788899999998765443
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=9.4e-09 Score=112.47 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=62.7
Q ss_pred EEcccc-CCCcccccccccCCCcccEEeccc-CCCCCcc-ccccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeeccc
Q 045202 560 IYLGRN-RGLSLPITFSVDGLQNLLDLSLND-CCIMELP-ESLGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIRY 635 (887)
Q Consensus 560 L~L~~n-~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~lp-~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~ 635 (887)
++.+++ .+.. +|. +..+++|+.|+|++ |.++.+| ..|+.+++|+.|+|++|+|+.+|. .|.++++|+.|+|++
T Consensus 13 v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 5553 455 66677777777775 7777655 456677777777777777775543 566777777777777
Q ss_pred cccccccCCCcccccccCccceEecccCCCCCC
Q 045202 636 CERLQFLPKLPCNLLVGCASLHGTGIIRRFIPN 668 (887)
Q Consensus 636 c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~ 668 (887)
|+ |..+|+..+..++ |+.|++.+|.+..
T Consensus 90 N~----l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NA----LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SC----CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred Cc----cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 75 3334444433333 6677777666664
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.69 E-value=4.6e-07 Score=100.80 Aligned_cols=77 Identities=9% Similarity=0.179 Sum_probs=42.4
Q ss_pred CccEEEcCCCCCccch-hhhcCCccCceeecCcCc--CCCCCCCCcccccCCCCcEEEecCCCCCCCCCCc-c-CCCCcc
Q 045202 368 KLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFN--FFSKTPTPSLTQHLNKLAILNLSGRKNLQSLPAR-I-HLGLLK 442 (887)
Q Consensus 368 ~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~--~l~~~~~~~~~~~l~~L~~L~L~~~~~~~~lp~~-~-~l~~L~ 442 (887)
.|+.+.++.+ ++.+. ..|.++.+|+.+.+..+. .+..+ ....|..+.+|+.+.+..+ ...++.. + ++.+|+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEe-chhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 4777777653 66664 567778888888776542 22222 2344555666665554432 2222222 2 366666
Q ss_pred EEEeec
Q 045202 443 ELNLSG 448 (887)
Q Consensus 443 ~L~L~~ 448 (887)
.+.+..
T Consensus 141 ~i~lp~ 146 (394)
T 4gt6_A 141 TVTIPE 146 (394)
T ss_dssp EEECCT
T ss_pred cccccc
Confidence 666643
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.4e-08 Score=110.80 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=75.0
Q ss_pred chhcCCCCcEEecccCCC---------CccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCcc-CC
Q 045202 479 SIECLSKLLHLDLVDCKT---------LKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITE-VP 548 (887)
Q Consensus 479 ~i~~l~~L~~L~L~~~~~---------~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~-lp 548 (887)
++..+++|+.|.+..... .+.++..+..+|+|+.|.|++|... .++. +. +++|+.|++..+.+.. ..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence 344556666666544221 1123333445666777777665322 2222 22 5666666666655541 11
Q ss_pred cccc--CCCCCCEEEccc--cC-CCcc---cccccc--cCCCcccEEecccCCCCC-ccccc---cCCCCCcEEEcCCCC
Q 045202 549 PSIV--RLKRVRGIYLGR--NR-GLSL---PITFSV--DGLQNLLDLSLNDCCIME-LPESL---GLLSSVRELHLNGNN 614 (887)
Q Consensus 549 ~~l~--~l~~L~~L~L~~--n~-~~~~---~~~~~~--~~l~~L~~L~Ls~n~l~~-lp~~~---~~l~~L~~L~L~~n~ 614 (887)
..+. .+++|+.|+|+. |. .... .+...+ ..+++|+.|+|++|.+.+ .+..+ ..+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 1222 566666666632 11 0000 001111 235666666666666553 11111 245666666666666
Q ss_pred Ccc-----cchhhhcCCCccEeeccccc
Q 045202 615 FER-----IPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 615 l~~-----lp~~l~~l~~L~~L~L~~c~ 637 (887)
++. ++..+..+++|+.|+|++|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 652 33444455666666666653
No 166
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.66 E-value=1.3e-07 Score=101.83 Aligned_cols=180 Identities=11% Similarity=0.041 Sum_probs=114.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc-ccce-EEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR-HSAG-SYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~f~~-~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...++++|++..++++.+++..+. ...+.++|++|+||||+|+++.+.+.. .+.. ...+. . +...+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~~~~~--- 83 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-A---SDERGID--- 83 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-T---TSTTCTT---
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-C---ccccChH---
Confidence 4455789999999999999887543 233899999999999999999987632 2111 11111 0 1100100
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHh-----h-CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChhh-
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKR-----L-TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQL- 163 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~-----l-~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v- 163 (887)
.....+.+. + .+++.+||+|+++.. +..+.+...+.....+.++|+||....-
T Consensus 84 ------------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 84 ------------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (319)
T ss_dssp ------------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGS
T ss_pred ------------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 001111111 1 256789999999753 4456666666655677888888876542
Q ss_pred hhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 164 LTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 164 ~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
... ......+++.+++.++..+++...+-..... --.+....+++.++|.+..+....
T Consensus 146 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 146 IEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred chHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 1233589999999999999988776433222 124566788899999997665433
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.62 E-value=2.4e-07 Score=102.31 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=115.0
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...++++|++..++.+...+..+. -.+.+.|+|++|+||||+|+++.+.+....... .. ..+...-...
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~--------~~~~~~~~~~ 81 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-AT--------PCGVCDNCRE 81 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SS--------CCSSSHHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC--------CCcccHHHHH
Confidence 3445679999999999999987543 234788999999999999999998764322100 00 0000000011
Q ss_pred HHHH----Hhc-CCCCCCCcccchHHHHHhh-----CCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 045202 95 LLST----LLN-DGNVKSFPNIGLNFQSKRL-----TRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDRQ 162 (887)
Q Consensus 95 il~~----l~~-~~~~~~~~~~~~~~~~~~l-----~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 162 (887)
+... +.. ........ .....+.+.+ .+++.+||+||++. ...++.+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCS-SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred HhccCCCceEEecccccCCH-HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 1100 000 00000011 1122333332 35678999999975 3445555554444455677888776543
Q ss_pred h-hhh-cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 163 L-LTN-CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 163 v-~~~-~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
- ... ......+++.+++.++..+++...+-..... --.+....++++++|.|..+..+.
T Consensus 161 ~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 161 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2 111 1234689999999999999988765221111 123557788999999998876554
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=5.1e-08 Score=106.41 Aligned_cols=183 Identities=11% Similarity=0.150 Sum_probs=112.0
Q ss_pred CCCccEEEeecCCCCCCCcccccCCccEEEccCCCCCCCCcchhcCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeC
Q 045202 438 LGLLKELNLSGCSKLKRLPEISSGNIETMRLDGTAPEELPSSIECLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDG 517 (887)
Q Consensus 438 l~~L~~L~L~~~~~l~~lp~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~ 517 (887)
+++|+.|.+.+... .. ..++......++..+..+++|+.|+|++|... .++. + .+++|++|++..
T Consensus 138 l~~L~~L~l~~~~~-e~-----------~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~ 202 (362)
T 2ra8_A 138 FAHFEGLFWGDIDF-EE-----------QEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIIS 202 (362)
T ss_dssp HTTCSEEEECCCCT-TT-----------CCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEEC
T ss_pred cchhhheeecCcch-hh-----------cccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEec
Confidence 78899998866321 00 00111111234455677788888888876322 3343 3 378888888887
Q ss_pred CCCCCCCchhhc--CCCCCceeeccC--cc------CccCCccc--cCCCCCCEEEccccCCCccccccc--ccCCCccc
Q 045202 518 CSNLQRLPEELG--NLQALDSLHAVG--TA------ITEVPPSI--VRLKRVRGIYLGRNRGLSLPITFS--VDGLQNLL 583 (887)
Q Consensus 518 ~~~~~~~p~~l~--~l~~L~~L~L~~--n~------i~~lp~~l--~~l~~L~~L~L~~n~~~~~~~~~~--~~~l~~L~ 583 (887)
|.+.......+. .+++|+.|+|+. +. +..+...+ ..+++|+.|+|.+|.+........ ...+++|+
T Consensus 203 ~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~ 282 (362)
T 2ra8_A 203 GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282 (362)
T ss_dssp SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS
T ss_pred CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC
Confidence 765433333343 678888888753 11 11222222 357899999998877653111111 13578999
Q ss_pred EEecccCCCCC-----ccccccCCCCCcEEEcCCCCCc-ccchhhhc-CCCccEeeccccc
Q 045202 584 DLSLNDCCIME-----LPESLGLLSSVRELHLNGNNFE-RIPESIIQ-LSNLKSLFIRYCE 637 (887)
Q Consensus 584 ~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~c~ 637 (887)
.|+|+.|.+.+ ++..+..+++|+.|+|++|.++ ..-..+.. + ...+++++++
T Consensus 283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99999999886 4555567899999999999887 22223332 2 3567777764
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.57 E-value=5.2e-07 Score=88.93 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=43.1
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+...+.++||+..++++.+++... ..+.+.|+|++|+||||+|+++++.+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345678999999999999998753 3456889999999999999999987643
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=3.1e-06 Score=93.52 Aligned_cols=140 Identities=14% Similarity=0.195 Sum_probs=68.6
Q ss_pred hhcCCCCCceeeccCccCccCC-ccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCCC
Q 045202 527 ELGNLQALDSLHAVGTAITEVP-PSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLSS 604 (887)
Q Consensus 527 ~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~ 604 (887)
.+....+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +.... ...+.++.+|+.+.+..+ +..++ ..+..+++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~-~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG-SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC-TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC-ccccceeehhcccccccc-ceeccccccccccc
Confidence 3444455555555433 22222 24455555665555332 12111 223445556666655432 34433 24555666
Q ss_pred CcEEEcCCCCCcccc-hhhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhh
Q 045202 605 VRELHLNGNNFERIP-ESIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLD 676 (887)
Q Consensus 605 L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~ 676 (887)
|+.+.+.++.++.++ ..|.++.+|+.+.|..+ +..++...|.+|.+|+++.+..+ ++.+....|..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-----l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-----LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-----CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-----ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 666666666666554 34556666666666432 33334445556666666666433 44444444443
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.56 E-value=3.3e-07 Score=97.01 Aligned_cols=182 Identities=17% Similarity=0.139 Sum_probs=106.4
Q ss_pred CCCCCCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA 82 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 82 (887)
+....++++|++..+++|.+++... ....+.+.|+|++|+||||+|+++++.....|-... ....
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~----~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV----GSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE----GGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe----hHHH
Confidence 3445678999999999998877531 123456999999999999999999988654442211 1011
Q ss_pred Hhc-CC-HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcC
Q 045202 83 EET-GR-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGR 144 (887)
Q Consensus 83 s~~-~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~ 144 (887)
... .+ .....+. .+......++.+|+|||++.. ..+..+...
T Consensus 88 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~ 147 (285)
T 3h4m_A 88 VKKFIGEGASLVKD--------------------IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE 147 (285)
T ss_dssp CCCSTTHHHHHHHH--------------------HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHH--------------------HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH
Confidence 111 00 0111111 112222345679999999653 112223222
Q ss_pred CC--CCCCCcEEEEEeCChhhhh-----hcCCCceEecCCCChHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHhhCC-C
Q 045202 145 LD--LFASGSRIIITTRDRQLLT-----NCGVDEKYQMKELVHADALKLFSRHAFGGDHP-YESHTELTCKTIKYARG-V 215 (887)
Q Consensus 145 ~~--~~~~gsrIiiTTR~~~v~~-----~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~G-l 215 (887)
.. ....+..||.||....... ....+..+.++..+.++..+++...+...... ..+ ...+++.+.| .
T Consensus 148 ~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~ 223 (285)
T 3h4m_A 148 MDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCV 223 (285)
T ss_dssp HHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCC
T ss_pred hhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCC
Confidence 21 1234567888887554322 11234579999999999999998887543322 223 3456666666 4
Q ss_pred hHHHHHHH
Q 045202 216 PLALKVWH 223 (887)
Q Consensus 216 PLal~~lg 223 (887)
|-.+..+.
T Consensus 224 ~~~i~~l~ 231 (285)
T 3h4m_A 224 GAELKAIC 231 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44554433
No 172
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=3.7e-07 Score=101.63 Aligned_cols=286 Identities=10% Similarity=0.103 Sum_probs=159.2
Q ss_pred ccccC-CCCcEEEecCCCCCCCCC-Ccc-CCCCccEEEeecC--CCCCCCccccc---CCccEEEccCCCCCCCCcc-hh
Q 045202 411 LTQHL-NKLAILNLSGRKNLQSLP-ARI-HLGLLKELNLSGC--SKLKRLPEISS---GNIETMRLDGTAPEELPSS-IE 481 (887)
Q Consensus 411 ~~~~l-~~L~~L~L~~~~~~~~lp-~~~-~l~~L~~L~L~~~--~~l~~lp~~~~---~~L~~L~L~~~~i~~lp~~-i~ 481 (887)
.|.++ ..|+.+.+... ...+. ..+ ++++|+.+.+..+ ..+..++...+ .+|+.+.+..+ +..++.. +.
T Consensus 58 aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 34444 35888888653 33333 334 4899999999875 34555555444 56666666543 5555544 67
Q ss_pred cCCCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCCCCCCCchhhcCCCCCceeeccCccCccCCccccCCCCCCEEE
Q 045202 482 CLSKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCSNLQRLPEELGNLQALDSLHAVGTAITEVPPSIVRLKRVRGIY 561 (887)
Q Consensus 482 ~l~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~ 561 (887)
.+.+|+.+.+..+ ....-...|..+.+|+.+.+..+ ....-...|. ...|+.+.+..+-..--...+..+.+|....
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceec
Confidence 7888888888652 23333456777888888888653 2222223343 3567777776544333334566777777776
Q ss_pred ccccCCCcccccc------------cccCCCcccEEecccCCCCCc-cccccCCCCCcEEEcCCCCCcccc-hhhhcCCC
Q 045202 562 LGRNRGLSLPITF------------SVDGLQNLLDLSLNDCCIMEL-PESLGLLSSVRELHLNGNNFERIP-ESIIQLSN 627 (887)
Q Consensus 562 L~~n~~~~~~~~~------------~~~~l~~L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~ 627 (887)
...+......-.. .+.....+..+.+.. .++.+ ...|..+.+|+.+.+..+. ..+. ..+.++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~ 289 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPA 289 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTT
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEeccccc-ceecCcccccccc
Confidence 6433221110000 000111122222211 11111 1245566677777765543 2333 45566777
Q ss_pred ccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCCCCCcchhHHHHHhHHHHHH
Q 045202 628 LKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPNDLGGIFKGALQKIQLLATA 707 (887)
Q Consensus 628 L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N~l~~i~~~~~~~l~~L~~l 707 (887)
|+.+.+... +..++...|.+|.+|+.+.+.. .++.+....|..+..|+.+.|.. .++.|-..+|.++.+|+.+
T Consensus 290 L~~i~l~~~-----i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 290 LQDIEFSSR-----ITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CCEEECCTT-----CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEE
T ss_pred cccccCCCc-----ccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEE
Confidence 777776532 3445556666777777777754 36666666777666776666643 3666767777777666655
Q ss_pred hhhh
Q 045202 708 RLKE 711 (887)
Q Consensus 708 ~l~~ 711 (887)
++.+
T Consensus 363 ~~~~ 366 (394)
T 4gt6_A 363 EYSG 366 (394)
T ss_dssp EESS
T ss_pred EECC
Confidence 5443
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.53 E-value=2.3e-07 Score=100.26 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=108.9
Q ss_pred CCCCCCcccccccHHHHHHhHhcC---CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG---STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||++..++++..++... ......+.|+|++|+||||+|+++++.....| .++. . +......++
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~---~~~~~~~~l 80 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-G---PAIEKPGDL 80 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-T---TTCCSHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-c---cccCChHHH
Confidence 345678999999999988887631 12335688999999999999999998765433 2231 1 111111111
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--HHHHHhcCCCCC------------------CCC
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--QIEFLVGRLDLF------------------ASG 151 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~------------------~~g 151 (887)
.. .+. ..+ .++.+|+|||++... ..+.+...+... .++
T Consensus 81 ~~----~l~-----------------~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 81 AA----ILA-----------------NSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp HH----HHT-----------------TTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred HH----HHH-----------------Hhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 11 110 001 245689999997642 333332211110 124
Q ss_pred cEEEEEeCChhhhh-hc--CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHHHH
Q 045202 152 SRIIITTRDRQLLT-NC--GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWHQA 225 (887)
Q Consensus 152 srIiiTTR~~~v~~-~~--~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg~~ 225 (887)
.++|.||....... .. .....+++..++.++..+++...+...... --.+..+.+++++.|.|-.+..+...
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~ 213 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRR 213 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 56777766443211 11 123589999999999999998877433222 22466788999999999877655533
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.52 E-value=1.3e-06 Score=95.44 Aligned_cols=195 Identities=11% Similarity=0.036 Sum_probs=110.6
Q ss_pred HHHHHHhhcccC-CCCCCCcccccccHHHHHHhHhc----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc
Q 045202 3 VNAILKRLDDTF-QSETNDLVGVELPMKEIESLLRS----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA 71 (887)
Q Consensus 3 ~~~~~~~l~~~~-~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~ 71 (887)
++.|.+.+.... +...++++|.+..+++|.+++.. .....+.|.|+|++|+|||++|+++++.....|-
T Consensus 67 ~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 67 IELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp HHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 455666665443 34457899999999999887752 1123567999999999999999999987643331
Q ss_pred eEEEccccHHHHhc-CC-HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------------H
Q 045202 72 GSYFANNVREAEET-GR-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------------R 136 (887)
Q Consensus 72 ~~~~~~~~~~~s~~-~~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------------~ 136 (887)
.+ +....... .+ .....+.+ +......++.+|+||+++.. .
T Consensus 147 ---~i-~~~~l~~~~~g~~~~~~~~~--------------------~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~ 202 (357)
T 3d8b_A 147 ---SI-SASSLTSKWVGEGEKMVRAL--------------------FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRR 202 (357)
T ss_dssp ---EE-EGGGGCCSSTTHHHHHHHHH--------------------HHHHHHTCSEEEEEETHHHHTBC------CHHHH
T ss_pred ---EE-ehHHhhccccchHHHHHHHH--------------------HHHHHhcCCeEEEEeCchhhhccCCCCcchHHHH
Confidence 22 11111111 01 00111111 11122345789999999532 1
Q ss_pred HHHHH----hcCCCCCCCCcEEEEEeCChhhhh-h--cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Q 045202 137 QIEFL----VGRLDLFASGSRIIITTRDRQLLT-N--CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTI 209 (887)
Q Consensus 137 ~~~~l----~~~~~~~~~gsrIiiTTR~~~v~~-~--~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~ 209 (887)
.+..+ .+.......+..||.||....... . -.....+.++..+.++..+++...+-..... --.+..+.++
T Consensus 203 ~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la 280 (357)
T 3d8b_A 203 IKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIV 280 (357)
T ss_dssp HHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHH
Confidence 12222 221111233456666776543211 1 1234578899999999999988776332211 1135667788
Q ss_pred HhhCC-ChHHHHHHH
Q 045202 210 KYARG-VPLALKVWH 223 (887)
Q Consensus 210 ~~~~G-lPLal~~lg 223 (887)
+.+.| .+-++..+.
T Consensus 281 ~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 281 QQSDAFSGADMTQLC 295 (357)
T ss_dssp HHTTTCCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHH
Confidence 88888 455565554
No 175
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3e-07 Score=97.50 Aligned_cols=167 Identities=11% Similarity=0.079 Sum_probs=97.7
Q ss_pred CcccccccHHHHHHhHhcC--CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc-------eEEEccccHHHHhcCCHHH
Q 045202 20 DLVGVELPMKEIESLLRSG--STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA-------GSYFANNVREAEETGRLGD 90 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~~~~~~s~~~~~~~ 90 (887)
.+.|||+++++|...|... ......+.|+|++|+|||++|++|.+++..... ..+.+. + ..-.+-..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN---c-~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID---A-LELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE---T-TCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe---c-cccCCHHH
Confidence 4899999999999877642 334567899999999999999999998754221 123342 1 11234456
Q ss_pred HHHHHHHHHhcCCCCCCCcccchHHHHHhh---CCceEEEEEecCCCHHHHHHHhcCCCCC-CCCc--EEEEEeCChhhh
Q 045202 91 LRQQLLSTLLNDGNVKSFPNIGLNFQSKRL---TRKKVLIVFYDVNHPRQIEFLVGRLDLF-ASGS--RIIITTRDRQLL 164 (887)
Q Consensus 91 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l---~~kk~LiVlDdv~~~~~~~~l~~~~~~~-~~gs--rIiiTTR~~~v~ 164 (887)
+...|++++.+..............+.+.+ .+++++||||+++...+-+.+...+.|. ...+ .||.++...+..
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 777788888654221111111222222322 4678999999998653212222211111 1223 333344332221
Q ss_pred ---------hhcCCCceEecCCCChHHHHHHHHHhh
Q 045202 165 ---------TNCGVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 165 ---------~~~~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
..+ ....+..++++.+|-.+++.+++
T Consensus 177 ~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 177 REQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 122 12578999999999999888765
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=7.9e-07 Score=102.31 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=107.3
Q ss_pred CCCCCCcccccccHHHHHHhHhcCC---------------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcccc
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGS---------------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNV 79 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~ 79 (887)
|...++++|++..++++..++.... ...+.+.|+|++|+||||+|+++++... +.. +.+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~~-i~in-- 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YDI-LEQN-- 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CEE-EEEC--
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEe--
Confidence 4455789999999999999987510 1347899999999999999999999873 221 2221
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH-----HHHHHhcCCCCCCCCcEE
Q 045202 80 REAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR-----QIEFLVGRLDLFASGSRI 154 (887)
Q Consensus 80 ~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~-----~~~~l~~~~~~~~~gsrI 154 (887)
.+.... ..+.+..+...........-...... .....+++.+||+|+++... .+..+...+. ..+.+|
T Consensus 110 --~s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~i 182 (516)
T 1sxj_A 110 --ASDVRS-KTLLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPL 182 (516)
T ss_dssp --TTSCCC-HHHHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCE
T ss_pred --CCCcch-HHHHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCE
Confidence 111112 22222222222111111000000000 00124678899999996431 1222222211 123446
Q ss_pred EEEeCChh---hhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH-HHHHH
Q 045202 155 IITTRDRQ---LLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL-ALKVW 222 (887)
Q Consensus 155 iiTTR~~~---v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 222 (887)
|+++.+.. +.........++++.++.++..+.+...+.......+ .+....|+++++|.+- |+..+
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 66665432 2222233468999999999999988776643221111 2346778888999554 44333
No 177
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.50 E-value=8.9e-06 Score=89.81 Aligned_cols=161 Identities=12% Similarity=0.128 Sum_probs=92.7
Q ss_pred CCCCceeeccCccCccCCccccCCCCCCEEEccccCCCcccccccccCCCcccEEecccCCCCCcc-ccccCCCCCcEEE
Q 045202 531 LQALDSLHAVGTAITEVPPSIVRLKRVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCCIMELP-ESLGLLSSVRELH 609 (887)
Q Consensus 531 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~ 609 (887)
...+..+.+..+........+..+.+|+.+.+..+- ... -...+.++..|+.+.+..+ ++.+. ..+..+.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~-~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGV-TTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTC-CEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccceeEEeecccccccccceeeeccce-eEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 334444443333222223345566677777664331 111 1223556677777777554 44443 3456677777777
Q ss_pred cCCCCCcccch-hhhcCCCccEeeccccccccccCCCcccccccCccceEecccCCCCCCCCcchhhhhcccCcccCCCC
Q 045202 610 LNGNNFERIPE-SIIQLSNLKSLFIRYCERLQFLPKLPCNLLVGCASLHGTGIIRRFIPNSSESDFLDLYLSDNFKLDPN 688 (887)
Q Consensus 610 L~~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~~lp~lp~~l~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~L~~N 688 (887)
+..+ ++.++. .+.++++|+.+.+.++. +..++...+.+|.+|+.+.+.. .++.+....|....+|+.+.+..+
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~----i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSA----IETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTT----CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccc-ceeccccccccccccccccccccc----cceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECCc
Confidence 7543 555553 56677777777776553 4445566666777777777754 366666677777777777766433
Q ss_pred CCCcchhHHHHHh
Q 045202 689 DLGGIFKGALQKI 701 (887)
Q Consensus 689 ~l~~i~~~~~~~l 701 (887)
++.|-..+|.++
T Consensus 344 -v~~I~~~aF~~c 355 (379)
T 4h09_A 344 -ITLIESGAFEGS 355 (379)
T ss_dssp -CCEECTTTTTTS
T ss_pred -cCEEchhHhhCC
Confidence 556655555544
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.48 E-value=1.8e-07 Score=96.16 Aligned_cols=175 Identities=13% Similarity=0.100 Sum_probs=101.3
Q ss_pred CCCCCccccc---ccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHH
Q 045202 16 SETNDLVGVE---LPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 16 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~ 92 (887)
...++++|.+ ..++.+..+.... ..+.+.|+|.+|+||||+|+++++..........|+... ......
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~-~~~~~~------ 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG-IHASIS------ 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-GGGGSC------
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-HHHHHH------
Confidence 3456788743 4445566665532 446789999999999999999999876554445555311 111000
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--H--HHHHhcCCCC-CCCC-cEEEEEeCChh----
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--Q--IEFLVGRLDL-FASG-SRIIITTRDRQ---- 162 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~--~~~l~~~~~~-~~~g-srIiiTTR~~~---- 162 (887)
.+.. +.+ .++.+||+||++... . .+.+...+.. ...+ .+||+||+...
T Consensus 96 -----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 -----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0000 111 345689999996431 1 2222221111 0122 25788776432
Q ss_pred -----hhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 163 -----LLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 163 -----v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
+.........++++.++.++..+++...+-.... .--.+..+.+++++.|.+-.+..+-
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1111112268999999999999999887632221 1124567788899999987776544
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.46 E-value=2.4e-06 Score=92.01 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=107.1
Q ss_pred CCCCCCCcccccccHHHHHHhHh----------cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLR----------SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAE 83 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s 83 (887)
+....++++|.+..+++|.+++. ......+-|.++|.+|+|||++|++++++....|-. + +.....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~---v-~~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS---V-SSSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE---E-EHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE---E-chHHHh
Confidence 34455789999999999998772 111224578999999999999999999986544422 1 111111
Q ss_pred hc-C-CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH-------------HHHHHh---cCC
Q 045202 84 ET-G-RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR-------------QIEFLV---GRL 145 (887)
Q Consensus 84 ~~-~-~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~-------------~~~~l~---~~~ 145 (887)
.. . ......+.++ ......++.+|++|+++... ....+. ...
T Consensus 89 ~~~~g~~~~~~~~~f--------------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 148 (322)
T 3eie_A 89 SKWMGESEKLVKQLF--------------------AMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV 148 (322)
T ss_dssp TTTGGGHHHHHHHHH--------------------HHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG
T ss_pred hcccchHHHHHHHHH--------------------HHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc
Confidence 11 0 0111111111 12223466899999997431 122222 222
Q ss_pred CCCCCCcEEEEEeCChhhhhh---cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCC-hHHHHH
Q 045202 146 DLFASGSRIIITTRDRQLLTN---CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGV-PLALKV 221 (887)
Q Consensus 146 ~~~~~gsrIiiTTR~~~v~~~---~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~ 221 (887)
.....+..||.||........ -..+..+.++..+.++..+++..++.+... .--......+++++.|. +-.+..
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 149 GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp GTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 223345667767765433211 124567889999999999999988743221 11234567788888874 444444
Q ss_pred HH
Q 045202 222 WH 223 (887)
Q Consensus 222 lg 223 (887)
+.
T Consensus 227 l~ 228 (322)
T 3eie_A 227 VV 228 (322)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 180
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.44 E-value=2.7e-06 Score=90.52 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=113.8
Q ss_pred ChHHHHHHhhcccC-CCCCCCcccccccHHHHHHhHhcC----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 1 EIVNAILKRLDDTF-QSETNDLVGVELPMKEIESLLRSG----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 1 ~i~~~~~~~l~~~~-~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
+|++.|++.+.... +...++++|.+..++++.+++... ....+.+.|+|++|+||||+|+++++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 57888988887654 445588999999999998877421 1124678999999999999999999876543
Q ss_pred cceEEEccccHHHHhc--CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH------------
Q 045202 70 SAGSYFANNVREAEET--GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP------------ 135 (887)
Q Consensus 70 f~~~~~~~~~~~~s~~--~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~------------ 135 (887)
|- .+ +....... .......+.++ ......++.+|++|+++..
T Consensus 82 ~~---~i-~~~~l~~~~~~~~~~~~~~~~--------------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~ 137 (297)
T 3b9p_A 82 FL---NI-SAASLTSKYVGDGEKLVRALF--------------------AVARHMQPSIIFIDEVDSLLSERSSSEHEAS 137 (297)
T ss_dssp EE---EE-ESTTTSSSSCSCHHHHHHHHH--------------------HHHHHTCSEEEEEETGGGTSBCC-----CCS
T ss_pred eE---Ee-eHHHHhhcccchHHHHHHHHH--------------------HHHHHcCCcEEEeccHHHhccccccCcchHH
Confidence 32 11 11011000 01111111111 1122345678999999643
Q ss_pred -HHHHHHh---cCCCC--CCCCcEEEEEeCChhhhhh---cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHH
Q 045202 136 -RQIEFLV---GRLDL--FASGSRIIITTRDRQLLTN---CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTC 206 (887)
Q Consensus 136 -~~~~~l~---~~~~~--~~~gsrIiiTTR~~~v~~~---~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~ 206 (887)
.....+. ...+. .+.+..||.||........ -.....+.++..+.++..+++...+-....+. ..+...
T Consensus 138 ~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~ 215 (297)
T 3b9p_A 138 RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALR 215 (297)
T ss_dssp HHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHH
Confidence 1111121 11111 1234567777775432111 02346788888888888888877663322111 134567
Q ss_pred HHHHhhCCChH-HHHHHH
Q 045202 207 KTIKYARGVPL-ALKVWH 223 (887)
Q Consensus 207 ~i~~~~~GlPL-al~~lg 223 (887)
.+++.+.|.+- ++..+.
T Consensus 216 ~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 216 RLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHH
Confidence 88888999886 554443
No 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.43 E-value=5.7e-06 Score=90.25 Aligned_cols=183 Identities=12% Similarity=0.040 Sum_probs=104.0
Q ss_pred CCCCCCcccccccHHHHHHhHhc----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 15 QSETNDLVGVELPMKEIESLLRS----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
+...++++|.+..+++|.+.+.. .....+-|.++|++|+|||++|+++++.....|-. + +..+...
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~---v-~~~~l~~ 122 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS---V-SSSDLVS 122 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE---E-EHHHHHS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-eHHHHhh
Confidence 34457899999999999887631 11223458899999999999999999987544321 1 1111111
Q ss_pred cC--CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH-------------HHHHHhcC---CC
Q 045202 85 TG--RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR-------------QIEFLVGR---LD 146 (887)
Q Consensus 85 ~~--~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~-------------~~~~l~~~---~~ 146 (887)
.+ ......+ ..+......++.+|+||+++... ....+... ..
T Consensus 123 ~~~g~~~~~~~--------------------~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 123 KWMGESEKLVK--------------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp CC---CHHHHH--------------------HHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred hhcchHHHHHH--------------------HHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 10 0001111 11112223567899999997431 12222221 11
Q ss_pred CCCCCcEEEEEeCChhhhh---hcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCC-hHHHHHH
Q 045202 147 LFASGSRIIITTRDRQLLT---NCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGV-PLALKVW 222 (887)
Q Consensus 147 ~~~~gsrIiiTTR~~~v~~---~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl-PLal~~l 222 (887)
....+..||.||....... .-..+..+.++..+.++..+++..++-.... .--......+++.+.|. +-.|..+
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1234566666776442211 1134568889999999999999887743221 11134567788888884 4445444
Q ss_pred H
Q 045202 223 H 223 (887)
Q Consensus 223 g 223 (887)
.
T Consensus 261 ~ 261 (355)
T 2qp9_X 261 V 261 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 182
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.42 E-value=4.4e-07 Score=101.98 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=106.3
Q ss_pred CCcc-cccccH--HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccce--EEEccccHHHHhcCCHHHHHH
Q 045202 19 NDLV-GVELPM--KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAG--SYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 19 ~~~v-Gr~~~~--~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~s~~~~~~~l~~ 93 (887)
+.|| |....+ ..+..+...... ...+.|+|.+|+||||||+++++.+..++.. ..++. ...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~~ 173 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLN 173 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHH
Confidence 4566 655443 334444443322 5679999999999999999999987665432 23442 112333
Q ss_pred HHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----HHHHHhcCCCC-CCCCcEEEEEeCCh-------
Q 045202 94 QLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----QIEFLVGRLDL-FASGSRIIITTRDR------- 161 (887)
Q Consensus 94 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~------- 161 (887)
++...+... ....+.+.++.+.-+|++||++... ..+.+...+.. ...|..||+||.+.
T Consensus 174 ~~~~~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l 244 (440)
T 2z4s_A 174 DLVDSMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_dssp HHHHHHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSC
T ss_pred HHHHHHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHH
Confidence 344333221 1233444555466799999996432 22222222211 23577899988763
Q ss_pred --hhhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 162 --QLLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 162 --~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
.+...+....++.++.++.++..+++.+.+-...... -.+....+++++.|.+-.+.-+
T Consensus 245 ~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 245 QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHH
Confidence 2222232346789999999999999988773211111 1234667788889988665443
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=2.4e-06 Score=89.11 Aligned_cols=176 Identities=14% Similarity=0.105 Sum_probs=99.4
Q ss_pred CCCCcccccccHHHHHHhHhc---CC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC
Q 045202 17 ETNDLVGVELPMKEIESLLRS---GS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG 86 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~---~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~ 86 (887)
..++++|.+..++++.+++.. .. ...+.+.|+|++|+|||++|++++++....|- .+. .......+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~~~-~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL---AMA-GAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE---EEE-TTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-hHHHHhhc
Confidence 457899999988888766532 11 23456889999999999999999997754432 111 10110000
Q ss_pred -CH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-----------------HHHHHHhcCCCC
Q 045202 87 -RL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-----------------RQIEFLVGRLDL 147 (887)
Q Consensus 87 -~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-----------------~~~~~l~~~~~~ 147 (887)
+. .... ...+.......+.+|++||++.. ..+..+...+..
T Consensus 80 ~~~~~~~~--------------------~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 80 GGLGAARV--------------------RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG 139 (262)
T ss_dssp TTHHHHHH--------------------HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT
T ss_pred cChhHHHH--------------------HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC
Confidence 00 0011 11122222345789999999864 112233222211
Q ss_pred --CCCCcEEEEEeCChhhhh-hc----CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH
Q 045202 148 --FASGSRIIITTRDRQLLT-NC----GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL 217 (887)
Q Consensus 148 --~~~gsrIiiTTR~~~v~~-~~----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL 217 (887)
...+..||.||....... .. ..+..+.++..+.++..+++...+-..... .........+++.+.|.+-
T Consensus 140 ~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 140 MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCH
T ss_pred cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCH
Confidence 123556777776544221 11 234688899999999999998876332221 2222234778888888764
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=4e-06 Score=91.58 Aligned_cols=196 Identities=10% Similarity=0.093 Sum_probs=113.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--cce-EEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--SAG-SYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--f~~-~~~~~~~~~~s~~~~~~~l 91 (887)
|...++++|++..++.+..++..+... .+.++|++|+||||+|+++.+.+... +.. ...+. .+...+...+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccchHHH
Confidence 445678999999999999998755322 28999999999999999999875421 211 11221 1111233222
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hhhhc-
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQ-LLTNC- 167 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~- 167 (887)
.+ .+........... .. ......-..++-+|++|+++.. ...+.+...+.......++|++|.... +....
T Consensus 107 ~~-~~~~~~~~~~~~~-~~---~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 107 RE-KVKNFARLTVSKP-SK---HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp TT-HHHHHHHSCCCCC-CT---THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HH-HHHHHhhhccccc-ch---hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 22 2222211100000 00 0011111345679999999643 334444433333345677888775443 21111
Q ss_pred CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 168 GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 168 ~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
.....+++.+++.++..+.+...+-..... --.+..+.++++++|.|-.+..+.
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 112478999999999999988776332221 124567889999999998765444
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.36 E-value=9.3e-06 Score=85.14 Aligned_cols=168 Identities=12% Similarity=0.085 Sum_probs=95.1
Q ss_pred CCCcccccccHHHHHH-------hHhc-CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCC--
Q 045202 18 TNDLVGVELPMKEIES-------LLRS-GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGR-- 87 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~-------~L~~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~-- 87 (887)
...++|.+..++++.. .+.. .....+.+.|+|.+|+|||++|+++++.....|-. +. ..+...+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~---i~---~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK---IC---SPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE---EE---CGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE---Ee---CHHHhcCCc
Confidence 3578999888777666 2321 13456789999999999999999999975544321 11 0010000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH------------HHHHHH---hcCCCCCCCCc
Q 045202 88 LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP------------RQIEFL---VGRLDLFASGS 152 (887)
Q Consensus 88 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~------------~~~~~l---~~~~~~~~~gs 152 (887)
....... ....+......+..+|+|||++.. ..++.+ .......+...
T Consensus 106 ~~~~~~~-----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 106 ETAKCQA-----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp HHHHHHH-----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred hHHHHHH-----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCE
Confidence 0000000 011222233456889999998643 122333 33222233445
Q ss_pred EEEEEeCChhhhhhc---C-CCceEecCCCCh-HHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCC
Q 045202 153 RIIITTRDRQLLTNC---G-VDEKYQMKELVH-ADALKLFSRHAFGGDHPYESHTELTCKTIKYARGV 215 (887)
Q Consensus 153 rIiiTTR~~~v~~~~---~-~~~~~~v~~L~~-~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~Gl 215 (887)
.||.||......... + ....++++.++. ++..+++.... .. -.+....+++.+.|.
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~~----~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---NF----KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---CS----CHHHHHHHHHHHTTS
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---CC----CHHHHHHHHHHhcCC
Confidence 677788877554431 1 246789999988 55555554421 11 134567778888874
No 186
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.34 E-value=8.2e-06 Score=87.66 Aligned_cols=184 Identities=13% Similarity=0.081 Sum_probs=104.7
Q ss_pred CCCCCCCcccccccHHHHHHhHhc---------C-CCCeeEEEEEcCCCcchHHHHHHHHHHH-hcccceEEEccccHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRS---------G-STNVCTLGIWGIGGIGKTTIAGAIFNKI-SRHSAGSYFANNVREA 82 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~---------~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~ 82 (887)
+....++++|.+..+++|.+.+.. + ....+.|.++|++|+|||++|++++++. ...|- .+. ..+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~---~i~-~~~l 82 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFF---SIS-SSDL 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE---EEE-CCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEE---EEE-hHHH
Confidence 334457899999999988877631 1 1234679999999999999999999976 32221 111 1000
Q ss_pred -Hhc-CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------------HHHHHHhcC---
Q 045202 83 -EET-GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------------RQIEFLVGR--- 144 (887)
Q Consensus 83 -s~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------------~~~~~l~~~--- 144 (887)
+.. .......+.+ +...-..++.+|++|+++.. .....+...
T Consensus 83 ~~~~~g~~~~~~~~l--------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 83 VSKWLGESEKLVKNL--------------------FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 142 (322)
T ss_dssp CCSSCCSCHHHHHHH--------------------HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC
T ss_pred HhhhhhHHHHHHHHH--------------------HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc
Confidence 000 0011111111 11222356789999999754 111222222
Q ss_pred CCCCCCCcEEEEEeCChhhhhh---cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH-HHH
Q 045202 145 LDLFASGSRIIITTRDRQLLTN---CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL-ALK 220 (887)
Q Consensus 145 ~~~~~~gsrIiiTTR~~~v~~~---~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~ 220 (887)
......+..||.||........ -..+..+.++..+.++..+++..++-+... .--......+++.+.|..- .+.
T Consensus 143 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~ 220 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADIS 220 (322)
T ss_dssp SSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHH
T ss_pred ccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHH
Confidence 2112345556666654332111 134568899999999999999887733221 1123456788888988743 454
Q ss_pred HHH
Q 045202 221 VWH 223 (887)
Q Consensus 221 ~lg 223 (887)
.+.
T Consensus 221 ~l~ 223 (322)
T 1xwi_A 221 IIV 223 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 187
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.34 E-value=3.9e-06 Score=94.08 Aligned_cols=180 Identities=14% Similarity=0.174 Sum_probs=107.8
Q ss_pred CCCCCCcccccccH---HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPM---KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...+++||.+..+ ..+...+..+ ....+.+||.+|+||||+|+.+.+.....|....- ...+..++
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a--------~~~~~~~i 91 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISA--------VTSGVKEI 91 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET--------TTCCHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe--------ccCCHHHH
Confidence 45567899999887 6777777754 34679999999999999999999987655532211 11233333
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--HHHHHhcCCCCCCCCcEEEE-EeCChhh--hh-
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--QIEFLVGRLDLFASGSRIII-TTRDRQL--LT- 165 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~~~gsrIii-TTR~~~v--~~- 165 (887)
.+ ++.... .....+++.+|++|+++... +.+.+...+.. ...++|. ||.+... ..
T Consensus 92 r~-~~~~a~----------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 RE-AIERAR----------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HH-HHHHHH----------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HH-HHHHHH----------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 22 221110 11124678899999997642 23333333221 2234443 5555431 11
Q ss_pred hcCCCceEecCCCChHHHHHHHHHhhcCCC-----CCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 166 NCGVDEKYQMKELVHADALKLFSRHAFGGD-----HPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 166 ~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~-----~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
......++.++.++.++..+++.+.+-... ....--.+..+.+++++.|.+-.+..+-
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 112345889999999999999888764311 1111234567788888999887665444
No 188
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.32 E-value=3.1e-06 Score=82.86 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=42.4
Q ss_pred CCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 16 SETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
...+.++|++.+++++.+.+... ..+.+.|+|.+|+||||+|+++++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568999999999999988753 3456789999999999999999987644
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.31 E-value=4.9e-06 Score=89.76 Aligned_cols=178 Identities=13% Similarity=0.127 Sum_probs=98.9
Q ss_pred CCCCcc-ccccc--HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHH
Q 045202 17 ETNDLV-GVELP--MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQ 93 (887)
Q Consensus 17 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~ 93 (887)
..+++| |.+.. ...+..++.........+.|+|++|+||||||+++++.....-...+++. . .++..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~---------~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A---------DDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H---------HHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H---------HHHHH
Confidence 445676 64433 33455555543323457899999999999999999997754322233442 1 12223
Q ss_pred HHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----HHHHHhcCCC-CCCCCcEEEEEeCChh------
Q 045202 94 QLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----QIEFLVGRLD-LFASGSRIIITTRDRQ------ 162 (887)
Q Consensus 94 ~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----~~~~l~~~~~-~~~~gsrIiiTTR~~~------ 162 (887)
.+...+... ....+.+... +..+|++||++... ..+.+...+. ....|.+||+||....
T Consensus 79 ~~~~~~~~~---------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 79 AMVEHLKKG---------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHT---------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHcC---------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 333333211 1222223332 35689999996532 1222222211 1134667888886431
Q ss_pred ---hhhhcCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHH
Q 045202 163 ---LLTNCGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 163 ---v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
+...+.....+++++ +.++..+++...+....... -.+..+.+++++ |..-.
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCHHH
Confidence 222222335799999 99999999988774322211 135567777888 77643
No 190
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.30 E-value=2.2e-06 Score=93.17 Aligned_cols=177 Identities=15% Similarity=0.167 Sum_probs=106.3
Q ss_pred CCCCCCcccccccHHHHHHhHhcC---CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG---STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
|...++++|++..++++..++... ......|.|+|++|+|||++|+++.++....|-. +. . +.......+
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---~~-~---~~~~~~~~~ 97 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKT---TA-A---PMIEKSGDL 97 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---EE-G---GGCCSHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---ec-c---hhccchhHH
Confidence 335578999999999999888752 2334568999999999999999998876554422 11 0 000111111
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCC------------------CCCC
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDL------------------FASG 151 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~------------------~~~g 151 (887)
.. ++ . . ..+..+|+||+++.. ...+.+...+.. ..++
T Consensus 98 ~~-~~--------------------~-~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 98 AA-IL--------------------T-N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp HH-HH--------------------H-T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred HH-HH--------------------H-h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 11 11 1 1 235578999999753 223333222111 0123
Q ss_pred cEEEEEeCChhhhh-h--cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 152 SRIIITTRDRQLLT-N--CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 152 srIiiTTR~~~v~~-~--~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
.++|.||....... . -..+..++++.++.++..+++...+-... ..--.+..+.+++.+.|.|-.+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 56666666533211 1 12346899999999999999987763222 11224567788889999996655443
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.29 E-value=4.4e-06 Score=91.86 Aligned_cols=199 Identities=12% Similarity=0.014 Sum_probs=107.3
Q ss_pred CCCcccccccHHHH---HHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 18 TNDLVGVELPMKEI---ESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 18 ~~~~vGr~~~~~~l---~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
.+++||++..++.+ ...+..+....+.+.|+|++|+|||++|+++.+.+....... .+......+...+..+...+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHHH
Confidence 46899999887764 444454433346899999999999999999999876432211 11111111222233333333
Q ss_pred HHHHHhcCC---------------------C----CC-CCcccchHHHHHh---------hCCc----eEEEEEecCCCH
Q 045202 95 LLSTLLNDG---------------------N----VK-SFPNIGLNFQSKR---------LTRK----KVLIVFYDVNHP 135 (887)
Q Consensus 95 il~~l~~~~---------------------~----~~-~~~~~~~~~~~~~---------l~~k----k~LiVlDdv~~~ 135 (887)
.+.+..+.. . .. .........+++. ..++ +.+|++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 333211100 0 00 0000111112111 1233 349999999754
Q ss_pred --HHHHHHhcCCCCCCCCcEEEEEeCC-----------------hhhhhhcCCCceEecCCCChHHHHHHHHHhhcCCCC
Q 045202 136 --RQIEFLVGRLDLFASGSRIIITTRD-----------------RQLLTNCGVDEKYQMKELVHADALKLFSRHAFGGDH 196 (887)
Q Consensus 136 --~~~~~l~~~~~~~~~gsrIiiTTR~-----------------~~v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~ 196 (887)
+..+.+...+...... .++++|.. +.+... -..+.+++++.++..+++...+-....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3455555544433333 44444431 122222 245899999999999999877643222
Q ss_pred CCccHHHHHHHHHHhhC-CChHHHHHHH
Q 045202 197 PYESHTELTCKTIKYAR-GVPLALKVWH 223 (887)
Q Consensus 197 ~~~~~~~l~~~i~~~~~-GlPLal~~lg 223 (887)
. --.+..+.+++++. |.|-.+..+-
T Consensus 278 ~--~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 E--MSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp C--BCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred C--CCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 22456778888887 8886655433
No 192
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=1.5e-06 Score=95.12 Aligned_cols=200 Identities=13% Similarity=0.073 Sum_probs=107.6
Q ss_pred CCCCCCcccccccHHHHHHhH-hcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccH-------------
Q 045202 15 QSETNDLVGVELPMKEIESLL-RSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVR------------- 80 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~------------- 80 (887)
|...++++|.+..++.+..++ ..+. ... +.|+|+.|+||||+|+.+...+...-.+.+++....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 445578999999999999888 5332 223 899999999999999999886532222211111000
Q ss_pred ---------HHHhc-CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH--HHHHHhcCCCCC
Q 045202 81 ---------EAEET-GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR--QIEFLVGRLDLF 148 (887)
Q Consensus 81 ---------~~s~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~--~~~~l~~~~~~~ 148 (887)
..+.. ..-....++++.++......... . .+ ..+.+++-++|+|+++..+ ..+.+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ----D-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc----c-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 00000 00000122222222111000000 0 00 0023466799999997642 233343333223
Q ss_pred CCCcEEEEEeCChh-hhhhc-CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHHH
Q 045202 149 ASGSRIIITTRDRQ-LLTNC-GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVWH 223 (887)
Q Consensus 149 ~~gsrIiiTTR~~~-v~~~~-~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~lg 223 (887)
..+.++|++|.+.. +.... .....+++++++.++..+.+...+-......+ ..+....+++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHHHH
Confidence 35678888887643 22211 23368999999999999998877632221111 02566788899999987665444
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.27 E-value=1.1e-05 Score=90.89 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=106.1
Q ss_pred CCCCCCcccccccHHHHHHhHhc----------CCCCeeEEEEEcCCCcchHHHHHHHHHHH-hcccceEEEccccHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRS----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKI-SRHSAGSYFANNVREAE 83 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~f~~~~~~~~~~~~s 83 (887)
+...++++|.+..+++|.+.+.. .....+.|.++|++|+|||++|+++++.. ...| +.+ +..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~---~~v-~~~--- 202 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSI-SSS--- 202 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE---EEE-CCC---
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE---EEE-eHH---
Confidence 34457899999999999887631 01234679999999999999999999976 2222 111 110
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCcccchHH-HHHhhCCceEEEEEecCCCH-------------HHHHHHhcCCCC--
Q 045202 84 ETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNF-QSKRLTRKKVLIVFYDVNHP-------------RQIEFLVGRLDL-- 147 (887)
Q Consensus 84 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~-~~~~l~~kk~LiVlDdv~~~-------------~~~~~l~~~~~~-- 147 (887)
++. ....+. ....... +...-..++.+|++|+++.. .....+...+..
T Consensus 203 ------~l~----~~~~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 203 ------DLV----SKWLGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred ------HHH----hhhcch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 111 010010 0111222 22222356789999999854 123444444433
Q ss_pred -CCCCcEEEEEeCChhhhhh---cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh-HHHHHH
Q 045202 148 -FASGSRIIITTRDRQLLTN---CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP-LALKVW 222 (887)
Q Consensus 148 -~~~gsrIiiTTR~~~v~~~---~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~l 222 (887)
...+..||.||........ -..+..+.++..+.++..++|..++-... ..--......+++.+.|.. -.|..+
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2345667777765433211 13456888999999999999988773322 1112345567888888854 344433
Q ss_pred H
Q 045202 223 H 223 (887)
Q Consensus 223 g 223 (887)
.
T Consensus 345 ~ 345 (444)
T 2zan_A 345 V 345 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.25 E-value=7.1e-06 Score=87.81 Aligned_cols=148 Identities=11% Similarity=0.073 Sum_probs=88.6
Q ss_pred CcccccccHHHHHHhHhcC-------------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc----eEEEccccHHH
Q 045202 20 DLVGVELPMKEIESLLRSG-------------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA----GSYFANNVREA 82 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~~-------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~----~~~~~~~~~~~ 82 (887)
+++|.+..+++|.+++... ......+.|+|.+|+|||++|+++.+.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 6899999999888766421 233457899999999999999999987644221 122221 1010
Q ss_pred Hh-cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCC-----------CHHHHHHHhcCCCCCCC
Q 045202 83 EE-TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVN-----------HPRQIEFLVGRLDLFAS 150 (887)
Q Consensus 83 s~-~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~-----------~~~~~~~l~~~~~~~~~ 150 (887)
.. ..+- .. ......+... +.-+|++|+++ ..+....+...+.....
T Consensus 111 ~~~~~g~--~~-----------------~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 111 VGQYIGH--TA-----------------PKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp CCSSTTC--HH-----------------HHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred hhhcccc--cH-----------------HHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 00 0000 00 0001111111 23489999997 33444555544443445
Q ss_pred CcEEEEEeCChh----------hhhhcCCCceEecCCCChHHHHHHHHHhhc
Q 045202 151 GSRIIITTRDRQ----------LLTNCGVDEKYQMKELVHADALKLFSRHAF 192 (887)
Q Consensus 151 gsrIiiTTR~~~----------v~~~~~~~~~~~v~~L~~~~a~~Lf~~~af 192 (887)
+.+||.||.... +... ....+.++.++.++-.+++...+-
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 678888886432 2222 236899999999999999988764
No 195
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=4.9e-07 Score=88.87 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=50.5
Q ss_pred hcCCCCCceeeccCc-cCc-----cCCccccCCCCCCEEEccccCCCccc---ccccccCCCcccEEecccCCCCC----
Q 045202 528 LGNLQALDSLHAVGT-AIT-----EVPPSIVRLKRVRGIYLGRNRGLSLP---ITFSVDGLQNLLDLSLNDCCIME---- 594 (887)
Q Consensus 528 l~~l~~L~~L~L~~n-~i~-----~lp~~l~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~Ls~n~l~~---- 594 (887)
+...++|++|+|++| .+. .+...+...++|++|+|++|.+.... +...+...++|++|+|++|.+.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334444444444444 443 12223333444444444444433211 12223334455555555555553
Q ss_pred -ccccccCCCCCcEEEc--CCCCCcc-----cchhhhcCCCccEeeccccc
Q 045202 595 -LPESLGLLSSVRELHL--NGNNFER-----IPESIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 595 -lp~~~~~l~~L~~L~L--~~n~l~~-----lp~~l~~l~~L~~L~L~~c~ 637 (887)
+...+...++|++|+| ++|.|.. +...+...++|++|+|++|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3344555555666666 5555551 33344445555555555553
No 196
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.21 E-value=1.6e-05 Score=87.95 Aligned_cols=182 Identities=13% Similarity=0.073 Sum_probs=100.9
Q ss_pred CCCCCcccccccHHHHHHhHhcC----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhc
Q 045202 16 SETNDLVGVELPMKEIESLLRSG----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEET 85 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~ 85 (887)
...++++|.+..+++|..++... ....+-|.|+|.+|+|||++|+++.++....|- .+ +.......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~---~v-~~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF---NI-SAASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE---EE-CSCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE---Ee-eHHHhhcc
Confidence 34568999999999999887320 112467999999999999999999887543331 11 11010000
Q ss_pred C--CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------------HHHHHHhcC----CC
Q 045202 86 G--RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------------RQIEFLVGR----LD 146 (887)
Q Consensus 86 ~--~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------------~~~~~l~~~----~~ 146 (887)
+ ......+.++ ...-...+.+|+||+++.. .....+... ..
T Consensus 188 ~~g~~~~~~~~~~--------------------~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 188 YVGEGEKLVRALF--------------------AVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ----CHHHHHHHH--------------------HHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred ccchHHHHHHHHH--------------------HHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 0 0011111111 1112234578999999644 111122111 11
Q ss_pred CCCCCcEEEEEeCChhhhh-h--cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChH-HHHHH
Q 045202 147 LFASGSRIIITTRDRQLLT-N--CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPL-ALKVW 222 (887)
Q Consensus 147 ~~~~gsrIiiTTR~~~v~~-~--~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPL-al~~l 222 (887)
......+||.||....... . -.....+.++..+.++..+++...+-...... ..+....+++.+.|..- ++..+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 1123455666666433221 1 12345788999999999999988774322221 23456788888888654 55444
Q ss_pred H
Q 045202 223 H 223 (887)
Q Consensus 223 g 223 (887)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.18 E-value=9.2e-06 Score=87.57 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=106.2
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQ 94 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~ 94 (887)
|...++++|.+..++.+..++..+. -..++.+.|++|+||||+|+++.+.+...| ..+. ....+...+..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-----~~~~~~~~i~~- 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-----GSDCKIDFVRG- 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-----TTTCCHHHHHT-
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-----ccccCHHHHHH-
Confidence 4456789999999999999998543 235788889999999999999998764322 2221 11223222222
Q ss_pred HHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH---HHHHHhcCCCCCCCCcEEEEEeCChhhhh-hc-CC
Q 045202 95 LLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR---QIEFLVGRLDLFASGSRIIITTRDRQLLT-NC-GV 169 (887)
Q Consensus 95 il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~---~~~~l~~~~~~~~~gsrIiiTTR~~~v~~-~~-~~ 169 (887)
.+.+.... ....+++-+||+||++... ..+.+...+.....+.+||+||....-.. .. ..
T Consensus 92 ~~~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 22221111 0112477899999998754 34444443332335678888887644211 00 11
Q ss_pred CceEecCCCChHHHHHHH-------HHhhcCCCCCCccHHHHHHHHHHhhCCChHHHH
Q 045202 170 DEKYQMKELVHADALKLF-------SRHAFGGDHPYESHTELTCKTIKYARGVPLALK 220 (887)
Q Consensus 170 ~~~~~v~~L~~~~a~~Lf-------~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~ 220 (887)
...++++.++.++-.+++ ...+-......+ ..+....++++++|.+-.+.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHHHH
Confidence 247999999988743332 222211111111 13667788889988876543
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.17 E-value=3.8e-05 Score=81.67 Aligned_cols=178 Identities=16% Similarity=0.125 Sum_probs=102.9
Q ss_pred CCCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAE 83 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s 83 (887)
....++++|.+..+++|.+++.. +-...+.|.|+|++|+||||+|+++++.....| +.+.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~------ 81 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK------ 81 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE------
Confidence 34456899999999998887653 123346799999999999999999999765332 2221
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHH----------------HHHHhcCCCC
Q 045202 84 ETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQ----------------IEFLVGRLDL 147 (887)
Q Consensus 84 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~----------------~~~l~~~~~~ 147 (887)
..++.. ...+.. .......+.......+.+|++|+++.... ...+...+..
T Consensus 82 ----~~~l~~----~~~g~~-----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 82 ----GPELLT----MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp ----HHHHHH----HHHTTC-----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred ----hHHHHh----hhcCch-----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 112221 221111 01112223333345678999999974211 1222221111
Q ss_pred --CCCCcEEEEEeCChhhhhh--c---CCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCChHH
Q 045202 148 --FASGSRIIITTRDRQLLTN--C---GVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 148 --~~~gsrIiiTTR~~~v~~~--~---~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPLa 218 (887)
...+..||.||........ . ..+..+.++..+.++-.+++..++-+... +..+.. .+++.+.|.|-+
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg~ 223 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSGA 223 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCHH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCHH
Confidence 1245677777765543211 1 23568999999999999998777633221 122333 455567777654
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=1.1e-06 Score=86.30 Aligned_cols=90 Identities=9% Similarity=0.082 Sum_probs=56.0
Q ss_pred hhcCCCCCceeeccCccCcc-----CCccccCCCCCCEEEccccCCCccc---ccccccCCCcccEEec--ccCCCCC--
Q 045202 527 ELGNLQALDSLHAVGTAITE-----VPPSIVRLKRVRGIYLGRNRGLSLP---ITFSVDGLQNLLDLSL--NDCCIME-- 594 (887)
Q Consensus 527 ~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~n~~~~~~---~~~~~~~l~~L~~L~L--s~n~l~~-- 594 (887)
.+...++|++|+|++|.+.. +...+...++|++|+|++|.+.... +...+...++|++|+| ++|.+.+
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH
Confidence 34444555555555555541 2334445566666666666654321 3334556677888888 7788774
Q ss_pred ---ccccccCCCCCcEEEcCCCCCc
Q 045202 595 ---LPESLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 595 ---lp~~~~~l~~L~~L~L~~n~l~ 616 (887)
+...+...++|++|+|++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4456667788999999998876
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=6.4e-05 Score=81.67 Aligned_cols=176 Identities=18% Similarity=0.164 Sum_probs=104.2
Q ss_pred CCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 16 SETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
...+++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||++++++....|-....- .-.+.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s---~l~sk 221 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA---ELVQK 221 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG---GGSCS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH---Hhhcc
Confidence 3447789999999998876642 223456789999999999999999999877665322111 01111
Q ss_pred cCCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----------------HHHHHhcCCCC
Q 045202 85 TGRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----------------QIEFLVGRLDL 147 (887)
Q Consensus 85 ~~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----------------~~~~l~~~~~~ 147 (887)
..+- ....++++.. .-...+++|++|+++..- .+..++..++.
T Consensus 222 ~vGese~~vr~lF~~--------------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 222 YIGEGSRMVRELFVM--------------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp STTHHHHHHHHHHHH--------------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHH--------------------HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 1111 1222222222 223467899999997320 12223332222
Q ss_pred C--CCCcEEEEEeCChhhh-----hhcCCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCChHH
Q 045202 148 F--ASGSRIIITTRDRQLL-----TNCGVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 148 ~--~~gsrIiiTTR~~~v~-----~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPLa 218 (887)
+ ..+-.||.||..++.. +.-..+..++++..+.++..++|..+.-+... +..++ .++++.+.|.--|
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~SGA 356 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCSGA 356 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCCHH
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCCHH
Confidence 2 2344566677644432 21235789999999999999999887733221 22234 4566677776533
No 201
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=2.4e-06 Score=88.36 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=16.3
Q ss_pred cCCCcccEEecccCCCCCcc--ccccCCCCCcEEEcCCCCCc
Q 045202 577 DGLQNLLDLSLNDCCIMELP--ESLGLLSSVRELHLNGNNFE 616 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~L~~n~l~ 616 (887)
..+++|+.|+|++|.+.++. ..+..+ +|++|+|++|.+.
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 34444444444444444331 111122 4555555555544
No 202
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.94 E-value=0.0001 Score=79.56 Aligned_cols=180 Identities=13% Similarity=0.107 Sum_probs=100.4
Q ss_pred cccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHH----Hh
Q 045202 25 ELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLST----LL 100 (887)
Q Consensus 25 ~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~----l~ 100 (887)
+...+++...+..+. -.+.+.++|+.|+||||+|+++.+.+....... +. ..+.-...+.+... +.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~--------~c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HK--------SCGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TB--------CCSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CC--------CCCCCHHHHHHhcCCCCCEE
Confidence 344566666666432 235789999999999999999998764322100 00 00000001111100 00
Q ss_pred cCCCCCCCcccchH---HHHHhh-----CCceEEEEEecCCCH--HHHHHHhcCCCCCCCCcEEEEEeCChh-hhhhc-C
Q 045202 101 NDGNVKSFPNIGLN---FQSKRL-----TRKKVLIVFYDVNHP--RQIEFLVGRLDLFASGSRIIITTRDRQ-LLTNC-G 168 (887)
Q Consensus 101 ~~~~~~~~~~~~~~---~~~~~l-----~~kk~LiVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~-~ 168 (887)
.-...........+ .+.+.+ .+++-++|+|+++.. +..+.+...+.....++.+|++|.+.+ +.... .
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 00000000011111 122222 246778999999853 345556555554556778888877653 32222 3
Q ss_pred CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 169 VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 169 ~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
....+++++++.++..+.+...+ . -..+.+..+++.++|.|..+..
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~---~----~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV---T----MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC---C----CCHHHHHHHHHHTTTCHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHHH
Confidence 34689999999999999888765 1 1134557788999999976643
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=6.2e-05 Score=81.60 Aligned_cols=182 Identities=11% Similarity=0.158 Sum_probs=104.6
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-cce-EEEccccHHHHhcCCHHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-SAG-SYFANNVREAEETGRLGDLR 92 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~-~~~~~~~~~~s~~~~~~~l~ 92 (887)
|...++++|.+..++.|...+..+. ...+.++|+.|+||||+|+++...+... +.. ..-+ ..+...+...+.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~----~~~~~~~~~~ir 94 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL----NASDDRGIDVVR 94 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE----CTTSCCSHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE----cCcccccHHHHH
Confidence 3445678999888888988888543 2238999999999999999999875422 111 1111 111112322222
Q ss_pred HHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChh-hhhh-cC
Q 045202 93 QQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDRQ-LLTN-CG 168 (887)
Q Consensus 93 ~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~-~~ 168 (887)
+ .+....... ....+.+-++|+|+++. .+..+.+...+.......++|++|.... +... ..
T Consensus 95 ~-~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 95 N-QIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp T-HHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred H-HHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 2 222211100 00123467899999964 3334444433333345677777776543 1111 12
Q ss_pred CCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHH
Q 045202 169 VDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLAL 219 (887)
Q Consensus 169 ~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal 219 (887)
....+++.+++.++..+.+...+-.....- -.+..+.+++.++|.+--+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 235789999999998888876652222111 1346678888999987643
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=8.7e-05 Score=81.68 Aligned_cols=174 Identities=15% Similarity=0.149 Sum_probs=102.2
Q ss_pred CCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 16 SETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 16 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
...+++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||++++++....|-....- .-.+.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s---~L~sk 282 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS---ELVQK 282 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG---GGCCC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH---Hhhcc
Confidence 3446899999999999876532 223467899999999999999999999877665322111 01111
Q ss_pred cCCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----------------HHHHHhcCCCC
Q 045202 85 TGRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----------------QIEFLVGRLDL 147 (887)
Q Consensus 85 ~~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----------------~~~~l~~~~~~ 147 (887)
..+- ....+.++. ..-...+++|++|+++..- .+..++..++.
T Consensus 283 ~vGesek~ir~lF~--------------------~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 342 (467)
T 4b4t_H 283 YVGEGARMVRELFE--------------------MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG 342 (467)
T ss_dssp SSSHHHHHHHHHHH--------------------HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH--------------------HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc
Confidence 1121 122222222 2223568999999996320 11222222221
Q ss_pred C--CCCcEEEEEeCChhhh-----hhcCCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCCh
Q 045202 148 F--ASGSRIIITTRDRQLL-----TNCGVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 148 ~--~~gsrIiiTTR~~~v~-----~~~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 216 (887)
+ ..+-.||.||-..... +.-..+..++++..+.++-.++|..++-+... ...++ ..+++.+.|.-
T Consensus 343 ~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 343 FDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp SCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred cCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 2 2334455666544332 21135788999999999999999887733221 22234 45566777764
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.0001 Score=81.34 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=104.5
Q ss_pred CCCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-
Q 045202 15 QSETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA- 82 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~- 82 (887)
....+++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||++++++....|-. +. ..+.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~---v~-~s~l~ 252 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF---SP-ASGIV 252 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE---EE-GGGTC
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---Ee-hhhhc
Confidence 34457889999999998876642 22345789999999999999999999987765532 21 1111
Q ss_pred HhcCCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCC
Q 045202 83 EETGRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRL 145 (887)
Q Consensus 83 s~~~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~ 145 (887)
+...+- ....+.++. ..-...+++|++|+++.. ..+..++..+
T Consensus 253 sk~~Gese~~ir~~F~--------------------~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 312 (437)
T 4b4t_L 253 DKYIGESARIIREMFA--------------------YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQM 312 (437)
T ss_dssp CSSSSHHHHHHHHHHH--------------------HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHH--------------------HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHh
Confidence 111111 122222221 222356899999999632 0122233222
Q ss_pred CC--CCCCcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCChH
Q 045202 146 DL--FASGSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVPL 217 (887)
Q Consensus 146 ~~--~~~gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlPL 217 (887)
+. ...+..||.||-.+...... .-+..+.++..+.++-.++|..+.-+... +..++ ..+++.+.|.--
T Consensus 313 Dg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~sG 388 (437)
T 4b4t_L 313 DGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFNG 388 (437)
T ss_dssp HSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCCH
T ss_pred hcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCCH
Confidence 21 22355677777655443221 23568999999999999999877643221 22334 456677777653
Q ss_pred H
Q 045202 218 A 218 (887)
Q Consensus 218 a 218 (887)
|
T Consensus 389 A 389 (437)
T 4b4t_L 389 A 389 (437)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.88 E-value=1.6e-05 Score=77.62 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCCcccc----cccHHHHHHhHhcCC-CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 18 TNDLVGV----ELPMKEIESLLRSGS-TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 18 ~~~~vGr----~~~~~~l~~~L~~~~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+++++. ...++.+.+++..-. ..-..++|+|+.|+||||||+++++.+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556653 333444555554322 2346899999999999999999999774
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.88 E-value=1.2e-05 Score=75.50 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=36.3
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+++||++..++++.+.+..-...-.-|.|+|.+|+|||++|+++++..
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999988775422223447899999999999999999854
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=4.5e-05 Score=84.15 Aligned_cols=175 Identities=13% Similarity=0.114 Sum_probs=102.1
Q ss_pred CCCCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA 82 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 82 (887)
+....+++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.+|++++++....|-... ....
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~----~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA----APQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE----GGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe----hhhh
Confidence 334457899999999998876432 2234578999999999999999999998766553221 1111
Q ss_pred -HhcCCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH------------H----HHHHHhcC
Q 045202 83 -EETGRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP------------R----QIEFLVGR 144 (887)
Q Consensus 83 -s~~~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~------------~----~~~~l~~~ 144 (887)
+...+- ....+.++.. .-...+++|++|+++.. . .+..++..
T Consensus 252 ~~~~vGese~~ir~lF~~--------------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ 311 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFAL--------------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ 311 (434)
T ss_dssp CSSCSSHHHHHHHHHHHH--------------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHH--------------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH
Confidence 111121 1222333221 11235789999998522 0 12223333
Q ss_pred CCCCC--CCcEEEEEeCChhhhhh-----cCCCceEecCCCChHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHhhCCCh
Q 045202 145 LDLFA--SGSRIIITTRDRQLLTN-----CGVDEKYQMKELVHADALKLFSRHAFGGD-HPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 145 ~~~~~--~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlP 216 (887)
++.+. .+-.||.||..+..... -..+..++++..+.++..++|..+.-+.. .+..++ ..+++.+.|.-
T Consensus 312 ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 312 LDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp HTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred hhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 33222 33455557765544322 12466899999999999999987663222 122234 45566777754
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.88 E-value=5.4e-05 Score=85.71 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=101.2
Q ss_pred CCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC
Q 045202 18 TNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG 86 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~ 86 (887)
.++++|.+..+++|.+++... ....+-|.|+|.+|+|||++|+++.++....| ...+........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhhh
Confidence 457999999999998877532 23345689999999999999999988764333 221221221111
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH-------------HHHHHHhcCCC--CCCCC
Q 045202 87 RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP-------------RQIEFLVGRLD--LFASG 151 (887)
Q Consensus 87 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~-------------~~~~~l~~~~~--~~~~g 151 (887)
- .+... .....+.....+++.+|+||+++.. .....+...+. ....+
T Consensus 279 ~-g~~~~-----------------~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 A-GESES-----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp T-THHHH-----------------HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred c-chhHH-----------------HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 0 00000 0112222333456789999999421 11222222221 12234
Q ss_pred cEEEEEeCChhh-hhh----cCCCceEecCCCChHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHhhCCC-hHHHHHHH
Q 045202 152 SRIIITTRDRQL-LTN----CGVDEKYQMKELVHADALKLFSRHAFGGDHP-YESHTELTCKTIKYARGV-PLALKVWH 223 (887)
Q Consensus 152 srIiiTTR~~~v-~~~----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~Gl-PLal~~lg 223 (887)
.+||.||..... ... ......+.++..+.++-.+++..++-..... ..++ .++++++.|. +-.+..+.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAALC 415 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHHHH
Confidence 566667765432 111 1234578999999999999998877332211 1223 4566667764 44455443
No 210
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.85 E-value=1.6e-05 Score=83.03 Aligned_cols=155 Identities=14% Similarity=0.147 Sum_probs=86.8
Q ss_pred CCCCCCcccccccHHHHHHhHhc----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 15 QSETNDLVGVELPMKEIESLLRS----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
....++++|.+..++++.+++.. +....+-+.|+|.+|+|||++|++++++....|-. + +......
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~ 82 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIE 82 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHH
Confidence 34457899999999998877652 11112347899999999999999999976544321 1 0000000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH-----------------HHHHHhcCCCC
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR-----------------QIEFLVGRLDL 147 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~-----------------~~~~l~~~~~~ 147 (887)
. ..+. ..... ...+......++.+|++||++... .+..+...+..
T Consensus 83 ~-------------~~~~--~~~~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 83 M-------------FVGL--GASRV---RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp S-------------CSSS--CSSSS---STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred h-------------hcch--HHHHH---HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 0 0000 00111 112222223456799999996431 12223333322
Q ss_pred CC---CCcEEEEEeCChhhhh-h----cCCCceEecCCCChHHHHHHHHHhh
Q 045202 148 FA---SGSRIIITTRDRQLLT-N----CGVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 148 ~~---~gsrIiiTTR~~~v~~-~----~~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
.. ....||.||....... . ...+..+.++..+.++..+++...+
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 21 2245666776554221 1 1234578889999999999887765
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=0.00016 Score=74.84 Aligned_cols=183 Identities=13% Similarity=0.047 Sum_probs=96.7
Q ss_pred CCCCCCcccccccHHHHHHhHhc---C-------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 15 QSETNDLVGVELPMKEIESLLRS---G-------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
+...++++|.+..++++.+++.. . ....+-+.|+|.+|+||||+|+++.+.....| +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 44557899999888887665431 1 11234588999999999999999998765433 2221 100000
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCCCC-
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRLDL- 147 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~~~- 147 (887)
.. . ..........+.........++++|+++.. .....+...+..
T Consensus 84 ~~-----------------~-~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 84 MF-----------------V-GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp SC-----------------C-CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred Hh-----------------h-hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 00 0 000000111222233445678999998321 112222221111
Q ss_pred -CCCCcEEEEEeCChhhh-hhc----CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCC-ChHHHH
Q 045202 148 -FASGSRIIITTRDRQLL-TNC----GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARG-VPLALK 220 (887)
Q Consensus 148 -~~~gsrIiiTTR~~~v~-~~~----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~G-lPLal~ 220 (887)
...+..||.||...... ... ..+..+.++..+.++-.+++..++-+.....+. ....++..+.| .+--+.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHHH
Confidence 12345677777655422 111 234578888888888888887765221111111 12345667777 665554
Q ss_pred HH
Q 045202 221 VW 222 (887)
Q Consensus 221 ~l 222 (887)
.+
T Consensus 223 ~l 224 (257)
T 1lv7_A 223 NL 224 (257)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.0001 Score=81.18 Aligned_cols=173 Identities=16% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhc
Q 045202 17 ETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEET 85 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~ 85 (887)
..+++.|.+..+++|.+.+.. +-...+-|.++|++|+|||++|++++++....|-..-.- .-.+..
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~---~l~~~~ 246 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS---EFVHKY 246 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG---GTCCSS
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc---hhhccc
Confidence 346889999999998876642 223457799999999999999999999877655322111 011111
Q ss_pred CCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCCC--
Q 045202 86 GRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRLD-- 146 (887)
Q Consensus 86 ~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~~-- 146 (887)
.+- ....++++.. .-...+++|++|+++.. ..+..+...++
T Consensus 247 ~Ge~e~~ir~lF~~--------------------A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 247 LGEGPRMVRDVFRL--------------------ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp CSHHHHHHHHHHHH--------------------HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHHH--------------------HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 111 1222222222 22346789999998521 01222222221
Q ss_pred CCCCCcEEEEEeCChhhh-----hhcCCCceEecCCC-ChHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHhhCCCh
Q 045202 147 LFASGSRIIITTRDRQLL-----TNCGVDEKYQMKEL-VHADALKLFSRHAFGGD-HPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 147 ~~~~gsrIiiTTR~~~v~-----~~~~~~~~~~v~~L-~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlP 216 (887)
....+-.||.||...+.. +.-..+..++++.+ +.++-.++|..+.-+.. .+..++ ..+++.+.|.-
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTCC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCCC
Confidence 122344566677644432 21123557888766 45555667766653322 222334 45566677764
No 213
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00016 Score=78.69 Aligned_cols=174 Identities=17% Similarity=0.157 Sum_probs=102.1
Q ss_pred CCCCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-
Q 045202 15 QSETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA- 82 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~- 82 (887)
....+++.|.+..+++|.+.+.. +-...+-|.++|++|+|||.||++++++....|-... ..+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~----~s~l~ 253 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV----GSELI 253 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE----SGGGC
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE----HHHhh
Confidence 34457888999999998876542 1234578999999999999999999998776653221 1111
Q ss_pred HhcCCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCC
Q 045202 83 EETGRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRL 145 (887)
Q Consensus 83 s~~~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~ 145 (887)
+...+- ....+.++.. .-...+++|++|+++.. ..+..++..+
T Consensus 254 sk~vGesek~ir~lF~~--------------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKV--------------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp CSSSSHHHHHHHHHHHH--------------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHHH--------------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 111111 1223333222 12346789999998622 1122222222
Q ss_pred CC--CCCCcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcCCCC-CCccHHHHHHHHHHhhCCCh
Q 045202 146 DL--FASGSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFGGDH-PYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 146 ~~--~~~gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~-~~~~~~~l~~~i~~~~~GlP 216 (887)
+. ...+-.||.||-..+..... ..+..+.++..+.++..++|..+.-+... +..++ ..+++.+.|.-
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 21 22344566677655543321 23567899999999999999887733221 22234 45566677764
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.75 E-value=8e-05 Score=91.03 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=41.3
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
..+.+|||+.++.++...|.... ..-+.++|.+|+||||+|+.+.+++..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 44679999999999999987543 234789999999999999999998743
No 215
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.75 E-value=0.00012 Score=82.86 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=82.3
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc------ceEEEccccHHHHhcCCHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS------AGSYFANNVREAEETGRLGD 90 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~~~~ 90 (887)
..+.+||++.+++++...|..... .-+.++|.+|+|||++|+.+...+...+ ...++..+.. ..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~--~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--~~------ 247 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--TK------ 247 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--cc------
Confidence 346799999999999999875332 3467999999999999999999874432 1222221111 00
Q ss_pred HHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhc---
Q 045202 91 LRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNC--- 167 (887)
Q Consensus 91 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~--- 167 (887)
..+. ........+...-..++.++++| ...+....+...+. ...-++|.+|.........
T Consensus 248 --------~~g~-----~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 248 --------YRGE-----FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred --------ccch-----HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence 0000 00111222223333567888999 22332333443332 2234566655544321111
Q ss_pred ----CCCceEecCCCChHHHHHHHHHhh
Q 045202 168 ----GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 168 ----~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
..-..+.++..+.++..+++...+
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 122479999999999999998654
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=1.9e-05 Score=81.64 Aligned_cols=84 Identities=14% Similarity=0.208 Sum_probs=61.2
Q ss_pred cCCCcccEEecccCCCCCc---cccccCCCCCcEEEcCCCCCcccchhhhcCC--CccEeeccccccccccCCCcc---c
Q 045202 577 DGLQNLLDLSLNDCCIMEL---PESLGLLSSVRELHLNGNNFERIPESIIQLS--NLKSLFIRYCERLQFLPKLPC---N 648 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n~l~~l---p~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~--~L~~L~L~~c~~l~~lp~lp~---~ 648 (887)
.++++|+.|+|++|.++++ |..+..+++|+.|+|++|+|+.+. .+..+. +|++|+|++|+..+.+|..+. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4567788888888887764 456678999999999999999774 344444 999999999987666653321 2
Q ss_pred ccccCccceEecc
Q 045202 649 LLVGCASLHGTGI 661 (887)
Q Consensus 649 l~~~~~~L~~L~l 661 (887)
+...+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2247788888764
No 217
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=1.1e-05 Score=77.30 Aligned_cols=85 Identities=22% Similarity=0.283 Sum_probs=48.9
Q ss_pred CCCEEEccccCCCcccccccccCCCcccEEecccCC-CCC-ccccccCC----CCCcEEEcCCC-CCcc-cchhhhcCCC
Q 045202 556 RVRGIYLGRNRGLSLPITFSVDGLQNLLDLSLNDCC-IME-LPESLGLL----SSVRELHLNGN-NFER-IPESIIQLSN 627 (887)
Q Consensus 556 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-lp~~~~~l----~~L~~L~L~~n-~l~~-lp~~l~~l~~ 627 (887)
+|+.|+++++.++...+.. +.++++|+.|+|++|. +++ --..++.+ ++|++|+|++| +++. --..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4555555544444333322 4566777777777774 554 12233332 46777777776 4661 1234567788
Q ss_pred ccEeeccccccccc
Q 045202 628 LKSLFIRYCERLQF 641 (887)
Q Consensus 628 L~~L~L~~c~~l~~ 641 (887)
|++|+|++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888888865543
No 218
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=8.4e-05 Score=73.84 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCCCCccccccc----HHHHHHhHhcCCCC--eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 16 SETNDLVGVELP----MKEIESLLRSGSTN--VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 16 ~~~~~~vGr~~~----~~~l~~~L~~~~~~--~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
...+++++.+.. ++.+..++...... .+.+.|+|.+|+||||||+++++....+....+|+
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345678876543 34455565543222 26799999999999999999999876665555666
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.68 E-value=0.00034 Score=78.43 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=98.5
Q ss_pred CCCCcccccccHHHHHHhHhc--C--------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhc-
Q 045202 17 ETNDLVGVELPMKEIESLLRS--G--------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEET- 85 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~- 85 (887)
..++++|.+..++++.+++.. . ..-.+-|.|+|++|+||||||+++.++....|-. + +..+....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~---i-s~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFH---I-SGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE---E-EGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeee---C-CHHHHHHHH
Confidence 446899999988887766432 1 1112458899999999999999999976544421 1 11111111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCCCC--
Q 045202 86 GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRLDL-- 147 (887)
Q Consensus 86 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~~~-- 147 (887)
.+.. . ......+.+.....+.+|+||+++.. ..+..+...+..
T Consensus 90 ~g~~---~----------------~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 90 VGVG---A----------------ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp TTHH---H----------------HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred hccc---H----------------HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 1100 0 00112223333456789999999542 112333322211
Q ss_pred CCCCcEEEEEeCChhhhhh--c---CCCceEecCCCChHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHhhCCCh
Q 045202 148 FASGSRIIITTRDRQLLTN--C---GVDEKYQMKELVHADALKLFSRHAFGGDHP-YESHTELTCKTIKYARGVP 216 (887)
Q Consensus 148 ~~~gsrIiiTTR~~~v~~~--~---~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~GlP 216 (887)
...+..||.||...+.... . ..+..+.++..+.++-.+++..++-..... ..+ ...+++.+.|..
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 1245677777776654321 1 234588899999888888887776332211 112 234677788876
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.67 E-value=0.00017 Score=77.03 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=39.9
Q ss_pred CCcccccccHHHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 19 NDLVGVELPMKEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+.++|.+..++.+...+.... .....+.++|.+|+||||+|+++++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999888776421 11357999999999999999999997644
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.67 E-value=0.00036 Score=84.36 Aligned_cols=154 Identities=13% Similarity=0.146 Sum_probs=87.5
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc------cceEEEccccHHHHhcCCHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH------SAGSYFANNVREAEETGRLGD 90 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~s~~~~~~~ 90 (887)
..+.++||+.+++++.+.|.... ..-+.++|.+|+||||+|+.+.+++... ....+|..+......
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------ 255 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------ 255 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C------
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc------
Confidence 34579999999999999987543 3447899999999999999999876432 233333322111100
Q ss_pred HHHHHHHHHhcCCCCCCCcccchHHHHHhh-CCceEEEEEecCCCH----------HHH-HHHhcCCCCCCCCcEEEEEe
Q 045202 91 LRQQLLSTLLNDGNVKSFPNIGLNFQSKRL-TRKKVLIVFYDVNHP----------RQI-EFLVGRLDLFASGSRIIITT 158 (887)
Q Consensus 91 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~~----------~~~-~~l~~~~~~~~~gsrIiiTT 158 (887)
+ .......+.....+.+.+ ..++.+|++||++.. .+. ..+...+. ..+-++|.+|
T Consensus 256 ----------~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 256 ----------G-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp ----------C-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred ----------c-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 0 000011111111122222 345789999999754 222 22333322 2345666666
Q ss_pred CChhhhhhcC-------CCceEecCCCChHHHHHHHHHhh
Q 045202 159 RDRQLLTNCG-------VDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 159 R~~~v~~~~~-------~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
.......... .-..+.++..+.++..+++...+
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6543321111 11368999999999988887544
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.64 E-value=1.8e-05 Score=73.99 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=34.9
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
-+++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4689999999998887764212223478999999999999999987543
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.63 E-value=0.00011 Score=78.37 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=39.2
Q ss_pred CCcccccccHHHHHHhHhcC------------CCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 19 NDLVGVELPMKEIESLLRSG------------STNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+.++|.+..++.+...+... ......+.++|.+|+|||++|+++.+....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999988877540 112346789999999999999999987744
No 224
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.60 E-value=0.00016 Score=76.61 Aligned_cols=146 Identities=10% Similarity=0.088 Sum_probs=90.0
Q ss_pred cccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh---cccceEEEccccHHHHhcCCHHHHHHHHHHHH
Q 045202 23 GVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS---RHSAGSYFANNVREAEETGRLGDLRQQLLSTL 99 (887)
Q Consensus 23 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l 99 (887)
|-+..++.+...+..+. .....++|+.|+||||+|+++.+... ........+... ....++.++ +++.+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHH
Confidence 44566778888887654 56889999999999999999987521 112222333210 012333333 2344333
Q ss_pred hcCCCCCCCcccchHHHHHhhCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCCh-hhhhhcCCCceEecC
Q 045202 100 LNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDR-QLLTNCGVDEKYQMK 176 (887)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~v~ 176 (887)
... -..+++-++|+|+++. ....+.|...+....+.+++|++|.++ .+......- .++++
T Consensus 75 ~~~----------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~ 137 (305)
T 2gno_A 75 NYS----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVV 137 (305)
T ss_dssp TSC----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEE
T ss_pred hhc----------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCC
Confidence 211 0124567889999975 344566665555455678888877554 344444334 99999
Q ss_pred CCChHHHHHHHHHhh
Q 045202 177 ELVHADALKLFSRHA 191 (887)
Q Consensus 177 ~L~~~~a~~Lf~~~a 191 (887)
+++.++..+.+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999888776
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.60 E-value=0.00037 Score=84.12 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=83.2
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc------ceEEEccccHHHHhcCCHHH
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS------AGSYFANNVREAEETGRLGD 90 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~s~~~~~~~ 90 (887)
..+.+||++.+++++...|..... .-+.++|.+|+||||+|+.+.+.+.... ...++..+. ...
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~--~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g~~------ 247 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--GTK------ 247 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCC--CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--ccc------
Confidence 346799999999999999875332 3378999999999999999999863321 222222111 000
Q ss_pred HHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhc---
Q 045202 91 LRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLLTNC--- 167 (887)
Q Consensus 91 l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~--- 167 (887)
..+ .........+......++.+|++| ...+....+...+. ...-++|.||.........
T Consensus 248 --------~~G-----~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 248 --------YRG-----EFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred --------ccc-----hHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 000 001111222333334677899999 23333333443333 2345666666544421111
Q ss_pred ----CCCceEecCCCChHHHHHHHHHhh
Q 045202 168 ----GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 168 ----~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
..-..+.++..+.++..+++...+
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 112579999999999999998554
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.55 E-value=5.6e-05 Score=78.75 Aligned_cols=50 Identities=22% Similarity=0.180 Sum_probs=35.3
Q ss_pred CCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 18 TNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+.+||.+..+.++.+.+..-......|.|+|.+|+|||++|+++++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45789999999988776654222234578999999999999999998653
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.43 E-value=0.00089 Score=79.50 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=98.9
Q ss_pred CCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-Hhc
Q 045202 18 TNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EET 85 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~~ 85 (887)
.+++.|.+..+++|.+++.. +-...+-|.++|++|+|||+||++++++...+| +.+ +..+. +..
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v-~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEE-EHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEE-EhHHhhccc
Confidence 35788999999998887542 113457899999999999999999998766543 222 22121 111
Q ss_pred CCH-HHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH-------------HHHHHhcCCCCC--C
Q 045202 86 GRL-GDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR-------------QIEFLVGRLDLF--A 149 (887)
Q Consensus 86 ~~~-~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~-------------~~~~l~~~~~~~--~ 149 (887)
.+- ....+.+ ........+.+|++|+++..- ....+....+.. .
T Consensus 279 ~gese~~lr~l--------------------F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 279 AGESESNLRKA--------------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp TTHHHHHHHHH--------------------HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred chHHHHHHHHH--------------------HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 111 1122222 223334568999999986320 122222221111 1
Q ss_pred CCcEEEEEeCChhhhh-hc----CCCceEecCCCChHHHHHHHHHhhcCCC-CCCccHHHHHHHHHHhhCCChHH
Q 045202 150 SGSRIIITTRDRQLLT-NC----GVDEKYQMKELVHADALKLFSRHAFGGD-HPYESHTELTCKTIKYARGVPLA 218 (887)
Q Consensus 150 ~gsrIiiTTR~~~v~~-~~----~~~~~~~v~~L~~~~a~~Lf~~~af~~~-~~~~~~~~l~~~i~~~~~GlPLa 218 (887)
.+-.||.||...+... .. .-+..+++...+.++-.++|..+.-+.. ....++ ..+++.+.|..-|
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfsga 409 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGA 409 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCCHH
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCCHH
Confidence 2334555665443322 11 2356899999999999999987763222 112233 4566677776533
No 228
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.42 E-value=0.00097 Score=71.84 Aligned_cols=176 Identities=17% Similarity=0.157 Sum_probs=97.4
Q ss_pred CCCCCCcccccccHHHHHHhHhcC---CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG---STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
+...+.++|.+..++.+...+..+ ......+.++|++|+||||||+.+...+...|.... . .+ .....++
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~s----g-~~--~~~~~~l 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTS----G-PV--LVKQGDM 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEE----T-TT--CCSHHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe----c-hH--hcCHHHH
Confidence 344567899988888877776532 223356899999999999999999998754332110 0 00 0001111
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCCC--------C----------CC
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDLF--------A----------SG 151 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~~--------~----------~g 151 (887)
. .+...+. ++-++++|+++.. ...+.+....... + +.
T Consensus 94 ~----------------------~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 94 A----------------------AILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp H----------------------HHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred H----------------------HHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1 0111122 2346678887542 2233332111000 0 11
Q ss_pred cEEE-EEeCChhhhhhc--CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHHH
Q 045202 152 SRII-ITTRDRQLLTNC--GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKVW 222 (887)
Q Consensus 152 srIi-iTTR~~~v~~~~--~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~l 222 (887)
-.++ .|++...+.... .....+.++..+.++-.+++.+.+-.... .-..+.+..|++++.|.|-.+.-+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHH
Confidence 1233 344433332211 23346899999999999999887632111 223467889999999999655433
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00015 Score=68.00 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
-..++|+|..|+||||||++++......-....++
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 35799999999999999999999765431124555
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.37 E-value=0.0015 Score=67.21 Aligned_cols=176 Identities=14% Similarity=0.126 Sum_probs=92.7
Q ss_pred CCCCCCCcccccccHHHHHHhHhc--C-------C-CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHH
Q 045202 14 FQSETNDLVGVELPMKEIESLLRS--G-------S-TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAE 83 (887)
Q Consensus 14 ~~~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s 83 (887)
+....++++|.+..+.++.++... . + .-.+-+.|+|.+|+||||||+++....... .+.+.. ....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~~-~~~~ 86 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFV 86 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEH-HHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEeeH-HHHH
Confidence 334457899998877777654431 0 0 111238999999999999999999876522 233311 1111
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh-CCceEEEEEecCCCH------------H----HHHHHhcCCC
Q 045202 84 ETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL-TRKKVLIVFYDVNHP------------R----QIEFLVGRLD 146 (887)
Q Consensus 84 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l-~~kk~LiVlDdv~~~------------~----~~~~l~~~~~ 146 (887)
... .....+ ....+-+.. .....++++|+++.. . ....+...+.
T Consensus 87 ~~~-~~~~~~------------------~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 147 (254)
T 1ixz_A 87 EMF-VGVGAA------------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 147 (254)
T ss_dssp HSC-TTHHHH------------------HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHH
T ss_pred HHH-hhHHHH------------------HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHh
Confidence 110 000000 011111222 234678999998422 1 1222322222
Q ss_pred CC--CCCcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcCCCCC-CccHHHHHHHHHHhhCCCh
Q 045202 147 LF--ASGSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFGGDHP-YESHTELTCKTIKYARGVP 216 (887)
Q Consensus 147 ~~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~-~~~~~~l~~~i~~~~~GlP 216 (887)
.. .....++.||..+.+.... ..+..++++..+.++-.+++..++-+.... ..+ ...+++.+.|.-
T Consensus 148 g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 148 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 11 1223455567666553321 245678999999998888888766322111 112 234666777754
No 231
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.37 E-value=0.00013 Score=77.57 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=38.2
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999888776533233457899999999999999999854
No 232
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.33 E-value=0.0021 Score=72.33 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=38.5
Q ss_pred CCCcccccccHHHHHHhH---hcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 18 TNDLVGVELPMKEIESLL---RSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.++++|.+..++++..++ ..+....+-+.++|++|+|||++|+++.+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 378999998887655444 33333345688999999999999999998765
No 233
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.29 E-value=0.00017 Score=68.98 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=20.7
Q ss_pred CCCcEEecccCCCCccCCcccCCCCCCcEEEeeCCC
Q 045202 484 SKLLHLDLVDCKTLKSLPSGLGKLKSLGILSIDGCS 519 (887)
Q Consensus 484 ~~L~~L~L~~~~~~~~lp~~l~~L~~L~~L~L~~~~ 519 (887)
.+|+.||+++|.+...--..+.++++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 456666666665443322335566666666666665
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.26 E-value=0.0025 Score=66.61 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=92.9
Q ss_pred CCCCCCcccccccHHHHHHhHhcC---------C-CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 15 QSETNDLVGVELPMKEIESLLRSG---------S-TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~---------~-~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
....++++|.+..++++.++...- + .-.+-+.|+|..|+||||||+++....... .+.+.. .....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~---~i~~~~-~~~~~ 111 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFVE 111 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEH-HHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC---EEEecH-HHHHH
Confidence 344568999998877776654310 0 011238999999999999999999876522 233311 11111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCCCCC
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRLDLF 148 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~~~~ 148 (887)
... ....+.+ ....+..-.....++|+|+++.. ..+..+...+...
T Consensus 112 ~~~-~~~~~~i-----------------~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg 173 (278)
T 1iy2_A 112 MFV-GVGAARV-----------------RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 173 (278)
T ss_dssp STT-THHHHHH-----------------HHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC
T ss_pred HHh-hHHHHHH-----------------HHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC
Confidence 100 0000000 01111222234678999998421 1122333222211
Q ss_pred C--CCcEEEEEeCChhhhhh-----cCCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 149 A--SGSRIIITTRDRQLLTN-----CGVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 149 ~--~gsrIiiTTR~~~v~~~-----~~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
. ....++.||..+.+... ...+..++++..+.++-.+++..++-+.....+. ....++..+.|..
T Consensus 174 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 174 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 1 22345556666554321 1345688999999999888888766322111111 1234666777765
No 235
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.25 E-value=0.00095 Score=70.42 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=26.3
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
...+.+.++|++|+|||+||+++++.....|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3457889999999999999999999886554
No 236
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.19 E-value=0.001 Score=80.28 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=82.9
Q ss_pred CCcccccccHHHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHH
Q 045202 19 NDLVGVELPMKEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDL 91 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l 91 (887)
..++|.+..++.+...+.... .....+.++|.+|+|||++|+++.+.....-...+.+. ..+........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468999999988887776422 11236999999999999999999997643322233331 11111111100
Q ss_pred HHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH--HHHHHHhcCCCC-----------CCCCcEEEEEe
Q 045202 92 RQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP--RQIEFLVGRLDL-----------FASGSRIIITT 158 (887)
Q Consensus 92 ~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~--~~~~~l~~~~~~-----------~~~gsrIiiTT 158 (887)
.......+++ ...-+|+||+++.. +....|...+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0111122222 12338999999743 333333322211 12356888888
Q ss_pred CCh-----hh----hhh------cCCCceEecCCCChHHHHHHHHHhh
Q 045202 159 RDR-----QL----LTN------CGVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 159 R~~-----~v----~~~------~~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
... .+ ... ...+.++.+.+++.++-.+++...+
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 731 11 011 1234689999999998888876654
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.15 E-value=0.0016 Score=73.43 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=94.3
Q ss_pred CCCCCCcccccccHHHHHHhHhc---C-------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHh
Q 045202 15 QSETNDLVGVELPMKEIESLLRS---G-------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEE 84 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~ 84 (887)
....++++|.+..++++.++... . ..-.+-|.|+|.+|+||||||+++.......| +.+. ......
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---i~i~-g~~~~~ 102 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---ITAS-GSDFVE 102 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---EEEE-GGGGTS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-hhHHHH
Confidence 34557899999888877765432 1 01123489999999999999999998765332 2221 111111
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC----CceEEEEEecCCCH----------------HHHHHHhcC
Q 045202 85 TGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT----RKKVLIVFYDVNHP----------------RQIEFLVGR 144 (887)
Q Consensus 85 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~----~kk~LiVlDdv~~~----------------~~~~~l~~~ 144 (887)
.+ . ......++..++ ....++++|+++.. ..+..+...
T Consensus 103 ~~-~---------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~ 160 (499)
T 2dhr_A 103 MF-V---------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 160 (499)
T ss_dssp SC-T---------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHH
T ss_pred hh-h---------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHH
Confidence 00 0 001111222221 23478999999521 112333333
Q ss_pred CCCC--CCCcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCCh
Q 045202 145 LDLF--ASGSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVP 216 (887)
Q Consensus 145 ~~~~--~~gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlP 216 (887)
+..+ ..+..|+.||..+.+.... ..+..+.++..+.++-.+++..++-+.....+. ....++..+.|..
T Consensus 161 Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred hcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 3211 2344566677766553211 235688999999999899888766322111111 1234566666765
No 238
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.09 E-value=0.0035 Score=65.27 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=82.2
Q ss_pred CCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhc
Q 045202 17 ETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEET 85 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~ 85 (887)
..+++.|.+...++|.+.+.. +-.-.+-++++|++|+||||||+++....... .+.+... .....
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~-~l~~~ 83 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVKGP-ELLNM 83 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEETT-TTCSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcH-HHHhh
Confidence 446788999888888765421 10112239999999999999999999875432 2333211 11000
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHh-hCCceEEEEEecCCCHH-------------HHHHHhcCCCC--CC
Q 045202 86 GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKR-LTRKKVLIVFYDVNHPR-------------QIEFLVGRLDL--FA 149 (887)
Q Consensus 86 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~-l~~kk~LiVlDdv~~~~-------------~~~~l~~~~~~--~~ 149 (887)
+ ..+..+. ...+.+. -...+.++++|+++... ....+...+.. ..
T Consensus 84 ~-~~~~~~~------------------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 84 Y-VGESERA------------------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp T-THHHHHH------------------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred h-hhHHHHH------------------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 0 1111110 1111111 12346788889886420 11122222211 12
Q ss_pred CCcEEEEEeCChhhhhhc-----CCCceEecCCCChHHHHHHHHHhh
Q 045202 150 SGSRIIITTRDRQLLTNC-----GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 150 ~gsrIiiTTR~~~v~~~~-----~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
...-++.+|..+.+.... .-+..+.++..+.++-.+++..+.
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 334566677766654321 346788999999999999998765
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.93 E-value=0.0031 Score=76.01 Aligned_cols=152 Identities=16% Similarity=0.179 Sum_probs=86.1
Q ss_pred CCCCcccccccHHHHHHhHhc-----------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhc
Q 045202 17 ETNDLVGVELPMKEIESLLRS-----------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEET 85 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~ 85 (887)
..++++|.+..+++|.+++.. +-.....|.|+|.+|+||||||+++.......| +.+ +..+....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhh
Confidence 346799999999999888753 122345799999999999999999988765443 222 11111110
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCH----------------HHHHHHhcCCCCCC
Q 045202 86 GRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHP----------------RQIEFLVGRLDLFA 149 (887)
Q Consensus 86 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~----------------~~~~~l~~~~~~~~ 149 (887)
. ..+..+. ....+.........++++|+++.. .++-.+..... ..
T Consensus 278 ~-~g~~~~~-----------------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~ 338 (806)
T 1ypw_A 278 L-AGESESN-----------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QR 338 (806)
T ss_dssp S-TTHHHHH-----------------HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TT
T ss_pred h-hhhHHHH-----------------HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cc
Confidence 0 0000000 011122222345689999998421 11222222222 12
Q ss_pred CCcEEEEEeCChhhhh-hc----CCCceEecCCCChHHHHHHHHHhh
Q 045202 150 SGSRIIITTRDRQLLT-NC----GVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 150 ~gsrIiiTTR~~~v~~-~~----~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
.+-.||.||....-.. .. ..+..+.+...+.++-.+++..++
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 3455666666543222 11 123567888889999999888766
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.92 E-value=0.0028 Score=72.82 Aligned_cols=50 Identities=28% Similarity=0.284 Sum_probs=36.2
Q ss_pred cccccccHHHHHHhHhc----CCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 21 LVGVELPMKEIESLLRS----GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~~----~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
++|.+.-.+.+.+.+.. ....-..+.++|.+|+||||+|+++.......|
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 67877766666544331 112345899999999999999999999775544
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.77 E-value=0.0025 Score=69.94 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=38.5
Q ss_pred CCcccccccHHHHHHhHhc----------------------------CCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 19 NDLVGVELPMKEIESLLRS----------------------------GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~----------------------------~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
+.++|.+..++.|...+.. .......+.++|++|+||||+|+++.+.....|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3689999888888877620 011234588999999999999999998774443
No 242
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.74 E-value=0.0013 Score=64.06 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=7.2
Q ss_pred CCCCCcEEEcCCCCCc
Q 045202 601 LLSSVRELHLNGNNFE 616 (887)
Q Consensus 601 ~l~~L~~L~L~~n~l~ 616 (887)
.-+.|+.|+|++|.|.
T Consensus 96 ~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLT 111 (197)
T ss_dssp HCSSCCEEECCSSBCC
T ss_pred cCCccCeEecCCCcCC
Confidence 3344444444444443
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.63 E-value=0.0023 Score=77.20 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=38.2
Q ss_pred CCcccccccHHHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 19 NDLVGVELPMKEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+.++|.+..++.+...+.... .....+.++|.+|+|||++|+++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 458899998888877765311 1234789999999999999999998773
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.56 E-value=0.0034 Score=66.55 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCCccccc----ccHHHHHHhHhcCCC-CeeEEEEEcCCCcchHHHHHHHHHHHh-cccceEEEc
Q 045202 18 TNDLVGVE----LPMKEIESLLRSGST-NVCTLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFA 76 (887)
Q Consensus 18 ~~~~vGr~----~~~~~l~~~L~~~~~-~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 76 (887)
.+++++.+ ..++.+.+++..... ....+.|||.+|+|||+||+++++... .+-..+.++
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 35666543 233345556654222 246789999999999999999999876 554444555
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.54 E-value=0.013 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37999999999999999999 54
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.27 E-value=0.0089 Score=72.91 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=38.1
Q ss_pred CcccccccHHHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 20 DLVGVELPMKEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.++|.+..++++...+.... .....+.|+|..|+|||++|+++.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 57999998888887775321 1235789999999999999999998764
No 247
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.22 E-value=0.0048 Score=59.82 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=68.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCC-----------CCccc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVK-----------SFPNI 111 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~-----------~~~~~ 111 (887)
..|-|++-.|.||||.|-...-+...+--.+.++.-... ....+-..+.+.+--++..-...- .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-TWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-SSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-CCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 456777777899999999988876655444555522111 012222233333200000000000 00122
Q ss_pred chHHHHHhhCCceE-EEEEecCCC--------HHHHHHHhcCCCCCCCCcEEEEEeCChhhhhhcCCCceEecCCC
Q 045202 112 GLNFQSKRLTRKKV-LIVFYDVNH--------PRQIEFLVGRLDLFASGSRIIITTRDRQLLTNCGVDEKYQMKEL 178 (887)
Q Consensus 112 ~~~~~~~~l~~kk~-LiVlDdv~~--------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~v~~L 178 (887)
+....++.+...+| |||||++.. .+++-.+... .....-||+|+|...-.-.--+|.+-++...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 34455666665555 999999832 2333333332 2356779999998644322225566666654
No 248
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.20 E-value=0.0026 Score=61.96 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=36.1
Q ss_pred cCCCcccEEecccCCCCC-----ccccccCCCCCcEEEcCCC---CCc-----ccchhhhcCCCccEeecccc
Q 045202 577 DGLQNLLDLSLNDCCIME-----LPESLGLLSSVRELHLNGN---NFE-----RIPESIIQLSNLKSLFIRYC 636 (887)
Q Consensus 577 ~~l~~L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~L~~n---~l~-----~lp~~l~~l~~L~~L~L~~c 636 (887)
..-+.|+.|+|++|.|.. +-+.+..-+.|++|+|++| .+. .+-..+..-+.|+.|+++.|
T Consensus 95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 334556666666666653 4445555666777777654 333 23345556677777877765
No 249
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.92 E-value=0.032 Score=56.93 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=25.7
Q ss_pred HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 31 IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 31 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
+..+|.........|.++|++|+|||++|.++.+.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44444432133456999999999999999999885
No 250
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.85 E-value=0.011 Score=53.55 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=38.4
Q ss_pred cEEecccCCCC--CccccccCCCCCcEEEcCCCCCcccch-hhhcCCCccEeeccccc
Q 045202 583 LDLSLNDCCIM--ELPESLGLLSSVRELHLNGNNFERIPE-SIIQLSNLKSLFIRYCE 637 (887)
Q Consensus 583 ~~L~Ls~n~l~--~lp~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~c~ 637 (887)
..++.+++.++ .+|..+ .++|+.|+|++|+|+.+|. .+..+++|+.|+|++|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 35677777777 677543 3468888888888888875 45677888888888875
No 251
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.70 E-value=0.0038 Score=65.43 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
+++.|+|++|+||||||.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 56789999999999999999876
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.70 E-value=0.01 Score=59.82 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=26.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.+++|.|.+|+|||||++.+.......-..+.|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5899999999999999999987554333344555
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.61 E-value=0.0039 Score=62.38 Aligned_cols=110 Identities=15% Similarity=0.009 Sum_probs=57.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCC--CCCcccchHHHHHhh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNV--KSFPNIGLNFQSKRL 120 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~--~~~~~~~~~~~~~~l 120 (887)
.++.|+|..|+||||+|..+..+...+-..+..+.-..+. . +. .++++.++..... .....+..+.+++.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SI----RNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GC----SSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HH----HHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 6889999999999999988888766554333333111000 0 10 1222222111100 011122233344444
Q ss_pred CCce-EEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 045202 121 TRKK-VLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDRQ 162 (887)
Q Consensus 121 ~~kk-~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 162 (887)
.+.+ -+||+|.+.. .++++.+....+ .|-.||+|.++.+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 3344 4999999964 345444432111 2788999998654
No 254
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.59 E-value=0.0081 Score=65.41 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=39.1
Q ss_pred CcccccccHHHHHHhHh-------------cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 20 DLVGVELPMKEIESLLR-------------SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 20 ~~vGr~~~~~~l~~~L~-------------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.++|.+..++++...+. ......+.|.++|++|+|||++|+++++.....|
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~ 79 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPF 79 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 47999999999888772 1111335689999999999999999998774433
No 255
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.53 E-value=0.021 Score=60.89 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=55.3
Q ss_pred hHHHHHHhhcccCCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHH
Q 045202 2 IVNAILKRLDDTFQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVRE 81 (887)
Q Consensus 2 i~~~~~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 81 (887)
++.++..++..........+.|...-...|..++. +-..-.++.|.|.+|+||||+|..+...+..+=..++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f----- 80 (338)
T 4a1f_A 7 VLESAMDLITENQRKGSLEVTGIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF----- 80 (338)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE-----
T ss_pred HHHHHHHHHHHHHhcCCCCcCcccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-----
Confidence 34444444443221112345566666667766663 223335799999999999999999887665443455666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 045202 82 AEETGRLGDLRQQLLSTL 99 (887)
Q Consensus 82 ~s~~~~~~~l~~~il~~l 99 (887)
|-+-+..++...++...
T Consensus 81 -SlEms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 81 -SLEMSAEQLALRALSDL 97 (338)
T ss_dssp -ESSSCHHHHHHHHHHHH
T ss_pred -eCCCCHHHHHHHHHHHh
Confidence 33445567777666543
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.50 E-value=0.02 Score=67.95 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=77.2
Q ss_pred CCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-HhcC
Q 045202 19 NDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EETG 86 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~~~ 86 (887)
+++.|.+...++|.+.+... ....+-|.++|++|+|||.+|+++.++....|- -+ ...+. +...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~---~v-~~~~l~s~~v 552 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI---SI-KGPELLTMWF 552 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEE---EC-CHHHHHTTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceE---Ee-ccchhhcccc
Confidence 56778888888887765431 122456789999999999999999997654432 11 11111 1110
Q ss_pred C-HHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCCceEEEEEecCCCHH----------------HHHHHhcCCCCCC
Q 045202 87 R-LGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTRKKVLIVFYDVNHPR----------------QIEFLVGRLDLFA 149 (887)
Q Consensus 87 ~-~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~kk~LiVlDdv~~~~----------------~~~~l~~~~~~~~ 149 (887)
+ -....+ ......-+..+.+|++|+++..- ....++..++...
T Consensus 553 Gese~~vr--------------------~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 553 GESEANVR--------------------EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp SSCHHHHH--------------------HHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred chHHHHHH--------------------HHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 0 011111 12222234568999999986320 1222332222222
Q ss_pred C-CcEEEE-EeCChhh-----hhhcCCCceEecCCCChHHHHHHHHHhh
Q 045202 150 S-GSRIII-TTRDRQL-----LTNCGVDEKYQMKELVHADALKLFSRHA 191 (887)
Q Consensus 150 ~-gsrIii-TTR~~~v-----~~~~~~~~~~~v~~L~~~~a~~Lf~~~a 191 (887)
. ...+|| ||-.+.. .+.-.-+..+.++..+.++-.++|..+.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2 223333 4443322 2211346788898888888888887666
No 257
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.49 E-value=0.025 Score=56.27 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=25.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
-.++.|+|.+|+||||||..+.. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 35899999999999999999887 2234556663
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.47 E-value=0.11 Score=55.89 Aligned_cols=165 Identities=10% Similarity=-0.007 Sum_probs=100.9
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh-cccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKS 107 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~ 107 (887)
+++.+.+. + .-.++..++|..|.||++.|+++.+.+. ..|+....+. + ....++.++...+..
T Consensus 7 ~~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~---------- 70 (343)
T 1jr3_D 7 EQLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DPNTDWNAIFSLCQA---------- 70 (343)
T ss_dssp TTHHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CTTCCHHHHHHHHHH----------
T ss_pred HHHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cCCCCHHHHHHHhcC----------
Confidence 34455554 2 2446889999999999999999988653 3443211111 1 112444444333211
Q ss_pred CcccchHHHHHhhCCceEEEEEecCCC---HHHHHHHhcCCCCCCCCcEEEEEeCC-------hhhhhhc-CCCceEecC
Q 045202 108 FPNIGLNFQSKRLTRKKVLIVFYDVNH---PRQIEFLVGRLDLFASGSRIIITTRD-------RQLLTNC-GVDEKYQMK 176 (887)
Q Consensus 108 ~~~~~~~~~~~~l~~kk~LiVlDdv~~---~~~~~~l~~~~~~~~~gsrIiiTTR~-------~~v~~~~-~~~~~~~v~ 176 (887)
.-+-+++-++|+|+++. .+.++.+...+....+++.+|++|.. ..+.... .....++..
T Consensus 71 ----------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 71 ----------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp ----------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred ----------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 12345566788899865 34566666555555578888877643 2344442 334689999
Q ss_pred CCChHHHHHHHHHhhcCCCCCCccHHHHHHHHHHhhCCChHHHHH
Q 045202 177 ELVHADALKLFSRHAFGGDHPYESHTELTCKTIKYARGVPLALKV 221 (887)
Q Consensus 177 ~L~~~~a~~Lf~~~af~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 221 (887)
+++.++..+.+...+-..+. .--.+.+..+++.++|...++..
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 99999988877776622221 12245677888999998877653
No 259
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.36 E-value=0.011 Score=63.52 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=41.4
Q ss_pred CCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccc
Q 045202 17 ETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSA 71 (887)
Q Consensus 17 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~ 71 (887)
..+.++|++..++.+...+..+ .-+.++|.+|+|||++|+++.+.....|.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred hccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 3468999999998888877653 24889999999999999999987765543
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.36 E-value=0.0078 Score=57.90 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|++|+||||+|+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988764
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.33 E-value=0.019 Score=56.48 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=33.5
Q ss_pred ccccHHHHHHhHhcC-CCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 24 VELPMKEIESLLRSG-STNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 24 r~~~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
|+..++++.+.+... .....+|+|.|..|.||||+|+.+...+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667777766643 23457999999999999999999987653
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.31 E-value=0.015 Score=57.61 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+++|.+.+......-.+|+|+|..|.|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455555443233457999999999999999999988654
No 263
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.26 E-value=0.0057 Score=58.65 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.7
Q ss_pred eEEEEEcCCCcchHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIF 63 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~ 63 (887)
.+++|+|..|.|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 589999999999999999643
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.23 E-value=0.02 Score=60.29 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHhHhcCC------CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 28 MKEIESLLRSGS------TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 28 ~~~l~~~L~~~~------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.++|.+.+.... ....+|+|+|.+|+||||++..+...+...-..+.++
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 84 KEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 455666664321 2357999999999999999999988765443333333
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.23 E-value=0.046 Score=57.97 Aligned_cols=86 Identities=14% Similarity=0.145 Sum_probs=51.9
Q ss_pred hHHHHHHhhcccCCCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHH
Q 045202 2 IVNAILKRLDDTFQSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVRE 81 (887)
Q Consensus 2 i~~~~~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~ 81 (887)
++.++...+... .....|...-+..|..++ .+-..-.++.|.|.+|+||||+|..+...+..+-..++|+
T Consensus 33 ~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~----- 102 (315)
T 3bh0_A 33 ALVTVYEEIESA----DGNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH----- 102 (315)
T ss_dssp HHHHHHHHHHTC----SSSCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE-----
T ss_pred HHHHHHHHHHhc----cCCCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-----
Confidence 344555555433 122334445555565555 2223335899999999999999999887654443566676
Q ss_pred HHhcCCHHHHHHHHHHH
Q 045202 82 AEETGRLGDLRQQLLST 98 (887)
Q Consensus 82 ~s~~~~~~~l~~~il~~ 98 (887)
+-+.+..++.+.++..
T Consensus 103 -slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 103 -SLEMGKKENIKRLIVT 118 (315)
T ss_dssp -ESSSCHHHHHHHHHHH
T ss_pred -ECCCCHHHHHHHHHHH
Confidence 3334555666666554
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.13 E-value=0.011 Score=56.26 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|+.|+||||+|+.+..+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988754
No 267
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.01 E-value=0.013 Score=57.59 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
-.+|.|+|+.|+||||+|+.+..+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999988764
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.94 E-value=0.025 Score=59.08 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=25.3
Q ss_pred CCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 39 STNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 39 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.....+|+|+|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 455679999999999999999999876543
No 269
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.94 E-value=0.021 Score=61.57 Aligned_cols=110 Identities=14% Similarity=0.078 Sum_probs=65.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceE-EEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGS-YFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT 121 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (887)
.+++|+|..|.||||+.+.+...+....... +.+.+..+....... ....+.............+.+.|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeeeccccCCHHHHHHHHhh
Confidence 4899999999999999999988665443333 333221110000000 000000000111223457888899
Q ss_pred CceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhhh
Q 045202 122 RKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQLL 164 (887)
Q Consensus 122 ~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 164 (887)
..+=+|++|++.+.+.++.+... ...|--||+||-+...+
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 99999999999987777665443 22466688999876654
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.94 E-value=0.014 Score=56.55 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+.|.|+|+.|+||||+|+.+..+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988754
No 271
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.90 E-value=0.039 Score=49.98 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=41.9
Q ss_pred EEEecCCCCC--CCCCCCCCCCccEEEcCCCCCccch-hhhcCCccCceeecCcCc
Q 045202 349 YLHWHRYPLK--SLPSNIHPEKLVLLKMPHSNIEQVF-DSVQHYLKLNQIITAAFN 401 (887)
Q Consensus 349 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~l~~~~ 401 (887)
.++.+++.++ .+|..+ +.+|+.|+|++|.|+.++ ..+..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 6788888988 899775 567999999999999987 446677778877777765
No 272
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.79 E-value=0.02 Score=61.01 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=33.4
Q ss_pred cccccHHHHHHhHhc--CCCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 23 GVELPMKEIESLLRS--GSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 23 Gr~~~~~~l~~~L~~--~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
+.+.-.+++.+.+.. .......|.|+|+.|+||||+|+.+...+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444555555432 233456799999999999999999998766554
No 273
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.57 E-value=0.02 Score=54.38 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|.|+.|+||||+|+.+.++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988754
No 274
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.50 E-value=0.016 Score=62.47 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=36.0
Q ss_pred CCCCCCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 15 QSETNDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 15 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+...++++|.+..++.+...+... ...-+.|+|.+|+|||++|+++.+...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 344567999988655544433321 122388999999999999999998654
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.40 E-value=0.017 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|+|+|+.|+||||+|+.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988654
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.37 E-value=0.018 Score=55.45 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+.|.|+|++|+||||+|+.+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999998765
No 277
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.35 E-value=0.026 Score=54.65 Aligned_cols=24 Identities=25% Similarity=-0.090 Sum_probs=19.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.++.|+|..|+||||+|..+..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999996666554
No 278
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.29 E-value=0.036 Score=53.83 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.+|.|.|+.|+||||+|+.+.++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.27 E-value=0.024 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 280
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.26 E-value=0.05 Score=58.37 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=38.4
Q ss_pred cccccHHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 23 GVELPMKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 23 Gr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
....-..+|-.+|. .+-..-+++.|+|.+|+||||||..+.......-..++|+.
T Consensus 41 ~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 41 VIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 33444566777665 22233468999999999999999999887654434466773
No 281
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.26 E-value=0.064 Score=59.31 Aligned_cols=27 Identities=26% Similarity=0.668 Sum_probs=23.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.++|+|.+|+||||||+.+......++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 589999999999999999988765544
No 282
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.21 E-value=0.057 Score=58.32 Aligned_cols=57 Identities=23% Similarity=0.206 Sum_probs=39.0
Q ss_pred cccccccHHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 21 LVGVELPMKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
.-+...-...|..+|. .+-..-+++.|+|.+|+||||||..+...+...-..++|++
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3344445666776665 22233357899999999999999998876654444677874
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.21 E-value=0.024 Score=55.17 Aligned_cols=23 Identities=43% Similarity=0.411 Sum_probs=21.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|+.|+||||+++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57999999999999999999764
No 284
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.20 E-value=0.019 Score=64.75 Aligned_cols=45 Identities=20% Similarity=0.123 Sum_probs=37.9
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+.+||.+..++.+...+..+ .-|.++|.+|+|||+||+++.+...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 57999999998888777644 3588999999999999999988653
No 285
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.19 E-value=0.022 Score=54.63 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|.|.|++|+||||+|+.+..+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988754
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.19 E-value=0.037 Score=54.32 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.-.+|+|+|+.|.||||+|+.+.....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998765
No 287
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.11 E-value=0.026 Score=55.47 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999988765
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.11 E-value=0.04 Score=52.22 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=24.8
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..++++|.|..|+||||++..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877655
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.09 E-value=0.024 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.489 Sum_probs=22.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+|+|.|+.|+||||+|+.+....
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 290
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.07 E-value=0.044 Score=53.36 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+..+..++.. -+..+.+.|+|++|+||||+|.++.+.+..
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556666653 222346999999999999999999887643
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.04 E-value=0.032 Score=54.26 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|.|.|++|+||||+|+.+..+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999988653
No 292
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.04 E-value=0.027 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999987643
No 293
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.02 E-value=0.043 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
-.+|.|.|++|+||||+|+.+......
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999987654
No 294
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.00 E-value=0.029 Score=54.40 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=23.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.+|.|.|++|+||||+|+.+.++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999987653
No 295
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.00 E-value=0.041 Score=60.74 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=39.3
Q ss_pred CCcccccccHHHHHHhHhcC------------CCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 19 NDLVGVELPMKEIESLLRSG------------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~------------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
++++|.+..++.+...+... ....+-|.++|++|+||||+|+++.......|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 47899988888887666321 11235688999999999999999999775554
No 296
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.96 E-value=0.025 Score=54.65 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|+|.|++|+||||+|+.+..+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988654
No 297
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.92 E-value=0.1 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=20.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|.|||||.+.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998764
No 298
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.91 E-value=0.032 Score=57.09 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=23.7
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
....+|+|.|+.|+||||+|+.+..+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988654
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.83 E-value=0.036 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
-.+|+|+|+.|.||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998764
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.83 E-value=0.026 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=23.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
|.|.|+|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999987654444
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.82 E-value=0.034 Score=56.92 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=22.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|+.|+||||+|+++..+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988654
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.72 E-value=0.038 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
-.+|+|.|+.|.||||+|+.+....
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 303
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.72 E-value=0.039 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.71 E-value=0.036 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
...|+|+|+.|+||||+|+.+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999876
No 305
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.70 E-value=0.03 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|+.|+||||+|+.+.++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988654
No 306
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.68 E-value=0.037 Score=53.93 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|.|+.|+||||+|+.+.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987653
No 307
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.67 E-value=0.062 Score=56.96 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=27.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..++|+|+|.+|+||||++..+...+...-..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357999999999999999999988665443333343
No 308
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.65 E-value=0.027 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=18.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|+.|+||||+|+.+.++..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987654
No 309
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.58 E-value=0.3 Score=55.42 Aligned_cols=52 Identities=8% Similarity=-0.060 Sum_probs=37.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEccccHHHHhcCCHHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFANNVREAEETGRLGDLRQQLLSTLL 100 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~ 100 (887)
.++.|.|.+|+||||+|..+...+..+ -..++|+ +-+.+..++.+.++....
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~------s~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA------MLEESVEETAEDLIGLHN 295 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE------ESSSCHHHHHHHHHHHHT
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE------eccCCHHHHHHHHHHHHc
Confidence 578999999999999999988876654 3456676 334455677776665543
No 310
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.58 E-value=0.13 Score=57.16 Aligned_cols=70 Identities=17% Similarity=0.101 Sum_probs=43.0
Q ss_pred ccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHH
Q 045202 22 VGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLST 98 (887)
Q Consensus 22 vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~ 98 (887)
.|...-+..|-.++. +-..-.++.|.|.+|+||||+|..+...+..+-..++|+ |-.-+..++...++..
T Consensus 178 ~gi~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f------SlEms~~ql~~R~~~~ 247 (444)
T 3bgw_A 178 TGVPSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH------SLEMGKKENIKRLIVT 247 (444)
T ss_dssp CSBCCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE------CSSSCTTHHHHHHHHH
T ss_pred CCcCCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE------ECCCCHHHHHHHHHHH
Confidence 344444455555552 223335899999999999999999888765443355666 2233444555555543
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.54 E-value=0.039 Score=53.90 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|+|.|+.|+||||+|+.+.++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988754
No 312
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.54 E-value=0.048 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.037 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
....|+|.|++|+||||+|+.+.++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.50 E-value=0.041 Score=53.41 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|.|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.49 E-value=0.05 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
...+|+|.|+.|+||||+|+.+.++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.49 E-value=0.034 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.++|.|+|++|+||||+++.+..+..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999988653
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.47 E-value=0.044 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..|++.|+.|+||||+|+.+.++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.47 E-value=0.034 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
++++|.|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999988654
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.46 E-value=0.042 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+|+|.|+.|+||||+|+.+.++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 319
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.46 E-value=0.059 Score=56.96 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=24.2
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
++.+||+|+|-|||||||.|..+.--+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~ 75 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL 75 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC
Confidence 467999999999999999988777655443
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.43 E-value=0.045 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999775
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.37 E-value=0.041 Score=54.15 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~ 64 (887)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999977
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.33 E-value=0.045 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 323
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.32 E-value=0.28 Score=48.24 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=46.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHH-HhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREA-EETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~-s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
+|.|.|++|+||||.|+.+.++.. |....-=+.+|+. .....+....+.++.+ ... ...+.....+.+++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~~~istGdllR~~i~~~t~lg~~~~~~~~~----G~l-vpd~iv~~lv~~~l~~ 74 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAVQKGTPLGKKAKEYMER----GEL-VPDDLIIALIEEVFPK 74 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH----TCC-CCHHHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--CeEEcHHHHHHHHHHhcChhhhhHHHHHhc----CCc-CCHHHHHHHHHHhhcc
Confidence 477899999999999999987642 2111110111221 1111222222222221 111 1122345667777765
Q ss_pred ceEEEEEecC-CCHHHHHHH
Q 045202 123 KKVLIVFYDV-NHPRQIEFL 141 (887)
Q Consensus 123 kk~LiVlDdv-~~~~~~~~l 141 (887)
.+. +|||+. .+..|.+.+
T Consensus 75 ~~~-~ilDGfPRt~~Qa~~l 93 (206)
T 3sr0_A 75 HGN-VIFDGFPRTVKQAEAL 93 (206)
T ss_dssp SSC-EEEESCCCSHHHHHHH
T ss_pred CCc-eEecCCchhHHHHHHH
Confidence 554 688997 566665544
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.31 E-value=0.058 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|.|+.|+||||+|+.+.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987653
No 325
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.30 E-value=0.048 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|.|.|++|+||||+|+.+..+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988653
No 326
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.26 E-value=0.069 Score=52.85 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=24.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..+|+|.|+.|+||||+|+.+.++....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999876544
No 327
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.20 E-value=0.045 Score=53.78 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+++|+|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999998753
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.17 E-value=0.054 Score=53.51 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.+|.|.|+.|+||||+|+.+.++.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999998765443
No 329
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.16 E-value=0.05 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.5
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
...+|+|.|+.|.||||+|+.+.++
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998775
No 330
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.12 E-value=0.047 Score=53.70 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+|+|+|+.|+||||+|+.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 331
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.12 E-value=0.042 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|+|+|+.|.||||+++.+.....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999988664
No 332
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.07 E-value=0.032 Score=59.74 Aligned_cols=26 Identities=23% Similarity=0.031 Sum_probs=22.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
..++|+|.+|+|||||++.+.+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 47999999999999999999886643
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.07 E-value=0.049 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
-.+|+|+|+.|+||||+++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988654
No 334
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.06 E-value=0.054 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 335
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.05 E-value=0.055 Score=53.47 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
..+|+|.|+.|+||||+|+.+.++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999987654
No 336
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.03 E-value=0.11 Score=54.35 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.-++++++|.+|+||||++..+.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999988665
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.96 E-value=0.054 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..|.|.|+.|+||||+|+.+.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999988654
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.96 E-value=0.057 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
...+|+|+|+.|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998764
No 339
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.93 E-value=0.062 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.++|+|..|+|||||++.+...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 340
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.90 E-value=0.18 Score=54.03 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc------ccceEEEcc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR------HSAGSYFAN 77 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 77 (887)
..|..+|..+-..-.++.|+|.+|+||||||..+...... .-..++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4444555422234468999999999999999998876422 234567773
No 341
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.89 E-value=0.097 Score=56.80 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=61.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEE-EccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSY-FANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRL 120 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~-~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l 120 (887)
-.+++|+|..|.||||+++.+...+.....+.+ ++.+..+ .... ..+ ....+.....+.......++..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e----~~~~---~~~--~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE----YVFK---HKK--SIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC----SCCC---CSS--SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh----hhhc---cCc--eEEEeeecCCCHHHHHHHHHHHh
Confidence 358999999999999999999886654433444 3321100 0000 000 00000000001223456777888
Q ss_pred CCceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 045202 121 TRKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQ 162 (887)
Q Consensus 121 ~~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 162 (887)
...+=+|++|.+.+.+.+...... ...|-.|+.|+-+..
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~---~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNT 245 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHH---HTTTCEEEECCCCCS
T ss_pred hhCcCEEEECCCCCHHHHHHHHHH---HhcCCEEEEEECcch
Confidence 777889999999876665443332 134666777776544
No 342
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.87 E-value=0.21 Score=52.12 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=32.5
Q ss_pred HHHHHhHh---cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc--cceEEEcc
Q 045202 29 KEIESLLR---SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH--SAGSYFAN 77 (887)
Q Consensus 29 ~~l~~~L~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~ 77 (887)
.+|-..|. .+.-...++-|+|.+|+||||||-.+......+ -..++|++
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 44555555 122112368999999999999998887765544 24567873
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.86 E-value=0.052 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 344
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.85 E-value=0.045 Score=63.84 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=39.1
Q ss_pred CCcccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 19 NDLVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 19 ~~~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
++++|.+..++.+...+..+ ..+.|+|.+|+||||||+++...+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 56899998888888887754 479999999999999999999865443
No 345
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.85 E-value=0.068 Score=52.81 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.-.+|+|+|..|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 346
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.85 E-value=0.056 Score=52.69 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.-++|+|+|+.|+|||||++++.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987643
No 347
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.81 E-value=0.096 Score=54.64 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
...+|.|.|++|+||||+|+++..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 348
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.80 E-value=0.054 Score=55.38 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|+|.|+.|.||||+|+.+..++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999987654
No 349
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.74 E-value=0.061 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|+|+.|+||||+++.+.++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.69 E-value=0.063 Score=55.18 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|++|+||||+|+.+..++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988754
No 351
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.65 E-value=0.083 Score=55.81 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
....+|||.|..|+||||+|+.+.....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4466999999999999999999877554
No 352
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.59 E-value=0.25 Score=55.03 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=45.3
Q ss_pred cccccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEccccHHHHhcCCHHHHHHHHHHHH
Q 045202 21 LVGVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFANNVREAEETGRLGDLRQQLLSTL 99 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~~~~l~~~il~~l 99 (887)
.-|...-+..|..++ .+-..-.++.|.|.+|+||||+|..+...+... -..++|+ +-..+..++...++...
T Consensus 180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~------slE~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY------SLEMPAAQLTLRMMCSE 252 (444)
T ss_dssp ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE------ESSSCHHHHHHHHHHHH
T ss_pred CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE------ECCCCHHHHHHHHHHHH
Confidence 344444455565555 333334589999999999999999988766542 3345666 23345567777766554
Q ss_pred h
Q 045202 100 L 100 (887)
Q Consensus 100 ~ 100 (887)
.
T Consensus 253 ~ 253 (444)
T 2q6t_A 253 A 253 (444)
T ss_dssp T
T ss_pred c
Confidence 3
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.51 E-value=0.079 Score=54.17 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
...+|.|.|++|.||||+|+.+..+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988654
No 354
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.49 E-value=0.14 Score=55.30 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=28.9
Q ss_pred HHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 30 EIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 30 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
++...+........+|+|+|.+|+|||||+..+......
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344444433456789999999999999999998776543
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.44 E-value=0.056 Score=52.98 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998754
No 356
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.41 E-value=0.076 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+|+|.|+.|+||||+|+.+..+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988654
No 357
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.41 E-value=0.075 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.|+|.|+.|+||||+|+.+.++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999887643
No 358
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.39 E-value=0.21 Score=55.82 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=40.9
Q ss_pred cccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEccccHHHHhcCCHHHHHHHHHH
Q 045202 23 GVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH-SAGSYFANNVREAEETGRLGDLRQQLLS 97 (887)
Q Consensus 23 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~s~~~~~~~l~~~il~ 97 (887)
|...-+..|..++ .+-..-.++.|.|.+|+||||+|..+...+... -..++|+. ...+..++.+.++.
T Consensus 185 ~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s------~E~s~~~l~~r~~~ 253 (454)
T 2r6a_A 185 GIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS------LEMSAQQLVMRMLC 253 (454)
T ss_dssp SBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE------SSSCHHHHHHHHHH
T ss_pred CCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHH
Confidence 3333344444444 222233589999999999999999998876542 23456662 23334455555543
No 359
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.38 E-value=0.048 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999887643
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.37 E-value=0.062 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..|.|.|+.|+||||+|+.+.++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999998764
No 361
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.37 E-value=0.13 Score=54.73 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=32.3
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc------cceEEEcc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH------SAGSYFAN 77 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~ 77 (887)
..|..+|..+-..-.++.|+|.+|+||||+|..+...+... -..++|+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44444443221233589999999999999999988764322 24567773
No 362
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.34 E-value=0.15 Score=54.08 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.-.+++|+|..|+||||+++.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35799999999999999999998765443
No 363
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.29 E-value=0.078 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|+|.|+.|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997764
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.27 E-value=0.092 Score=52.08 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
...++|.|.|++|+||||.|+.+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998764
No 365
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.23 E-value=0.086 Score=52.16 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
-.+|.|.|+.|+||||+|+.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999988664
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.22 E-value=0.091 Score=50.36 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|+|.|+.|.||||+|+.+...+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999988653
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.20 E-value=0.068 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=22.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..|.|.|++|+||||+|+.+.++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988754
No 368
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.19 E-value=0.099 Score=51.95 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=32.3
Q ss_pred cccccHHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 23 GVELPMKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 23 Gr~~~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
+.+...+++...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred hcHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344445555555542 356899999999999999999988765444
No 369
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.08 E-value=0.14 Score=50.94 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=27.7
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
+++...+. ......|.|+|.+|+|||||+..+......
T Consensus 27 ~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 27 DKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 34444443 235688999999999999999998876433
No 370
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.98 E-value=0.083 Score=54.94 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999873
No 371
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.97 E-value=0.28 Score=56.40 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=25.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
+++.|.|.+|+||||++.++...+...-..+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 6789999999999999999988665443333333
No 372
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.97 E-value=0.088 Score=52.81 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|.|++|.||||+|+.+..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987754
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.96 E-value=0.086 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|+|.|++|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997754
No 374
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.96 E-value=0.078 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+++|+|..|.|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.88 E-value=0.083 Score=53.69 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.-.+|+|.|..|.||||+|+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998754
No 376
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.85 E-value=0.094 Score=55.36 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..-.+|+|.|..|.||||||+.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3456999999999999999999987554
No 377
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.76 E-value=0.075 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998754
No 378
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.73 E-value=0.19 Score=52.50 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=26.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..+++++|.+|+||||++..+......+-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56899999999999999999987665443334444
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.72 E-value=0.091 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+|+|.|+.|+||||+|+.+.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998865
No 380
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.71 E-value=0.095 Score=55.57 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|+|.|+.|+||||||+.+..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988654
No 381
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.70 E-value=0.15 Score=53.49 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=23.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
-.+++|+|.+|+||||+++.+.......
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 4699999999999999999998765543
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.65 E-value=0.15 Score=48.72 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
..+++|.|..|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999887654
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.65 E-value=0.098 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+|+|.|+.|+||||+|+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 384
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.62 E-value=0.096 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..|.|.|++|+||||+|+.+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 385
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.59 E-value=0.11 Score=48.77 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
-.+++|.|..|.|||||++.+..-+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3589999999999999999998865
No 386
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.57 E-value=0.19 Score=50.67 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=26.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.++.|.|.+|+||||+|..+.......-..++|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5899999999999999988876554444456666
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.47 E-value=0.1 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..|.|.|+.|+||||+|+.+.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988754
No 388
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.39 E-value=0.082 Score=55.22 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=20.2
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
...+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999987543
No 389
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.37 E-value=0.1 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+++|+|+.|+|||||++.+.....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999999999988654
No 390
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.34 E-value=0.076 Score=50.58 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=26.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc-c-ceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH-S-AGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~ 76 (887)
.+++|+|..|.|||||++.+....... + .+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 579999999999999999998765433 1 344554
No 391
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.33 E-value=0.12 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|.|.|+.|+||||+|+.+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.27 E-value=0.12 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.|.|.|+.|+||||+|+.+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 393
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.27 E-value=0.12 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.8
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
....+|+|.|+.|.||||+|+.+..+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999987653
No 394
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.25 E-value=0.25 Score=54.63 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=31.5
Q ss_pred HHHHHHhHhcCC-------CCeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 28 MKEIESLLRSGS-------TNVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 28 ~~~l~~~L~~~~-------~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
.+++.+++.... ...++|.++|.+|+||||+|..+...+..+
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 455666665321 246799999999999999999988876654
No 395
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.20 E-value=0.16 Score=53.42 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=27.1
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
...++|+|+|-||+||||+|..+...+..+-..++-+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3567899999999999999999887665543333333
No 396
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.15 E-value=0.12 Score=51.77 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=26.6
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..+..+|..+-..-.+++|+|..|+|||||++.+....
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443222233689999999999999999998743
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.08 E-value=0.15 Score=51.77 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999874
No 398
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.08 E-value=0.11 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+++|+|..|+|||||++.+.....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999987553
No 399
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.08 E-value=0.22 Score=54.74 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=27.3
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
..++|.++|.+|+||||++..+...+..+-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 357999999999999999999888665543333333
No 400
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.07 E-value=0.16 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.134 Sum_probs=23.3
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
..-++++|+|+.|.|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344689999999999999999998754
No 401
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.06 E-value=0.28 Score=51.26 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=26.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccc-eEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSA-GSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~ 76 (887)
.+++|.|.+|+|||||++.+...+...-. .+.|+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 57999999999999999999886654422 34455
No 402
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.98 E-value=0.16 Score=52.01 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=60.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcC-CHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETG-RLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLT 121 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~-~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (887)
.+++|+|..|.||||+++.+...+...+.+.+++... .+.... ... .+..+.....+.......+.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~--------~~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKK--------SIVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSS--------SEEEEEEBTTTBSCHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcc--------eeeeHHHhCCCHHHHHHHHHHHHh
Confidence 5899999999999999999988655443455444210 000000 000 000000000011223455666666
Q ss_pred CceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 122 RKKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 122 ~kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
.++=+|++|+..+.+....+... ...|.-|++||-+...
T Consensus 97 ~~p~illlDEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 67778899999766554443332 1346678888877654
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.98 E-value=0.11 Score=54.67 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|+|+.|+||||||+.+..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999988643
No 404
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.93 E-value=0.17 Score=53.92 Aligned_cols=106 Identities=13% Similarity=-0.003 Sum_probs=58.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCCCCCcccchHHHHHhhCC
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNVKSFPNIGLNFQSKRLTR 122 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~~~~l~~ 122 (887)
.+++|+|..|.|||||++.+...+.. -.+.+.+....+.... ... ..+.--. .........+.+.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~~-------~~i~~~~---ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HHK-------NYTQLFF---GGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SCS-------SEEEEEC---BTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cch-------hEEEEEe---CCChhHHHHHHHHhhh
Confidence 46999999999999999999875433 3456666433211000 000 0000000 0112234566777888
Q ss_pred ceEEEEEecCCCHHHHHHHhcCCCCCCCCcEEEEEeCChhh
Q 045202 123 KKVLIVFYDVNHPRQIEFLVGRLDLFASGSRIIITTRDRQL 163 (887)
Q Consensus 123 kk~LiVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v 163 (887)
++=+|++|++.+.+.++.+.. .. .+ +.-+|+||.....
T Consensus 240 ~p~ilildE~~~~e~~~~l~~-~~-~g-~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYNV-LC-SG-HKGTLTTLHAGSS 277 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHHH-HH-TT-CCCEEEEEECSSH
T ss_pred CCCEEEEcCCChHHHHHHHHH-Hh-cC-CCEEEEEEcccHH
Confidence 888999999987665554433 21 11 2225666655443
No 405
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.90 E-value=0.17 Score=50.96 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=32.3
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc------ccceEEEcc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR------HSAGSYFAN 77 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~ 77 (887)
..|..+|..+-..-.+++|+|.+|+||||||+.+...+.. .-..++|+.
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3444555322223358999999999999999999875322 134667774
No 406
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.86 E-value=0.17 Score=55.87 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=26.6
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.++|+|+|.+|+||||+|..+......+-..++.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46899999999999999999888665443333444
No 407
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.85 E-value=0.44 Score=52.50 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
...+|.|+|++|.||||+|+++..+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987654
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.84 E-value=0.29 Score=52.46 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
-.+++|+|..|+||||+++.+...+...
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 4699999999999999999998866543
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.80 E-value=0.09 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=15.9
Q ss_pred eEEEEEcCCCcchHHHHHHHH-HHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIF-NKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~-~~~ 66 (887)
.+++|+|+.|+||||+++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 643
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.79 E-value=0.18 Score=52.80 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
-.+++|+|..|+||||+++.+......
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999886554
No 411
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.69 E-value=0.28 Score=54.55 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=26.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
-.+++|+|..|+||||+++.+...+... .+.+++
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 4699999999999999999998866543 334444
No 412
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.63 E-value=0.13 Score=62.03 Aligned_cols=53 Identities=28% Similarity=0.303 Sum_probs=40.5
Q ss_pred CCCcccccccHHHHHHhHhcC-----------CCCeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 18 TNDLVGVELPMKEIESLLRSG-----------STNVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 18 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
.++++|.+...++|.+.+... -...+.+.++|.+|+||||||+++.......|
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 357889998888888876531 01235688999999999999999999875444
No 413
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.52 E-value=0.33 Score=53.45 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.8
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
...+|.++|.+|+||||++..+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999988766554
No 414
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.36 E-value=0.15 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCeeEEEEEcCCCcchHHHHHHHHH
Q 045202 40 TNVCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 40 ~~~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.. .+++|+|..|.|||||++.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7899999999999999999976
No 415
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.32 E-value=0.23 Score=51.12 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=25.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
++|+|.|-||+||||+|..+...+..+-..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999888665443333333
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.29 E-value=0.25 Score=64.02 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=34.8
Q ss_pred HHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 29 KEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 29 ~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.+|..+|. .+-..-+.|-|+|++|+||||||.++......+=..++|+
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi 1461 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1461 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 34555554 2223456899999999999999999988766665567777
No 417
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.26 E-value=0.16 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.-.+|||.|..|.|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446999999999999999999987654
No 418
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.24 E-value=0.43 Score=51.06 Aligned_cols=26 Identities=35% Similarity=0.152 Sum_probs=22.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
..++|+|.+|+|||+|+..+.+.+..
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhh
Confidence 35899999999999999999987653
No 419
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.23 E-value=0.11 Score=54.88 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|+|+.|+||||||..+..++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5899999999999999999987643
No 420
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.21 E-value=0.13 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.133 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998763
No 421
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.11 E-value=0.41 Score=52.77 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=26.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh-cccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 76 (887)
..++|.|.+|+|||+|+..+.+.+. .+-+.++++
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~ 188 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 188 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE
Confidence 3589999999999999999988764 333445554
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.09 E-value=0.16 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 423
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.08 E-value=0.45 Score=54.24 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=27.8
Q ss_pred HHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 29 KEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 29 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.++...|..+-..=.+++|.|..|+|||||++.++.....
T Consensus 268 ~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 268 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3444444322122358999999999999999999876543
No 424
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.04 E-value=0.36 Score=53.45 Aligned_cols=33 Identities=33% Similarity=0.648 Sum_probs=26.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHh-cccceEEEc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKIS-RHSAGSYFA 76 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~ 76 (887)
.++|.|.+|+|||+|+..+.+.+. .+-+.++|+
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred eEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 489999999999999999988764 344566665
No 425
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.94 E-value=0.27 Score=50.26 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999987655
No 426
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.93 E-value=0.15 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=20.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999865
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.84 E-value=0.29 Score=51.87 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=27.3
Q ss_pred HHHHHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 28 MKEIESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 28 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
...|..+|..+-..-.++.|+|.+|+||||+|..+...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555422223468999999999999999998765
No 428
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.83 E-value=0.24 Score=48.99 Aligned_cols=29 Identities=17% Similarity=0.029 Sum_probs=23.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcc-cce
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRH-SAG 72 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~-f~~ 72 (887)
.|.+.|.||+||||+|-.+......+ ++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V 37 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRV 37 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCE
Confidence 47889999999999998888866544 443
No 429
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.81 E-value=0.15 Score=50.87 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.81 E-value=0.17 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+|.|.|+.|+||||||..+..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 579999999999999999998754
No 431
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.77 E-value=0.39 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.++.|+|.+|+||||||..+...+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999887554
No 432
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.76 E-value=0.19 Score=49.30 Aligned_cols=25 Identities=16% Similarity=0.103 Sum_probs=23.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|+.|.||||+|+.+.+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999865
No 433
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.69 E-value=0.26 Score=51.54 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=24.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..+++|+|.+|+||||+|..+.......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999998866544
No 434
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.62 E-value=0.4 Score=53.90 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..++|.|+|.+|+||||++..+......+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999998766554
No 435
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.57 E-value=0.88 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
-+++.|.|.+|+||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999988876544
No 436
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.41 E-value=0.17 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999976
No 437
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.33 E-value=0.28 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=22.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
++|+|.|-||+||||+|..+...+..+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 678889999999999999988766544
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.32 E-value=0.23 Score=49.76 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=24.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
-.+|.|.|+.|+||||+++.+.+....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999987764
No 439
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.24 E-value=0.19 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
No 440
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.23 E-value=0.24 Score=47.85 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999998763
No 441
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.19 E-value=0.18 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999865
No 442
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.18 E-value=0.31 Score=52.35 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=39.0
Q ss_pred cccccccHHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 21 LVGVELPMKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
.-+...-...|..+|. .+-..-+++.|.|.+|+||||||..+.......-..++|++
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3344444566666664 22233468999999999999999998876655444677774
No 443
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.18 E-value=0.25 Score=55.57 Aligned_cols=28 Identities=4% Similarity=0.045 Sum_probs=24.7
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISR 68 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~ 68 (887)
.-.+|.+.|+.|.||||+|+++..++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999998764
No 444
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.14 E-value=0.44 Score=50.92 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=24.4
Q ss_pred CCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 39 STNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 39 ~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+..+|+|+|.+|+||||++..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999877554
No 445
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.05 E-value=0.19 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 446
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.03 E-value=0.23 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.++|.|.|+.|+||||||..+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 447
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=89.02 E-value=0.32 Score=52.16 Aligned_cols=57 Identities=18% Similarity=0.175 Sum_probs=39.1
Q ss_pred cccccccHHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEcc
Q 045202 21 LVGVELPMKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFAN 77 (887)
Q Consensus 21 ~vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 77 (887)
..+...-...|..+|. .+-..-+++.|+|.+|+||||||..+...+...-..++|+.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3344445566666665 22233468999999999999999998876654444567774
No 448
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.96 E-value=0.2 Score=51.52 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|.|||||++.+..-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998763
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.93 E-value=0.19 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999865
No 450
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.75 E-value=0.21 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.435 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999875
No 451
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.71 E-value=0.21 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999763
No 452
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.69 E-value=0.21 Score=51.26 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4799999999999999999875
No 453
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.69 E-value=0.25 Score=49.27 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
-.+||.|++|+||||+|+.+.++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998765
No 454
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.68 E-value=0.21 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999865
No 455
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.68 E-value=0.22 Score=52.06 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=21.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+++|+|..|.|||||++.+..-+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 579999999999999999998754
No 456
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.63 E-value=0.21 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999865
No 457
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.62 E-value=0.22 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 458
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.58 E-value=0.18 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999876
No 459
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.55 E-value=0.4 Score=47.33 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..|.|-|+.|+||||+|+.+.+.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999987654
No 460
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.53 E-value=0.27 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..|.|.|..|+||||+|+.+.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999988754
No 461
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.50 E-value=0.23 Score=48.35 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999998763
No 462
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.47 E-value=0.27 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.-|.|+|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999876
No 463
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.42 E-value=0.67 Score=45.08 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.|.|=|.-|+||||.++.+.+.+..+...+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 377889999999999999999887665444444
No 464
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.42 E-value=0.21 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~ 66 (887)
.+|+|.|+.|+||||+|+.+..+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 469999999999999999987764
No 465
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.39 E-value=0.22 Score=50.96 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+++|+|..|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999998763
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.33 E-value=0.28 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999865
No 467
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.31 E-value=0.56 Score=49.97 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=27.1
Q ss_pred HHHhHhcCCCCeeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 31 IESLLRSGSTNVCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 31 l~~~L~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
+.+-+...-....+++|+|..|+|||||.+.+.....
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3333333334557899999999999999999987543
No 468
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.29 E-value=0.23 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 469
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.17 E-value=0.34 Score=62.05 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=37.6
Q ss_pred ccccccHHHHHHhHh-cCCCCeeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 22 VGVELPMKEIESLLR-SGSTNVCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 22 vGr~~~~~~l~~~L~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
.|...-..+|..+|. .+-..-.++.|.|.+|+||||||..+......+-..++|+
T Consensus 711 ~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi 766 (1706)
T 3cmw_A 711 ETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 766 (1706)
T ss_dssp CEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 344444556666654 2222336899999999999999999988766544456676
No 470
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.17 E-value=0.22 Score=47.72 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~ 64 (887)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999998765
No 471
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.16 E-value=0.29 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+|.|.|+.|+||||||..+..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5799999999999999999988654
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.15 E-value=0.29 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998763
No 473
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.11 E-value=0.24 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.432 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 474
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.08 E-value=0.24 Score=50.32 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
.+++|+|..|.|||||++.+..-+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4799999999999999999876443
No 475
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.97 E-value=0.38 Score=46.97 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=25.6
Q ss_pred eEEEEE-cCCCcchHHHHHHHHHHHhcccceEEEc
Q 045202 43 CTLGIW-GIGGIGKTTIAGAIFNKISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 76 (887)
++|+|+ +-||+||||+|..+...+..+-..++.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 578888 6899999999999988766543344444
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.97 E-value=0.47 Score=46.51 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcccce
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRHSAG 72 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~ 72 (887)
..|.|=|.-|+||||+++.+.+.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 468899999999999999999988665554
No 477
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.96 E-value=0.27 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.+.+|+|..|.|||||+++++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998764
No 478
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.95 E-value=0.27 Score=45.67 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~ 64 (887)
-|.++|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999876
No 479
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.91 E-value=0.27 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=20.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.89 E-value=0.24 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
+.|.|.|..|+||||||.++..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999998765
No 481
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.87 E-value=0.25 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999875
No 482
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.86 E-value=0.32 Score=55.20 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=25.0
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHHHHhccc
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFNKISRHS 70 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~f 70 (887)
...+|.++|++|.||||+|+.+..++...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999988765444
No 483
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.79 E-value=0.25 Score=51.11 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999876
No 484
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.77 E-value=0.26 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
No 485
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.57 E-value=0.29 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
--|.|+|.+|+|||||+..+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4688999999999999999876
No 486
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.53 E-value=0.23 Score=54.33 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=21.5
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345899999999999999999986
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.47 E-value=0.37 Score=44.92 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.--|.|+|.+|+|||||+..+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34688999999999999999876
No 488
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=87.28 E-value=0.36 Score=48.01 Aligned_cols=26 Identities=12% Similarity=0.090 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKIS 67 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~ 67 (887)
..+|+|.|+.|+||||+|+.+.+++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998765
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.16 E-value=0.42 Score=47.66 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=20.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..|.|-|+.|+||||+++.+.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 579999999999999999999977654
No 490
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=87.06 E-value=1.8 Score=43.28 Aligned_cols=22 Identities=36% Similarity=0.246 Sum_probs=19.1
Q ss_pred EEEEcCCCcchHHHHHHHHHHH
Q 045202 45 LGIWGIGGIGKTTIAGAIFNKI 66 (887)
Q Consensus 45 i~I~G~gGiGKTtLA~~v~~~~ 66 (887)
+.|+|..|.|||.+|..+..+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7789999999999998887664
No 491
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.01 E-value=0.45 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCcchHHHHHHHHH
Q 045202 41 NVCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 41 ~~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
...-|.|+|.+|+|||||...+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 446789999999999999998765
No 492
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.00 E-value=0.23 Score=49.74 Aligned_cols=24 Identities=33% Similarity=0.133 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNK 65 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~ 65 (887)
-.+|+|.|..|.||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999998765
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.96 E-value=0.38 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCcchHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
...|+|+|.+|+|||||.+.+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999876
No 494
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.87 E-value=0.25 Score=51.73 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHH
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4799999999999999999865
No 495
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.81 E-value=0.6 Score=45.78 Aligned_cols=108 Identities=14% Similarity=0.003 Sum_probs=52.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcccceEEEccccHHHHhcCCHHHHHHHHHHHHhcCCCC--CCCcccchHHHHHh
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRHSAGSYFANNVREAEETGRLGDLRQQLLSTLLNDGNV--KSFPNIGLNFQSKR 119 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~s~~~~~~~l~~~il~~l~~~~~~--~~~~~~~~~~~~~~ 119 (887)
-.+..++|.-|.||||.|.....+...+-..++.+.-. ....++.. .+.+.+...... .... ..+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~--~d~R~ge~----~i~s~~g~~~~a~~~~~~----~~~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC--IDNRYSEE----DVVSHNGLKVKAVPVSAS----KDIFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSSG----GGGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec--cCCcchHH----HHHhhcCCeeEEeecCCH----HHHHHH
Confidence 36788999999999999877776654443333333211 11112222 233333211110 0111 122223
Q ss_pred hCCceEEEEEecCCC--HHHHHHHhcCCCCCCCCcEEEEEeCChh
Q 045202 120 LTRKKVLIVFYDVNH--PRQIEFLVGRLDLFASGSRIIITTRDRQ 162 (887)
Q Consensus 120 l~~kk~LiVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~~ 162 (887)
..++--+|++|.+.. .++++.+....+ .|-.||+|.++.+
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecccc
Confidence 333334999999854 345544433112 3778999999754
No 496
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.78 E-value=0.63 Score=46.91 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=24.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHH-HhcccceEEEc
Q 045202 43 CTLGIWGIGGIGKTTIAGAIFNK-ISRHSAGSYFA 76 (887)
Q Consensus 43 ~vi~I~G~gGiGKTtLA~~v~~~-~~~~f~~~~~~ 76 (887)
.++.|.|.+|+||||+|..+... ....-..++++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 57899999999999999886543 33333445555
No 497
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.76 E-value=0.35 Score=45.09 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.2
Q ss_pred EEEEEcCCCcchHHHHHHHHH
Q 045202 44 TLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 44 vi~I~G~gGiGKTtLA~~v~~ 64 (887)
-|+|+|.+|+|||||...+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999999876
No 498
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.63 E-value=0.39 Score=46.92 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.--|+|+|.+|+|||||...+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34678999999999999988875
No 499
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.60 E-value=0.35 Score=46.25 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHH
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFN 64 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~ 64 (887)
.--|.|+|.+|+|||||++.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999876
No 500
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.58 E-value=0.54 Score=51.60 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=24.4
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHHHhcc
Q 045202 42 VCTLGIWGIGGIGKTTIAGAIFNKISRH 69 (887)
Q Consensus 42 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~ 69 (887)
..+++|+|.+|+||||++..+...+..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999998876654
Done!